		Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	0 (0%)	155	0.045336	1	0.043048	1	0.26423	1	0.028215	1	0.053189	1	0.77634	1	0.028077	1	0.67794	1
1q gain	0 (0%)	147	0.00011654	0.05	3.411e-06	0.00154	0.0010671	0.431	0.00028836	0.122	0.43378	1	0.060891	1	0.68788	1	0.14244	1
2p gain	0 (0%)	136	6.3245e-05	0.0273	0.010962	1	0.0044747	1	0.19742	1	0.083362	1	0.58064	1	0.022486	1	0.090678	1
2q gain	0 (0%)	133	3.2521e-05	0.0142	0.035623	1	0.023419	1	0.34481	1	0.24182	1	0.62268	1	0.11229	1	0.16078	1
3p gain	0 (0%)	119	8.5475e-21	4.08e-18	0.00076955	0.316	9.0985e-07	0.000414	0.00016244	0.0694	0.0046899	1	0.074553	1	0.24059	1	0.018277	1
3q gain	0 (0%)	114	2.8312e-21	1.35e-18	0.00034472	0.145	1.0201e-07	4.69e-05	0.00090574	0.37	0.00050792	0.211	0.035649	1	0.15382	1	0.0015764	0.629
4p gain	0 (0%)	153	0.61433	1	0.46504	1	0.69789	1	0.70639	1	0.68895	1	1	1	NA	NA	NA	NA
4q gain	0 (0%)	154	0.55727	1	0.46504	1	0.91515	1	0.81922	1	0.86573	1	0.6385	1	NA	NA	NA	NA
5p gain	0 (0%)	140	1.453e-05	0.00645	0.01127	1	0.13186	1	0.071987	1	0.3356	1	0.80032	1	0.2545	1	1	1
5q gain	0 (0%)	140	1.453e-05	0.00645	0.01127	1	0.19123	1	0.071987	1	0.46952	1	0.80032	1	0.2545	1	0.57217	1
6p gain	0 (0%)	153	0.37172	1	0.20859	1	0.29311	1	0.23981	1	0.23312	1	0.27416	1	0.46525	1	1	1
6q gain	0 (0%)	153	0.11899	1	0.20859	1	0.55584	1	0.48401	1	0.17893	1	0.1963	1	0.39976	1	1	1
7p gain	0 (0%)	74	6.2746e-12	2.96e-09	2.1943e-09	1.02e-06	1.7344e-13	8.22e-11	8.3739e-10	3.9e-07	0.0057823	1	0.046496	1	0.30657	1	0.017608	1
7q gain	0 (0%)	73	2.3965e-11	1.13e-08	9.1757e-09	4.24e-06	8.0362e-13	3.79e-10	2.7539e-09	1.28e-06	0.0026404	1	0.057912	1	0.19445	1	0.022518	1
8p gain	0 (0%)	148	0.23372	1	0.037011	1	0.3513	1	0.14118	1	0.33483	1	0.18946	1	0.345	1	0.053277	1
8q gain	0 (0%)	146	0.92895	1	0.0026456	1	0.045375	1	0.012096	1	0.11067	1	0.25958	1	0.18759	1	0.029722	1
10p gain	0 (0%)	153	0.52003	1	0.043048	1	0.65136	1	0.70639	1	0.26868	1	0.73427	1	0.29276	1	0.28922	1
10q gain	0 (0%)	154	0.1133	1	NA	NA	0.75902	1	0.81922	1	0.20126	1	0.68784	1	NA	NA	NA	NA
11p gain	0 (0%)	155	0.045336	1	NA	NA	1	1	1	1	NA	NA	NA	NA	NA	NA	NA	NA
11q gain	0 (0%)	155	0.045336	1	NA	NA	1	1	1	1	NA	NA	NA	NA	NA	NA	NA	NA
12p gain	0 (0%)	101	0.0038919	1	0.21657	1	0.040093	1	0.016914	1	0.0071118	1	0.088041	1	0.18883	1	0.04377	1
12q gain	0 (0%)	101	0.0038919	1	0.21657	1	0.040093	1	0.016914	1	0.0071118	1	0.088041	1	0.18883	1	0.04377	1
13q gain	0 (0%)	141	0.085812	1	0.61228	1	0.041368	1	0.64452	1	0.56585	1	0.94053	1	0.93114	1	0.81354	1
15q gain	0 (0%)	155	0.045336	1	0.46504	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
16p gain	0 (0%)	79	2.581e-13	1.22e-10	0.16217	1	0.002356	0.931	2.0891e-05	0.00917	0.020117	1	0.0078354	1	0.0078094	1	0.0046917	1
16q gain	0 (0%)	83	3.1194e-14	1.48e-11	0.041313	1	0.00028448	0.12	4.783e-05	0.0208	0.0095958	1	0.0015907	0.633	0.016333	1	0.0015424	0.617
17p gain	0 (0%)	72	2.4251e-11	1.14e-08	3.192e-08	1.47e-05	3.0455e-10	1.42e-07	1.5041e-10	7.04e-08	0.019137	1	0.022112	1	0.027751	1	0.0087037	1
17q gain	0 (0%)	59	4.3845e-09	2.03e-06	0.00062746	0.259	4.1093e-06	0.00185	4.3424e-06	0.00195	0.097093	1	0.16828	1	0.18731	1	0.027866	1
18p gain	0 (0%)	151	0.37646	1	0.12441	1	0.94544	1	0.76303	1	0.50736	1	1	1	0.68867	1	1	1
18q gain	0 (0%)	154	0.048044	1	0.25682	1	0.30875	1	0.28746	1	0.82998	1	0.68784	1	1	1	1	1
20p gain	0 (0%)	111	0.035581	1	0.022034	1	0.0013873	0.556	0.012409	1	0.10782	1	0.62367	1	0.39215	1	0.20042	1
20q gain	0 (0%)	110	0.047951	1	0.055553	1	0.0041704	1	0.043305	1	0.08383	1	0.70105	1	0.17754	1	0.33048	1
21q gain	0 (0%)	150	0.36898	1	0.41605	1	0.0062587	1	0.17904	1	0.72145	1	0.77175	1	0.024804	1	1	1
Xq gain	0 (0%)	153	0.071974	1	0.20859	1	0.65136	1	0.70639	1	0.28771	1	0.73427	1	0.83152	1	0.031399	1
1p loss	0 (0%)	139	0.00042611	0.178	0.24751	1	0.035299	1	0.55081	1	0.39052	1	0.54996	1	0.1611	1	0.62628	1
1q loss	0 (0%)	148	0.00019189	0.0817	0.067346	1	0.76021	1	0.13271	1	0.52938	1	0.15316	1	0.25719	1	0.19785	1
3p loss	0 (0%)	147	0.00011654	0.05	3.411e-06	0.00154	0.0091469	1	0.00029604	0.125	0.13548	1	0.25909	1	0.43349	1	0.036085	1
3q loss	0 (0%)	155	0.60211	1	0.043048	1	0.26423	1	0.028215	1	0.07544	1	0.50679	1	0.77475	1	0.057143	1
4p loss	0 (0%)	143	1.9068e-05	0.00841	7.1747e-07	0.000328	2.9396e-05	0.0128	0.0012929	0.521	0.242	1	0.15104	1	0.93114	1	0.023741	1
4q loss	0 (0%)	142	3.6404e-07	0.000167	1.7216e-07	7.9e-05	8.1591e-06	0.00365	0.0010319	0.419	0.10948	1	0.4086	1	0.82096	1	0.031452	1
5p loss	0 (0%)	154	0.81911	1	0.060376	1	0.26423	1	0.0038726	1	0.31511	1	0.38582	1	0.38522	1	0.51647	1
5q loss	0 (0%)	153	0.44407	1	0.028789	1	0.07307	1	0.00056125	0.233	0.11105	1	0.18943	1	0.1597	1	0.2579	1
6p loss	0 (0%)	148	0.056731	1	0.24315	1	0.2451	1	0.77854	1	0.72153	1	0.83189	1	0.90548	1	0.61707	1
6q loss	0 (0%)	146	0.04703	1	0.055952	1	0.014677	1	0.16332	1	0.52793	1	0.52231	1	0.72716	1	0.15092	1
8p loss	0 (0%)	154	0.27277	1	0.78886	1	1	1	1	1	1	1	1	1	NA	NA	NA	NA
8q loss	0 (0%)	155	0.045336	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
9p loss	0 (0%)	140	1.453e-05	0.00645	1.0521e-05	0.00469	1.5669e-06	0.000711	0.0055357	1	0.22278	1	0.33824	1	0.56391	1	0.036821	1
9q loss	0 (0%)	139	5.5794e-05	0.0242	2.4679e-06	0.00112	1.5669e-06	0.000711	0.00056097	0.233	0.15945	1	0.019685	1	0.66302	1	0.001747	0.694
10p loss	0 (0%)	149	5.5674e-05	0.0242	0.0044783	1	0.011646	1	0.054557	1	0.07937	1	0.21182	1	0.87314	1	0.0039117	1
10q loss	0 (0%)	149	5.5674e-05	0.0242	0.0013281	0.534	0.011646	1	0.0047009	1	0.0092926	1	0.072227	1	0.55979	1	0.0069184	1
11p loss	0 (0%)	149	0.011909	1	0.017031	1	0.029929	1	0.0085905	1	0.70001	1	0.10746	1	0.81344	1	0.036085	1
11q loss	0 (0%)	147	0.002257	0.894	0.0004189	0.176	0.039028	1	0.00949	1	0.85125	1	0.30118	1	0.72716	1	0.15092	1
13q loss	0 (0%)	143	0.0010142	0.413	7.1747e-07	0.000328	0.0002729	0.116	0.0028585	1	0.020591	1	0.049747	1	0.099648	1	0.02755	1
14q loss	0 (0%)	128	1.9568e-16	9.31e-14	0.046223	1	0.00084623	0.347	0.023157	1	0.71259	1	0.63268	1	0.91555	1	0.58517	1
15q loss	0 (0%)	143	0.000434	0.181	0.047915	1	0.021614	1	0.10186	1	0.88693	1	0.74789	1	0.85533	1	0.47989	1
16q loss	0 (0%)	154	0.013189	1	0.01167	1	0.07307	1	0.0055003	1	0.86573	1	0.10988	1	0.6419	1	0.18697	1
17p loss	0 (0%)	153	0.11899	1	0.01167	1	0.043985	1	0.00097912	0.399	0.20139	1	0.18943	1	0.32042	1	0.080527	1
18p loss	0 (0%)	137	0.053418	1	0.0026967	1	0.00066915	0.276	0.0073908	1	0.32217	1	0.22562	1	0.17518	1	0.68599	1
18q loss	0 (0%)	136	0.038704	1	0.001059	0.429	0.00025917	0.11	0.0036203	1	0.70554	1	0.26241	1	0.17518	1	0.44071	1
19p loss	0 (0%)	151	0.0037834	1	0.36425	1	1	1	0.64597	1	0.4147	1	0.1963	1	0.54949	1	0.37516	1
19q loss	0 (0%)	152	0.012225	1	0.57272	1	1	1	0.74012	1	0.4147	1	0.55268	1	0.54949	1	1	1
21q loss	0 (0%)	138	0.15916	1	0.54005	1	0.85829	1	0.33145	1	0.2085	1	0.5683	1	0.69468	1	0.3222	1
22q loss	0 (0%)	130	1.1809e-05	0.00526	1.9647e-05	0.00864	2.9182e-05	0.0128	7.9998e-05	0.0344	0.13724	1	0.098662	1	0.26808	1	0.60992	1
Xq loss	0 (0%)	153	0.71711	1	0.47253	1	0.53853	1	0.57045	1	0.40323	1	0.19686	1	NA	NA	NA	NA
