
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LAML-TB/4467611/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/LAML-TB/4434813/LAML-TB.clin.merged.picked.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=LAML-TB", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=LAML-TB"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/LAML-TB/4434813/LAML-TB.clin.merged.picked.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LAML-TB/4467611/transformed.cor.cli.txt"

nPatients in clinical file=200, in cluster file=191, common to both=191
[1] "Reduce the number of clustering variables from 80 to 30."
[1]  30 191
[1] "1P GAIN MUTATION ANALYSIS"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                3               188 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                3               188 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                4               187 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                4               187 
[1] "4Q GAIN MUTATION ANALYSIS"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                4               187 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                4               187 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               22               169 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               22               169 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               23               168 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               23               168 
[1] "10Q GAIN MUTATION ANALYSIS"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 3                188 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 3                188 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 4                187 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 4                187 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 7                184 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 7                184 
[1] "13Q GAIN MUTATION ANALYSIS"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 6                185 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 6                185 
[1] "17Q GAIN MUTATION ANALYSIS"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 3                188 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 3                188 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 6                185 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 6                185 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 6                185 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 6                185 
[1] "21Q GAIN MUTATION ANALYSIS"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 8                183 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 8                183 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 9                182 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 9                182 
[1] "XQ GAIN MUTATION ANALYSIS"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                3               188 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                3               188 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
                3               188 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
                3               188 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                3               188 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                3               188 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                6               185 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                6               185 
[1] "7P LOSS MUTATION ANALYSIS"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               17               174 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               17               174 
[1] "7Q LOSS MUTATION ANALYSIS"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               20               171 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               20               171 
[1] "12P LOSS MUTATION ANALYSIS"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 4                187 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 4                187 
[1] "15Q LOSS MUTATION ANALYSIS"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                 4                187 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                 4                187 
[1] "16Q LOSS MUTATION ANALYSIS"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                 4                187 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                 4                187 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                13                178 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                13                178 
[1] "17Q LOSS MUTATION ANALYSIS"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 7                184 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 7                184 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                 5                186 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                 5                186 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                 4                187 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                 4                187 
[1] "19P LOSS MUTATION ANALYSIS"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 4                187 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 4                187 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 4                187 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 4                187 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                5               186 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                5               186 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                     "VITALSTATUS"                     
 [3] "DAYSTODEATH"                      "DAYSTOLASTFOLLOWUP"              
 [5] "PRIMARYSITEOFDESEASE"             "DCCUPLOADDATE"                   
 [7] "GENDER"                           "DATEOFINITIALPATHOLOGICDIAGNOSIS"
 [9] "DAYSTOLASTKNOWNALIVE"             "KARNOFSKYPERFORMANCESCORE"       
[11] "BATCHNUMBER"                     

Input Data has 11 rows and 191 columns.

[1] "Batch" "11"   
[1] "Last Follow UP"
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 
          NA         2556           NA           NA           NA         2861 
TCGA-AB-2809 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2813 TCGA-AB-2814 
          NA           NA           NA           NA           NA           NA 
TCGA-AB-2815 TCGA-AB-2816 TCGA-AB-2817 TCGA-AB-2818 TCGA-AB-2819 TCGA-AB-2820 
          NA           NA           NA           NA         2496           NA 
TCGA-AB-2821 TCGA-AB-2822 TCGA-AB-2823 TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 
          NA           NA           NA           NA           NA           NA 
TCGA-AB-2827 TCGA-AB-2828 TCGA-AB-2829 TCGA-AB-2830 TCGA-AB-2831 TCGA-AB-2832 
          NA         2284           NA           NA           NA           NA 
TCGA-AB-2834 TCGA-AB-2835 TCGA-AB-2836 TCGA-AB-2837 TCGA-AB-2838 TCGA-AB-2839 
          NA         1673           NA           NA           NA           NA 
TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2842 TCGA-AB-2844 TCGA-AB-2845 TCGA-AB-2846 
          NA           NA           NA           NA           NA           NA 
TCGA-AB-2848 TCGA-AB-2849 TCGA-AB-2850 TCGA-AB-2851 TCGA-AB-2853 TCGA-AB-2854 
          NA         2220           NA           NA           NA           NA 
TCGA-AB-2855 TCGA-AB-2856 TCGA-AB-2857 TCGA-AB-2858 TCGA-AB-2859 TCGA-AB-2860 
          NA           NA           NA           NA           NA           NA 
TCGA-AB-2861 TCGA-AB-2862 TCGA-AB-2863 TCGA-AB-2864 TCGA-AB-2865 TCGA-AB-2866 
          NA         1430           NA           NA           NA           NA 
TCGA-AB-2867 TCGA-AB-2868 TCGA-AB-2869 TCGA-AB-2870 TCGA-AB-2871 TCGA-AB-2872 
          NA           NA          243           NA          153          638 
TCGA-AB-2873 TCGA-AB-2874 TCGA-AB-2875 TCGA-AB-2877 TCGA-AB-2878 TCGA-AB-2879 
         273          396          212          638           NA          245 
TCGA-AB-2880 TCGA-AB-2881 TCGA-AB-2882 TCGA-AB-2883 TCGA-AB-2884 TCGA-AB-2885 
          NA          393           NA          730           NA           NA 
TCGA-AB-2886 TCGA-AB-2887 TCGA-AB-2888 TCGA-AB-2889 TCGA-AB-2890 TCGA-AB-2892 
         181           NA          334          304           NA          942 
TCGA-AB-2893 TCGA-AB-2894 TCGA-AB-2895 TCGA-AB-2896 TCGA-AB-2897 TCGA-AB-2898 
          NA           NA           NA           NA          243          393 
TCGA-AB-2899 TCGA-AB-2900 TCGA-AB-2901 TCGA-AB-2903 TCGA-AB-2904 TCGA-AB-2905 
          NA           NA           58           NA           NA         1610 
TCGA-AB-2906 TCGA-AB-2907 TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2910 TCGA-AB-2911 
         577           NA           NA           30           NA         1186 
TCGA-AB-2912 TCGA-AB-2913 TCGA-AB-2914 TCGA-AB-2915 TCGA-AB-2916 TCGA-AB-2917 
          NA         1216          792           NA          882         1216 
TCGA-AB-2919 TCGA-AB-2920 TCGA-AB-2921 TCGA-AB-2922 TCGA-AB-2923 TCGA-AB-2924 
          61           NA           NA           NA           NA           90 
TCGA-AB-2925 TCGA-AB-2926 TCGA-AB-2927 TCGA-AB-2928 TCGA-AB-2929 TCGA-AB-2930 
          NA           NA           NA           NA           NA           NA 
TCGA-AB-2931 TCGA-AB-2932 TCGA-AB-2933 TCGA-AB-2934 TCGA-AB-2935 TCGA-AB-2936 
          NA           NA           NA           28           NA           59 
TCGA-AB-2937 TCGA-AB-2938 TCGA-AB-2939 TCGA-AB-2940 TCGA-AB-2941 TCGA-AB-2942 
          NA           NA          455           NA           NA          641 
TCGA-AB-2943 TCGA-AB-2944 TCGA-AB-2945 TCGA-AB-2946 TCGA-AB-2947 TCGA-AB-2948 
          NA           NA           NA           NA           31           NA 
TCGA-AB-2949 TCGA-AB-2950 TCGA-AB-2952 TCGA-AB-2954 TCGA-AB-2955 TCGA-AB-2956 
         699          306           NA         1492           NA           NA 
TCGA-AB-2957 TCGA-AB-2959 TCGA-AB-2963 TCGA-AB-2964 TCGA-AB-2965 TCGA-AB-2966 
         608           NA           NA         1277           NA           NA 
TCGA-AB-2967 TCGA-AB-2968 TCGA-AB-2969 TCGA-AB-2970 TCGA-AB-2971 TCGA-AB-2972 
        1035           NA         1127           NA           NA           NA 
TCGA-AB-2973 TCGA-AB-2974 TCGA-AB-2975 TCGA-AB-2976 TCGA-AB-2977 TCGA-AB-2978 
          NA           NA           NA           NA           NA          699 
TCGA-AB-2980 TCGA-AB-2982 TCGA-AB-2983 TCGA-AB-2984 TCGA-AB-2985 TCGA-AB-2986 
         699          149           NA         1156           NA           NA 
TCGA-AB-2987 TCGA-AB-2988 TCGA-AB-2989 TCGA-AB-2990 TCGA-AB-2991 TCGA-AB-2992 
          NA           NA           NA          457         1826           NA 
TCGA-AB-2993 TCGA-AB-2994 TCGA-AB-2995 TCGA-AB-2996 TCGA-AB-2997 TCGA-AB-2998 
          NA         1798         1551         1581           NA           NA 
TCGA-AB-2999 TCGA-AB-3000 TCGA-AB-3001 TCGA-AB-3002 TCGA-AB-3005 TCGA-AB-3006 
        1734         1249         1581           NA         2099           NA 
TCGA-AB-3007 TCGA-AB-3008 TCGA-AB-3009 TCGA-AB-3011 TCGA-AB-3012 
        1581           NA           NA         1885         1887 
Variable 1:'AGE':	nDistinctValues=63,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=66,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=55,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=10,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'BATCH.NUMBER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"    "GENDER"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 191 columns, 1 survival variables, and 2 non-survival variables.
AGE, nv=63, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1P GAIN MUTATION ANALYSIS
D1V1, survival
                   sevent
clus2                 0   1
  1P GAIN MUTATED     0   1
  1P GAIN WILD-TYPE  62 103
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                1               165 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                1               103 
$`1P GAIN MUTATED`
TCGA-AB-2952 
        1.02 

$`1P GAIN WILD-TYPE`
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 
       26.04        84.03        18.94        31.04         5.92        94.06 
TCGA-AB-2809 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2813 TCGA-AB-2814 
        2.04         1.02         7.99        12.03         1.02        26.04 
TCGA-AB-2815 TCGA-AB-2816 TCGA-AB-2817 TCGA-AB-2818 TCGA-AB-2819 TCGA-AB-2821 
       26.99         8.05         8.98         9.96        82.06        26.99 
TCGA-AB-2822 TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2828 
       31.96         0.99         6.94        24.03         8.98        75.09 
TCGA-AB-2829 TCGA-AB-2830 TCGA-AB-2831 TCGA-AB-2832 TCGA-AB-2834 TCGA-AB-2835 
        8.98         9.04        21.04        12.00         8.05        55.00 
TCGA-AB-2836 TCGA-AB-2838 TCGA-AB-2839 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2844 
       17.00        12.00        15.98         0.92        46.06         3.98 
TCGA-AB-2845 TCGA-AB-2846 TCGA-AB-2848 TCGA-AB-2849 TCGA-AB-2850 TCGA-AB-2851 
        9.96        46.09        14.96        72.99         1.97         7.96 
TCGA-AB-2853 TCGA-AB-2854 TCGA-AB-2855 TCGA-AB-2856 TCGA-AB-2857 TCGA-AB-2858 
        2.89        12.03         6.94         4.90        10.06        18.94 
TCGA-AB-2859 TCGA-AB-2860 TCGA-AB-2862 TCGA-AB-2863 TCGA-AB-2864 TCGA-AB-2865 
        9.96        14.01        47.01         1.02        18.97         2.01 
TCGA-AB-2866 TCGA-AB-2867 TCGA-AB-2868 TCGA-AB-2869 TCGA-AB-2870 TCGA-AB-2871 
        5.00         6.05         4.96         7.99         5.00         5.03 
TCGA-AB-2872 TCGA-AB-2873 TCGA-AB-2874 TCGA-AB-2875 TCGA-AB-2877 TCGA-AB-2878 
       20.98         8.98        13.02         6.97        20.98        12.00 
TCGA-AB-2879 TCGA-AB-2881 TCGA-AB-2882 TCGA-AB-2883 TCGA-AB-2884 TCGA-AB-2885 
        8.05        12.92        12.00        24.00        24.03         7.04 
TCGA-AB-2886 TCGA-AB-2888 TCGA-AB-2889 TCGA-AB-2892 TCGA-AB-2893 TCGA-AB-2894 
        5.95        10.98         9.99        30.97         6.97         5.92 
TCGA-AB-2895 TCGA-AB-2896 TCGA-AB-2897 TCGA-AB-2898 TCGA-AB-2899 TCGA-AB-2900 
        5.03         7.00         7.99        12.92        22.06         6.02 
TCGA-AB-2901 TCGA-AB-2904 TCGA-AB-2905 TCGA-AB-2906 TCGA-AB-2908 TCGA-AB-2909 
        1.91        16.96        52.93        18.97         1.02         0.99 
TCGA-AB-2911 TCGA-AB-2912 TCGA-AB-2913 TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2917 
       38.99         9.01        39.98        26.04        29.00        39.98 
TCGA-AB-2919 TCGA-AB-2920 TCGA-AB-2923 TCGA-AB-2924 TCGA-AB-2925 TCGA-AB-2926 
        2.01        12.03         1.02         2.96         7.96        14.99 
TCGA-AB-2927 TCGA-AB-2929 TCGA-AB-2933 TCGA-AB-2934 TCGA-AB-2935 TCGA-AB-2936 
        2.93         4.04         4.01         0.92         1.97         1.94 
TCGA-AB-2937 TCGA-AB-2938 TCGA-AB-2939 TCGA-AB-2942 TCGA-AB-2945 TCGA-AB-2947 
        7.07         9.96        14.96        21.07         7.99         1.02 
TCGA-AB-2948 TCGA-AB-2949 TCGA-AB-2950 TCGA-AB-2954 TCGA-AB-2955 TCGA-AB-2956 
       19.07        22.98        10.06        49.05        16.08         6.02 
TCGA-AB-2957 TCGA-AB-2959 TCGA-AB-2963 TCGA-AB-2964 TCGA-AB-2965 TCGA-AB-2966 
       19.99        16.08        53.95        41.98        11.01        28.08 
TCGA-AB-2967 TCGA-AB-2968 TCGA-AB-2969 TCGA-AB-2970 TCGA-AB-2971 TCGA-AB-2972 
       34.03        15.06        37.05        10.03        26.04         0.99 
TCGA-AB-2973 TCGA-AB-2974 TCGA-AB-2976 TCGA-AB-2977 TCGA-AB-2978 TCGA-AB-2980 
       20.02         3.02        30.08         0.99        22.98        22.98 
TCGA-AB-2982 TCGA-AB-2983 TCGA-AB-2984 TCGA-AB-2985 TCGA-AB-2986 TCGA-AB-2987 
        4.90        11.01        38.01         8.98         6.97         6.05 
TCGA-AB-2988 TCGA-AB-2989 TCGA-AB-2990 TCGA-AB-2991 TCGA-AB-2992 TCGA-AB-2993 
        0.99        12.00        15.02        60.03        56.09        25.02 
TCGA-AB-2994 TCGA-AB-2995 TCGA-AB-2996 TCGA-AB-2998 TCGA-AB-2999 TCGA-AB-3000 
       59.11        50.99        51.98         1.02        57.01        41.06 
TCGA-AB-3001 TCGA-AB-3002 TCGA-AB-3005 TCGA-AB-3006 TCGA-AB-3007 TCGA-AB-3008 
       51.98        47.05        69.01        15.91        51.98        27.02 
TCGA-AB-3009 TCGA-AB-3011 TCGA-AB-3012 
       18.94        61.97        62.04 

  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             1.02              0.92 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             1.02             94.06 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             1.02             12.03 
[1] "1.0 - 1.0 (1.0)"   "0.9 - 94.1 (12.0)"
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
[1] "Remove cluster labels:" "1P GAIN MUTATED"       
clus
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                1               165 
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2950        TCGA-AB-2954        TCGA-AB-2955        TCGA-AB-2956 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963        TCGA-AB-2964 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967        TCGA-AB-2968 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971        TCGA-AB-2972 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976        TCGA-AB-2977 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982        TCGA-AB-2983 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986        TCGA-AB-2987 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990        TCGA-AB-2991 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994        TCGA-AB-2995 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999        TCGA-AB-3000 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005        TCGA-AB-3006 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009        TCGA-AB-3011 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-AB-3012 
"1P GAIN WILD-TYPE" 
D1V2, continuous
D1V3, binary
                   cls
clus                  0   1
  1P GAIN MUTATED     2   1
  1P GAIN WILD-TYPE  85 103
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      2    1
  1P GAIN WILD-TYPE   85  103
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  FEMALE               2                85
  MALE                 1               103

Clustering(2) Variable = 4P GAIN MUTATION ANALYSIS
D2V1, survival
                   sevent
clus2                 0   1
  4P GAIN MUTATED     2   2
  4P GAIN WILD-TYPE  60 102
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                4               162 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                2               102 
$`4P GAIN MUTATED`
TCGA-AB-2849 TCGA-AB-2855 TCGA-AB-2883 TCGA-AB-2945 
       72.99         6.94        24.00         7.99 

$`4P GAIN WILD-TYPE`
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 
       26.04        84.03        18.94        31.04         5.92        94.06 
TCGA-AB-2809 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2813 TCGA-AB-2814 
        2.04         1.02         7.99        12.03         1.02        26.04 
TCGA-AB-2815 TCGA-AB-2816 TCGA-AB-2817 TCGA-AB-2818 TCGA-AB-2819 TCGA-AB-2821 
       26.99         8.05         8.98         9.96        82.06        26.99 
TCGA-AB-2822 TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2828 
       31.96         0.99         6.94        24.03         8.98        75.09 
TCGA-AB-2829 TCGA-AB-2830 TCGA-AB-2831 TCGA-AB-2832 TCGA-AB-2834 TCGA-AB-2835 
        8.98         9.04        21.04        12.00         8.05        55.00 
TCGA-AB-2836 TCGA-AB-2838 TCGA-AB-2839 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2844 
       17.00        12.00        15.98         0.92        46.06         3.98 
TCGA-AB-2845 TCGA-AB-2846 TCGA-AB-2848 TCGA-AB-2850 TCGA-AB-2851 TCGA-AB-2853 
        9.96        46.09        14.96         1.97         7.96         2.89 
TCGA-AB-2854 TCGA-AB-2856 TCGA-AB-2857 TCGA-AB-2858 TCGA-AB-2859 TCGA-AB-2860 
       12.03         4.90        10.06        18.94         9.96        14.01 
TCGA-AB-2862 TCGA-AB-2863 TCGA-AB-2864 TCGA-AB-2865 TCGA-AB-2866 TCGA-AB-2867 
       47.01         1.02        18.97         2.01         5.00         6.05 
TCGA-AB-2868 TCGA-AB-2869 TCGA-AB-2870 TCGA-AB-2871 TCGA-AB-2872 TCGA-AB-2873 
        4.96         7.99         5.00         5.03        20.98         8.98 
TCGA-AB-2874 TCGA-AB-2875 TCGA-AB-2877 TCGA-AB-2878 TCGA-AB-2879 TCGA-AB-2881 
       13.02         6.97        20.98        12.00         8.05        12.92 
TCGA-AB-2882 TCGA-AB-2884 TCGA-AB-2885 TCGA-AB-2886 TCGA-AB-2888 TCGA-AB-2889 
       12.00        24.03         7.04         5.95        10.98         9.99 
TCGA-AB-2892 TCGA-AB-2893 TCGA-AB-2894 TCGA-AB-2895 TCGA-AB-2896 TCGA-AB-2897 
       30.97         6.97         5.92         5.03         7.00         7.99 
TCGA-AB-2898 TCGA-AB-2899 TCGA-AB-2900 TCGA-AB-2901 TCGA-AB-2904 TCGA-AB-2905 
       12.92        22.06         6.02         1.91        16.96        52.93 
TCGA-AB-2906 TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2911 TCGA-AB-2912 TCGA-AB-2913 
       18.97         1.02         0.99        38.99         9.01        39.98 
TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2917 TCGA-AB-2919 TCGA-AB-2920 TCGA-AB-2923 
       26.04        29.00        39.98         2.01        12.03         1.02 
TCGA-AB-2924 TCGA-AB-2925 TCGA-AB-2926 TCGA-AB-2927 TCGA-AB-2929 TCGA-AB-2933 
        2.96         7.96        14.99         2.93         4.04         4.01 
TCGA-AB-2934 TCGA-AB-2935 TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2938 TCGA-AB-2939 
        0.92         1.97         1.94         7.07         9.96        14.96 
TCGA-AB-2942 TCGA-AB-2947 TCGA-AB-2948 TCGA-AB-2949 TCGA-AB-2950 TCGA-AB-2952 
       21.07         1.02        19.07        22.98        10.06         1.02 
TCGA-AB-2954 TCGA-AB-2955 TCGA-AB-2956 TCGA-AB-2957 TCGA-AB-2959 TCGA-AB-2963 
       49.05        16.08         6.02        19.99        16.08        53.95 
TCGA-AB-2964 TCGA-AB-2965 TCGA-AB-2966 TCGA-AB-2967 TCGA-AB-2968 TCGA-AB-2969 
       41.98        11.01        28.08        34.03        15.06        37.05 
TCGA-AB-2970 TCGA-AB-2971 TCGA-AB-2972 TCGA-AB-2973 TCGA-AB-2974 TCGA-AB-2976 
       10.03        26.04         0.99        20.02         3.02        30.08 
TCGA-AB-2977 TCGA-AB-2978 TCGA-AB-2980 TCGA-AB-2982 TCGA-AB-2983 TCGA-AB-2984 
        0.99        22.98        22.98         4.90        11.01        38.01 
TCGA-AB-2985 TCGA-AB-2986 TCGA-AB-2987 TCGA-AB-2988 TCGA-AB-2989 TCGA-AB-2990 
        8.98         6.97         6.05         0.99        12.00        15.02 
TCGA-AB-2991 TCGA-AB-2992 TCGA-AB-2993 TCGA-AB-2994 TCGA-AB-2995 TCGA-AB-2996 
       60.03        56.09        25.02        59.11        50.99        51.98 
TCGA-AB-2998 TCGA-AB-2999 TCGA-AB-3000 TCGA-AB-3001 TCGA-AB-3002 TCGA-AB-3005 
        1.02        57.01        41.06        51.98        47.05        69.01 
TCGA-AB-3006 TCGA-AB-3007 TCGA-AB-3008 TCGA-AB-3009 TCGA-AB-3011 TCGA-AB-3012 
       15.91        51.98        27.02        18.94        61.97        62.04 

  4P GAIN MUTATED 4P GAIN WILD-TYPE 
             6.94              0.92 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
            72.99             94.06 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
           15.995            12.015 
[1] "6.9 - 73.0 (16.0)" "0.9 - 94.1 (12.0)"
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D2V2, continuous
D2V3, binary
                   cls
clus                  0   1
  4P GAIN MUTATED     1   3
  4P GAIN WILD-TYPE  86 101
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      1    3
  4P GAIN WILD-TYPE   86  101
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  FEMALE               1                86
  MALE                 3               101

Clustering(3) Variable = 4Q GAIN MUTATION ANALYSIS
D3V1, survival
                   sevent
clus2                 0   1
  4Q GAIN MUTATED     2   2
  4Q GAIN WILD-TYPE  60 102
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                4               162 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                2               102 
$`4Q GAIN MUTATED`
TCGA-AB-2849 TCGA-AB-2855 TCGA-AB-2883 TCGA-AB-2945 
       72.99         6.94        24.00         7.99 

$`4Q GAIN WILD-TYPE`
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 
       26.04        84.03        18.94        31.04         5.92        94.06 
TCGA-AB-2809 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2813 TCGA-AB-2814 
        2.04         1.02         7.99        12.03         1.02        26.04 
TCGA-AB-2815 TCGA-AB-2816 TCGA-AB-2817 TCGA-AB-2818 TCGA-AB-2819 TCGA-AB-2821 
       26.99         8.05         8.98         9.96        82.06        26.99 
TCGA-AB-2822 TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2828 
       31.96         0.99         6.94        24.03         8.98        75.09 
TCGA-AB-2829 TCGA-AB-2830 TCGA-AB-2831 TCGA-AB-2832 TCGA-AB-2834 TCGA-AB-2835 
        8.98         9.04        21.04        12.00         8.05        55.00 
TCGA-AB-2836 TCGA-AB-2838 TCGA-AB-2839 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2844 
       17.00        12.00        15.98         0.92        46.06         3.98 
TCGA-AB-2845 TCGA-AB-2846 TCGA-AB-2848 TCGA-AB-2850 TCGA-AB-2851 TCGA-AB-2853 
        9.96        46.09        14.96         1.97         7.96         2.89 
TCGA-AB-2854 TCGA-AB-2856 TCGA-AB-2857 TCGA-AB-2858 TCGA-AB-2859 TCGA-AB-2860 
       12.03         4.90        10.06        18.94         9.96        14.01 
TCGA-AB-2862 TCGA-AB-2863 TCGA-AB-2864 TCGA-AB-2865 TCGA-AB-2866 TCGA-AB-2867 
       47.01         1.02        18.97         2.01         5.00         6.05 
TCGA-AB-2868 TCGA-AB-2869 TCGA-AB-2870 TCGA-AB-2871 TCGA-AB-2872 TCGA-AB-2873 
        4.96         7.99         5.00         5.03        20.98         8.98 
TCGA-AB-2874 TCGA-AB-2875 TCGA-AB-2877 TCGA-AB-2878 TCGA-AB-2879 TCGA-AB-2881 
       13.02         6.97        20.98        12.00         8.05        12.92 
TCGA-AB-2882 TCGA-AB-2884 TCGA-AB-2885 TCGA-AB-2886 TCGA-AB-2888 TCGA-AB-2889 
       12.00        24.03         7.04         5.95        10.98         9.99 
TCGA-AB-2892 TCGA-AB-2893 TCGA-AB-2894 TCGA-AB-2895 TCGA-AB-2896 TCGA-AB-2897 
       30.97         6.97         5.92         5.03         7.00         7.99 
TCGA-AB-2898 TCGA-AB-2899 TCGA-AB-2900 TCGA-AB-2901 TCGA-AB-2904 TCGA-AB-2905 
       12.92        22.06         6.02         1.91        16.96        52.93 
TCGA-AB-2906 TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2911 TCGA-AB-2912 TCGA-AB-2913 
       18.97         1.02         0.99        38.99         9.01        39.98 
TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2917 TCGA-AB-2919 TCGA-AB-2920 TCGA-AB-2923 
       26.04        29.00        39.98         2.01        12.03         1.02 
TCGA-AB-2924 TCGA-AB-2925 TCGA-AB-2926 TCGA-AB-2927 TCGA-AB-2929 TCGA-AB-2933 
        2.96         7.96        14.99         2.93         4.04         4.01 
TCGA-AB-2934 TCGA-AB-2935 TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2938 TCGA-AB-2939 
        0.92         1.97         1.94         7.07         9.96        14.96 
TCGA-AB-2942 TCGA-AB-2947 TCGA-AB-2948 TCGA-AB-2949 TCGA-AB-2950 TCGA-AB-2952 
       21.07         1.02        19.07        22.98        10.06         1.02 
TCGA-AB-2954 TCGA-AB-2955 TCGA-AB-2956 TCGA-AB-2957 TCGA-AB-2959 TCGA-AB-2963 
       49.05        16.08         6.02        19.99        16.08        53.95 
TCGA-AB-2964 TCGA-AB-2965 TCGA-AB-2966 TCGA-AB-2967 TCGA-AB-2968 TCGA-AB-2969 
       41.98        11.01        28.08        34.03        15.06        37.05 
TCGA-AB-2970 TCGA-AB-2971 TCGA-AB-2972 TCGA-AB-2973 TCGA-AB-2974 TCGA-AB-2976 
       10.03        26.04         0.99        20.02         3.02        30.08 
TCGA-AB-2977 TCGA-AB-2978 TCGA-AB-2980 TCGA-AB-2982 TCGA-AB-2983 TCGA-AB-2984 
        0.99        22.98        22.98         4.90        11.01        38.01 
TCGA-AB-2985 TCGA-AB-2986 TCGA-AB-2987 TCGA-AB-2988 TCGA-AB-2989 TCGA-AB-2990 
        8.98         6.97         6.05         0.99        12.00        15.02 
TCGA-AB-2991 TCGA-AB-2992 TCGA-AB-2993 TCGA-AB-2994 TCGA-AB-2995 TCGA-AB-2996 
       60.03        56.09        25.02        59.11        50.99        51.98 
TCGA-AB-2998 TCGA-AB-2999 TCGA-AB-3000 TCGA-AB-3001 TCGA-AB-3002 TCGA-AB-3005 
        1.02        57.01        41.06        51.98        47.05        69.01 
TCGA-AB-3006 TCGA-AB-3007 TCGA-AB-3008 TCGA-AB-3009 TCGA-AB-3011 TCGA-AB-3012 
       15.91        51.98        27.02        18.94        61.97        62.04 

  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
             6.94              0.92 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
            72.99             94.06 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
           15.995            12.015 
[1] "6.9 - 73.0 (16.0)" "0.9 - 94.1 (12.0)"
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D3V2, continuous
D3V3, binary
                   cls
clus                  0   1
  4Q GAIN MUTATED     1   3
  4Q GAIN WILD-TYPE  86 101
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      1    3
  4Q GAIN WILD-TYPE   86  101
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  FEMALE               1                86
  MALE                 3               101

Clustering(4) Variable = 8P GAIN MUTATION ANALYSIS
D4V1, survival
                   sevent
clus2                0  1
  8P GAIN MUTATED    6 14
  8P GAIN WILD-TYPE 56 90
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               20               146 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               14                90 
$`8P GAIN MUTATED`
TCGA-AB-2807 TCGA-AB-2821 TCGA-AB-2822 TCGA-AB-2838 TCGA-AB-2863 TCGA-AB-2864 
        5.92        26.99        31.96        12.00         1.02        18.97 
TCGA-AB-2868 TCGA-AB-2878 TCGA-AB-2883 TCGA-AB-2898 TCGA-AB-2901 TCGA-AB-2904 
        4.96        12.00        24.00        12.92         1.91        16.96 
TCGA-AB-2912 TCGA-AB-2913 TCGA-AB-2920 TCGA-AB-2926 TCGA-AB-2935 TCGA-AB-2949 
        9.01        39.98        12.03        14.99         1.97        22.98 
TCGA-AB-2952 TCGA-AB-3007 
        1.02        51.98 

$`8P GAIN WILD-TYPE`
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2808 TCGA-AB-2809 
       26.04        84.03        18.94        31.04        94.06         2.04 
TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2813 TCGA-AB-2814 TCGA-AB-2815 
        1.02         7.99        12.03         1.02        26.04        26.99 
TCGA-AB-2816 TCGA-AB-2817 TCGA-AB-2818 TCGA-AB-2819 TCGA-AB-2824 TCGA-AB-2825 
        8.05         8.98         9.96        82.06         0.99         6.94 
TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2828 TCGA-AB-2829 TCGA-AB-2830 TCGA-AB-2831 
       24.03         8.98        75.09         8.98         9.04        21.04 
TCGA-AB-2832 TCGA-AB-2834 TCGA-AB-2835 TCGA-AB-2836 TCGA-AB-2839 TCGA-AB-2840 
       12.00         8.05        55.00        17.00        15.98         0.92 
TCGA-AB-2841 TCGA-AB-2844 TCGA-AB-2845 TCGA-AB-2846 TCGA-AB-2848 TCGA-AB-2849 
       46.06         3.98         9.96        46.09        14.96        72.99 
TCGA-AB-2850 TCGA-AB-2851 TCGA-AB-2853 TCGA-AB-2854 TCGA-AB-2855 TCGA-AB-2856 
        1.97         7.96         2.89        12.03         6.94         4.90 
TCGA-AB-2857 TCGA-AB-2858 TCGA-AB-2859 TCGA-AB-2860 TCGA-AB-2862 TCGA-AB-2865 
       10.06        18.94         9.96        14.01        47.01         2.01 
TCGA-AB-2866 TCGA-AB-2867 TCGA-AB-2869 TCGA-AB-2870 TCGA-AB-2871 TCGA-AB-2872 
        5.00         6.05         7.99         5.00         5.03        20.98 
TCGA-AB-2873 TCGA-AB-2874 TCGA-AB-2875 TCGA-AB-2877 TCGA-AB-2879 TCGA-AB-2881 
        8.98        13.02         6.97        20.98         8.05        12.92 
TCGA-AB-2882 TCGA-AB-2884 TCGA-AB-2885 TCGA-AB-2886 TCGA-AB-2888 TCGA-AB-2889 
       12.00        24.03         7.04         5.95        10.98         9.99 
TCGA-AB-2892 TCGA-AB-2893 TCGA-AB-2894 TCGA-AB-2895 TCGA-AB-2896 TCGA-AB-2897 
       30.97         6.97         5.92         5.03         7.00         7.99 
TCGA-AB-2899 TCGA-AB-2900 TCGA-AB-2905 TCGA-AB-2906 TCGA-AB-2908 TCGA-AB-2909 
       22.06         6.02        52.93        18.97         1.02         0.99 
TCGA-AB-2911 TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2917 TCGA-AB-2919 TCGA-AB-2923 
       38.99        26.04        29.00        39.98         2.01         1.02 
TCGA-AB-2924 TCGA-AB-2925 TCGA-AB-2927 TCGA-AB-2929 TCGA-AB-2933 TCGA-AB-2934 
        2.96         7.96         2.93         4.04         4.01         0.92 
TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2938 TCGA-AB-2939 TCGA-AB-2942 TCGA-AB-2945 
        1.94         7.07         9.96        14.96        21.07         7.99 
TCGA-AB-2947 TCGA-AB-2948 TCGA-AB-2950 TCGA-AB-2954 TCGA-AB-2955 TCGA-AB-2956 
        1.02        19.07        10.06        49.05        16.08         6.02 
TCGA-AB-2957 TCGA-AB-2959 TCGA-AB-2963 TCGA-AB-2964 TCGA-AB-2965 TCGA-AB-2966 
       19.99        16.08        53.95        41.98        11.01        28.08 
TCGA-AB-2967 TCGA-AB-2968 TCGA-AB-2969 TCGA-AB-2970 TCGA-AB-2971 TCGA-AB-2972 
       34.03        15.06        37.05        10.03        26.04         0.99 
TCGA-AB-2973 TCGA-AB-2974 TCGA-AB-2976 TCGA-AB-2977 TCGA-AB-2978 TCGA-AB-2980 
       20.02         3.02        30.08         0.99        22.98        22.98 
TCGA-AB-2982 TCGA-AB-2983 TCGA-AB-2984 TCGA-AB-2985 TCGA-AB-2986 TCGA-AB-2987 
        4.90        11.01        38.01         8.98         6.97         6.05 
TCGA-AB-2988 TCGA-AB-2989 TCGA-AB-2990 TCGA-AB-2991 TCGA-AB-2992 TCGA-AB-2993 
        0.99        12.00        15.02        60.03        56.09        25.02 
TCGA-AB-2994 TCGA-AB-2995 TCGA-AB-2996 TCGA-AB-2998 TCGA-AB-2999 TCGA-AB-3000 
       59.11        50.99        51.98         1.02        57.01        41.06 
TCGA-AB-3001 TCGA-AB-3002 TCGA-AB-3005 TCGA-AB-3006 TCGA-AB-3008 TCGA-AB-3009 
       51.98        47.05        69.01        15.91        27.02        18.94 
TCGA-AB-3011 TCGA-AB-3012 
       61.97        62.04 

  8P GAIN MUTATED 8P GAIN WILD-TYPE 
             1.02              0.92 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
            51.98             94.06 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
           12.475            12.000 
[1] "1.0 - 52.0 (12.5)" "0.9 - 94.1 (12.0)"
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D4V2, continuous
D4V3, binary
                   cls
clus                 0  1
  8P GAIN MUTATED    6 16
  8P GAIN WILD-TYPE 81 88
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED      6   16
  8P GAIN WILD-TYPE   81   88
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  FEMALE               6                81
  MALE                16                88

Clustering(5) Variable = 8Q GAIN MUTATION ANALYSIS
D5V1, survival
                   sevent
clus2                0  1
  8Q GAIN MUTATED    6 15
  8Q GAIN WILD-TYPE 56 89
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               21               145 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               15                89 
$`8Q GAIN MUTATED`
TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2821 TCGA-AB-2822 TCGA-AB-2838 TCGA-AB-2863 
       31.04         5.92        26.99        31.96        12.00         1.02 
TCGA-AB-2864 TCGA-AB-2868 TCGA-AB-2878 TCGA-AB-2883 TCGA-AB-2898 TCGA-AB-2901 
       18.97         4.96        12.00        24.00        12.92         1.91 
TCGA-AB-2904 TCGA-AB-2912 TCGA-AB-2913 TCGA-AB-2920 TCGA-AB-2926 TCGA-AB-2935 
       16.96         9.01        39.98        12.03        14.99         1.97 
TCGA-AB-2949 TCGA-AB-2952 TCGA-AB-3007 
       22.98         1.02        51.98 

$`8Q GAIN WILD-TYPE`
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2808 TCGA-AB-2809 TCGA-AB-2810 
       26.04        84.03        18.94        94.06         2.04         1.02 
TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2813 TCGA-AB-2814 TCGA-AB-2815 TCGA-AB-2816 
        7.99        12.03         1.02        26.04        26.99         8.05 
TCGA-AB-2817 TCGA-AB-2818 TCGA-AB-2819 TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 
        8.98         9.96        82.06         0.99         6.94        24.03 
TCGA-AB-2827 TCGA-AB-2828 TCGA-AB-2829 TCGA-AB-2830 TCGA-AB-2831 TCGA-AB-2832 
        8.98        75.09         8.98         9.04        21.04        12.00 
TCGA-AB-2834 TCGA-AB-2835 TCGA-AB-2836 TCGA-AB-2839 TCGA-AB-2840 TCGA-AB-2841 
        8.05        55.00        17.00        15.98         0.92        46.06 
TCGA-AB-2844 TCGA-AB-2845 TCGA-AB-2846 TCGA-AB-2848 TCGA-AB-2849 TCGA-AB-2850 
        3.98         9.96        46.09        14.96        72.99         1.97 
TCGA-AB-2851 TCGA-AB-2853 TCGA-AB-2854 TCGA-AB-2855 TCGA-AB-2856 TCGA-AB-2857 
        7.96         2.89        12.03         6.94         4.90        10.06 
TCGA-AB-2858 TCGA-AB-2859 TCGA-AB-2860 TCGA-AB-2862 TCGA-AB-2865 TCGA-AB-2866 
       18.94         9.96        14.01        47.01         2.01         5.00 
TCGA-AB-2867 TCGA-AB-2869 TCGA-AB-2870 TCGA-AB-2871 TCGA-AB-2872 TCGA-AB-2873 
        6.05         7.99         5.00         5.03        20.98         8.98 
TCGA-AB-2874 TCGA-AB-2875 TCGA-AB-2877 TCGA-AB-2879 TCGA-AB-2881 TCGA-AB-2882 
       13.02         6.97        20.98         8.05        12.92        12.00 
TCGA-AB-2884 TCGA-AB-2885 TCGA-AB-2886 TCGA-AB-2888 TCGA-AB-2889 TCGA-AB-2892 
       24.03         7.04         5.95        10.98         9.99        30.97 
TCGA-AB-2893 TCGA-AB-2894 TCGA-AB-2895 TCGA-AB-2896 TCGA-AB-2897 TCGA-AB-2899 
        6.97         5.92         5.03         7.00         7.99        22.06 
TCGA-AB-2900 TCGA-AB-2905 TCGA-AB-2906 TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2911 
        6.02        52.93        18.97         1.02         0.99        38.99 
TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2917 TCGA-AB-2919 TCGA-AB-2923 TCGA-AB-2924 
       26.04        29.00        39.98         2.01         1.02         2.96 
TCGA-AB-2925 TCGA-AB-2927 TCGA-AB-2929 TCGA-AB-2933 TCGA-AB-2934 TCGA-AB-2936 
        7.96         2.93         4.04         4.01         0.92         1.94 
TCGA-AB-2937 TCGA-AB-2938 TCGA-AB-2939 TCGA-AB-2942 TCGA-AB-2945 TCGA-AB-2947 
        7.07         9.96        14.96        21.07         7.99         1.02 
TCGA-AB-2948 TCGA-AB-2950 TCGA-AB-2954 TCGA-AB-2955 TCGA-AB-2956 TCGA-AB-2957 
       19.07        10.06        49.05        16.08         6.02        19.99 
TCGA-AB-2959 TCGA-AB-2963 TCGA-AB-2964 TCGA-AB-2965 TCGA-AB-2966 TCGA-AB-2967 
       16.08        53.95        41.98        11.01        28.08        34.03 
TCGA-AB-2968 TCGA-AB-2969 TCGA-AB-2970 TCGA-AB-2971 TCGA-AB-2972 TCGA-AB-2973 
       15.06        37.05        10.03        26.04         0.99        20.02 
TCGA-AB-2974 TCGA-AB-2976 TCGA-AB-2977 TCGA-AB-2978 TCGA-AB-2980 TCGA-AB-2982 
        3.02        30.08         0.99        22.98        22.98         4.90 
TCGA-AB-2983 TCGA-AB-2984 TCGA-AB-2985 TCGA-AB-2986 TCGA-AB-2987 TCGA-AB-2988 
       11.01        38.01         8.98         6.97         6.05         0.99 
TCGA-AB-2989 TCGA-AB-2990 TCGA-AB-2991 TCGA-AB-2992 TCGA-AB-2993 TCGA-AB-2994 
       12.00        15.02        60.03        56.09        25.02        59.11 
TCGA-AB-2995 TCGA-AB-2996 TCGA-AB-2998 TCGA-AB-2999 TCGA-AB-3000 TCGA-AB-3001 
       50.99        51.98         1.02        57.01        41.06        51.98 
TCGA-AB-3002 TCGA-AB-3005 TCGA-AB-3006 TCGA-AB-3008 TCGA-AB-3009 TCGA-AB-3011 
       47.05        69.01        15.91        27.02        18.94        61.97 
TCGA-AB-3012 
       62.04 

  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
             1.02              0.92 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
            51.98             94.06 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
            12.92             12.00 
[1] "1.0 - 52.0 (12.9)" "0.9 - 94.1 (12.0)"
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D5V2, continuous
D5V3, binary
                   cls
clus                 0  1
  8Q GAIN MUTATED    6 17
  8Q GAIN WILD-TYPE 81 87
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED      6   17
  8Q GAIN WILD-TYPE   81   87
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  FEMALE               6                81
  MALE                17                87

Clustering(6) Variable = 10Q GAIN MUTATION ANALYSIS
D6V1, survival
                    sevent
clus2                  0   1
  10Q GAIN MUTATED     1   1
  10Q GAIN WILD-TYPE  61 103
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 2                164 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 1                103 
$`10Q GAIN MUTATED`
TCGA-AB-2901 TCGA-AB-2935 
        1.91         1.97 

$`10Q GAIN WILD-TYPE`
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 
       26.04        84.03        18.94        31.04         5.92        94.06 
TCGA-AB-2809 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2813 TCGA-AB-2814 
        2.04         1.02         7.99        12.03         1.02        26.04 
TCGA-AB-2815 TCGA-AB-2816 TCGA-AB-2817 TCGA-AB-2818 TCGA-AB-2819 TCGA-AB-2821 
       26.99         8.05         8.98         9.96        82.06        26.99 
TCGA-AB-2822 TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2828 
       31.96         0.99         6.94        24.03         8.98        75.09 
TCGA-AB-2829 TCGA-AB-2830 TCGA-AB-2831 TCGA-AB-2832 TCGA-AB-2834 TCGA-AB-2835 
        8.98         9.04        21.04        12.00         8.05        55.00 
TCGA-AB-2836 TCGA-AB-2838 TCGA-AB-2839 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2844 
       17.00        12.00        15.98         0.92        46.06         3.98 
TCGA-AB-2845 TCGA-AB-2846 TCGA-AB-2848 TCGA-AB-2849 TCGA-AB-2850 TCGA-AB-2851 
        9.96        46.09        14.96        72.99         1.97         7.96 
TCGA-AB-2853 TCGA-AB-2854 TCGA-AB-2855 TCGA-AB-2856 TCGA-AB-2857 TCGA-AB-2858 
        2.89        12.03         6.94         4.90        10.06        18.94 
TCGA-AB-2859 TCGA-AB-2860 TCGA-AB-2862 TCGA-AB-2863 TCGA-AB-2864 TCGA-AB-2865 
        9.96        14.01        47.01         1.02        18.97         2.01 
TCGA-AB-2866 TCGA-AB-2867 TCGA-AB-2868 TCGA-AB-2869 TCGA-AB-2870 TCGA-AB-2871 
        5.00         6.05         4.96         7.99         5.00         5.03 
TCGA-AB-2872 TCGA-AB-2873 TCGA-AB-2874 TCGA-AB-2875 TCGA-AB-2877 TCGA-AB-2878 
       20.98         8.98        13.02         6.97        20.98        12.00 
TCGA-AB-2879 TCGA-AB-2881 TCGA-AB-2882 TCGA-AB-2883 TCGA-AB-2884 TCGA-AB-2885 
        8.05        12.92        12.00        24.00        24.03         7.04 
TCGA-AB-2886 TCGA-AB-2888 TCGA-AB-2889 TCGA-AB-2892 TCGA-AB-2893 TCGA-AB-2894 
        5.95        10.98         9.99        30.97         6.97         5.92 
TCGA-AB-2895 TCGA-AB-2896 TCGA-AB-2897 TCGA-AB-2898 TCGA-AB-2899 TCGA-AB-2900 
        5.03         7.00         7.99        12.92        22.06         6.02 
TCGA-AB-2904 TCGA-AB-2905 TCGA-AB-2906 TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2911 
       16.96        52.93        18.97         1.02         0.99        38.99 
TCGA-AB-2912 TCGA-AB-2913 TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2917 TCGA-AB-2919 
        9.01        39.98        26.04        29.00        39.98         2.01 
TCGA-AB-2920 TCGA-AB-2923 TCGA-AB-2924 TCGA-AB-2925 TCGA-AB-2926 TCGA-AB-2927 
       12.03         1.02         2.96         7.96        14.99         2.93 
TCGA-AB-2929 TCGA-AB-2933 TCGA-AB-2934 TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2938 
        4.04         4.01         0.92         1.94         7.07         9.96 
TCGA-AB-2939 TCGA-AB-2942 TCGA-AB-2945 TCGA-AB-2947 TCGA-AB-2948 TCGA-AB-2949 
       14.96        21.07         7.99         1.02        19.07        22.98 
TCGA-AB-2950 TCGA-AB-2952 TCGA-AB-2954 TCGA-AB-2955 TCGA-AB-2956 TCGA-AB-2957 
       10.06         1.02        49.05        16.08         6.02        19.99 
TCGA-AB-2959 TCGA-AB-2963 TCGA-AB-2964 TCGA-AB-2965 TCGA-AB-2966 TCGA-AB-2967 
       16.08        53.95        41.98        11.01        28.08        34.03 
TCGA-AB-2968 TCGA-AB-2969 TCGA-AB-2970 TCGA-AB-2971 TCGA-AB-2972 TCGA-AB-2973 
       15.06        37.05        10.03        26.04         0.99        20.02 
TCGA-AB-2974 TCGA-AB-2976 TCGA-AB-2977 TCGA-AB-2978 TCGA-AB-2980 TCGA-AB-2982 
        3.02        30.08         0.99        22.98        22.98         4.90 
TCGA-AB-2983 TCGA-AB-2984 TCGA-AB-2985 TCGA-AB-2986 TCGA-AB-2987 TCGA-AB-2988 
       11.01        38.01         8.98         6.97         6.05         0.99 
TCGA-AB-2989 TCGA-AB-2990 TCGA-AB-2991 TCGA-AB-2992 TCGA-AB-2993 TCGA-AB-2994 
       12.00        15.02        60.03        56.09        25.02        59.11 
TCGA-AB-2995 TCGA-AB-2996 TCGA-AB-2998 TCGA-AB-2999 TCGA-AB-3000 TCGA-AB-3001 
       50.99        51.98         1.02        57.01        41.06        51.98 
TCGA-AB-3002 TCGA-AB-3005 TCGA-AB-3006 TCGA-AB-3007 TCGA-AB-3008 TCGA-AB-3009 
       47.05        69.01        15.91        51.98        27.02        18.94 
TCGA-AB-3011 TCGA-AB-3012 
       61.97        62.04 

  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
              1.91               0.92 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
              1.97              94.06 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
              1.94              12.03 
[1] "1.9 - 2.0 (1.9)"   "0.9 - 94.1 (12.0)"
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-3012 
"10Q GAIN WILD-TYPE" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-3012 
"10Q GAIN WILD-TYPE" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-3012 
"10Q GAIN WILD-TYPE" 
[1] "Remove cluster labels:" "10Q GAIN MUTATED"      
clus
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 2                164 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2904         TCGA-AB-2905         TCGA-AB-2906 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2908         TCGA-AB-2909         TCGA-AB-2911 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2912         TCGA-AB-2913         TCGA-AB-2914 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2916         TCGA-AB-2917         TCGA-AB-2919 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2920         TCGA-AB-2923         TCGA-AB-2924 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2925         TCGA-AB-2926         TCGA-AB-2927 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2929         TCGA-AB-2933         TCGA-AB-2934 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2936         TCGA-AB-2937         TCGA-AB-2938 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2939         TCGA-AB-2942         TCGA-AB-2945 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2947         TCGA-AB-2948         TCGA-AB-2949 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2950         TCGA-AB-2952         TCGA-AB-2954 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2955         TCGA-AB-2956         TCGA-AB-2957 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2959         TCGA-AB-2963         TCGA-AB-2964 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2965         TCGA-AB-2966         TCGA-AB-2967 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2968         TCGA-AB-2969         TCGA-AB-2970 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2971         TCGA-AB-2972         TCGA-AB-2973 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2974         TCGA-AB-2976         TCGA-AB-2977 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2978         TCGA-AB-2980         TCGA-AB-2982 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2983         TCGA-AB-2984         TCGA-AB-2985 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2986         TCGA-AB-2987         TCGA-AB-2988 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2989         TCGA-AB-2990         TCGA-AB-2991 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2992         TCGA-AB-2993         TCGA-AB-2994 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2995         TCGA-AB-2996         TCGA-AB-2998 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-2999         TCGA-AB-3000         TCGA-AB-3001 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-3002         TCGA-AB-3005         TCGA-AB-3006 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-3007         TCGA-AB-3008         TCGA-AB-3009 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AB-3011         TCGA-AB-3012 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
D6V2, continuous
D6V3, binary
                    cls
clus                   0   1
  10Q GAIN MUTATED     0   3
  10Q GAIN WILD-TYPE  87 101
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      0    3
  10Q GAIN WILD-TYPE   87  101
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  FEMALE                0                 87
  MALE                  3                101

Clustering(7) Variable = 11P GAIN MUTATION ANALYSIS
D7V1, survival
                    sevent
clus2                  0   1
  11P GAIN MUTATED     1   1
  11P GAIN WILD-TYPE  61 103
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 2                164 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 1                103 
$`11P GAIN MUTATED`
TCGA-AB-2838 TCGA-AB-2916 
          12           29 

$`11P GAIN WILD-TYPE`
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 
       26.04        84.03        18.94        31.04         5.92        94.06 
TCGA-AB-2809 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2813 TCGA-AB-2814 
        2.04         1.02         7.99        12.03         1.02        26.04 
TCGA-AB-2815 TCGA-AB-2816 TCGA-AB-2817 TCGA-AB-2818 TCGA-AB-2819 TCGA-AB-2821 
       26.99         8.05         8.98         9.96        82.06        26.99 
TCGA-AB-2822 TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2828 
       31.96         0.99         6.94        24.03         8.98        75.09 
TCGA-AB-2829 TCGA-AB-2830 TCGA-AB-2831 TCGA-AB-2832 TCGA-AB-2834 TCGA-AB-2835 
        8.98         9.04        21.04        12.00         8.05        55.00 
TCGA-AB-2836 TCGA-AB-2839 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2844 TCGA-AB-2845 
       17.00        15.98         0.92        46.06         3.98         9.96 
TCGA-AB-2846 TCGA-AB-2848 TCGA-AB-2849 TCGA-AB-2850 TCGA-AB-2851 TCGA-AB-2853 
       46.09        14.96        72.99         1.97         7.96         2.89 
TCGA-AB-2854 TCGA-AB-2855 TCGA-AB-2856 TCGA-AB-2857 TCGA-AB-2858 TCGA-AB-2859 
       12.03         6.94         4.90        10.06        18.94         9.96 
TCGA-AB-2860 TCGA-AB-2862 TCGA-AB-2863 TCGA-AB-2864 TCGA-AB-2865 TCGA-AB-2866 
       14.01        47.01         1.02        18.97         2.01         5.00 
TCGA-AB-2867 TCGA-AB-2868 TCGA-AB-2869 TCGA-AB-2870 TCGA-AB-2871 TCGA-AB-2872 
        6.05         4.96         7.99         5.00         5.03        20.98 
TCGA-AB-2873 TCGA-AB-2874 TCGA-AB-2875 TCGA-AB-2877 TCGA-AB-2878 TCGA-AB-2879 
        8.98        13.02         6.97        20.98        12.00         8.05 
TCGA-AB-2881 TCGA-AB-2882 TCGA-AB-2883 TCGA-AB-2884 TCGA-AB-2885 TCGA-AB-2886 
       12.92        12.00        24.00        24.03         7.04         5.95 
TCGA-AB-2888 TCGA-AB-2889 TCGA-AB-2892 TCGA-AB-2893 TCGA-AB-2894 TCGA-AB-2895 
       10.98         9.99        30.97         6.97         5.92         5.03 
TCGA-AB-2896 TCGA-AB-2897 TCGA-AB-2898 TCGA-AB-2899 TCGA-AB-2900 TCGA-AB-2901 
        7.00         7.99        12.92        22.06         6.02         1.91 
TCGA-AB-2904 TCGA-AB-2905 TCGA-AB-2906 TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2911 
       16.96        52.93        18.97         1.02         0.99        38.99 
TCGA-AB-2912 TCGA-AB-2913 TCGA-AB-2914 TCGA-AB-2917 TCGA-AB-2919 TCGA-AB-2920 
        9.01        39.98        26.04        39.98         2.01        12.03 
TCGA-AB-2923 TCGA-AB-2924 TCGA-AB-2925 TCGA-AB-2926 TCGA-AB-2927 TCGA-AB-2929 
        1.02         2.96         7.96        14.99         2.93         4.04 
TCGA-AB-2933 TCGA-AB-2934 TCGA-AB-2935 TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2938 
        4.01         0.92         1.97         1.94         7.07         9.96 
TCGA-AB-2939 TCGA-AB-2942 TCGA-AB-2945 TCGA-AB-2947 TCGA-AB-2948 TCGA-AB-2949 
       14.96        21.07         7.99         1.02        19.07        22.98 
TCGA-AB-2950 TCGA-AB-2952 TCGA-AB-2954 TCGA-AB-2955 TCGA-AB-2956 TCGA-AB-2957 
       10.06         1.02        49.05        16.08         6.02        19.99 
TCGA-AB-2959 TCGA-AB-2963 TCGA-AB-2964 TCGA-AB-2965 TCGA-AB-2966 TCGA-AB-2967 
       16.08        53.95        41.98        11.01        28.08        34.03 
TCGA-AB-2968 TCGA-AB-2969 TCGA-AB-2970 TCGA-AB-2971 TCGA-AB-2972 TCGA-AB-2973 
       15.06        37.05        10.03        26.04         0.99        20.02 
TCGA-AB-2974 TCGA-AB-2976 TCGA-AB-2977 TCGA-AB-2978 TCGA-AB-2980 TCGA-AB-2982 
        3.02        30.08         0.99        22.98        22.98         4.90 
TCGA-AB-2983 TCGA-AB-2984 TCGA-AB-2985 TCGA-AB-2986 TCGA-AB-2987 TCGA-AB-2988 
       11.01        38.01         8.98         6.97         6.05         0.99 
TCGA-AB-2989 TCGA-AB-2990 TCGA-AB-2991 TCGA-AB-2992 TCGA-AB-2993 TCGA-AB-2994 
       12.00        15.02        60.03        56.09        25.02        59.11 
TCGA-AB-2995 TCGA-AB-2996 TCGA-AB-2998 TCGA-AB-2999 TCGA-AB-3000 TCGA-AB-3001 
       50.99        51.98         1.02        57.01        41.06        51.98 
TCGA-AB-3002 TCGA-AB-3005 TCGA-AB-3006 TCGA-AB-3007 TCGA-AB-3008 TCGA-AB-3009 
       47.05        69.01        15.91        51.98        27.02        18.94 
TCGA-AB-3011 TCGA-AB-3012 
       61.97        62.04 

  11P GAIN MUTATED 11P GAIN WILD-TYPE 
             12.00               0.92 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
             29.00              94.06 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
            20.500             12.015 
[1] "12.0 - 29.0 (20.5)" "0.9 - 94.1 (12.0)" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-3012 
"11P GAIN WILD-TYPE" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-3012 
"11P GAIN WILD-TYPE" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-3012 
"11P GAIN WILD-TYPE" 
[1] "Remove cluster labels:" "11P GAIN MUTATED"      
clus
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 2                164 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2839         TCGA-AB-2840 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2841         TCGA-AB-2844         TCGA-AB-2845 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2846         TCGA-AB-2848         TCGA-AB-2849 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2850         TCGA-AB-2851         TCGA-AB-2853 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2854         TCGA-AB-2855         TCGA-AB-2856 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2857         TCGA-AB-2858         TCGA-AB-2859 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2860         TCGA-AB-2862         TCGA-AB-2863 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2864         TCGA-AB-2865         TCGA-AB-2866 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2867         TCGA-AB-2868         TCGA-AB-2869 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2870         TCGA-AB-2871         TCGA-AB-2872 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2873         TCGA-AB-2874         TCGA-AB-2875 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2877         TCGA-AB-2878         TCGA-AB-2879 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2881         TCGA-AB-2882         TCGA-AB-2883 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2884         TCGA-AB-2885         TCGA-AB-2886 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2888         TCGA-AB-2889         TCGA-AB-2892 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2893         TCGA-AB-2894         TCGA-AB-2895 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2896         TCGA-AB-2897         TCGA-AB-2898 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2899         TCGA-AB-2900         TCGA-AB-2901 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2904         TCGA-AB-2905         TCGA-AB-2906 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2908         TCGA-AB-2909         TCGA-AB-2911 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2912         TCGA-AB-2913         TCGA-AB-2914 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2917         TCGA-AB-2919         TCGA-AB-2920 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2923         TCGA-AB-2924         TCGA-AB-2925 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2926         TCGA-AB-2927         TCGA-AB-2929 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2933         TCGA-AB-2934         TCGA-AB-2935 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2936         TCGA-AB-2937         TCGA-AB-2938 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2939         TCGA-AB-2942         TCGA-AB-2945 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2947         TCGA-AB-2948         TCGA-AB-2949 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2950         TCGA-AB-2952         TCGA-AB-2954 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2955         TCGA-AB-2956         TCGA-AB-2957 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2959         TCGA-AB-2963         TCGA-AB-2964 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2965         TCGA-AB-2966         TCGA-AB-2967 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2968         TCGA-AB-2969         TCGA-AB-2970 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2971         TCGA-AB-2972         TCGA-AB-2973 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2974         TCGA-AB-2976         TCGA-AB-2977 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2978         TCGA-AB-2980         TCGA-AB-2982 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2983         TCGA-AB-2984         TCGA-AB-2985 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2986         TCGA-AB-2987         TCGA-AB-2988 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2989         TCGA-AB-2990         TCGA-AB-2991 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2992         TCGA-AB-2993         TCGA-AB-2994 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2995         TCGA-AB-2996         TCGA-AB-2998 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-2999         TCGA-AB-3000         TCGA-AB-3001 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-3002         TCGA-AB-3005         TCGA-AB-3006 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-3007         TCGA-AB-3008         TCGA-AB-3009 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-AB-3011         TCGA-AB-3012 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
D7V2, continuous
D7V3, binary
                    cls
clus                   0   1
  11P GAIN MUTATED     2   2
  11P GAIN WILD-TYPE  85 102
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      2    2
  11P GAIN WILD-TYPE   85  102
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  FEMALE                2                 85
  MALE                  2                102

Clustering(8) Variable = 11Q GAIN MUTATION ANALYSIS
D8V1, survival
                    sevent
clus2                  0   1
  11Q GAIN MUTATED     1   4
  11Q GAIN WILD-TYPE  61 100
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 5                161 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 4                100 
$`11Q GAIN MUTATED`
TCGA-AB-2830 TCGA-AB-2838 TCGA-AB-2885 TCGA-AB-2904 TCGA-AB-2916 
        9.04        12.00         7.04        16.96        29.00 

$`11Q GAIN WILD-TYPE`
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 
       26.04        84.03        18.94        31.04         5.92        94.06 
TCGA-AB-2809 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2813 TCGA-AB-2814 
        2.04         1.02         7.99        12.03         1.02        26.04 
TCGA-AB-2815 TCGA-AB-2816 TCGA-AB-2817 TCGA-AB-2818 TCGA-AB-2819 TCGA-AB-2821 
       26.99         8.05         8.98         9.96        82.06        26.99 
TCGA-AB-2822 TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2828 
       31.96         0.99         6.94        24.03         8.98        75.09 
TCGA-AB-2829 TCGA-AB-2831 TCGA-AB-2832 TCGA-AB-2834 TCGA-AB-2835 TCGA-AB-2836 
        8.98        21.04        12.00         8.05        55.00        17.00 
TCGA-AB-2839 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2844 TCGA-AB-2845 TCGA-AB-2846 
       15.98         0.92        46.06         3.98         9.96        46.09 
TCGA-AB-2848 TCGA-AB-2849 TCGA-AB-2850 TCGA-AB-2851 TCGA-AB-2853 TCGA-AB-2854 
       14.96        72.99         1.97         7.96         2.89        12.03 
TCGA-AB-2855 TCGA-AB-2856 TCGA-AB-2857 TCGA-AB-2858 TCGA-AB-2859 TCGA-AB-2860 
        6.94         4.90        10.06        18.94         9.96        14.01 
TCGA-AB-2862 TCGA-AB-2863 TCGA-AB-2864 TCGA-AB-2865 TCGA-AB-2866 TCGA-AB-2867 
       47.01         1.02        18.97         2.01         5.00         6.05 
TCGA-AB-2868 TCGA-AB-2869 TCGA-AB-2870 TCGA-AB-2871 TCGA-AB-2872 TCGA-AB-2873 
        4.96         7.99         5.00         5.03        20.98         8.98 
TCGA-AB-2874 TCGA-AB-2875 TCGA-AB-2877 TCGA-AB-2878 TCGA-AB-2879 TCGA-AB-2881 
       13.02         6.97        20.98        12.00         8.05        12.92 
TCGA-AB-2882 TCGA-AB-2883 TCGA-AB-2884 TCGA-AB-2886 TCGA-AB-2888 TCGA-AB-2889 
       12.00        24.00        24.03         5.95        10.98         9.99 
TCGA-AB-2892 TCGA-AB-2893 TCGA-AB-2894 TCGA-AB-2895 TCGA-AB-2896 TCGA-AB-2897 
       30.97         6.97         5.92         5.03         7.00         7.99 
TCGA-AB-2898 TCGA-AB-2899 TCGA-AB-2900 TCGA-AB-2901 TCGA-AB-2905 TCGA-AB-2906 
       12.92        22.06         6.02         1.91        52.93        18.97 
TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2911 TCGA-AB-2912 TCGA-AB-2913 TCGA-AB-2914 
        1.02         0.99        38.99         9.01        39.98        26.04 
TCGA-AB-2917 TCGA-AB-2919 TCGA-AB-2920 TCGA-AB-2923 TCGA-AB-2924 TCGA-AB-2925 
       39.98         2.01        12.03         1.02         2.96         7.96 
TCGA-AB-2926 TCGA-AB-2927 TCGA-AB-2929 TCGA-AB-2933 TCGA-AB-2934 TCGA-AB-2935 
       14.99         2.93         4.04         4.01         0.92         1.97 
TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2938 TCGA-AB-2939 TCGA-AB-2942 TCGA-AB-2945 
        1.94         7.07         9.96        14.96        21.07         7.99 
TCGA-AB-2947 TCGA-AB-2948 TCGA-AB-2949 TCGA-AB-2950 TCGA-AB-2952 TCGA-AB-2954 
        1.02        19.07        22.98        10.06         1.02        49.05 
TCGA-AB-2955 TCGA-AB-2956 TCGA-AB-2957 TCGA-AB-2959 TCGA-AB-2963 TCGA-AB-2964 
       16.08         6.02        19.99        16.08        53.95        41.98 
TCGA-AB-2965 TCGA-AB-2966 TCGA-AB-2967 TCGA-AB-2968 TCGA-AB-2969 TCGA-AB-2970 
       11.01        28.08        34.03        15.06        37.05        10.03 
TCGA-AB-2971 TCGA-AB-2972 TCGA-AB-2973 TCGA-AB-2974 TCGA-AB-2976 TCGA-AB-2977 
       26.04         0.99        20.02         3.02        30.08         0.99 
TCGA-AB-2978 TCGA-AB-2980 TCGA-AB-2982 TCGA-AB-2983 TCGA-AB-2984 TCGA-AB-2985 
       22.98        22.98         4.90        11.01        38.01         8.98 
TCGA-AB-2986 TCGA-AB-2987 TCGA-AB-2988 TCGA-AB-2989 TCGA-AB-2990 TCGA-AB-2991 
        6.97         6.05         0.99        12.00        15.02        60.03 
TCGA-AB-2992 TCGA-AB-2993 TCGA-AB-2994 TCGA-AB-2995 TCGA-AB-2996 TCGA-AB-2998 
       56.09        25.02        59.11        50.99        51.98         1.02 
TCGA-AB-2999 TCGA-AB-3000 TCGA-AB-3001 TCGA-AB-3002 TCGA-AB-3005 TCGA-AB-3006 
       57.01        41.06        51.98        47.05        69.01        15.91 
TCGA-AB-3007 TCGA-AB-3008 TCGA-AB-3009 TCGA-AB-3011 TCGA-AB-3012 
       51.98        27.02        18.94        61.97        62.04 

  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
              7.04               0.92 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
             29.00              94.06 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
             12.00              12.03 
[1] "7.0 - 29.0 (12.0)" "0.9 - 94.1 (12.0)"
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-3012 
"11Q GAIN WILD-TYPE" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-3012 
"11Q GAIN WILD-TYPE" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-AB-3012 
"11Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D8V2, continuous
D8V3, binary
                    cls
clus                   0   1
  11Q GAIN MUTATED     3   4
  11Q GAIN WILD-TYPE  84 100
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      3    4
  11Q GAIN WILD-TYPE   84  100
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  FEMALE                3                 84
  MALE                  4                100

Clustering(9) Variable = 13Q GAIN MUTATION ANALYSIS
D9V1, survival
                    sevent
clus2                  0   1
  13Q GAIN MUTATED     1   4
  13Q GAIN WILD-TYPE  61 100
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 5                161 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 4                100 
$`13Q GAIN MUTATED`
TCGA-AB-2899 TCGA-AB-2904 TCGA-AB-2917 TCGA-AB-2933 TCGA-AB-2959 
       22.06        16.96        39.98         4.01        16.08 

$`13Q GAIN WILD-TYPE`
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 
       26.04        84.03        18.94        31.04         5.92        94.06 
TCGA-AB-2809 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2813 TCGA-AB-2814 
        2.04         1.02         7.99        12.03         1.02        26.04 
TCGA-AB-2815 TCGA-AB-2816 TCGA-AB-2817 TCGA-AB-2818 TCGA-AB-2819 TCGA-AB-2821 
       26.99         8.05         8.98         9.96        82.06        26.99 
TCGA-AB-2822 TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2828 
       31.96         0.99         6.94        24.03         8.98        75.09 
TCGA-AB-2829 TCGA-AB-2830 TCGA-AB-2831 TCGA-AB-2832 TCGA-AB-2834 TCGA-AB-2835 
        8.98         9.04        21.04        12.00         8.05        55.00 
TCGA-AB-2836 TCGA-AB-2838 TCGA-AB-2839 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2844 
       17.00        12.00        15.98         0.92        46.06         3.98 
TCGA-AB-2845 TCGA-AB-2846 TCGA-AB-2848 TCGA-AB-2849 TCGA-AB-2850 TCGA-AB-2851 
        9.96        46.09        14.96        72.99         1.97         7.96 
TCGA-AB-2853 TCGA-AB-2854 TCGA-AB-2855 TCGA-AB-2856 TCGA-AB-2857 TCGA-AB-2858 
        2.89        12.03         6.94         4.90        10.06        18.94 
TCGA-AB-2859 TCGA-AB-2860 TCGA-AB-2862 TCGA-AB-2863 TCGA-AB-2864 TCGA-AB-2865 
        9.96        14.01        47.01         1.02        18.97         2.01 
TCGA-AB-2866 TCGA-AB-2867 TCGA-AB-2868 TCGA-AB-2869 TCGA-AB-2870 TCGA-AB-2871 
        5.00         6.05         4.96         7.99         5.00         5.03 
TCGA-AB-2872 TCGA-AB-2873 TCGA-AB-2874 TCGA-AB-2875 TCGA-AB-2877 TCGA-AB-2878 
       20.98         8.98        13.02         6.97        20.98        12.00 
TCGA-AB-2879 TCGA-AB-2881 TCGA-AB-2882 TCGA-AB-2883 TCGA-AB-2884 TCGA-AB-2885 
        8.05        12.92        12.00        24.00        24.03         7.04 
TCGA-AB-2886 TCGA-AB-2888 TCGA-AB-2889 TCGA-AB-2892 TCGA-AB-2893 TCGA-AB-2894 
        5.95        10.98         9.99        30.97         6.97         5.92 
TCGA-AB-2895 TCGA-AB-2896 TCGA-AB-2897 TCGA-AB-2898 TCGA-AB-2900 TCGA-AB-2901 
        5.03         7.00         7.99        12.92         6.02         1.91 
TCGA-AB-2905 TCGA-AB-2906 TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2911 TCGA-AB-2912 
       52.93        18.97         1.02         0.99        38.99         9.01 
TCGA-AB-2913 TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2919 TCGA-AB-2920 TCGA-AB-2923 
       39.98        26.04        29.00         2.01        12.03         1.02 
TCGA-AB-2924 TCGA-AB-2925 TCGA-AB-2926 TCGA-AB-2927 TCGA-AB-2929 TCGA-AB-2934 
        2.96         7.96        14.99         2.93         4.04         0.92 
TCGA-AB-2935 TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2938 TCGA-AB-2939 TCGA-AB-2942 
        1.97         1.94         7.07         9.96        14.96        21.07 
TCGA-AB-2945 TCGA-AB-2947 TCGA-AB-2948 TCGA-AB-2949 TCGA-AB-2950 TCGA-AB-2952 
        7.99         1.02        19.07        22.98        10.06         1.02 
TCGA-AB-2954 TCGA-AB-2955 TCGA-AB-2956 TCGA-AB-2957 TCGA-AB-2963 TCGA-AB-2964 
       49.05        16.08         6.02        19.99        53.95        41.98 
TCGA-AB-2965 TCGA-AB-2966 TCGA-AB-2967 TCGA-AB-2968 TCGA-AB-2969 TCGA-AB-2970 
       11.01        28.08        34.03        15.06        37.05        10.03 
TCGA-AB-2971 TCGA-AB-2972 TCGA-AB-2973 TCGA-AB-2974 TCGA-AB-2976 TCGA-AB-2977 
       26.04         0.99        20.02         3.02        30.08         0.99 
TCGA-AB-2978 TCGA-AB-2980 TCGA-AB-2982 TCGA-AB-2983 TCGA-AB-2984 TCGA-AB-2985 
       22.98        22.98         4.90        11.01        38.01         8.98 
TCGA-AB-2986 TCGA-AB-2987 TCGA-AB-2988 TCGA-AB-2989 TCGA-AB-2990 TCGA-AB-2991 
        6.97         6.05         0.99        12.00        15.02        60.03 
TCGA-AB-2992 TCGA-AB-2993 TCGA-AB-2994 TCGA-AB-2995 TCGA-AB-2996 TCGA-AB-2998 
       56.09        25.02        59.11        50.99        51.98         1.02 
TCGA-AB-2999 TCGA-AB-3000 TCGA-AB-3001 TCGA-AB-3002 TCGA-AB-3005 TCGA-AB-3006 
       57.01        41.06        51.98        47.05        69.01        15.91 
TCGA-AB-3007 TCGA-AB-3008 TCGA-AB-3009 TCGA-AB-3011 TCGA-AB-3012 
       51.98        27.02        18.94        61.97        62.04 

  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
              4.01               0.92 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             39.98              94.06 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             16.96              12.00 
[1] "4.0 - 40.0 (17.0)" "0.9 - 94.1 (12.0)"
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
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        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-AB-3012 
"13Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D9V2, continuous
D9V3, binary
                    cls
clus                   0   1
  13Q GAIN MUTATED     2   4
  13Q GAIN WILD-TYPE  85 100
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      2    4
  13Q GAIN WILD-TYPE   85  100
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  FEMALE                2                 85
  MALE                  4                100

Clustering(10) Variable = 17Q GAIN MUTATION ANALYSIS
D10V1, survival
                    sevent
clus2                  0   1
  17Q GAIN MUTATED     1   2
  17Q GAIN WILD-TYPE  61 102
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 3                163 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 2                102 
$`17Q GAIN MUTATED`
TCGA-AB-2855 TCGA-AB-2917 TCGA-AB-2933 
        6.94        39.98         4.01 

$`17Q GAIN WILD-TYPE`
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 
       26.04        84.03        18.94        31.04         5.92        94.06 
TCGA-AB-2809 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2813 TCGA-AB-2814 
        2.04         1.02         7.99        12.03         1.02        26.04 
TCGA-AB-2815 TCGA-AB-2816 TCGA-AB-2817 TCGA-AB-2818 TCGA-AB-2819 TCGA-AB-2821 
       26.99         8.05         8.98         9.96        82.06        26.99 
TCGA-AB-2822 TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2828 
       31.96         0.99         6.94        24.03         8.98        75.09 
TCGA-AB-2829 TCGA-AB-2830 TCGA-AB-2831 TCGA-AB-2832 TCGA-AB-2834 TCGA-AB-2835 
        8.98         9.04        21.04        12.00         8.05        55.00 
TCGA-AB-2836 TCGA-AB-2838 TCGA-AB-2839 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2844 
       17.00        12.00        15.98         0.92        46.06         3.98 
TCGA-AB-2845 TCGA-AB-2846 TCGA-AB-2848 TCGA-AB-2849 TCGA-AB-2850 TCGA-AB-2851 
        9.96        46.09        14.96        72.99         1.97         7.96 
TCGA-AB-2853 TCGA-AB-2854 TCGA-AB-2856 TCGA-AB-2857 TCGA-AB-2858 TCGA-AB-2859 
        2.89        12.03         4.90        10.06        18.94         9.96 
TCGA-AB-2860 TCGA-AB-2862 TCGA-AB-2863 TCGA-AB-2864 TCGA-AB-2865 TCGA-AB-2866 
       14.01        47.01         1.02        18.97         2.01         5.00 
TCGA-AB-2867 TCGA-AB-2868 TCGA-AB-2869 TCGA-AB-2870 TCGA-AB-2871 TCGA-AB-2872 
        6.05         4.96         7.99         5.00         5.03        20.98 
TCGA-AB-2873 TCGA-AB-2874 TCGA-AB-2875 TCGA-AB-2877 TCGA-AB-2878 TCGA-AB-2879 
        8.98        13.02         6.97        20.98        12.00         8.05 
TCGA-AB-2881 TCGA-AB-2882 TCGA-AB-2883 TCGA-AB-2884 TCGA-AB-2885 TCGA-AB-2886 
       12.92        12.00        24.00        24.03         7.04         5.95 
TCGA-AB-2888 TCGA-AB-2889 TCGA-AB-2892 TCGA-AB-2893 TCGA-AB-2894 TCGA-AB-2895 
       10.98         9.99        30.97         6.97         5.92         5.03 
TCGA-AB-2896 TCGA-AB-2897 TCGA-AB-2898 TCGA-AB-2899 TCGA-AB-2900 TCGA-AB-2901 
        7.00         7.99        12.92        22.06         6.02         1.91 
TCGA-AB-2904 TCGA-AB-2905 TCGA-AB-2906 TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2911 
       16.96        52.93        18.97         1.02         0.99        38.99 
TCGA-AB-2912 TCGA-AB-2913 TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2919 TCGA-AB-2920 
        9.01        39.98        26.04        29.00         2.01        12.03 
TCGA-AB-2923 TCGA-AB-2924 TCGA-AB-2925 TCGA-AB-2926 TCGA-AB-2927 TCGA-AB-2929 
        1.02         2.96         7.96        14.99         2.93         4.04 
TCGA-AB-2934 TCGA-AB-2935 TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2938 TCGA-AB-2939 
        0.92         1.97         1.94         7.07         9.96        14.96 
TCGA-AB-2942 TCGA-AB-2945 TCGA-AB-2947 TCGA-AB-2948 TCGA-AB-2949 TCGA-AB-2950 
       21.07         7.99         1.02        19.07        22.98        10.06 
TCGA-AB-2952 TCGA-AB-2954 TCGA-AB-2955 TCGA-AB-2956 TCGA-AB-2957 TCGA-AB-2959 
        1.02        49.05        16.08         6.02        19.99        16.08 
TCGA-AB-2963 TCGA-AB-2964 TCGA-AB-2965 TCGA-AB-2966 TCGA-AB-2967 TCGA-AB-2968 
       53.95        41.98        11.01        28.08        34.03        15.06 
TCGA-AB-2969 TCGA-AB-2970 TCGA-AB-2971 TCGA-AB-2972 TCGA-AB-2973 TCGA-AB-2974 
       37.05        10.03        26.04         0.99        20.02         3.02 
TCGA-AB-2976 TCGA-AB-2977 TCGA-AB-2978 TCGA-AB-2980 TCGA-AB-2982 TCGA-AB-2983 
       30.08         0.99        22.98        22.98         4.90        11.01 
TCGA-AB-2984 TCGA-AB-2985 TCGA-AB-2986 TCGA-AB-2987 TCGA-AB-2988 TCGA-AB-2989 
       38.01         8.98         6.97         6.05         0.99        12.00 
TCGA-AB-2990 TCGA-AB-2991 TCGA-AB-2992 TCGA-AB-2993 TCGA-AB-2994 TCGA-AB-2995 
       15.02        60.03        56.09        25.02        59.11        50.99 
TCGA-AB-2996 TCGA-AB-2998 TCGA-AB-2999 TCGA-AB-3000 TCGA-AB-3001 TCGA-AB-3002 
       51.98         1.02        57.01        41.06        51.98        47.05 
TCGA-AB-3005 TCGA-AB-3006 TCGA-AB-3007 TCGA-AB-3008 TCGA-AB-3009 TCGA-AB-3011 
       69.01        15.91        51.98        27.02        18.94        61.97 
TCGA-AB-3012 
       62.04 

  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              4.01               0.92 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
             39.98              94.06 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              6.94              12.03 
[1] "4.0 - 40.0 (6.9)"  "0.9 - 94.1 (12.0)"
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-3012 
"17Q GAIN WILD-TYPE" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-3012 
"17Q GAIN WILD-TYPE" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-AB-3012 
"17Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D10V2, continuous
D10V3, binary
                    cls
clus                   0   1
  17Q GAIN MUTATED     1   2
  17Q GAIN WILD-TYPE  86 102
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      1    2
  17Q GAIN WILD-TYPE   86  102
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  FEMALE                1                 86
  MALE                  2                102

Clustering(11) Variable = 19P GAIN MUTATION ANALYSIS
D11V1, survival
                    sevent
clus2                  0   1
  19P GAIN MUTATED     2   3
  19P GAIN WILD-TYPE  60 101
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 5                161 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 3                101 
$`19P GAIN MUTATED`
TCGA-AB-2855 TCGA-AB-2883 TCGA-AB-2917 TCGA-AB-2938 TCGA-AB-2956 
        6.94        24.00        39.98         9.96         6.02 

$`19P GAIN WILD-TYPE`
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 
       26.04        84.03        18.94        31.04         5.92        94.06 
TCGA-AB-2809 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2813 TCGA-AB-2814 
        2.04         1.02         7.99        12.03         1.02        26.04 
TCGA-AB-2815 TCGA-AB-2816 TCGA-AB-2817 TCGA-AB-2818 TCGA-AB-2819 TCGA-AB-2821 
       26.99         8.05         8.98         9.96        82.06        26.99 
TCGA-AB-2822 TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2828 
       31.96         0.99         6.94        24.03         8.98        75.09 
TCGA-AB-2829 TCGA-AB-2830 TCGA-AB-2831 TCGA-AB-2832 TCGA-AB-2834 TCGA-AB-2835 
        8.98         9.04        21.04        12.00         8.05        55.00 
TCGA-AB-2836 TCGA-AB-2838 TCGA-AB-2839 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2844 
       17.00        12.00        15.98         0.92        46.06         3.98 
TCGA-AB-2845 TCGA-AB-2846 TCGA-AB-2848 TCGA-AB-2849 TCGA-AB-2850 TCGA-AB-2851 
        9.96        46.09        14.96        72.99         1.97         7.96 
TCGA-AB-2853 TCGA-AB-2854 TCGA-AB-2856 TCGA-AB-2857 TCGA-AB-2858 TCGA-AB-2859 
        2.89        12.03         4.90        10.06        18.94         9.96 
TCGA-AB-2860 TCGA-AB-2862 TCGA-AB-2863 TCGA-AB-2864 TCGA-AB-2865 TCGA-AB-2866 
       14.01        47.01         1.02        18.97         2.01         5.00 
TCGA-AB-2867 TCGA-AB-2868 TCGA-AB-2869 TCGA-AB-2870 TCGA-AB-2871 TCGA-AB-2872 
        6.05         4.96         7.99         5.00         5.03        20.98 
TCGA-AB-2873 TCGA-AB-2874 TCGA-AB-2875 TCGA-AB-2877 TCGA-AB-2878 TCGA-AB-2879 
        8.98        13.02         6.97        20.98        12.00         8.05 
TCGA-AB-2881 TCGA-AB-2882 TCGA-AB-2884 TCGA-AB-2885 TCGA-AB-2886 TCGA-AB-2888 
       12.92        12.00        24.03         7.04         5.95        10.98 
TCGA-AB-2889 TCGA-AB-2892 TCGA-AB-2893 TCGA-AB-2894 TCGA-AB-2895 TCGA-AB-2896 
        9.99        30.97         6.97         5.92         5.03         7.00 
TCGA-AB-2897 TCGA-AB-2898 TCGA-AB-2899 TCGA-AB-2900 TCGA-AB-2901 TCGA-AB-2904 
        7.99        12.92        22.06         6.02         1.91        16.96 
TCGA-AB-2905 TCGA-AB-2906 TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2911 TCGA-AB-2912 
       52.93        18.97         1.02         0.99        38.99         9.01 
TCGA-AB-2913 TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2919 TCGA-AB-2920 TCGA-AB-2923 
       39.98        26.04        29.00         2.01        12.03         1.02 
TCGA-AB-2924 TCGA-AB-2925 TCGA-AB-2926 TCGA-AB-2927 TCGA-AB-2929 TCGA-AB-2933 
        2.96         7.96        14.99         2.93         4.04         4.01 
TCGA-AB-2934 TCGA-AB-2935 TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2939 TCGA-AB-2942 
        0.92         1.97         1.94         7.07        14.96        21.07 
TCGA-AB-2945 TCGA-AB-2947 TCGA-AB-2948 TCGA-AB-2949 TCGA-AB-2950 TCGA-AB-2952 
        7.99         1.02        19.07        22.98        10.06         1.02 
TCGA-AB-2954 TCGA-AB-2955 TCGA-AB-2957 TCGA-AB-2959 TCGA-AB-2963 TCGA-AB-2964 
       49.05        16.08        19.99        16.08        53.95        41.98 
TCGA-AB-2965 TCGA-AB-2966 TCGA-AB-2967 TCGA-AB-2968 TCGA-AB-2969 TCGA-AB-2970 
       11.01        28.08        34.03        15.06        37.05        10.03 
TCGA-AB-2971 TCGA-AB-2972 TCGA-AB-2973 TCGA-AB-2974 TCGA-AB-2976 TCGA-AB-2977 
       26.04         0.99        20.02         3.02        30.08         0.99 
TCGA-AB-2978 TCGA-AB-2980 TCGA-AB-2982 TCGA-AB-2983 TCGA-AB-2984 TCGA-AB-2985 
       22.98        22.98         4.90        11.01        38.01         8.98 
TCGA-AB-2986 TCGA-AB-2987 TCGA-AB-2988 TCGA-AB-2989 TCGA-AB-2990 TCGA-AB-2991 
        6.97         6.05         0.99        12.00        15.02        60.03 
TCGA-AB-2992 TCGA-AB-2993 TCGA-AB-2994 TCGA-AB-2995 TCGA-AB-2996 TCGA-AB-2998 
       56.09        25.02        59.11        50.99        51.98         1.02 
TCGA-AB-2999 TCGA-AB-3000 TCGA-AB-3001 TCGA-AB-3002 TCGA-AB-3005 TCGA-AB-3006 
       57.01        41.06        51.98        47.05        69.01        15.91 
TCGA-AB-3007 TCGA-AB-3008 TCGA-AB-3009 TCGA-AB-3011 TCGA-AB-3012 
       51.98        27.02        18.94        61.97        62.04 

  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              6.02               0.92 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
             39.98              94.06 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              9.96              12.03 
[1] "6.0 - 40.0 (10.0)" "0.9 - 94.1 (12.0)"
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-3012 
"19P GAIN WILD-TYPE" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-3012 
"19P GAIN WILD-TYPE" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-AB-3012 
"19P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D11V2, continuous
D11V3, binary
                    cls
clus                  0  1
  19P GAIN MUTATED    1  5
  19P GAIN WILD-TYPE 86 99
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      1    5
  19P GAIN WILD-TYPE   86   99
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  FEMALE                1                 86
  MALE                  5                 99

Clustering(12) Variable = 19Q GAIN MUTATION ANALYSIS
D12V1, survival
                    sevent
clus2                  0   1
  19Q GAIN MUTATED     2   3
  19Q GAIN WILD-TYPE  60 101
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 5                161 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 3                101 
$`19Q GAIN MUTATED`
TCGA-AB-2855 TCGA-AB-2883 TCGA-AB-2917 TCGA-AB-2938 TCGA-AB-2956 
        6.94        24.00        39.98         9.96         6.02 

$`19Q GAIN WILD-TYPE`
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 
       26.04        84.03        18.94        31.04         5.92        94.06 
TCGA-AB-2809 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2813 TCGA-AB-2814 
        2.04         1.02         7.99        12.03         1.02        26.04 
TCGA-AB-2815 TCGA-AB-2816 TCGA-AB-2817 TCGA-AB-2818 TCGA-AB-2819 TCGA-AB-2821 
       26.99         8.05         8.98         9.96        82.06        26.99 
TCGA-AB-2822 TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2828 
       31.96         0.99         6.94        24.03         8.98        75.09 
TCGA-AB-2829 TCGA-AB-2830 TCGA-AB-2831 TCGA-AB-2832 TCGA-AB-2834 TCGA-AB-2835 
        8.98         9.04        21.04        12.00         8.05        55.00 
TCGA-AB-2836 TCGA-AB-2838 TCGA-AB-2839 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2844 
       17.00        12.00        15.98         0.92        46.06         3.98 
TCGA-AB-2845 TCGA-AB-2846 TCGA-AB-2848 TCGA-AB-2849 TCGA-AB-2850 TCGA-AB-2851 
        9.96        46.09        14.96        72.99         1.97         7.96 
TCGA-AB-2853 TCGA-AB-2854 TCGA-AB-2856 TCGA-AB-2857 TCGA-AB-2858 TCGA-AB-2859 
        2.89        12.03         4.90        10.06        18.94         9.96 
TCGA-AB-2860 TCGA-AB-2862 TCGA-AB-2863 TCGA-AB-2864 TCGA-AB-2865 TCGA-AB-2866 
       14.01        47.01         1.02        18.97         2.01         5.00 
TCGA-AB-2867 TCGA-AB-2868 TCGA-AB-2869 TCGA-AB-2870 TCGA-AB-2871 TCGA-AB-2872 
        6.05         4.96         7.99         5.00         5.03        20.98 
TCGA-AB-2873 TCGA-AB-2874 TCGA-AB-2875 TCGA-AB-2877 TCGA-AB-2878 TCGA-AB-2879 
        8.98        13.02         6.97        20.98        12.00         8.05 
TCGA-AB-2881 TCGA-AB-2882 TCGA-AB-2884 TCGA-AB-2885 TCGA-AB-2886 TCGA-AB-2888 
       12.92        12.00        24.03         7.04         5.95        10.98 
TCGA-AB-2889 TCGA-AB-2892 TCGA-AB-2893 TCGA-AB-2894 TCGA-AB-2895 TCGA-AB-2896 
        9.99        30.97         6.97         5.92         5.03         7.00 
TCGA-AB-2897 TCGA-AB-2898 TCGA-AB-2899 TCGA-AB-2900 TCGA-AB-2901 TCGA-AB-2904 
        7.99        12.92        22.06         6.02         1.91        16.96 
TCGA-AB-2905 TCGA-AB-2906 TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2911 TCGA-AB-2912 
       52.93        18.97         1.02         0.99        38.99         9.01 
TCGA-AB-2913 TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2919 TCGA-AB-2920 TCGA-AB-2923 
       39.98        26.04        29.00         2.01        12.03         1.02 
TCGA-AB-2924 TCGA-AB-2925 TCGA-AB-2926 TCGA-AB-2927 TCGA-AB-2929 TCGA-AB-2933 
        2.96         7.96        14.99         2.93         4.04         4.01 
TCGA-AB-2934 TCGA-AB-2935 TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2939 TCGA-AB-2942 
        0.92         1.97         1.94         7.07        14.96        21.07 
TCGA-AB-2945 TCGA-AB-2947 TCGA-AB-2948 TCGA-AB-2949 TCGA-AB-2950 TCGA-AB-2952 
        7.99         1.02        19.07        22.98        10.06         1.02 
TCGA-AB-2954 TCGA-AB-2955 TCGA-AB-2957 TCGA-AB-2959 TCGA-AB-2963 TCGA-AB-2964 
       49.05        16.08        19.99        16.08        53.95        41.98 
TCGA-AB-2965 TCGA-AB-2966 TCGA-AB-2967 TCGA-AB-2968 TCGA-AB-2969 TCGA-AB-2970 
       11.01        28.08        34.03        15.06        37.05        10.03 
TCGA-AB-2971 TCGA-AB-2972 TCGA-AB-2973 TCGA-AB-2974 TCGA-AB-2976 TCGA-AB-2977 
       26.04         0.99        20.02         3.02        30.08         0.99 
TCGA-AB-2978 TCGA-AB-2980 TCGA-AB-2982 TCGA-AB-2983 TCGA-AB-2984 TCGA-AB-2985 
       22.98        22.98         4.90        11.01        38.01         8.98 
TCGA-AB-2986 TCGA-AB-2987 TCGA-AB-2988 TCGA-AB-2989 TCGA-AB-2990 TCGA-AB-2991 
        6.97         6.05         0.99        12.00        15.02        60.03 
TCGA-AB-2992 TCGA-AB-2993 TCGA-AB-2994 TCGA-AB-2995 TCGA-AB-2996 TCGA-AB-2998 
       56.09        25.02        59.11        50.99        51.98         1.02 
TCGA-AB-2999 TCGA-AB-3000 TCGA-AB-3001 TCGA-AB-3002 TCGA-AB-3005 TCGA-AB-3006 
       57.01        41.06        51.98        47.05        69.01        15.91 
TCGA-AB-3007 TCGA-AB-3008 TCGA-AB-3009 TCGA-AB-3011 TCGA-AB-3012 
       51.98        27.02        18.94        61.97        62.04 

  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
              6.02               0.92 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
             39.98              94.06 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
              9.96              12.03 
[1] "6.0 - 40.0 (10.0)" "0.9 - 94.1 (12.0)"
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-3012 
"19Q GAIN WILD-TYPE" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-3012 
"19Q GAIN WILD-TYPE" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-AB-3012 
"19Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D12V2, continuous
D12V3, binary
                    cls
clus                  0  1
  19Q GAIN MUTATED    1  5
  19Q GAIN WILD-TYPE 86 99
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      1    5
  19Q GAIN WILD-TYPE   86   99
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  FEMALE                1                 86
  MALE                  5                 99

Clustering(13) Variable = 21Q GAIN MUTATION ANALYSIS
D13V1, survival
                    sevent
clus2                 0  1
  21Q GAIN MUTATED    2  5
  21Q GAIN WILD-TYPE 60 99
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 7                159 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 5                 99 
$`21Q GAIN MUTATED`
TCGA-AB-2807 TCGA-AB-2813 TCGA-AB-2829 TCGA-AB-2865 TCGA-AB-2868 TCGA-AB-2883 
        5.92         1.02         8.98         2.01         4.96        24.00 
TCGA-AB-2901 
        1.91 

$`21Q GAIN WILD-TYPE`
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2808 TCGA-AB-2809 
       26.04        84.03        18.94        31.04        94.06         2.04 
TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2814 TCGA-AB-2815 TCGA-AB-2816 
        1.02         7.99        12.03        26.04        26.99         8.05 
TCGA-AB-2817 TCGA-AB-2818 TCGA-AB-2819 TCGA-AB-2821 TCGA-AB-2822 TCGA-AB-2824 
        8.98         9.96        82.06        26.99        31.96         0.99 
TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2828 TCGA-AB-2830 TCGA-AB-2831 
        6.94        24.03         8.98        75.09         9.04        21.04 
TCGA-AB-2832 TCGA-AB-2834 TCGA-AB-2835 TCGA-AB-2836 TCGA-AB-2838 TCGA-AB-2839 
       12.00         8.05        55.00        17.00        12.00        15.98 
TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2844 TCGA-AB-2845 TCGA-AB-2846 TCGA-AB-2848 
        0.92        46.06         3.98         9.96        46.09        14.96 
TCGA-AB-2849 TCGA-AB-2850 TCGA-AB-2851 TCGA-AB-2853 TCGA-AB-2854 TCGA-AB-2855 
       72.99         1.97         7.96         2.89        12.03         6.94 
TCGA-AB-2856 TCGA-AB-2857 TCGA-AB-2858 TCGA-AB-2859 TCGA-AB-2860 TCGA-AB-2862 
        4.90        10.06        18.94         9.96        14.01        47.01 
TCGA-AB-2863 TCGA-AB-2864 TCGA-AB-2866 TCGA-AB-2867 TCGA-AB-2869 TCGA-AB-2870 
        1.02        18.97         5.00         6.05         7.99         5.00 
TCGA-AB-2871 TCGA-AB-2872 TCGA-AB-2873 TCGA-AB-2874 TCGA-AB-2875 TCGA-AB-2877 
        5.03        20.98         8.98        13.02         6.97        20.98 
TCGA-AB-2878 TCGA-AB-2879 TCGA-AB-2881 TCGA-AB-2882 TCGA-AB-2884 TCGA-AB-2885 
       12.00         8.05        12.92        12.00        24.03         7.04 
TCGA-AB-2886 TCGA-AB-2888 TCGA-AB-2889 TCGA-AB-2892 TCGA-AB-2893 TCGA-AB-2894 
        5.95        10.98         9.99        30.97         6.97         5.92 
TCGA-AB-2895 TCGA-AB-2896 TCGA-AB-2897 TCGA-AB-2898 TCGA-AB-2899 TCGA-AB-2900 
        5.03         7.00         7.99        12.92        22.06         6.02 
TCGA-AB-2904 TCGA-AB-2905 TCGA-AB-2906 TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2911 
       16.96        52.93        18.97         1.02         0.99        38.99 
TCGA-AB-2912 TCGA-AB-2913 TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2917 TCGA-AB-2919 
        9.01        39.98        26.04        29.00        39.98         2.01 
TCGA-AB-2920 TCGA-AB-2923 TCGA-AB-2924 TCGA-AB-2925 TCGA-AB-2926 TCGA-AB-2927 
       12.03         1.02         2.96         7.96        14.99         2.93 
TCGA-AB-2929 TCGA-AB-2933 TCGA-AB-2934 TCGA-AB-2935 TCGA-AB-2936 TCGA-AB-2937 
        4.04         4.01         0.92         1.97         1.94         7.07 
TCGA-AB-2938 TCGA-AB-2939 TCGA-AB-2942 TCGA-AB-2945 TCGA-AB-2947 TCGA-AB-2948 
        9.96        14.96        21.07         7.99         1.02        19.07 
TCGA-AB-2949 TCGA-AB-2950 TCGA-AB-2952 TCGA-AB-2954 TCGA-AB-2955 TCGA-AB-2956 
       22.98        10.06         1.02        49.05        16.08         6.02 
TCGA-AB-2957 TCGA-AB-2959 TCGA-AB-2963 TCGA-AB-2964 TCGA-AB-2965 TCGA-AB-2966 
       19.99        16.08        53.95        41.98        11.01        28.08 
TCGA-AB-2967 TCGA-AB-2968 TCGA-AB-2969 TCGA-AB-2970 TCGA-AB-2971 TCGA-AB-2972 
       34.03        15.06        37.05        10.03        26.04         0.99 
TCGA-AB-2973 TCGA-AB-2974 TCGA-AB-2976 TCGA-AB-2977 TCGA-AB-2978 TCGA-AB-2980 
       20.02         3.02        30.08         0.99        22.98        22.98 
TCGA-AB-2982 TCGA-AB-2983 TCGA-AB-2984 TCGA-AB-2985 TCGA-AB-2986 TCGA-AB-2987 
        4.90        11.01        38.01         8.98         6.97         6.05 
TCGA-AB-2988 TCGA-AB-2989 TCGA-AB-2990 TCGA-AB-2991 TCGA-AB-2992 TCGA-AB-2993 
        0.99        12.00        15.02        60.03        56.09        25.02 
TCGA-AB-2994 TCGA-AB-2995 TCGA-AB-2996 TCGA-AB-2998 TCGA-AB-2999 TCGA-AB-3000 
       59.11        50.99        51.98         1.02        57.01        41.06 
TCGA-AB-3001 TCGA-AB-3002 TCGA-AB-3005 TCGA-AB-3006 TCGA-AB-3007 TCGA-AB-3008 
       51.98        47.05        69.01        15.91        51.98        27.02 
TCGA-AB-3009 TCGA-AB-3011 TCGA-AB-3012 
       18.94        61.97        62.04 

  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
              1.02               0.92 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
             24.00              94.06 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
              4.96              12.03 
[1] "1.0 - 24.0 (5.0)"  "0.9 - 94.1 (12.0)"
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-3012 
"21Q GAIN WILD-TYPE" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-3012 
"21Q GAIN WILD-TYPE" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-AB-3012 
"21Q GAIN WILD-TYPE" 
[1] "hr=" "2.9"
D13V2, continuous
D13V3, binary
                    cls
clus                  0  1
  21Q GAIN MUTATED    1  7
  21Q GAIN WILD-TYPE 86 97
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      1    7
  21Q GAIN WILD-TYPE   86   97
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  FEMALE                1                 86
  MALE                  7                 97

Clustering(14) Variable = 22Q GAIN MUTATION ANALYSIS
D14V1, survival
                    sevent
clus2                 0  1
  22Q GAIN MUTATED    2  5
  22Q GAIN WILD-TYPE 60 99
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 7                159 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 5                 99 
$`22Q GAIN MUTATED`
TCGA-AB-2860 TCGA-AB-2868 TCGA-AB-2904 TCGA-AB-2908 TCGA-AB-2920 TCGA-AB-2949 
       14.01         4.96        16.96         1.02        12.03        22.98 
TCGA-AB-2954 
       49.05 

$`22Q GAIN WILD-TYPE`
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 
       26.04        84.03        18.94        31.04         5.92        94.06 
TCGA-AB-2809 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2813 TCGA-AB-2814 
        2.04         1.02         7.99        12.03         1.02        26.04 
TCGA-AB-2815 TCGA-AB-2816 TCGA-AB-2817 TCGA-AB-2818 TCGA-AB-2819 TCGA-AB-2821 
       26.99         8.05         8.98         9.96        82.06        26.99 
TCGA-AB-2822 TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2828 
       31.96         0.99         6.94        24.03         8.98        75.09 
TCGA-AB-2829 TCGA-AB-2830 TCGA-AB-2831 TCGA-AB-2832 TCGA-AB-2834 TCGA-AB-2835 
        8.98         9.04        21.04        12.00         8.05        55.00 
TCGA-AB-2836 TCGA-AB-2838 TCGA-AB-2839 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2844 
       17.00        12.00        15.98         0.92        46.06         3.98 
TCGA-AB-2845 TCGA-AB-2846 TCGA-AB-2848 TCGA-AB-2849 TCGA-AB-2850 TCGA-AB-2851 
        9.96        46.09        14.96        72.99         1.97         7.96 
TCGA-AB-2853 TCGA-AB-2854 TCGA-AB-2855 TCGA-AB-2856 TCGA-AB-2857 TCGA-AB-2858 
        2.89        12.03         6.94         4.90        10.06        18.94 
TCGA-AB-2859 TCGA-AB-2862 TCGA-AB-2863 TCGA-AB-2864 TCGA-AB-2865 TCGA-AB-2866 
        9.96        47.01         1.02        18.97         2.01         5.00 
TCGA-AB-2867 TCGA-AB-2869 TCGA-AB-2870 TCGA-AB-2871 TCGA-AB-2872 TCGA-AB-2873 
        6.05         7.99         5.00         5.03        20.98         8.98 
TCGA-AB-2874 TCGA-AB-2875 TCGA-AB-2877 TCGA-AB-2878 TCGA-AB-2879 TCGA-AB-2881 
       13.02         6.97        20.98        12.00         8.05        12.92 
TCGA-AB-2882 TCGA-AB-2883 TCGA-AB-2884 TCGA-AB-2885 TCGA-AB-2886 TCGA-AB-2888 
       12.00        24.00        24.03         7.04         5.95        10.98 
TCGA-AB-2889 TCGA-AB-2892 TCGA-AB-2893 TCGA-AB-2894 TCGA-AB-2895 TCGA-AB-2896 
        9.99        30.97         6.97         5.92         5.03         7.00 
TCGA-AB-2897 TCGA-AB-2898 TCGA-AB-2899 TCGA-AB-2900 TCGA-AB-2901 TCGA-AB-2905 
        7.99        12.92        22.06         6.02         1.91        52.93 
TCGA-AB-2906 TCGA-AB-2909 TCGA-AB-2911 TCGA-AB-2912 TCGA-AB-2913 TCGA-AB-2914 
       18.97         0.99        38.99         9.01        39.98        26.04 
TCGA-AB-2916 TCGA-AB-2917 TCGA-AB-2919 TCGA-AB-2923 TCGA-AB-2924 TCGA-AB-2925 
       29.00        39.98         2.01         1.02         2.96         7.96 
TCGA-AB-2926 TCGA-AB-2927 TCGA-AB-2929 TCGA-AB-2933 TCGA-AB-2934 TCGA-AB-2935 
       14.99         2.93         4.04         4.01         0.92         1.97 
TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2938 TCGA-AB-2939 TCGA-AB-2942 TCGA-AB-2945 
        1.94         7.07         9.96        14.96        21.07         7.99 
TCGA-AB-2947 TCGA-AB-2948 TCGA-AB-2950 TCGA-AB-2952 TCGA-AB-2955 TCGA-AB-2956 
        1.02        19.07        10.06         1.02        16.08         6.02 
TCGA-AB-2957 TCGA-AB-2959 TCGA-AB-2963 TCGA-AB-2964 TCGA-AB-2965 TCGA-AB-2966 
       19.99        16.08        53.95        41.98        11.01        28.08 
TCGA-AB-2967 TCGA-AB-2968 TCGA-AB-2969 TCGA-AB-2970 TCGA-AB-2971 TCGA-AB-2972 
       34.03        15.06        37.05        10.03        26.04         0.99 
TCGA-AB-2973 TCGA-AB-2974 TCGA-AB-2976 TCGA-AB-2977 TCGA-AB-2978 TCGA-AB-2980 
       20.02         3.02        30.08         0.99        22.98        22.98 
TCGA-AB-2982 TCGA-AB-2983 TCGA-AB-2984 TCGA-AB-2985 TCGA-AB-2986 TCGA-AB-2987 
        4.90        11.01        38.01         8.98         6.97         6.05 
TCGA-AB-2988 TCGA-AB-2989 TCGA-AB-2990 TCGA-AB-2991 TCGA-AB-2992 TCGA-AB-2993 
        0.99        12.00        15.02        60.03        56.09        25.02 
TCGA-AB-2994 TCGA-AB-2995 TCGA-AB-2996 TCGA-AB-2998 TCGA-AB-2999 TCGA-AB-3000 
       59.11        50.99        51.98         1.02        57.01        41.06 
TCGA-AB-3001 TCGA-AB-3002 TCGA-AB-3005 TCGA-AB-3006 TCGA-AB-3007 TCGA-AB-3008 
       51.98        47.05        69.01        15.91        51.98        27.02 
TCGA-AB-3009 TCGA-AB-3011 TCGA-AB-3012 
       18.94        61.97        62.04 

  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
              1.02               0.92 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
             49.05              94.06 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
             14.01              12.00 
[1] "1.0 - 49.0 (14.0)" "0.9 - 94.1 (12.0)"
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-3012 
"22Q GAIN WILD-TYPE" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-3012 
"22Q GAIN WILD-TYPE" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-AB-3012 
"22Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D14V2, continuous
D14V3, binary
                    cls
clus                  0  1
  22Q GAIN MUTATED    3  6
  22Q GAIN WILD-TYPE 84 98
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      3    6
  22Q GAIN WILD-TYPE   84   98
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  FEMALE                3                 84
  MALE                  6                 98

Clustering(15) Variable = XQ GAIN MUTATION ANALYSIS
D15V1, survival
                   sevent
clus2                 0   1
  XQ GAIN MUTATED     1   1
  XQ GAIN WILD-TYPE  61 103
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                2               164 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                1               103 
$`XQ GAIN MUTATED`
TCGA-AB-2883 TCGA-AB-2929 
       24.00         4.04 

$`XQ GAIN WILD-TYPE`
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 
       26.04        84.03        18.94        31.04         5.92        94.06 
TCGA-AB-2809 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2813 TCGA-AB-2814 
        2.04         1.02         7.99        12.03         1.02        26.04 
TCGA-AB-2815 TCGA-AB-2816 TCGA-AB-2817 TCGA-AB-2818 TCGA-AB-2819 TCGA-AB-2821 
       26.99         8.05         8.98         9.96        82.06        26.99 
TCGA-AB-2822 TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2828 
       31.96         0.99         6.94        24.03         8.98        75.09 
TCGA-AB-2829 TCGA-AB-2830 TCGA-AB-2831 TCGA-AB-2832 TCGA-AB-2834 TCGA-AB-2835 
        8.98         9.04        21.04        12.00         8.05        55.00 
TCGA-AB-2836 TCGA-AB-2838 TCGA-AB-2839 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2844 
       17.00        12.00        15.98         0.92        46.06         3.98 
TCGA-AB-2845 TCGA-AB-2846 TCGA-AB-2848 TCGA-AB-2849 TCGA-AB-2850 TCGA-AB-2851 
        9.96        46.09        14.96        72.99         1.97         7.96 
TCGA-AB-2853 TCGA-AB-2854 TCGA-AB-2855 TCGA-AB-2856 TCGA-AB-2857 TCGA-AB-2858 
        2.89        12.03         6.94         4.90        10.06        18.94 
TCGA-AB-2859 TCGA-AB-2860 TCGA-AB-2862 TCGA-AB-2863 TCGA-AB-2864 TCGA-AB-2865 
        9.96        14.01        47.01         1.02        18.97         2.01 
TCGA-AB-2866 TCGA-AB-2867 TCGA-AB-2868 TCGA-AB-2869 TCGA-AB-2870 TCGA-AB-2871 
        5.00         6.05         4.96         7.99         5.00         5.03 
TCGA-AB-2872 TCGA-AB-2873 TCGA-AB-2874 TCGA-AB-2875 TCGA-AB-2877 TCGA-AB-2878 
       20.98         8.98        13.02         6.97        20.98        12.00 
TCGA-AB-2879 TCGA-AB-2881 TCGA-AB-2882 TCGA-AB-2884 TCGA-AB-2885 TCGA-AB-2886 
        8.05        12.92        12.00        24.03         7.04         5.95 
TCGA-AB-2888 TCGA-AB-2889 TCGA-AB-2892 TCGA-AB-2893 TCGA-AB-2894 TCGA-AB-2895 
       10.98         9.99        30.97         6.97         5.92         5.03 
TCGA-AB-2896 TCGA-AB-2897 TCGA-AB-2898 TCGA-AB-2899 TCGA-AB-2900 TCGA-AB-2901 
        7.00         7.99        12.92        22.06         6.02         1.91 
TCGA-AB-2904 TCGA-AB-2905 TCGA-AB-2906 TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2911 
       16.96        52.93        18.97         1.02         0.99        38.99 
TCGA-AB-2912 TCGA-AB-2913 TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2917 TCGA-AB-2919 
        9.01        39.98        26.04        29.00        39.98         2.01 
TCGA-AB-2920 TCGA-AB-2923 TCGA-AB-2924 TCGA-AB-2925 TCGA-AB-2926 TCGA-AB-2927 
       12.03         1.02         2.96         7.96        14.99         2.93 
TCGA-AB-2933 TCGA-AB-2934 TCGA-AB-2935 TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2938 
        4.01         0.92         1.97         1.94         7.07         9.96 
TCGA-AB-2939 TCGA-AB-2942 TCGA-AB-2945 TCGA-AB-2947 TCGA-AB-2948 TCGA-AB-2949 
       14.96        21.07         7.99         1.02        19.07        22.98 
TCGA-AB-2950 TCGA-AB-2952 TCGA-AB-2954 TCGA-AB-2955 TCGA-AB-2956 TCGA-AB-2957 
       10.06         1.02        49.05        16.08         6.02        19.99 
TCGA-AB-2959 TCGA-AB-2963 TCGA-AB-2964 TCGA-AB-2965 TCGA-AB-2966 TCGA-AB-2967 
       16.08        53.95        41.98        11.01        28.08        34.03 
TCGA-AB-2968 TCGA-AB-2969 TCGA-AB-2970 TCGA-AB-2971 TCGA-AB-2972 TCGA-AB-2973 
       15.06        37.05        10.03        26.04         0.99        20.02 
TCGA-AB-2974 TCGA-AB-2976 TCGA-AB-2977 TCGA-AB-2978 TCGA-AB-2980 TCGA-AB-2982 
        3.02        30.08         0.99        22.98        22.98         4.90 
TCGA-AB-2983 TCGA-AB-2984 TCGA-AB-2985 TCGA-AB-2986 TCGA-AB-2987 TCGA-AB-2988 
       11.01        38.01         8.98         6.97         6.05         0.99 
TCGA-AB-2989 TCGA-AB-2990 TCGA-AB-2991 TCGA-AB-2992 TCGA-AB-2993 TCGA-AB-2994 
       12.00        15.02        60.03        56.09        25.02        59.11 
TCGA-AB-2995 TCGA-AB-2996 TCGA-AB-2998 TCGA-AB-2999 TCGA-AB-3000 TCGA-AB-3001 
       50.99        51.98         1.02        57.01        41.06        51.98 
TCGA-AB-3002 TCGA-AB-3005 TCGA-AB-3006 TCGA-AB-3007 TCGA-AB-3008 TCGA-AB-3009 
       47.05        69.01        15.91        51.98        27.02        18.94 
TCGA-AB-3011 TCGA-AB-3012 
       61.97        62.04 

  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
             4.04              0.92 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
            24.00             94.06 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
           14.020            12.015 
[1] "4.0 - 24.0 (14.0)" "0.9 - 94.1 (12.0)"
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
[1] "Remove cluster labels:" "XQ GAIN MUTATED"       
clus
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                2               164 
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2884        TCGA-AB-2885        TCGA-AB-2886 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892        TCGA-AB-2893 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896        TCGA-AB-2897 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900        TCGA-AB-2901 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906        TCGA-AB-2908 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912        TCGA-AB-2913 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917        TCGA-AB-2919 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924        TCGA-AB-2925 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2933        TCGA-AB-2934 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2935        TCGA-AB-2936        TCGA-AB-2937        TCGA-AB-2938 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2939        TCGA-AB-2942        TCGA-AB-2945        TCGA-AB-2947 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2948        TCGA-AB-2949        TCGA-AB-2950        TCGA-AB-2952 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2954        TCGA-AB-2955        TCGA-AB-2956        TCGA-AB-2957 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2959        TCGA-AB-2963        TCGA-AB-2964        TCGA-AB-2965 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2966        TCGA-AB-2967        TCGA-AB-2968        TCGA-AB-2969 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2970        TCGA-AB-2971        TCGA-AB-2972        TCGA-AB-2973 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2974        TCGA-AB-2976        TCGA-AB-2977        TCGA-AB-2978 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2980        TCGA-AB-2982        TCGA-AB-2983        TCGA-AB-2984 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2985        TCGA-AB-2986        TCGA-AB-2987        TCGA-AB-2988 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2989        TCGA-AB-2990        TCGA-AB-2991        TCGA-AB-2992 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2993        TCGA-AB-2994        TCGA-AB-2995        TCGA-AB-2996 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-2998        TCGA-AB-2999        TCGA-AB-3000        TCGA-AB-3001 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-3002        TCGA-AB-3005        TCGA-AB-3006        TCGA-AB-3007 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-AB-3008        TCGA-AB-3009        TCGA-AB-3011        TCGA-AB-3012 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
D15V2, continuous
D15V3, binary
                   cls
clus                  0   1
  XQ GAIN MUTATED     1   2
  XQ GAIN WILD-TYPE  86 102
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      1    2
  XQ GAIN WILD-TYPE   86  102
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  FEMALE               1                86
  MALE                 2               102

Clustering(16) Variable = 3P LOSS MUTATION ANALYSIS
D16V1, survival
                   sevent
clus2                 0   1
  3P LOSS MUTATED     0   2
  3P LOSS WILD-TYPE  62 102
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
                2               164 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
                2               102 
$`3P LOSS MUTATED`
TCGA-AB-2813 TCGA-AB-2885 
        1.02         7.04 

$`3P LOSS WILD-TYPE`
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 
       26.04        84.03        18.94        31.04         5.92        94.06 
TCGA-AB-2809 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2814 TCGA-AB-2815 
        2.04         1.02         7.99        12.03        26.04        26.99 
TCGA-AB-2816 TCGA-AB-2817 TCGA-AB-2818 TCGA-AB-2819 TCGA-AB-2821 TCGA-AB-2822 
        8.05         8.98         9.96        82.06        26.99        31.96 
TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2828 TCGA-AB-2829 
        0.99         6.94        24.03         8.98        75.09         8.98 
TCGA-AB-2830 TCGA-AB-2831 TCGA-AB-2832 TCGA-AB-2834 TCGA-AB-2835 TCGA-AB-2836 
        9.04        21.04        12.00         8.05        55.00        17.00 
TCGA-AB-2838 TCGA-AB-2839 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2844 TCGA-AB-2845 
       12.00        15.98         0.92        46.06         3.98         9.96 
TCGA-AB-2846 TCGA-AB-2848 TCGA-AB-2849 TCGA-AB-2850 TCGA-AB-2851 TCGA-AB-2853 
       46.09        14.96        72.99         1.97         7.96         2.89 
TCGA-AB-2854 TCGA-AB-2855 TCGA-AB-2856 TCGA-AB-2857 TCGA-AB-2858 TCGA-AB-2859 
       12.03         6.94         4.90        10.06        18.94         9.96 
TCGA-AB-2860 TCGA-AB-2862 TCGA-AB-2863 TCGA-AB-2864 TCGA-AB-2865 TCGA-AB-2866 
       14.01        47.01         1.02        18.97         2.01         5.00 
TCGA-AB-2867 TCGA-AB-2868 TCGA-AB-2869 TCGA-AB-2870 TCGA-AB-2871 TCGA-AB-2872 
        6.05         4.96         7.99         5.00         5.03        20.98 
TCGA-AB-2873 TCGA-AB-2874 TCGA-AB-2875 TCGA-AB-2877 TCGA-AB-2878 TCGA-AB-2879 
        8.98        13.02         6.97        20.98        12.00         8.05 
TCGA-AB-2881 TCGA-AB-2882 TCGA-AB-2883 TCGA-AB-2884 TCGA-AB-2886 TCGA-AB-2888 
       12.92        12.00        24.00        24.03         5.95        10.98 
TCGA-AB-2889 TCGA-AB-2892 TCGA-AB-2893 TCGA-AB-2894 TCGA-AB-2895 TCGA-AB-2896 
        9.99        30.97         6.97         5.92         5.03         7.00 
TCGA-AB-2897 TCGA-AB-2898 TCGA-AB-2899 TCGA-AB-2900 TCGA-AB-2901 TCGA-AB-2904 
        7.99        12.92        22.06         6.02         1.91        16.96 
TCGA-AB-2905 TCGA-AB-2906 TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2911 TCGA-AB-2912 
       52.93        18.97         1.02         0.99        38.99         9.01 
TCGA-AB-2913 TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2917 TCGA-AB-2919 TCGA-AB-2920 
       39.98        26.04        29.00        39.98         2.01        12.03 
TCGA-AB-2923 TCGA-AB-2924 TCGA-AB-2925 TCGA-AB-2926 TCGA-AB-2927 TCGA-AB-2929 
        1.02         2.96         7.96        14.99         2.93         4.04 
TCGA-AB-2933 TCGA-AB-2934 TCGA-AB-2935 TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2938 
        4.01         0.92         1.97         1.94         7.07         9.96 
TCGA-AB-2939 TCGA-AB-2942 TCGA-AB-2945 TCGA-AB-2947 TCGA-AB-2948 TCGA-AB-2949 
       14.96        21.07         7.99         1.02        19.07        22.98 
TCGA-AB-2950 TCGA-AB-2952 TCGA-AB-2954 TCGA-AB-2955 TCGA-AB-2956 TCGA-AB-2957 
       10.06         1.02        49.05        16.08         6.02        19.99 
TCGA-AB-2959 TCGA-AB-2963 TCGA-AB-2964 TCGA-AB-2965 TCGA-AB-2966 TCGA-AB-2967 
       16.08        53.95        41.98        11.01        28.08        34.03 
TCGA-AB-2968 TCGA-AB-2969 TCGA-AB-2970 TCGA-AB-2971 TCGA-AB-2972 TCGA-AB-2973 
       15.06        37.05        10.03        26.04         0.99        20.02 
TCGA-AB-2974 TCGA-AB-2976 TCGA-AB-2977 TCGA-AB-2978 TCGA-AB-2980 TCGA-AB-2982 
        3.02        30.08         0.99        22.98        22.98         4.90 
TCGA-AB-2983 TCGA-AB-2984 TCGA-AB-2985 TCGA-AB-2986 TCGA-AB-2987 TCGA-AB-2988 
       11.01        38.01         8.98         6.97         6.05         0.99 
TCGA-AB-2989 TCGA-AB-2990 TCGA-AB-2991 TCGA-AB-2992 TCGA-AB-2993 TCGA-AB-2994 
       12.00        15.02        60.03        56.09        25.02        59.11 
TCGA-AB-2995 TCGA-AB-2996 TCGA-AB-2998 TCGA-AB-2999 TCGA-AB-3000 TCGA-AB-3001 
       50.99        51.98         1.02        57.01        41.06        51.98 
TCGA-AB-3002 TCGA-AB-3005 TCGA-AB-3006 TCGA-AB-3007 TCGA-AB-3008 TCGA-AB-3009 
       47.05        69.01        15.91        51.98        27.02        18.94 
TCGA-AB-3011 TCGA-AB-3012 
       61.97        62.04 

  3P LOSS MUTATED 3P LOSS WILD-TYPE 
             1.02              0.92 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
             7.04             94.06 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
             4.03             12.03 
[1] "1.0 - 7.0 (4.0)"   "0.9 - 94.1 (12.0)"
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
[1] "Remove cluster labels:" "3P LOSS MUTATED"       
clus
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
                2               164 
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2814        TCGA-AB-2815 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818        TCGA-AB-2819 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824        TCGA-AB-2825 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828        TCGA-AB-2829 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832        TCGA-AB-2834 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838        TCGA-AB-2839 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844        TCGA-AB-2845 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849        TCGA-AB-2850 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854        TCGA-AB-2855 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858        TCGA-AB-2859 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863        TCGA-AB-2864 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867        TCGA-AB-2868 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871        TCGA-AB-2872 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875        TCGA-AB-2877 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881        TCGA-AB-2882 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2886        TCGA-AB-2888 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2889        TCGA-AB-2892        TCGA-AB-2893        TCGA-AB-2894 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2895        TCGA-AB-2896        TCGA-AB-2897        TCGA-AB-2898 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2899        TCGA-AB-2900        TCGA-AB-2901        TCGA-AB-2904 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2905        TCGA-AB-2906        TCGA-AB-2908        TCGA-AB-2909 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2911        TCGA-AB-2912        TCGA-AB-2913        TCGA-AB-2914 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2916        TCGA-AB-2917        TCGA-AB-2919        TCGA-AB-2920 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2923        TCGA-AB-2924        TCGA-AB-2925        TCGA-AB-2926 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2927        TCGA-AB-2929        TCGA-AB-2933        TCGA-AB-2934 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2935        TCGA-AB-2936        TCGA-AB-2937        TCGA-AB-2938 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2939        TCGA-AB-2942        TCGA-AB-2945        TCGA-AB-2947 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2948        TCGA-AB-2949        TCGA-AB-2950        TCGA-AB-2952 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2954        TCGA-AB-2955        TCGA-AB-2956        TCGA-AB-2957 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2959        TCGA-AB-2963        TCGA-AB-2964        TCGA-AB-2965 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2966        TCGA-AB-2967        TCGA-AB-2968        TCGA-AB-2969 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2970        TCGA-AB-2971        TCGA-AB-2972        TCGA-AB-2973 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2974        TCGA-AB-2976        TCGA-AB-2977        TCGA-AB-2978 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2980        TCGA-AB-2982        TCGA-AB-2983        TCGA-AB-2984 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2985        TCGA-AB-2986        TCGA-AB-2987        TCGA-AB-2988 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2989        TCGA-AB-2990        TCGA-AB-2991        TCGA-AB-2992 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2993        TCGA-AB-2994        TCGA-AB-2995        TCGA-AB-2996 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-2998        TCGA-AB-2999        TCGA-AB-3000        TCGA-AB-3001 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-3002        TCGA-AB-3005        TCGA-AB-3006        TCGA-AB-3007 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-AB-3008        TCGA-AB-3009        TCGA-AB-3011        TCGA-AB-3012 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
D16V2, continuous
D16V3, binary
                   cls
clus                  0   1
  3P LOSS MUTATED     0   3
  3P LOSS WILD-TYPE  87 101
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED      0    3
  3P LOSS WILD-TYPE   87  101
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  FEMALE               0                87
  MALE                 3               101

Clustering(17) Variable = 3Q LOSS MUTATION ANALYSIS
D17V1, survival
                   sevent
clus2                 0   1
  3Q LOSS MUTATED     0   2
  3Q LOSS WILD-TYPE  62 102
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                2               164 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                2               102 
$`3Q LOSS MUTATED`
TCGA-AB-2813 TCGA-AB-2885 
        1.02         7.04 

$`3Q LOSS WILD-TYPE`
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 
       26.04        84.03        18.94        31.04         5.92        94.06 
TCGA-AB-2809 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2814 TCGA-AB-2815 
        2.04         1.02         7.99        12.03        26.04        26.99 
TCGA-AB-2816 TCGA-AB-2817 TCGA-AB-2818 TCGA-AB-2819 TCGA-AB-2821 TCGA-AB-2822 
        8.05         8.98         9.96        82.06        26.99        31.96 
TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2828 TCGA-AB-2829 
        0.99         6.94        24.03         8.98        75.09         8.98 
TCGA-AB-2830 TCGA-AB-2831 TCGA-AB-2832 TCGA-AB-2834 TCGA-AB-2835 TCGA-AB-2836 
        9.04        21.04        12.00         8.05        55.00        17.00 
TCGA-AB-2838 TCGA-AB-2839 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2844 TCGA-AB-2845 
       12.00        15.98         0.92        46.06         3.98         9.96 
TCGA-AB-2846 TCGA-AB-2848 TCGA-AB-2849 TCGA-AB-2850 TCGA-AB-2851 TCGA-AB-2853 
       46.09        14.96        72.99         1.97         7.96         2.89 
TCGA-AB-2854 TCGA-AB-2855 TCGA-AB-2856 TCGA-AB-2857 TCGA-AB-2858 TCGA-AB-2859 
       12.03         6.94         4.90        10.06        18.94         9.96 
TCGA-AB-2860 TCGA-AB-2862 TCGA-AB-2863 TCGA-AB-2864 TCGA-AB-2865 TCGA-AB-2866 
       14.01        47.01         1.02        18.97         2.01         5.00 
TCGA-AB-2867 TCGA-AB-2868 TCGA-AB-2869 TCGA-AB-2870 TCGA-AB-2871 TCGA-AB-2872 
        6.05         4.96         7.99         5.00         5.03        20.98 
TCGA-AB-2873 TCGA-AB-2874 TCGA-AB-2875 TCGA-AB-2877 TCGA-AB-2878 TCGA-AB-2879 
        8.98        13.02         6.97        20.98        12.00         8.05 
TCGA-AB-2881 TCGA-AB-2882 TCGA-AB-2883 TCGA-AB-2884 TCGA-AB-2886 TCGA-AB-2888 
       12.92        12.00        24.00        24.03         5.95        10.98 
TCGA-AB-2889 TCGA-AB-2892 TCGA-AB-2893 TCGA-AB-2894 TCGA-AB-2895 TCGA-AB-2896 
        9.99        30.97         6.97         5.92         5.03         7.00 
TCGA-AB-2897 TCGA-AB-2898 TCGA-AB-2899 TCGA-AB-2900 TCGA-AB-2901 TCGA-AB-2904 
        7.99        12.92        22.06         6.02         1.91        16.96 
TCGA-AB-2905 TCGA-AB-2906 TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2911 TCGA-AB-2912 
       52.93        18.97         1.02         0.99        38.99         9.01 
TCGA-AB-2913 TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2917 TCGA-AB-2919 TCGA-AB-2920 
       39.98        26.04        29.00        39.98         2.01        12.03 
TCGA-AB-2923 TCGA-AB-2924 TCGA-AB-2925 TCGA-AB-2926 TCGA-AB-2927 TCGA-AB-2929 
        1.02         2.96         7.96        14.99         2.93         4.04 
TCGA-AB-2933 TCGA-AB-2934 TCGA-AB-2935 TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2938 
        4.01         0.92         1.97         1.94         7.07         9.96 
TCGA-AB-2939 TCGA-AB-2942 TCGA-AB-2945 TCGA-AB-2947 TCGA-AB-2948 TCGA-AB-2949 
       14.96        21.07         7.99         1.02        19.07        22.98 
TCGA-AB-2950 TCGA-AB-2952 TCGA-AB-2954 TCGA-AB-2955 TCGA-AB-2956 TCGA-AB-2957 
       10.06         1.02        49.05        16.08         6.02        19.99 
TCGA-AB-2959 TCGA-AB-2963 TCGA-AB-2964 TCGA-AB-2965 TCGA-AB-2966 TCGA-AB-2967 
       16.08        53.95        41.98        11.01        28.08        34.03 
TCGA-AB-2968 TCGA-AB-2969 TCGA-AB-2970 TCGA-AB-2971 TCGA-AB-2972 TCGA-AB-2973 
       15.06        37.05        10.03        26.04         0.99        20.02 
TCGA-AB-2974 TCGA-AB-2976 TCGA-AB-2977 TCGA-AB-2978 TCGA-AB-2980 TCGA-AB-2982 
        3.02        30.08         0.99        22.98        22.98         4.90 
TCGA-AB-2983 TCGA-AB-2984 TCGA-AB-2985 TCGA-AB-2986 TCGA-AB-2987 TCGA-AB-2988 
       11.01        38.01         8.98         6.97         6.05         0.99 
TCGA-AB-2989 TCGA-AB-2990 TCGA-AB-2991 TCGA-AB-2992 TCGA-AB-2993 TCGA-AB-2994 
       12.00        15.02        60.03        56.09        25.02        59.11 
TCGA-AB-2995 TCGA-AB-2996 TCGA-AB-2998 TCGA-AB-2999 TCGA-AB-3000 TCGA-AB-3001 
       50.99        51.98         1.02        57.01        41.06        51.98 
TCGA-AB-3002 TCGA-AB-3005 TCGA-AB-3006 TCGA-AB-3007 TCGA-AB-3008 TCGA-AB-3009 
       47.05        69.01        15.91        51.98        27.02        18.94 
TCGA-AB-3011 TCGA-AB-3012 
       61.97        62.04 

  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
             1.02              0.92 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
             7.04             94.06 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
             4.03             12.03 
[1] "1.0 - 7.0 (4.0)"   "0.9 - 94.1 (12.0)"
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
[1] "Remove cluster labels:" "3Q LOSS MUTATED"       
clus
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                2               164 
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2814        TCGA-AB-2815 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818        TCGA-AB-2819 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824        TCGA-AB-2825 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828        TCGA-AB-2829 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832        TCGA-AB-2834 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838        TCGA-AB-2839 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844        TCGA-AB-2845 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849        TCGA-AB-2850 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854        TCGA-AB-2855 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858        TCGA-AB-2859 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863        TCGA-AB-2864 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867        TCGA-AB-2868 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871        TCGA-AB-2872 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875        TCGA-AB-2877 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881        TCGA-AB-2882 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2886        TCGA-AB-2888 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2889        TCGA-AB-2892        TCGA-AB-2893        TCGA-AB-2894 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2895        TCGA-AB-2896        TCGA-AB-2897        TCGA-AB-2898 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2899        TCGA-AB-2900        TCGA-AB-2901        TCGA-AB-2904 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2905        TCGA-AB-2906        TCGA-AB-2908        TCGA-AB-2909 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2911        TCGA-AB-2912        TCGA-AB-2913        TCGA-AB-2914 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2916        TCGA-AB-2917        TCGA-AB-2919        TCGA-AB-2920 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2923        TCGA-AB-2924        TCGA-AB-2925        TCGA-AB-2926 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2927        TCGA-AB-2929        TCGA-AB-2933        TCGA-AB-2934 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2935        TCGA-AB-2936        TCGA-AB-2937        TCGA-AB-2938 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2939        TCGA-AB-2942        TCGA-AB-2945        TCGA-AB-2947 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2948        TCGA-AB-2949        TCGA-AB-2950        TCGA-AB-2952 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2954        TCGA-AB-2955        TCGA-AB-2956        TCGA-AB-2957 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2959        TCGA-AB-2963        TCGA-AB-2964        TCGA-AB-2965 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2966        TCGA-AB-2967        TCGA-AB-2968        TCGA-AB-2969 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2970        TCGA-AB-2971        TCGA-AB-2972        TCGA-AB-2973 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2974        TCGA-AB-2976        TCGA-AB-2977        TCGA-AB-2978 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2980        TCGA-AB-2982        TCGA-AB-2983        TCGA-AB-2984 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2985        TCGA-AB-2986        TCGA-AB-2987        TCGA-AB-2988 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2989        TCGA-AB-2990        TCGA-AB-2991        TCGA-AB-2992 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2993        TCGA-AB-2994        TCGA-AB-2995        TCGA-AB-2996 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-2998        TCGA-AB-2999        TCGA-AB-3000        TCGA-AB-3001 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-3002        TCGA-AB-3005        TCGA-AB-3006        TCGA-AB-3007 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-AB-3008        TCGA-AB-3009        TCGA-AB-3011        TCGA-AB-3012 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
D17V2, continuous
D17V3, binary
                   cls
clus                  0   1
  3Q LOSS MUTATED     0   3
  3Q LOSS WILD-TYPE  87 101
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      0    3
  3Q LOSS WILD-TYPE   87  101
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  FEMALE               0                87
  MALE                 3               101

Clustering(18) Variable = 5Q LOSS MUTATION ANALYSIS
D18V1, survival
                   sevent
clus2                0  1
  5Q LOSS MUTATED    0  6
  5Q LOSS WILD-TYPE 62 98
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                6               160 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                6                98 
$`5Q LOSS MUTATED`
TCGA-AB-2813 TCGA-AB-2829 TCGA-AB-2838 TCGA-AB-2857 TCGA-AB-2868 TCGA-AB-2908 
        1.02         8.98        12.00        10.06         4.96         1.02 

$`5Q LOSS WILD-TYPE`
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 
       26.04        84.03        18.94        31.04         5.92        94.06 
TCGA-AB-2809 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2814 TCGA-AB-2815 
        2.04         1.02         7.99        12.03        26.04        26.99 
TCGA-AB-2816 TCGA-AB-2817 TCGA-AB-2818 TCGA-AB-2819 TCGA-AB-2821 TCGA-AB-2822 
        8.05         8.98         9.96        82.06        26.99        31.96 
TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2828 TCGA-AB-2830 
        0.99         6.94        24.03         8.98        75.09         9.04 
TCGA-AB-2831 TCGA-AB-2832 TCGA-AB-2834 TCGA-AB-2835 TCGA-AB-2836 TCGA-AB-2839 
       21.04        12.00         8.05        55.00        17.00        15.98 
TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2844 TCGA-AB-2845 TCGA-AB-2846 TCGA-AB-2848 
        0.92        46.06         3.98         9.96        46.09        14.96 
TCGA-AB-2849 TCGA-AB-2850 TCGA-AB-2851 TCGA-AB-2853 TCGA-AB-2854 TCGA-AB-2855 
       72.99         1.97         7.96         2.89        12.03         6.94 
TCGA-AB-2856 TCGA-AB-2858 TCGA-AB-2859 TCGA-AB-2860 TCGA-AB-2862 TCGA-AB-2863 
        4.90        18.94         9.96        14.01        47.01         1.02 
TCGA-AB-2864 TCGA-AB-2865 TCGA-AB-2866 TCGA-AB-2867 TCGA-AB-2869 TCGA-AB-2870 
       18.97         2.01         5.00         6.05         7.99         5.00 
TCGA-AB-2871 TCGA-AB-2872 TCGA-AB-2873 TCGA-AB-2874 TCGA-AB-2875 TCGA-AB-2877 
        5.03        20.98         8.98        13.02         6.97        20.98 
TCGA-AB-2878 TCGA-AB-2879 TCGA-AB-2881 TCGA-AB-2882 TCGA-AB-2883 TCGA-AB-2884 
       12.00         8.05        12.92        12.00        24.00        24.03 
TCGA-AB-2885 TCGA-AB-2886 TCGA-AB-2888 TCGA-AB-2889 TCGA-AB-2892 TCGA-AB-2893 
        7.04         5.95        10.98         9.99        30.97         6.97 
TCGA-AB-2894 TCGA-AB-2895 TCGA-AB-2896 TCGA-AB-2897 TCGA-AB-2898 TCGA-AB-2899 
        5.92         5.03         7.00         7.99        12.92        22.06 
TCGA-AB-2900 TCGA-AB-2901 TCGA-AB-2904 TCGA-AB-2905 TCGA-AB-2906 TCGA-AB-2909 
        6.02         1.91        16.96        52.93        18.97         0.99 
TCGA-AB-2911 TCGA-AB-2912 TCGA-AB-2913 TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2917 
       38.99         9.01        39.98        26.04        29.00        39.98 
TCGA-AB-2919 TCGA-AB-2920 TCGA-AB-2923 TCGA-AB-2924 TCGA-AB-2925 TCGA-AB-2926 
        2.01        12.03         1.02         2.96         7.96        14.99 
TCGA-AB-2927 TCGA-AB-2929 TCGA-AB-2933 TCGA-AB-2934 TCGA-AB-2935 TCGA-AB-2936 
        2.93         4.04         4.01         0.92         1.97         1.94 
TCGA-AB-2937 TCGA-AB-2938 TCGA-AB-2939 TCGA-AB-2942 TCGA-AB-2945 TCGA-AB-2947 
        7.07         9.96        14.96        21.07         7.99         1.02 
TCGA-AB-2948 TCGA-AB-2949 TCGA-AB-2950 TCGA-AB-2952 TCGA-AB-2954 TCGA-AB-2955 
       19.07        22.98        10.06         1.02        49.05        16.08 
TCGA-AB-2956 TCGA-AB-2957 TCGA-AB-2959 TCGA-AB-2963 TCGA-AB-2964 TCGA-AB-2965 
        6.02        19.99        16.08        53.95        41.98        11.01 
TCGA-AB-2966 TCGA-AB-2967 TCGA-AB-2968 TCGA-AB-2969 TCGA-AB-2970 TCGA-AB-2971 
       28.08        34.03        15.06        37.05        10.03        26.04 
TCGA-AB-2972 TCGA-AB-2973 TCGA-AB-2974 TCGA-AB-2976 TCGA-AB-2977 TCGA-AB-2978 
        0.99        20.02         3.02        30.08         0.99        22.98 
TCGA-AB-2980 TCGA-AB-2982 TCGA-AB-2983 TCGA-AB-2984 TCGA-AB-2985 TCGA-AB-2986 
       22.98         4.90        11.01        38.01         8.98         6.97 
TCGA-AB-2987 TCGA-AB-2988 TCGA-AB-2989 TCGA-AB-2990 TCGA-AB-2991 TCGA-AB-2992 
        6.05         0.99        12.00        15.02        60.03        56.09 
TCGA-AB-2993 TCGA-AB-2994 TCGA-AB-2995 TCGA-AB-2996 TCGA-AB-2998 TCGA-AB-2999 
       25.02        59.11        50.99        51.98         1.02        57.01 
TCGA-AB-3000 TCGA-AB-3001 TCGA-AB-3002 TCGA-AB-3005 TCGA-AB-3006 TCGA-AB-3007 
       41.06        51.98        47.05        69.01        15.91        51.98 
TCGA-AB-3008 TCGA-AB-3009 TCGA-AB-3011 TCGA-AB-3012 
       27.02        18.94        61.97        62.04 

  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
             1.02              0.92 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
            12.00             94.06 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
            6.970            12.475 
[1] "1.0 - 12.0 (7.0)"  "0.9 - 94.1 (12.5)"
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
[1] "hr=" "4"  
D18V2, continuous
D18V3, binary
                   cls
clus                 0  1
  5Q LOSS MUTATED    0  6
  5Q LOSS WILD-TYPE 87 98
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED      0    6
  5Q LOSS WILD-TYPE   87   98
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  FEMALE               0                87
  MALE                 6                98

Clustering(19) Variable = 7P LOSS MUTATION ANALYSIS
D19V1, survival
                   sevent
clus2                0  1
  7P LOSS MUTATED    3 10
  7P LOSS WILD-TYPE 59 94
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               13               153 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               10                94 
$`7P LOSS MUTATED`
TCGA-AB-2817 TCGA-AB-2838 TCGA-AB-2857 TCGA-AB-2874 TCGA-AB-2882 TCGA-AB-2885 
        8.98        12.00        10.06        13.02        12.00         7.04 
TCGA-AB-2894 TCGA-AB-2917 TCGA-AB-2920 TCGA-AB-2929 TCGA-AB-2935 TCGA-AB-2949 
        5.92        39.98        12.03         4.04         1.97        22.98 
TCGA-AB-2952 
        1.02 

$`7P LOSS WILD-TYPE`
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 
       26.04        84.03        18.94        31.04         5.92        94.06 
TCGA-AB-2809 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2813 TCGA-AB-2814 
        2.04         1.02         7.99        12.03         1.02        26.04 
TCGA-AB-2815 TCGA-AB-2816 TCGA-AB-2818 TCGA-AB-2819 TCGA-AB-2821 TCGA-AB-2822 
       26.99         8.05         9.96        82.06        26.99        31.96 
TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2828 TCGA-AB-2829 
        0.99         6.94        24.03         8.98        75.09         8.98 
TCGA-AB-2830 TCGA-AB-2831 TCGA-AB-2832 TCGA-AB-2834 TCGA-AB-2835 TCGA-AB-2836 
        9.04        21.04        12.00         8.05        55.00        17.00 
TCGA-AB-2839 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2844 TCGA-AB-2845 TCGA-AB-2846 
       15.98         0.92        46.06         3.98         9.96        46.09 
TCGA-AB-2848 TCGA-AB-2849 TCGA-AB-2850 TCGA-AB-2851 TCGA-AB-2853 TCGA-AB-2854 
       14.96        72.99         1.97         7.96         2.89        12.03 
TCGA-AB-2855 TCGA-AB-2856 TCGA-AB-2858 TCGA-AB-2859 TCGA-AB-2860 TCGA-AB-2862 
        6.94         4.90        18.94         9.96        14.01        47.01 
TCGA-AB-2863 TCGA-AB-2864 TCGA-AB-2865 TCGA-AB-2866 TCGA-AB-2867 TCGA-AB-2868 
        1.02        18.97         2.01         5.00         6.05         4.96 
TCGA-AB-2869 TCGA-AB-2870 TCGA-AB-2871 TCGA-AB-2872 TCGA-AB-2873 TCGA-AB-2875 
        7.99         5.00         5.03        20.98         8.98         6.97 
TCGA-AB-2877 TCGA-AB-2878 TCGA-AB-2879 TCGA-AB-2881 TCGA-AB-2883 TCGA-AB-2884 
       20.98        12.00         8.05        12.92        24.00        24.03 
TCGA-AB-2886 TCGA-AB-2888 TCGA-AB-2889 TCGA-AB-2892 TCGA-AB-2893 TCGA-AB-2895 
        5.95        10.98         9.99        30.97         6.97         5.03 
TCGA-AB-2896 TCGA-AB-2897 TCGA-AB-2898 TCGA-AB-2899 TCGA-AB-2900 TCGA-AB-2901 
        7.00         7.99        12.92        22.06         6.02         1.91 
TCGA-AB-2904 TCGA-AB-2905 TCGA-AB-2906 TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2911 
       16.96        52.93        18.97         1.02         0.99        38.99 
TCGA-AB-2912 TCGA-AB-2913 TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2919 TCGA-AB-2923 
        9.01        39.98        26.04        29.00         2.01         1.02 
TCGA-AB-2924 TCGA-AB-2925 TCGA-AB-2926 TCGA-AB-2927 TCGA-AB-2933 TCGA-AB-2934 
        2.96         7.96        14.99         2.93         4.01         0.92 
TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2938 TCGA-AB-2939 TCGA-AB-2942 TCGA-AB-2945 
        1.94         7.07         9.96        14.96        21.07         7.99 
TCGA-AB-2947 TCGA-AB-2948 TCGA-AB-2950 TCGA-AB-2954 TCGA-AB-2955 TCGA-AB-2956 
        1.02        19.07        10.06        49.05        16.08         6.02 
TCGA-AB-2957 TCGA-AB-2959 TCGA-AB-2963 TCGA-AB-2964 TCGA-AB-2965 TCGA-AB-2966 
       19.99        16.08        53.95        41.98        11.01        28.08 
TCGA-AB-2967 TCGA-AB-2968 TCGA-AB-2969 TCGA-AB-2970 TCGA-AB-2971 TCGA-AB-2972 
       34.03        15.06        37.05        10.03        26.04         0.99 
TCGA-AB-2973 TCGA-AB-2974 TCGA-AB-2976 TCGA-AB-2977 TCGA-AB-2978 TCGA-AB-2980 
       20.02         3.02        30.08         0.99        22.98        22.98 
TCGA-AB-2982 TCGA-AB-2983 TCGA-AB-2984 TCGA-AB-2985 TCGA-AB-2986 TCGA-AB-2987 
        4.90        11.01        38.01         8.98         6.97         6.05 
TCGA-AB-2988 TCGA-AB-2989 TCGA-AB-2990 TCGA-AB-2991 TCGA-AB-2992 TCGA-AB-2993 
        0.99        12.00        15.02        60.03        56.09        25.02 
TCGA-AB-2994 TCGA-AB-2995 TCGA-AB-2996 TCGA-AB-2998 TCGA-AB-2999 TCGA-AB-3000 
       59.11        50.99        51.98         1.02        57.01        41.06 
TCGA-AB-3001 TCGA-AB-3002 TCGA-AB-3005 TCGA-AB-3006 TCGA-AB-3007 TCGA-AB-3008 
       51.98        47.05        69.01        15.91        51.98        27.02 
TCGA-AB-3009 TCGA-AB-3011 TCGA-AB-3012 
       18.94        61.97        62.04 

  7P LOSS MUTATED 7P LOSS WILD-TYPE 
             1.02              0.92 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            39.98             94.06 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            10.06             12.92 
[1] "1.0 - 40.0 (10.1)" "0.9 - 94.1 (12.9)"
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
[1] "hr=" "1.8"
D19V2, continuous
D19V3, binary
                   cls
clus                 0  1
  7P LOSS MUTATED    7 10
  7P LOSS WILD-TYPE 80 94
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      7   10
  7P LOSS WILD-TYPE   80   94
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  FEMALE               7                80
  MALE                10                94

Clustering(20) Variable = 7Q LOSS MUTATION ANALYSIS
D20V1, survival
                   sevent
clus2                0  1
  7Q LOSS MUTATED    3 12
  7Q LOSS WILD-TYPE 59 92
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               15               151 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               12                92 
$`7Q LOSS MUTATED`
TCGA-AB-2817 TCGA-AB-2829 TCGA-AB-2838 TCGA-AB-2857 TCGA-AB-2874 TCGA-AB-2878 
        8.98         8.98        12.00        10.06        13.02        12.00 
TCGA-AB-2882 TCGA-AB-2885 TCGA-AB-2894 TCGA-AB-2917 TCGA-AB-2920 TCGA-AB-2929 
       12.00         7.04         5.92        39.98        12.03         4.04 
TCGA-AB-2935 TCGA-AB-2949 TCGA-AB-2952 
        1.97        22.98         1.02 

$`7Q LOSS WILD-TYPE`
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 
       26.04        84.03        18.94        31.04         5.92        94.06 
TCGA-AB-2809 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2813 TCGA-AB-2814 
        2.04         1.02         7.99        12.03         1.02        26.04 
TCGA-AB-2815 TCGA-AB-2816 TCGA-AB-2818 TCGA-AB-2819 TCGA-AB-2821 TCGA-AB-2822 
       26.99         8.05         9.96        82.06        26.99        31.96 
TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2828 TCGA-AB-2830 
        0.99         6.94        24.03         8.98        75.09         9.04 
TCGA-AB-2831 TCGA-AB-2832 TCGA-AB-2834 TCGA-AB-2835 TCGA-AB-2836 TCGA-AB-2839 
       21.04        12.00         8.05        55.00        17.00        15.98 
TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2844 TCGA-AB-2845 TCGA-AB-2846 TCGA-AB-2848 
        0.92        46.06         3.98         9.96        46.09        14.96 
TCGA-AB-2849 TCGA-AB-2850 TCGA-AB-2851 TCGA-AB-2853 TCGA-AB-2854 TCGA-AB-2855 
       72.99         1.97         7.96         2.89        12.03         6.94 
TCGA-AB-2856 TCGA-AB-2858 TCGA-AB-2859 TCGA-AB-2860 TCGA-AB-2862 TCGA-AB-2863 
        4.90        18.94         9.96        14.01        47.01         1.02 
TCGA-AB-2864 TCGA-AB-2865 TCGA-AB-2866 TCGA-AB-2867 TCGA-AB-2868 TCGA-AB-2869 
       18.97         2.01         5.00         6.05         4.96         7.99 
TCGA-AB-2870 TCGA-AB-2871 TCGA-AB-2872 TCGA-AB-2873 TCGA-AB-2875 TCGA-AB-2877 
        5.00         5.03        20.98         8.98         6.97        20.98 
TCGA-AB-2879 TCGA-AB-2881 TCGA-AB-2883 TCGA-AB-2884 TCGA-AB-2886 TCGA-AB-2888 
        8.05        12.92        24.00        24.03         5.95        10.98 
TCGA-AB-2889 TCGA-AB-2892 TCGA-AB-2893 TCGA-AB-2895 TCGA-AB-2896 TCGA-AB-2897 
        9.99        30.97         6.97         5.03         7.00         7.99 
TCGA-AB-2898 TCGA-AB-2899 TCGA-AB-2900 TCGA-AB-2901 TCGA-AB-2904 TCGA-AB-2905 
       12.92        22.06         6.02         1.91        16.96        52.93 
TCGA-AB-2906 TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2911 TCGA-AB-2912 TCGA-AB-2913 
       18.97         1.02         0.99        38.99         9.01        39.98 
TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2919 TCGA-AB-2923 TCGA-AB-2924 TCGA-AB-2925 
       26.04        29.00         2.01         1.02         2.96         7.96 
TCGA-AB-2926 TCGA-AB-2927 TCGA-AB-2933 TCGA-AB-2934 TCGA-AB-2936 TCGA-AB-2937 
       14.99         2.93         4.01         0.92         1.94         7.07 
TCGA-AB-2938 TCGA-AB-2939 TCGA-AB-2942 TCGA-AB-2945 TCGA-AB-2947 TCGA-AB-2948 
        9.96        14.96        21.07         7.99         1.02        19.07 
TCGA-AB-2950 TCGA-AB-2954 TCGA-AB-2955 TCGA-AB-2956 TCGA-AB-2957 TCGA-AB-2959 
       10.06        49.05        16.08         6.02        19.99        16.08 
TCGA-AB-2963 TCGA-AB-2964 TCGA-AB-2965 TCGA-AB-2966 TCGA-AB-2967 TCGA-AB-2968 
       53.95        41.98        11.01        28.08        34.03        15.06 
TCGA-AB-2969 TCGA-AB-2970 TCGA-AB-2971 TCGA-AB-2972 TCGA-AB-2973 TCGA-AB-2974 
       37.05        10.03        26.04         0.99        20.02         3.02 
TCGA-AB-2976 TCGA-AB-2977 TCGA-AB-2978 TCGA-AB-2980 TCGA-AB-2982 TCGA-AB-2983 
       30.08         0.99        22.98        22.98         4.90        11.01 
TCGA-AB-2984 TCGA-AB-2985 TCGA-AB-2986 TCGA-AB-2987 TCGA-AB-2988 TCGA-AB-2989 
       38.01         8.98         6.97         6.05         0.99        12.00 
TCGA-AB-2990 TCGA-AB-2991 TCGA-AB-2992 TCGA-AB-2993 TCGA-AB-2994 TCGA-AB-2995 
       15.02        60.03        56.09        25.02        59.11        50.99 
TCGA-AB-2996 TCGA-AB-2998 TCGA-AB-2999 TCGA-AB-3000 TCGA-AB-3001 TCGA-AB-3002 
       51.98         1.02        57.01        41.06        51.98        47.05 
TCGA-AB-3005 TCGA-AB-3006 TCGA-AB-3007 TCGA-AB-3008 TCGA-AB-3009 TCGA-AB-3011 
       69.01        15.91        51.98        27.02        18.94        61.97 
TCGA-AB-3012 
       62.04 

  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
             1.02              0.92 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
            39.98             94.06 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
            10.06             12.92 
[1] "1.0 - 40.0 (10.1)" "0.9 - 94.1 (12.9)"
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
[1] "hr=" "1.9"
D20V2, continuous
D20V3, binary
                   cls
clus                 0  1
  7Q LOSS MUTATED    9 11
  7Q LOSS WILD-TYPE 78 93
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      9   11
  7Q LOSS WILD-TYPE   78   93
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  FEMALE               9                78
  MALE                11                93

Clustering(21) Variable = 12P LOSS MUTATION ANALYSIS
D21V1, survival
                    sevent
clus2                  0   1
  12P LOSS MUTATED     0   2
  12P LOSS WILD-TYPE  62 102
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 2                164 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 2                102 
$`12P LOSS MUTATED`
TCGA-AB-2855 TCGA-AB-2929 
        6.94         4.04 

$`12P LOSS WILD-TYPE`
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 
       26.04        84.03        18.94        31.04         5.92        94.06 
TCGA-AB-2809 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2813 TCGA-AB-2814 
        2.04         1.02         7.99        12.03         1.02        26.04 
TCGA-AB-2815 TCGA-AB-2816 TCGA-AB-2817 TCGA-AB-2818 TCGA-AB-2819 TCGA-AB-2821 
       26.99         8.05         8.98         9.96        82.06        26.99 
TCGA-AB-2822 TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2828 
       31.96         0.99         6.94        24.03         8.98        75.09 
TCGA-AB-2829 TCGA-AB-2830 TCGA-AB-2831 TCGA-AB-2832 TCGA-AB-2834 TCGA-AB-2835 
        8.98         9.04        21.04        12.00         8.05        55.00 
TCGA-AB-2836 TCGA-AB-2838 TCGA-AB-2839 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2844 
       17.00        12.00        15.98         0.92        46.06         3.98 
TCGA-AB-2845 TCGA-AB-2846 TCGA-AB-2848 TCGA-AB-2849 TCGA-AB-2850 TCGA-AB-2851 
        9.96        46.09        14.96        72.99         1.97         7.96 
TCGA-AB-2853 TCGA-AB-2854 TCGA-AB-2856 TCGA-AB-2857 TCGA-AB-2858 TCGA-AB-2859 
        2.89        12.03         4.90        10.06        18.94         9.96 
TCGA-AB-2860 TCGA-AB-2862 TCGA-AB-2863 TCGA-AB-2864 TCGA-AB-2865 TCGA-AB-2866 
       14.01        47.01         1.02        18.97         2.01         5.00 
TCGA-AB-2867 TCGA-AB-2868 TCGA-AB-2869 TCGA-AB-2870 TCGA-AB-2871 TCGA-AB-2872 
        6.05         4.96         7.99         5.00         5.03        20.98 
TCGA-AB-2873 TCGA-AB-2874 TCGA-AB-2875 TCGA-AB-2877 TCGA-AB-2878 TCGA-AB-2879 
        8.98        13.02         6.97        20.98        12.00         8.05 
TCGA-AB-2881 TCGA-AB-2882 TCGA-AB-2883 TCGA-AB-2884 TCGA-AB-2885 TCGA-AB-2886 
       12.92        12.00        24.00        24.03         7.04         5.95 
TCGA-AB-2888 TCGA-AB-2889 TCGA-AB-2892 TCGA-AB-2893 TCGA-AB-2894 TCGA-AB-2895 
       10.98         9.99        30.97         6.97         5.92         5.03 
TCGA-AB-2896 TCGA-AB-2897 TCGA-AB-2898 TCGA-AB-2899 TCGA-AB-2900 TCGA-AB-2901 
        7.00         7.99        12.92        22.06         6.02         1.91 
TCGA-AB-2904 TCGA-AB-2905 TCGA-AB-2906 TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2911 
       16.96        52.93        18.97         1.02         0.99        38.99 
TCGA-AB-2912 TCGA-AB-2913 TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2917 TCGA-AB-2919 
        9.01        39.98        26.04        29.00        39.98         2.01 
TCGA-AB-2920 TCGA-AB-2923 TCGA-AB-2924 TCGA-AB-2925 TCGA-AB-2926 TCGA-AB-2927 
       12.03         1.02         2.96         7.96        14.99         2.93 
TCGA-AB-2933 TCGA-AB-2934 TCGA-AB-2935 TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2938 
        4.01         0.92         1.97         1.94         7.07         9.96 
TCGA-AB-2939 TCGA-AB-2942 TCGA-AB-2945 TCGA-AB-2947 TCGA-AB-2948 TCGA-AB-2949 
       14.96        21.07         7.99         1.02        19.07        22.98 
TCGA-AB-2950 TCGA-AB-2952 TCGA-AB-2954 TCGA-AB-2955 TCGA-AB-2956 TCGA-AB-2957 
       10.06         1.02        49.05        16.08         6.02        19.99 
TCGA-AB-2959 TCGA-AB-2963 TCGA-AB-2964 TCGA-AB-2965 TCGA-AB-2966 TCGA-AB-2967 
       16.08        53.95        41.98        11.01        28.08        34.03 
TCGA-AB-2968 TCGA-AB-2969 TCGA-AB-2970 TCGA-AB-2971 TCGA-AB-2972 TCGA-AB-2973 
       15.06        37.05        10.03        26.04         0.99        20.02 
TCGA-AB-2974 TCGA-AB-2976 TCGA-AB-2977 TCGA-AB-2978 TCGA-AB-2980 TCGA-AB-2982 
        3.02        30.08         0.99        22.98        22.98         4.90 
TCGA-AB-2983 TCGA-AB-2984 TCGA-AB-2985 TCGA-AB-2986 TCGA-AB-2987 TCGA-AB-2988 
       11.01        38.01         8.98         6.97         6.05         0.99 
TCGA-AB-2989 TCGA-AB-2990 TCGA-AB-2991 TCGA-AB-2992 TCGA-AB-2993 TCGA-AB-2994 
       12.00        15.02        60.03        56.09        25.02        59.11 
TCGA-AB-2995 TCGA-AB-2996 TCGA-AB-2998 TCGA-AB-2999 TCGA-AB-3000 TCGA-AB-3001 
       50.99        51.98         1.02        57.01        41.06        51.98 
TCGA-AB-3002 TCGA-AB-3005 TCGA-AB-3006 TCGA-AB-3007 TCGA-AB-3008 TCGA-AB-3009 
       47.05        69.01        15.91        51.98        27.02        18.94 
TCGA-AB-3011 TCGA-AB-3012 
       61.97        62.04 

  12P LOSS MUTATED 12P LOSS WILD-TYPE 
              4.04               0.92 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
              6.94              94.06 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
              5.49              12.03 
[1] "4.0 - 6.9 (5.5)"   "0.9 - 94.1 (12.0)"
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-3012 
"12P LOSS WILD-TYPE" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-3012 
"12P LOSS WILD-TYPE" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-3012 
"12P LOSS WILD-TYPE" 
[1] "Remove cluster labels:" "12P LOSS MUTATED"      
clus
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 2                164 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2856 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2857         TCGA-AB-2858         TCGA-AB-2859 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2860         TCGA-AB-2862         TCGA-AB-2863 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2864         TCGA-AB-2865         TCGA-AB-2866 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2867         TCGA-AB-2868         TCGA-AB-2869 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2870         TCGA-AB-2871         TCGA-AB-2872 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2873         TCGA-AB-2874         TCGA-AB-2875 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2877         TCGA-AB-2878         TCGA-AB-2879 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2881         TCGA-AB-2882         TCGA-AB-2883 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2884         TCGA-AB-2885         TCGA-AB-2886 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2888         TCGA-AB-2889         TCGA-AB-2892 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2893         TCGA-AB-2894         TCGA-AB-2895 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2896         TCGA-AB-2897         TCGA-AB-2898 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2899         TCGA-AB-2900         TCGA-AB-2901 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2904         TCGA-AB-2905         TCGA-AB-2906 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2908         TCGA-AB-2909         TCGA-AB-2911 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2912         TCGA-AB-2913         TCGA-AB-2914 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2916         TCGA-AB-2917         TCGA-AB-2919 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2920         TCGA-AB-2923         TCGA-AB-2924 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2925         TCGA-AB-2926         TCGA-AB-2927 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2933         TCGA-AB-2934         TCGA-AB-2935 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2936         TCGA-AB-2937         TCGA-AB-2938 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2939         TCGA-AB-2942         TCGA-AB-2945 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2947         TCGA-AB-2948         TCGA-AB-2949 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2950         TCGA-AB-2952         TCGA-AB-2954 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2955         TCGA-AB-2956         TCGA-AB-2957 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2959         TCGA-AB-2963         TCGA-AB-2964 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2965         TCGA-AB-2966         TCGA-AB-2967 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2968         TCGA-AB-2969         TCGA-AB-2970 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2971         TCGA-AB-2972         TCGA-AB-2973 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2974         TCGA-AB-2976         TCGA-AB-2977 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2978         TCGA-AB-2980         TCGA-AB-2982 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2983         TCGA-AB-2984         TCGA-AB-2985 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2986         TCGA-AB-2987         TCGA-AB-2988 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2989         TCGA-AB-2990         TCGA-AB-2991 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2992         TCGA-AB-2993         TCGA-AB-2994 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2995         TCGA-AB-2996         TCGA-AB-2998 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-2999         TCGA-AB-3000         TCGA-AB-3001 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-3002         TCGA-AB-3005         TCGA-AB-3006 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-3007         TCGA-AB-3008         TCGA-AB-3009 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-AB-3011         TCGA-AB-3012 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
D21V2, continuous
D21V3, binary
                    cls
clus                   0   1
  12P LOSS MUTATED     1   3
  12P LOSS WILD-TYPE  86 101
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      1    3
  12P LOSS WILD-TYPE   86  101
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  FEMALE                1                 86
  MALE                  3                101

Clustering(22) Variable = 15Q LOSS MUTATION ANALYSIS
D22V1, survival
                    sevent
clus2                  0   1
  15Q LOSS MUTATED     1   3
  15Q LOSS WILD-TYPE  61 101
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                 4                162 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                 3                101 
$`15Q LOSS MUTATED`
TCGA-AB-2857 TCGA-AB-2860 TCGA-AB-2939 TCGA-AB-2955 
       10.06        14.01        14.96        16.08 

$`15Q LOSS WILD-TYPE`
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 
       26.04        84.03        18.94        31.04         5.92        94.06 
TCGA-AB-2809 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2813 TCGA-AB-2814 
        2.04         1.02         7.99        12.03         1.02        26.04 
TCGA-AB-2815 TCGA-AB-2816 TCGA-AB-2817 TCGA-AB-2818 TCGA-AB-2819 TCGA-AB-2821 
       26.99         8.05         8.98         9.96        82.06        26.99 
TCGA-AB-2822 TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2828 
       31.96         0.99         6.94        24.03         8.98        75.09 
TCGA-AB-2829 TCGA-AB-2830 TCGA-AB-2831 TCGA-AB-2832 TCGA-AB-2834 TCGA-AB-2835 
        8.98         9.04        21.04        12.00         8.05        55.00 
TCGA-AB-2836 TCGA-AB-2838 TCGA-AB-2839 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2844 
       17.00        12.00        15.98         0.92        46.06         3.98 
TCGA-AB-2845 TCGA-AB-2846 TCGA-AB-2848 TCGA-AB-2849 TCGA-AB-2850 TCGA-AB-2851 
        9.96        46.09        14.96        72.99         1.97         7.96 
TCGA-AB-2853 TCGA-AB-2854 TCGA-AB-2855 TCGA-AB-2856 TCGA-AB-2858 TCGA-AB-2859 
        2.89        12.03         6.94         4.90        18.94         9.96 
TCGA-AB-2862 TCGA-AB-2863 TCGA-AB-2864 TCGA-AB-2865 TCGA-AB-2866 TCGA-AB-2867 
       47.01         1.02        18.97         2.01         5.00         6.05 
TCGA-AB-2868 TCGA-AB-2869 TCGA-AB-2870 TCGA-AB-2871 TCGA-AB-2872 TCGA-AB-2873 
        4.96         7.99         5.00         5.03        20.98         8.98 
TCGA-AB-2874 TCGA-AB-2875 TCGA-AB-2877 TCGA-AB-2878 TCGA-AB-2879 TCGA-AB-2881 
       13.02         6.97        20.98        12.00         8.05        12.92 
TCGA-AB-2882 TCGA-AB-2883 TCGA-AB-2884 TCGA-AB-2885 TCGA-AB-2886 TCGA-AB-2888 
       12.00        24.00        24.03         7.04         5.95        10.98 
TCGA-AB-2889 TCGA-AB-2892 TCGA-AB-2893 TCGA-AB-2894 TCGA-AB-2895 TCGA-AB-2896 
        9.99        30.97         6.97         5.92         5.03         7.00 
TCGA-AB-2897 TCGA-AB-2898 TCGA-AB-2899 TCGA-AB-2900 TCGA-AB-2901 TCGA-AB-2904 
        7.99        12.92        22.06         6.02         1.91        16.96 
TCGA-AB-2905 TCGA-AB-2906 TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2911 TCGA-AB-2912 
       52.93        18.97         1.02         0.99        38.99         9.01 
TCGA-AB-2913 TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2917 TCGA-AB-2919 TCGA-AB-2920 
       39.98        26.04        29.00        39.98         2.01        12.03 
TCGA-AB-2923 TCGA-AB-2924 TCGA-AB-2925 TCGA-AB-2926 TCGA-AB-2927 TCGA-AB-2929 
        1.02         2.96         7.96        14.99         2.93         4.04 
TCGA-AB-2933 TCGA-AB-2934 TCGA-AB-2935 TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2938 
        4.01         0.92         1.97         1.94         7.07         9.96 
TCGA-AB-2942 TCGA-AB-2945 TCGA-AB-2947 TCGA-AB-2948 TCGA-AB-2949 TCGA-AB-2950 
       21.07         7.99         1.02        19.07        22.98        10.06 
TCGA-AB-2952 TCGA-AB-2954 TCGA-AB-2956 TCGA-AB-2957 TCGA-AB-2959 TCGA-AB-2963 
        1.02        49.05         6.02        19.99        16.08        53.95 
TCGA-AB-2964 TCGA-AB-2965 TCGA-AB-2966 TCGA-AB-2967 TCGA-AB-2968 TCGA-AB-2969 
       41.98        11.01        28.08        34.03        15.06        37.05 
TCGA-AB-2970 TCGA-AB-2971 TCGA-AB-2972 TCGA-AB-2973 TCGA-AB-2974 TCGA-AB-2976 
       10.03        26.04         0.99        20.02         3.02        30.08 
TCGA-AB-2977 TCGA-AB-2978 TCGA-AB-2980 TCGA-AB-2982 TCGA-AB-2983 TCGA-AB-2984 
        0.99        22.98        22.98         4.90        11.01        38.01 
TCGA-AB-2985 TCGA-AB-2986 TCGA-AB-2987 TCGA-AB-2988 TCGA-AB-2989 TCGA-AB-2990 
        8.98         6.97         6.05         0.99        12.00        15.02 
TCGA-AB-2991 TCGA-AB-2992 TCGA-AB-2993 TCGA-AB-2994 TCGA-AB-2995 TCGA-AB-2996 
       60.03        56.09        25.02        59.11        50.99        51.98 
TCGA-AB-2998 TCGA-AB-2999 TCGA-AB-3000 TCGA-AB-3001 TCGA-AB-3002 TCGA-AB-3005 
        1.02        57.01        41.06        51.98        47.05        69.01 
TCGA-AB-3006 TCGA-AB-3007 TCGA-AB-3008 TCGA-AB-3009 TCGA-AB-3011 TCGA-AB-3012 
       15.91        51.98        27.02        18.94        61.97        62.04 

  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             10.06               0.92 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             16.08              94.06 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
            14.485             12.000 
[1] "10.1 - 16.1 (14.5)" "0.9 - 94.1 (12.0)" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-3012 
"15Q LOSS WILD-TYPE" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-3012 
"15Q LOSS WILD-TYPE" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-AB-3012 
"15Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D22V2, continuous
D22V3, binary
                    cls
clus                   0   1
  15Q LOSS MUTATED     2   2
  15Q LOSS WILD-TYPE  85 102
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED      2    2
  15Q LOSS WILD-TYPE   85  102
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  FEMALE                2                 85
  MALE                  2                102

Clustering(23) Variable = 16Q LOSS MUTATION ANALYSIS
D23V1, survival
                    sevent
clus2                  0   1
  16Q LOSS MUTATED     0   3
  16Q LOSS WILD-TYPE  62 101
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                 3                163 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                 3                101 
$`16Q LOSS MUTATED`
TCGA-AB-2813 TCGA-AB-2857 TCGA-AB-2878 
        1.02        10.06        12.00 

$`16Q LOSS WILD-TYPE`
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 
       26.04        84.03        18.94        31.04         5.92        94.06 
TCGA-AB-2809 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2814 TCGA-AB-2815 
        2.04         1.02         7.99        12.03        26.04        26.99 
TCGA-AB-2816 TCGA-AB-2817 TCGA-AB-2818 TCGA-AB-2819 TCGA-AB-2821 TCGA-AB-2822 
        8.05         8.98         9.96        82.06        26.99        31.96 
TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2828 TCGA-AB-2829 
        0.99         6.94        24.03         8.98        75.09         8.98 
TCGA-AB-2830 TCGA-AB-2831 TCGA-AB-2832 TCGA-AB-2834 TCGA-AB-2835 TCGA-AB-2836 
        9.04        21.04        12.00         8.05        55.00        17.00 
TCGA-AB-2838 TCGA-AB-2839 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2844 TCGA-AB-2845 
       12.00        15.98         0.92        46.06         3.98         9.96 
TCGA-AB-2846 TCGA-AB-2848 TCGA-AB-2849 TCGA-AB-2850 TCGA-AB-2851 TCGA-AB-2853 
       46.09        14.96        72.99         1.97         7.96         2.89 
TCGA-AB-2854 TCGA-AB-2855 TCGA-AB-2856 TCGA-AB-2858 TCGA-AB-2859 TCGA-AB-2860 
       12.03         6.94         4.90        18.94         9.96        14.01 
TCGA-AB-2862 TCGA-AB-2863 TCGA-AB-2864 TCGA-AB-2865 TCGA-AB-2866 TCGA-AB-2867 
       47.01         1.02        18.97         2.01         5.00         6.05 
TCGA-AB-2868 TCGA-AB-2869 TCGA-AB-2870 TCGA-AB-2871 TCGA-AB-2872 TCGA-AB-2873 
        4.96         7.99         5.00         5.03        20.98         8.98 
TCGA-AB-2874 TCGA-AB-2875 TCGA-AB-2877 TCGA-AB-2879 TCGA-AB-2881 TCGA-AB-2882 
       13.02         6.97        20.98         8.05        12.92        12.00 
TCGA-AB-2883 TCGA-AB-2884 TCGA-AB-2885 TCGA-AB-2886 TCGA-AB-2888 TCGA-AB-2889 
       24.00        24.03         7.04         5.95        10.98         9.99 
TCGA-AB-2892 TCGA-AB-2893 TCGA-AB-2894 TCGA-AB-2895 TCGA-AB-2896 TCGA-AB-2897 
       30.97         6.97         5.92         5.03         7.00         7.99 
TCGA-AB-2898 TCGA-AB-2899 TCGA-AB-2900 TCGA-AB-2901 TCGA-AB-2904 TCGA-AB-2905 
       12.92        22.06         6.02         1.91        16.96        52.93 
TCGA-AB-2906 TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2911 TCGA-AB-2912 TCGA-AB-2913 
       18.97         1.02         0.99        38.99         9.01        39.98 
TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2917 TCGA-AB-2919 TCGA-AB-2920 TCGA-AB-2923 
       26.04        29.00        39.98         2.01        12.03         1.02 
TCGA-AB-2924 TCGA-AB-2925 TCGA-AB-2926 TCGA-AB-2927 TCGA-AB-2929 TCGA-AB-2933 
        2.96         7.96        14.99         2.93         4.04         4.01 
TCGA-AB-2934 TCGA-AB-2935 TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2938 TCGA-AB-2939 
        0.92         1.97         1.94         7.07         9.96        14.96 
TCGA-AB-2942 TCGA-AB-2945 TCGA-AB-2947 TCGA-AB-2948 TCGA-AB-2949 TCGA-AB-2950 
       21.07         7.99         1.02        19.07        22.98        10.06 
TCGA-AB-2952 TCGA-AB-2954 TCGA-AB-2955 TCGA-AB-2956 TCGA-AB-2957 TCGA-AB-2959 
        1.02        49.05        16.08         6.02        19.99        16.08 
TCGA-AB-2963 TCGA-AB-2964 TCGA-AB-2965 TCGA-AB-2966 TCGA-AB-2967 TCGA-AB-2968 
       53.95        41.98        11.01        28.08        34.03        15.06 
TCGA-AB-2969 TCGA-AB-2970 TCGA-AB-2971 TCGA-AB-2972 TCGA-AB-2973 TCGA-AB-2974 
       37.05        10.03        26.04         0.99        20.02         3.02 
TCGA-AB-2976 TCGA-AB-2977 TCGA-AB-2978 TCGA-AB-2980 TCGA-AB-2982 TCGA-AB-2983 
       30.08         0.99        22.98        22.98         4.90        11.01 
TCGA-AB-2984 TCGA-AB-2985 TCGA-AB-2986 TCGA-AB-2987 TCGA-AB-2988 TCGA-AB-2989 
       38.01         8.98         6.97         6.05         0.99        12.00 
TCGA-AB-2990 TCGA-AB-2991 TCGA-AB-2992 TCGA-AB-2993 TCGA-AB-2994 TCGA-AB-2995 
       15.02        60.03        56.09        25.02        59.11        50.99 
TCGA-AB-2996 TCGA-AB-2998 TCGA-AB-2999 TCGA-AB-3000 TCGA-AB-3001 TCGA-AB-3002 
       51.98         1.02        57.01        41.06        51.98        47.05 
TCGA-AB-3005 TCGA-AB-3006 TCGA-AB-3007 TCGA-AB-3008 TCGA-AB-3009 TCGA-AB-3011 
       69.01        15.91        51.98        27.02        18.94        61.97 
TCGA-AB-3012 
       62.04 

  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
              1.02               0.92 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
             12.00              94.06 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
             10.06              12.03 
[1] "1.0 - 12.0 (10.1)" "0.9 - 94.1 (12.0)"
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-3012 
"16Q LOSS WILD-TYPE" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-3012 
"16Q LOSS WILD-TYPE" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-AB-3012 
"16Q LOSS WILD-TYPE" 
[1] "hr=" "3"  
D23V2, continuous
D23V3, binary
                    cls
clus                   0   1
  16Q LOSS MUTATED     1   3
  16Q LOSS WILD-TYPE  86 101
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      1    3
  16Q LOSS WILD-TYPE   86  101
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  FEMALE                1                 86
  MALE                  3                101

Clustering(24) Variable = 17P LOSS MUTATION ANALYSIS
D24V1, survival
                    sevent
clus2                 0  1
  17P LOSS MUTATED    2 10
  17P LOSS WILD-TYPE 60 94
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                12                154 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                10                 94 
$`17P LOSS MUTATED`
TCGA-AB-2813 TCGA-AB-2838 TCGA-AB-2849 TCGA-AB-2855 TCGA-AB-2857 TCGA-AB-2860 
        1.02        12.00        72.99         6.94        10.06        14.01 
TCGA-AB-2908 TCGA-AB-2917 TCGA-AB-2920 TCGA-AB-2933 TCGA-AB-2935 TCGA-AB-2955 
        1.02        39.98        12.03         4.01         1.97        16.08 

$`17P LOSS WILD-TYPE`
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 
       26.04        84.03        18.94        31.04         5.92        94.06 
TCGA-AB-2809 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2814 TCGA-AB-2815 
        2.04         1.02         7.99        12.03        26.04        26.99 
TCGA-AB-2816 TCGA-AB-2817 TCGA-AB-2818 TCGA-AB-2819 TCGA-AB-2821 TCGA-AB-2822 
        8.05         8.98         9.96        82.06        26.99        31.96 
TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2828 TCGA-AB-2829 
        0.99         6.94        24.03         8.98        75.09         8.98 
TCGA-AB-2830 TCGA-AB-2831 TCGA-AB-2832 TCGA-AB-2834 TCGA-AB-2835 TCGA-AB-2836 
        9.04        21.04        12.00         8.05        55.00        17.00 
TCGA-AB-2839 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2844 TCGA-AB-2845 TCGA-AB-2846 
       15.98         0.92        46.06         3.98         9.96        46.09 
TCGA-AB-2848 TCGA-AB-2850 TCGA-AB-2851 TCGA-AB-2853 TCGA-AB-2854 TCGA-AB-2856 
       14.96         1.97         7.96         2.89        12.03         4.90 
TCGA-AB-2858 TCGA-AB-2859 TCGA-AB-2862 TCGA-AB-2863 TCGA-AB-2864 TCGA-AB-2865 
       18.94         9.96        47.01         1.02        18.97         2.01 
TCGA-AB-2866 TCGA-AB-2867 TCGA-AB-2868 TCGA-AB-2869 TCGA-AB-2870 TCGA-AB-2871 
        5.00         6.05         4.96         7.99         5.00         5.03 
TCGA-AB-2872 TCGA-AB-2873 TCGA-AB-2874 TCGA-AB-2875 TCGA-AB-2877 TCGA-AB-2878 
       20.98         8.98        13.02         6.97        20.98        12.00 
TCGA-AB-2879 TCGA-AB-2881 TCGA-AB-2882 TCGA-AB-2883 TCGA-AB-2884 TCGA-AB-2885 
        8.05        12.92        12.00        24.00        24.03         7.04 
TCGA-AB-2886 TCGA-AB-2888 TCGA-AB-2889 TCGA-AB-2892 TCGA-AB-2893 TCGA-AB-2894 
        5.95        10.98         9.99        30.97         6.97         5.92 
TCGA-AB-2895 TCGA-AB-2896 TCGA-AB-2897 TCGA-AB-2898 TCGA-AB-2899 TCGA-AB-2900 
        5.03         7.00         7.99        12.92        22.06         6.02 
TCGA-AB-2901 TCGA-AB-2904 TCGA-AB-2905 TCGA-AB-2906 TCGA-AB-2909 TCGA-AB-2911 
        1.91        16.96        52.93        18.97         0.99        38.99 
TCGA-AB-2912 TCGA-AB-2913 TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2919 TCGA-AB-2923 
        9.01        39.98        26.04        29.00         2.01         1.02 
TCGA-AB-2924 TCGA-AB-2925 TCGA-AB-2926 TCGA-AB-2927 TCGA-AB-2929 TCGA-AB-2934 
        2.96         7.96        14.99         2.93         4.04         0.92 
TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2938 TCGA-AB-2939 TCGA-AB-2942 TCGA-AB-2945 
        1.94         7.07         9.96        14.96        21.07         7.99 
TCGA-AB-2947 TCGA-AB-2948 TCGA-AB-2949 TCGA-AB-2950 TCGA-AB-2952 TCGA-AB-2954 
        1.02        19.07        22.98        10.06         1.02        49.05 
TCGA-AB-2956 TCGA-AB-2957 TCGA-AB-2959 TCGA-AB-2963 TCGA-AB-2964 TCGA-AB-2965 
        6.02        19.99        16.08        53.95        41.98        11.01 
TCGA-AB-2966 TCGA-AB-2967 TCGA-AB-2968 TCGA-AB-2969 TCGA-AB-2970 TCGA-AB-2971 
       28.08        34.03        15.06        37.05        10.03        26.04 
TCGA-AB-2972 TCGA-AB-2973 TCGA-AB-2974 TCGA-AB-2976 TCGA-AB-2977 TCGA-AB-2978 
        0.99        20.02         3.02        30.08         0.99        22.98 
TCGA-AB-2980 TCGA-AB-2982 TCGA-AB-2983 TCGA-AB-2984 TCGA-AB-2985 TCGA-AB-2986 
       22.98         4.90        11.01        38.01         8.98         6.97 
TCGA-AB-2987 TCGA-AB-2988 TCGA-AB-2989 TCGA-AB-2990 TCGA-AB-2991 TCGA-AB-2992 
        6.05         0.99        12.00        15.02        60.03        56.09 
TCGA-AB-2993 TCGA-AB-2994 TCGA-AB-2995 TCGA-AB-2996 TCGA-AB-2998 TCGA-AB-2999 
       25.02        59.11        50.99        51.98         1.02        57.01 
TCGA-AB-3000 TCGA-AB-3001 TCGA-AB-3002 TCGA-AB-3005 TCGA-AB-3006 TCGA-AB-3007 
       41.06        51.98        47.05        69.01        15.91        51.98 
TCGA-AB-3008 TCGA-AB-3009 TCGA-AB-3011 TCGA-AB-3012 
       27.02        18.94        61.97        62.04 

  17P LOSS MUTATED 17P LOSS WILD-TYPE 
              1.02               0.92 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
             72.99              94.06 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
             11.03              12.03 
[1] "1.0 - 73.0 (11.0)" "0.9 - 94.1 (12.0)"
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-AB-3012 
"17P LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D24V2, continuous
D24V3, binary
                    cls
clus                  0  1
  17P LOSS MUTATED    3 10
  17P LOSS WILD-TYPE 84 94
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED      3   10
  17P LOSS WILD-TYPE   84   94
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  FEMALE                3                 84
  MALE                 10                 94

Clustering(25) Variable = 17Q LOSS MUTATION ANALYSIS
D25V1, survival
                    sevent
clus2                 0  1
  17Q LOSS MUTATED    1  5
  17Q LOSS WILD-TYPE 61 99
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 6                160 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 5                 99 
$`17Q LOSS MUTATED`
TCGA-AB-2813 TCGA-AB-2838 TCGA-AB-2849 TCGA-AB-2860 TCGA-AB-2935 TCGA-AB-2955 
        1.02        12.00        72.99        14.01         1.97        16.08 

$`17Q LOSS WILD-TYPE`
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 
       26.04        84.03        18.94        31.04         5.92        94.06 
TCGA-AB-2809 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2814 TCGA-AB-2815 
        2.04         1.02         7.99        12.03        26.04        26.99 
TCGA-AB-2816 TCGA-AB-2817 TCGA-AB-2818 TCGA-AB-2819 TCGA-AB-2821 TCGA-AB-2822 
        8.05         8.98         9.96        82.06        26.99        31.96 
TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2828 TCGA-AB-2829 
        0.99         6.94        24.03         8.98        75.09         8.98 
TCGA-AB-2830 TCGA-AB-2831 TCGA-AB-2832 TCGA-AB-2834 TCGA-AB-2835 TCGA-AB-2836 
        9.04        21.04        12.00         8.05        55.00        17.00 
TCGA-AB-2839 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2844 TCGA-AB-2845 TCGA-AB-2846 
       15.98         0.92        46.06         3.98         9.96        46.09 
TCGA-AB-2848 TCGA-AB-2850 TCGA-AB-2851 TCGA-AB-2853 TCGA-AB-2854 TCGA-AB-2855 
       14.96         1.97         7.96         2.89        12.03         6.94 
TCGA-AB-2856 TCGA-AB-2857 TCGA-AB-2858 TCGA-AB-2859 TCGA-AB-2862 TCGA-AB-2863 
        4.90        10.06        18.94         9.96        47.01         1.02 
TCGA-AB-2864 TCGA-AB-2865 TCGA-AB-2866 TCGA-AB-2867 TCGA-AB-2868 TCGA-AB-2869 
       18.97         2.01         5.00         6.05         4.96         7.99 
TCGA-AB-2870 TCGA-AB-2871 TCGA-AB-2872 TCGA-AB-2873 TCGA-AB-2874 TCGA-AB-2875 
        5.00         5.03        20.98         8.98        13.02         6.97 
TCGA-AB-2877 TCGA-AB-2878 TCGA-AB-2879 TCGA-AB-2881 TCGA-AB-2882 TCGA-AB-2883 
       20.98        12.00         8.05        12.92        12.00        24.00 
TCGA-AB-2884 TCGA-AB-2885 TCGA-AB-2886 TCGA-AB-2888 TCGA-AB-2889 TCGA-AB-2892 
       24.03         7.04         5.95        10.98         9.99        30.97 
TCGA-AB-2893 TCGA-AB-2894 TCGA-AB-2895 TCGA-AB-2896 TCGA-AB-2897 TCGA-AB-2898 
        6.97         5.92         5.03         7.00         7.99        12.92 
TCGA-AB-2899 TCGA-AB-2900 TCGA-AB-2901 TCGA-AB-2904 TCGA-AB-2905 TCGA-AB-2906 
       22.06         6.02         1.91        16.96        52.93        18.97 
TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2911 TCGA-AB-2912 TCGA-AB-2913 TCGA-AB-2914 
        1.02         0.99        38.99         9.01        39.98        26.04 
TCGA-AB-2916 TCGA-AB-2917 TCGA-AB-2919 TCGA-AB-2920 TCGA-AB-2923 TCGA-AB-2924 
       29.00        39.98         2.01        12.03         1.02         2.96 
TCGA-AB-2925 TCGA-AB-2926 TCGA-AB-2927 TCGA-AB-2929 TCGA-AB-2933 TCGA-AB-2934 
        7.96        14.99         2.93         4.04         4.01         0.92 
TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2938 TCGA-AB-2939 TCGA-AB-2942 TCGA-AB-2945 
        1.94         7.07         9.96        14.96        21.07         7.99 
TCGA-AB-2947 TCGA-AB-2948 TCGA-AB-2949 TCGA-AB-2950 TCGA-AB-2952 TCGA-AB-2954 
        1.02        19.07        22.98        10.06         1.02        49.05 
TCGA-AB-2956 TCGA-AB-2957 TCGA-AB-2959 TCGA-AB-2963 TCGA-AB-2964 TCGA-AB-2965 
        6.02        19.99        16.08        53.95        41.98        11.01 
TCGA-AB-2966 TCGA-AB-2967 TCGA-AB-2968 TCGA-AB-2969 TCGA-AB-2970 TCGA-AB-2971 
       28.08        34.03        15.06        37.05        10.03        26.04 
TCGA-AB-2972 TCGA-AB-2973 TCGA-AB-2974 TCGA-AB-2976 TCGA-AB-2977 TCGA-AB-2978 
        0.99        20.02         3.02        30.08         0.99        22.98 
TCGA-AB-2980 TCGA-AB-2982 TCGA-AB-2983 TCGA-AB-2984 TCGA-AB-2985 TCGA-AB-2986 
       22.98         4.90        11.01        38.01         8.98         6.97 
TCGA-AB-2987 TCGA-AB-2988 TCGA-AB-2989 TCGA-AB-2990 TCGA-AB-2991 TCGA-AB-2992 
        6.05         0.99        12.00        15.02        60.03        56.09 
TCGA-AB-2993 TCGA-AB-2994 TCGA-AB-2995 TCGA-AB-2996 TCGA-AB-2998 TCGA-AB-2999 
       25.02        59.11        50.99        51.98         1.02        57.01 
TCGA-AB-3000 TCGA-AB-3001 TCGA-AB-3002 TCGA-AB-3005 TCGA-AB-3006 TCGA-AB-3007 
       41.06        51.98        47.05        69.01        15.91        51.98 
TCGA-AB-3008 TCGA-AB-3009 TCGA-AB-3011 TCGA-AB-3012 
       27.02        18.94        61.97        62.04 

  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
              1.02               0.92 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
             72.99              94.06 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
            13.005             12.015 
[1] "1.0 - 73.0 (13.0)" "0.9 - 94.1 (12.0)"
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-3012 
"17Q LOSS WILD-TYPE" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-3012 
"17Q LOSS WILD-TYPE" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-AB-3012 
"17Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D25V2, continuous
D25V3, binary
                    cls
clus                  0  1
  17Q LOSS MUTATED    2  5
  17Q LOSS WILD-TYPE 85 99
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      2    5
  17Q LOSS WILD-TYPE   85   99
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  FEMALE                2                 85
  MALE                  5                 99

Clustering(26) Variable = 18P LOSS MUTATION ANALYSIS
D26V1, survival
                    sevent
clus2                 0  1
  18P LOSS MUTATED    0  5
  18P LOSS WILD-TYPE 62 99
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                 5                161 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                 5                 99 
$`18P LOSS MUTATED`
TCGA-AB-2813 TCGA-AB-2829 TCGA-AB-2885 TCGA-AB-2920 TCGA-AB-2935 
        1.02         8.98         7.04        12.03         1.97 

$`18P LOSS WILD-TYPE`
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 
       26.04        84.03        18.94        31.04         5.92        94.06 
TCGA-AB-2809 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2814 TCGA-AB-2815 
        2.04         1.02         7.99        12.03        26.04        26.99 
TCGA-AB-2816 TCGA-AB-2817 TCGA-AB-2818 TCGA-AB-2819 TCGA-AB-2821 TCGA-AB-2822 
        8.05         8.98         9.96        82.06        26.99        31.96 
TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2828 TCGA-AB-2830 
        0.99         6.94        24.03         8.98        75.09         9.04 
TCGA-AB-2831 TCGA-AB-2832 TCGA-AB-2834 TCGA-AB-2835 TCGA-AB-2836 TCGA-AB-2838 
       21.04        12.00         8.05        55.00        17.00        12.00 
TCGA-AB-2839 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2844 TCGA-AB-2845 TCGA-AB-2846 
       15.98         0.92        46.06         3.98         9.96        46.09 
TCGA-AB-2848 TCGA-AB-2849 TCGA-AB-2850 TCGA-AB-2851 TCGA-AB-2853 TCGA-AB-2854 
       14.96        72.99         1.97         7.96         2.89        12.03 
TCGA-AB-2855 TCGA-AB-2856 TCGA-AB-2857 TCGA-AB-2858 TCGA-AB-2859 TCGA-AB-2860 
        6.94         4.90        10.06        18.94         9.96        14.01 
TCGA-AB-2862 TCGA-AB-2863 TCGA-AB-2864 TCGA-AB-2865 TCGA-AB-2866 TCGA-AB-2867 
       47.01         1.02        18.97         2.01         5.00         6.05 
TCGA-AB-2868 TCGA-AB-2869 TCGA-AB-2870 TCGA-AB-2871 TCGA-AB-2872 TCGA-AB-2873 
        4.96         7.99         5.00         5.03        20.98         8.98 
TCGA-AB-2874 TCGA-AB-2875 TCGA-AB-2877 TCGA-AB-2878 TCGA-AB-2879 TCGA-AB-2881 
       13.02         6.97        20.98        12.00         8.05        12.92 
TCGA-AB-2882 TCGA-AB-2883 TCGA-AB-2884 TCGA-AB-2886 TCGA-AB-2888 TCGA-AB-2889 
       12.00        24.00        24.03         5.95        10.98         9.99 
TCGA-AB-2892 TCGA-AB-2893 TCGA-AB-2894 TCGA-AB-2895 TCGA-AB-2896 TCGA-AB-2897 
       30.97         6.97         5.92         5.03         7.00         7.99 
TCGA-AB-2898 TCGA-AB-2899 TCGA-AB-2900 TCGA-AB-2901 TCGA-AB-2904 TCGA-AB-2905 
       12.92        22.06         6.02         1.91        16.96        52.93 
TCGA-AB-2906 TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2911 TCGA-AB-2912 TCGA-AB-2913 
       18.97         1.02         0.99        38.99         9.01        39.98 
TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2917 TCGA-AB-2919 TCGA-AB-2923 TCGA-AB-2924 
       26.04        29.00        39.98         2.01         1.02         2.96 
TCGA-AB-2925 TCGA-AB-2926 TCGA-AB-2927 TCGA-AB-2929 TCGA-AB-2933 TCGA-AB-2934 
        7.96        14.99         2.93         4.04         4.01         0.92 
TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2938 TCGA-AB-2939 TCGA-AB-2942 TCGA-AB-2945 
        1.94         7.07         9.96        14.96        21.07         7.99 
TCGA-AB-2947 TCGA-AB-2948 TCGA-AB-2949 TCGA-AB-2950 TCGA-AB-2952 TCGA-AB-2954 
        1.02        19.07        22.98        10.06         1.02        49.05 
TCGA-AB-2955 TCGA-AB-2956 TCGA-AB-2957 TCGA-AB-2959 TCGA-AB-2963 TCGA-AB-2964 
       16.08         6.02        19.99        16.08        53.95        41.98 
TCGA-AB-2965 TCGA-AB-2966 TCGA-AB-2967 TCGA-AB-2968 TCGA-AB-2969 TCGA-AB-2970 
       11.01        28.08        34.03        15.06        37.05        10.03 
TCGA-AB-2971 TCGA-AB-2972 TCGA-AB-2973 TCGA-AB-2974 TCGA-AB-2976 TCGA-AB-2977 
       26.04         0.99        20.02         3.02        30.08         0.99 
TCGA-AB-2978 TCGA-AB-2980 TCGA-AB-2982 TCGA-AB-2983 TCGA-AB-2984 TCGA-AB-2985 
       22.98        22.98         4.90        11.01        38.01         8.98 
TCGA-AB-2986 TCGA-AB-2987 TCGA-AB-2988 TCGA-AB-2989 TCGA-AB-2990 TCGA-AB-2991 
        6.97         6.05         0.99        12.00        15.02        60.03 
TCGA-AB-2992 TCGA-AB-2993 TCGA-AB-2994 TCGA-AB-2995 TCGA-AB-2996 TCGA-AB-2998 
       56.09        25.02        59.11        50.99        51.98         1.02 
TCGA-AB-2999 TCGA-AB-3000 TCGA-AB-3001 TCGA-AB-3002 TCGA-AB-3005 TCGA-AB-3006 
       57.01        41.06        51.98        47.05        69.01        15.91 
TCGA-AB-3007 TCGA-AB-3008 TCGA-AB-3009 TCGA-AB-3011 TCGA-AB-3012 
       51.98        27.02        18.94        61.97        62.04 

  18P LOSS MUTATED 18P LOSS WILD-TYPE 
              1.02               0.92 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
             12.03              94.06 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
              7.04              12.03 
[1] "1.0 - 12.0 (7.0)"  "0.9 - 94.1 (12.0)"
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-3012 
"18P LOSS WILD-TYPE" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-3012 
"18P LOSS WILD-TYPE" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-AB-3012 
"18P LOSS WILD-TYPE" 
[1] "hr=" "3.9"
D26V2, continuous
D26V3, binary
                    cls
clus                  0  1
  18P LOSS MUTATED    0  5
  18P LOSS WILD-TYPE 87 99
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED      0    5
  18P LOSS WILD-TYPE   87   99
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  FEMALE                0                 87
  MALE                  5                 99

Clustering(27) Variable = 18Q LOSS MUTATION ANALYSIS
D27V1, survival
                    sevent
clus2                  0   1
  18Q LOSS MUTATED     0   4
  18Q LOSS WILD-TYPE  62 100
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                 4                162 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                 4                100 
$`18Q LOSS MUTATED`
TCGA-AB-2813 TCGA-AB-2885 TCGA-AB-2935 TCGA-AB-2938 
        1.02         7.04         1.97         9.96 

$`18Q LOSS WILD-TYPE`
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 
       26.04        84.03        18.94        31.04         5.92        94.06 
TCGA-AB-2809 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2814 TCGA-AB-2815 
        2.04         1.02         7.99        12.03        26.04        26.99 
TCGA-AB-2816 TCGA-AB-2817 TCGA-AB-2818 TCGA-AB-2819 TCGA-AB-2821 TCGA-AB-2822 
        8.05         8.98         9.96        82.06        26.99        31.96 
TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2828 TCGA-AB-2829 
        0.99         6.94        24.03         8.98        75.09         8.98 
TCGA-AB-2830 TCGA-AB-2831 TCGA-AB-2832 TCGA-AB-2834 TCGA-AB-2835 TCGA-AB-2836 
        9.04        21.04        12.00         8.05        55.00        17.00 
TCGA-AB-2838 TCGA-AB-2839 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2844 TCGA-AB-2845 
       12.00        15.98         0.92        46.06         3.98         9.96 
TCGA-AB-2846 TCGA-AB-2848 TCGA-AB-2849 TCGA-AB-2850 TCGA-AB-2851 TCGA-AB-2853 
       46.09        14.96        72.99         1.97         7.96         2.89 
TCGA-AB-2854 TCGA-AB-2855 TCGA-AB-2856 TCGA-AB-2857 TCGA-AB-2858 TCGA-AB-2859 
       12.03         6.94         4.90        10.06        18.94         9.96 
TCGA-AB-2860 TCGA-AB-2862 TCGA-AB-2863 TCGA-AB-2864 TCGA-AB-2865 TCGA-AB-2866 
       14.01        47.01         1.02        18.97         2.01         5.00 
TCGA-AB-2867 TCGA-AB-2868 TCGA-AB-2869 TCGA-AB-2870 TCGA-AB-2871 TCGA-AB-2872 
        6.05         4.96         7.99         5.00         5.03        20.98 
TCGA-AB-2873 TCGA-AB-2874 TCGA-AB-2875 TCGA-AB-2877 TCGA-AB-2878 TCGA-AB-2879 
        8.98        13.02         6.97        20.98        12.00         8.05 
TCGA-AB-2881 TCGA-AB-2882 TCGA-AB-2883 TCGA-AB-2884 TCGA-AB-2886 TCGA-AB-2888 
       12.92        12.00        24.00        24.03         5.95        10.98 
TCGA-AB-2889 TCGA-AB-2892 TCGA-AB-2893 TCGA-AB-2894 TCGA-AB-2895 TCGA-AB-2896 
        9.99        30.97         6.97         5.92         5.03         7.00 
TCGA-AB-2897 TCGA-AB-2898 TCGA-AB-2899 TCGA-AB-2900 TCGA-AB-2901 TCGA-AB-2904 
        7.99        12.92        22.06         6.02         1.91        16.96 
TCGA-AB-2905 TCGA-AB-2906 TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2911 TCGA-AB-2912 
       52.93        18.97         1.02         0.99        38.99         9.01 
TCGA-AB-2913 TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2917 TCGA-AB-2919 TCGA-AB-2920 
       39.98        26.04        29.00        39.98         2.01        12.03 
TCGA-AB-2923 TCGA-AB-2924 TCGA-AB-2925 TCGA-AB-2926 TCGA-AB-2927 TCGA-AB-2929 
        1.02         2.96         7.96        14.99         2.93         4.04 
TCGA-AB-2933 TCGA-AB-2934 TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2939 TCGA-AB-2942 
        4.01         0.92         1.94         7.07        14.96        21.07 
TCGA-AB-2945 TCGA-AB-2947 TCGA-AB-2948 TCGA-AB-2949 TCGA-AB-2950 TCGA-AB-2952 
        7.99         1.02        19.07        22.98        10.06         1.02 
TCGA-AB-2954 TCGA-AB-2955 TCGA-AB-2956 TCGA-AB-2957 TCGA-AB-2959 TCGA-AB-2963 
       49.05        16.08         6.02        19.99        16.08        53.95 
TCGA-AB-2964 TCGA-AB-2965 TCGA-AB-2966 TCGA-AB-2967 TCGA-AB-2968 TCGA-AB-2969 
       41.98        11.01        28.08        34.03        15.06        37.05 
TCGA-AB-2970 TCGA-AB-2971 TCGA-AB-2972 TCGA-AB-2973 TCGA-AB-2974 TCGA-AB-2976 
       10.03        26.04         0.99        20.02         3.02        30.08 
TCGA-AB-2977 TCGA-AB-2978 TCGA-AB-2980 TCGA-AB-2982 TCGA-AB-2983 TCGA-AB-2984 
        0.99        22.98        22.98         4.90        11.01        38.01 
TCGA-AB-2985 TCGA-AB-2986 TCGA-AB-2987 TCGA-AB-2988 TCGA-AB-2989 TCGA-AB-2990 
        8.98         6.97         6.05         0.99        12.00        15.02 
TCGA-AB-2991 TCGA-AB-2992 TCGA-AB-2993 TCGA-AB-2994 TCGA-AB-2995 TCGA-AB-2996 
       60.03        56.09        25.02        59.11        50.99        51.98 
TCGA-AB-2998 TCGA-AB-2999 TCGA-AB-3000 TCGA-AB-3001 TCGA-AB-3002 TCGA-AB-3005 
        1.02        57.01        41.06        51.98        47.05        69.01 
TCGA-AB-3006 TCGA-AB-3007 TCGA-AB-3008 TCGA-AB-3009 TCGA-AB-3011 TCGA-AB-3012 
       15.91        51.98        27.02        18.94        61.97        62.04 

  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
              1.02               0.92 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
              9.96              94.06 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
             4.505             12.030 
[1] "1.0 - 10.0 (4.5)"  "0.9 - 94.1 (12.0)"
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-3012 
"18Q LOSS WILD-TYPE" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-3012 
"18Q LOSS WILD-TYPE" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-AB-3012 
"18Q LOSS WILD-TYPE" 
[1] "hr=" "5"  
D27V2, continuous
D27V3, binary
                    cls
clus                   0   1
  18Q LOSS MUTATED     0   4
  18Q LOSS WILD-TYPE  87 100
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED      0    4
  18Q LOSS WILD-TYPE   87  100
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  FEMALE                0                 87
  MALE                  4                100

Clustering(28) Variable = 19P LOSS MUTATION ANALYSIS
D28V1, survival
                    sevent
clus2                  0   1
  19P LOSS MUTATED     0   3
  19P LOSS WILD-TYPE  62 101
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 3                163 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 3                101 
$`19P LOSS MUTATED`
TCGA-AB-2813 TCGA-AB-2885 TCGA-AB-2955 
        1.02         7.04        16.08 

$`19P LOSS WILD-TYPE`
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 
       26.04        84.03        18.94        31.04         5.92        94.06 
TCGA-AB-2809 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2814 TCGA-AB-2815 
        2.04         1.02         7.99        12.03        26.04        26.99 
TCGA-AB-2816 TCGA-AB-2817 TCGA-AB-2818 TCGA-AB-2819 TCGA-AB-2821 TCGA-AB-2822 
        8.05         8.98         9.96        82.06        26.99        31.96 
TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2828 TCGA-AB-2829 
        0.99         6.94        24.03         8.98        75.09         8.98 
TCGA-AB-2830 TCGA-AB-2831 TCGA-AB-2832 TCGA-AB-2834 TCGA-AB-2835 TCGA-AB-2836 
        9.04        21.04        12.00         8.05        55.00        17.00 
TCGA-AB-2838 TCGA-AB-2839 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2844 TCGA-AB-2845 
       12.00        15.98         0.92        46.06         3.98         9.96 
TCGA-AB-2846 TCGA-AB-2848 TCGA-AB-2849 TCGA-AB-2850 TCGA-AB-2851 TCGA-AB-2853 
       46.09        14.96        72.99         1.97         7.96         2.89 
TCGA-AB-2854 TCGA-AB-2855 TCGA-AB-2856 TCGA-AB-2857 TCGA-AB-2858 TCGA-AB-2859 
       12.03         6.94         4.90        10.06        18.94         9.96 
TCGA-AB-2860 TCGA-AB-2862 TCGA-AB-2863 TCGA-AB-2864 TCGA-AB-2865 TCGA-AB-2866 
       14.01        47.01         1.02        18.97         2.01         5.00 
TCGA-AB-2867 TCGA-AB-2868 TCGA-AB-2869 TCGA-AB-2870 TCGA-AB-2871 TCGA-AB-2872 
        6.05         4.96         7.99         5.00         5.03        20.98 
TCGA-AB-2873 TCGA-AB-2874 TCGA-AB-2875 TCGA-AB-2877 TCGA-AB-2878 TCGA-AB-2879 
        8.98        13.02         6.97        20.98        12.00         8.05 
TCGA-AB-2881 TCGA-AB-2882 TCGA-AB-2883 TCGA-AB-2884 TCGA-AB-2886 TCGA-AB-2888 
       12.92        12.00        24.00        24.03         5.95        10.98 
TCGA-AB-2889 TCGA-AB-2892 TCGA-AB-2893 TCGA-AB-2894 TCGA-AB-2895 TCGA-AB-2896 
        9.99        30.97         6.97         5.92         5.03         7.00 
TCGA-AB-2897 TCGA-AB-2898 TCGA-AB-2899 TCGA-AB-2900 TCGA-AB-2901 TCGA-AB-2904 
        7.99        12.92        22.06         6.02         1.91        16.96 
TCGA-AB-2905 TCGA-AB-2906 TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2911 TCGA-AB-2912 
       52.93        18.97         1.02         0.99        38.99         9.01 
TCGA-AB-2913 TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2917 TCGA-AB-2919 TCGA-AB-2920 
       39.98        26.04        29.00        39.98         2.01        12.03 
TCGA-AB-2923 TCGA-AB-2924 TCGA-AB-2925 TCGA-AB-2926 TCGA-AB-2927 TCGA-AB-2929 
        1.02         2.96         7.96        14.99         2.93         4.04 
TCGA-AB-2933 TCGA-AB-2934 TCGA-AB-2935 TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2938 
        4.01         0.92         1.97         1.94         7.07         9.96 
TCGA-AB-2939 TCGA-AB-2942 TCGA-AB-2945 TCGA-AB-2947 TCGA-AB-2948 TCGA-AB-2949 
       14.96        21.07         7.99         1.02        19.07        22.98 
TCGA-AB-2950 TCGA-AB-2952 TCGA-AB-2954 TCGA-AB-2956 TCGA-AB-2957 TCGA-AB-2959 
       10.06         1.02        49.05         6.02        19.99        16.08 
TCGA-AB-2963 TCGA-AB-2964 TCGA-AB-2965 TCGA-AB-2966 TCGA-AB-2967 TCGA-AB-2968 
       53.95        41.98        11.01        28.08        34.03        15.06 
TCGA-AB-2969 TCGA-AB-2970 TCGA-AB-2971 TCGA-AB-2972 TCGA-AB-2973 TCGA-AB-2974 
       37.05        10.03        26.04         0.99        20.02         3.02 
TCGA-AB-2976 TCGA-AB-2977 TCGA-AB-2978 TCGA-AB-2980 TCGA-AB-2982 TCGA-AB-2983 
       30.08         0.99        22.98        22.98         4.90        11.01 
TCGA-AB-2984 TCGA-AB-2985 TCGA-AB-2986 TCGA-AB-2987 TCGA-AB-2988 TCGA-AB-2989 
       38.01         8.98         6.97         6.05         0.99        12.00 
TCGA-AB-2990 TCGA-AB-2991 TCGA-AB-2992 TCGA-AB-2993 TCGA-AB-2994 TCGA-AB-2995 
       15.02        60.03        56.09        25.02        59.11        50.99 
TCGA-AB-2996 TCGA-AB-2998 TCGA-AB-2999 TCGA-AB-3000 TCGA-AB-3001 TCGA-AB-3002 
       51.98         1.02        57.01        41.06        51.98        47.05 
TCGA-AB-3005 TCGA-AB-3006 TCGA-AB-3007 TCGA-AB-3008 TCGA-AB-3009 TCGA-AB-3011 
       69.01        15.91        51.98        27.02        18.94        61.97 
TCGA-AB-3012 
       62.04 

  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              1.02               0.92 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
             16.08              94.06 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              7.04              12.03 
[1] "1.0 - 16.1 (7.0)"  "0.9 - 94.1 (12.0)"
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-3012 
"19P LOSS WILD-TYPE" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-3012 
"19P LOSS WILD-TYPE" 
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2822         TCGA-AB-2824         TCGA-AB-2825 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2826         TCGA-AB-2827         TCGA-AB-2828 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2829         TCGA-AB-2830         TCGA-AB-2831 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2832         TCGA-AB-2834         TCGA-AB-2835 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2836         TCGA-AB-2838         TCGA-AB-2839 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2840         TCGA-AB-2841         TCGA-AB-2844 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2845         TCGA-AB-2846         TCGA-AB-2848 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2849         TCGA-AB-2850         TCGA-AB-2851 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2853         TCGA-AB-2854         TCGA-AB-2855 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2856         TCGA-AB-2857         TCGA-AB-2858 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2859         TCGA-AB-2860         TCGA-AB-2862 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2863         TCGA-AB-2864         TCGA-AB-2865 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2866         TCGA-AB-2867         TCGA-AB-2868 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2869         TCGA-AB-2870         TCGA-AB-2871 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2872         TCGA-AB-2873         TCGA-AB-2874 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2875         TCGA-AB-2877         TCGA-AB-2878 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2879         TCGA-AB-2881         TCGA-AB-2882 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2883         TCGA-AB-2884         TCGA-AB-2885 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-AB-2886         TCGA-AB-2888         TCGA-AB-2889 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2892         TCGA-AB-2893         TCGA-AB-2894 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2895         TCGA-AB-2896         TCGA-AB-2897 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2898         TCGA-AB-2899         TCGA-AB-2900 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2901         TCGA-AB-2904         TCGA-AB-2905 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2906         TCGA-AB-2908         TCGA-AB-2909 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2911         TCGA-AB-2912         TCGA-AB-2913 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2914         TCGA-AB-2916         TCGA-AB-2917 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2919         TCGA-AB-2920         TCGA-AB-2923 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2924         TCGA-AB-2925         TCGA-AB-2926 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2927         TCGA-AB-2929         TCGA-AB-2933 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2934         TCGA-AB-2935         TCGA-AB-2936 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2937         TCGA-AB-2938         TCGA-AB-2939 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2942         TCGA-AB-2945         TCGA-AB-2947 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2948         TCGA-AB-2949         TCGA-AB-2950 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2952         TCGA-AB-2954         TCGA-AB-2955 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-AB-2956         TCGA-AB-2957         TCGA-AB-2959 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2963         TCGA-AB-2964         TCGA-AB-2965 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-AB-3012 
"19P LOSS WILD-TYPE" 
[1] "hr=" "3"  
D28V2, continuous
D28V3, binary
                    cls
clus                   0   1
  19P LOSS MUTATED     2   2
  19P LOSS WILD-TYPE  85 102
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED      2    2
  19P LOSS WILD-TYPE   85  102
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  FEMALE                2                 85
  MALE                  2                102

Clustering(29) Variable = 19Q LOSS MUTATION ANALYSIS
D29V1, survival
                    sevent
clus2                  0   1
  19Q LOSS MUTATED     0   3
  19Q LOSS WILD-TYPE  62 101
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 3                163 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 3                101 
$`19Q LOSS MUTATED`
TCGA-AB-2813 TCGA-AB-2885 TCGA-AB-2955 
        1.02         7.04        16.08 

$`19Q LOSS WILD-TYPE`
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 
       26.04        84.03        18.94        31.04         5.92        94.06 
TCGA-AB-2809 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2814 TCGA-AB-2815 
        2.04         1.02         7.99        12.03        26.04        26.99 
TCGA-AB-2816 TCGA-AB-2817 TCGA-AB-2818 TCGA-AB-2819 TCGA-AB-2821 TCGA-AB-2822 
        8.05         8.98         9.96        82.06        26.99        31.96 
TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2828 TCGA-AB-2829 
        0.99         6.94        24.03         8.98        75.09         8.98 
TCGA-AB-2830 TCGA-AB-2831 TCGA-AB-2832 TCGA-AB-2834 TCGA-AB-2835 TCGA-AB-2836 
        9.04        21.04        12.00         8.05        55.00        17.00 
TCGA-AB-2838 TCGA-AB-2839 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2844 TCGA-AB-2845 
       12.00        15.98         0.92        46.06         3.98         9.96 
TCGA-AB-2846 TCGA-AB-2848 TCGA-AB-2849 TCGA-AB-2850 TCGA-AB-2851 TCGA-AB-2853 
       46.09        14.96        72.99         1.97         7.96         2.89 
TCGA-AB-2854 TCGA-AB-2855 TCGA-AB-2856 TCGA-AB-2857 TCGA-AB-2858 TCGA-AB-2859 
       12.03         6.94         4.90        10.06        18.94         9.96 
TCGA-AB-2860 TCGA-AB-2862 TCGA-AB-2863 TCGA-AB-2864 TCGA-AB-2865 TCGA-AB-2866 
       14.01        47.01         1.02        18.97         2.01         5.00 
TCGA-AB-2867 TCGA-AB-2868 TCGA-AB-2869 TCGA-AB-2870 TCGA-AB-2871 TCGA-AB-2872 
        6.05         4.96         7.99         5.00         5.03        20.98 
TCGA-AB-2873 TCGA-AB-2874 TCGA-AB-2875 TCGA-AB-2877 TCGA-AB-2878 TCGA-AB-2879 
        8.98        13.02         6.97        20.98        12.00         8.05 
TCGA-AB-2881 TCGA-AB-2882 TCGA-AB-2883 TCGA-AB-2884 TCGA-AB-2886 TCGA-AB-2888 
       12.92        12.00        24.00        24.03         5.95        10.98 
TCGA-AB-2889 TCGA-AB-2892 TCGA-AB-2893 TCGA-AB-2894 TCGA-AB-2895 TCGA-AB-2896 
        9.99        30.97         6.97         5.92         5.03         7.00 
TCGA-AB-2897 TCGA-AB-2898 TCGA-AB-2899 TCGA-AB-2900 TCGA-AB-2901 TCGA-AB-2904 
        7.99        12.92        22.06         6.02         1.91        16.96 
TCGA-AB-2905 TCGA-AB-2906 TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2911 TCGA-AB-2912 
       52.93        18.97         1.02         0.99        38.99         9.01 
TCGA-AB-2913 TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2917 TCGA-AB-2919 TCGA-AB-2920 
       39.98        26.04        29.00        39.98         2.01        12.03 
TCGA-AB-2923 TCGA-AB-2924 TCGA-AB-2925 TCGA-AB-2926 TCGA-AB-2927 TCGA-AB-2929 
        1.02         2.96         7.96        14.99         2.93         4.04 
TCGA-AB-2933 TCGA-AB-2934 TCGA-AB-2935 TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2938 
        4.01         0.92         1.97         1.94         7.07         9.96 
TCGA-AB-2939 TCGA-AB-2942 TCGA-AB-2945 TCGA-AB-2947 TCGA-AB-2948 TCGA-AB-2949 
       14.96        21.07         7.99         1.02        19.07        22.98 
TCGA-AB-2950 TCGA-AB-2952 TCGA-AB-2954 TCGA-AB-2956 TCGA-AB-2957 TCGA-AB-2959 
       10.06         1.02        49.05         6.02        19.99        16.08 
TCGA-AB-2963 TCGA-AB-2964 TCGA-AB-2965 TCGA-AB-2966 TCGA-AB-2967 TCGA-AB-2968 
       53.95        41.98        11.01        28.08        34.03        15.06 
TCGA-AB-2969 TCGA-AB-2970 TCGA-AB-2971 TCGA-AB-2972 TCGA-AB-2973 TCGA-AB-2974 
       37.05        10.03        26.04         0.99        20.02         3.02 
TCGA-AB-2976 TCGA-AB-2977 TCGA-AB-2978 TCGA-AB-2980 TCGA-AB-2982 TCGA-AB-2983 
       30.08         0.99        22.98        22.98         4.90        11.01 
TCGA-AB-2984 TCGA-AB-2985 TCGA-AB-2986 TCGA-AB-2987 TCGA-AB-2988 TCGA-AB-2989 
       38.01         8.98         6.97         6.05         0.99        12.00 
TCGA-AB-2990 TCGA-AB-2991 TCGA-AB-2992 TCGA-AB-2993 TCGA-AB-2994 TCGA-AB-2995 
       15.02        60.03        56.09        25.02        59.11        50.99 
TCGA-AB-2996 TCGA-AB-2998 TCGA-AB-2999 TCGA-AB-3000 TCGA-AB-3001 TCGA-AB-3002 
       51.98         1.02        57.01        41.06        51.98        47.05 
TCGA-AB-3005 TCGA-AB-3006 TCGA-AB-3007 TCGA-AB-3008 TCGA-AB-3009 TCGA-AB-3011 
       69.01        15.91        51.98        27.02        18.94        61.97 
TCGA-AB-3012 
       62.04 

  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              1.02               0.92 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             16.08              94.06 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              7.04              12.03 
[1] "1.0 - 16.1 (7.0)"  "0.9 - 94.1 (12.0)"
        TCGA-AB-2803         TCGA-AB-2804         TCGA-AB-2805 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-AB-2806         TCGA-AB-2807         TCGA-AB-2808 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-AB-2809         TCGA-AB-2810         TCGA-AB-2811 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-AB-2812         TCGA-AB-2813         TCGA-AB-2814 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-AB-2815         TCGA-AB-2816         TCGA-AB-2817 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-AB-2818         TCGA-AB-2819         TCGA-AB-2821 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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        TCGA-AB-2966         TCGA-AB-2967         TCGA-AB-2968 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-AB-2969         TCGA-AB-2970         TCGA-AB-2971 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-AB-2972         TCGA-AB-2973         TCGA-AB-2974 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-AB-2976         TCGA-AB-2977         TCGA-AB-2978 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-AB-2980         TCGA-AB-2982         TCGA-AB-2983 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-AB-2984         TCGA-AB-2985         TCGA-AB-2986 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-AB-2987         TCGA-AB-2988         TCGA-AB-2989 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-AB-2990         TCGA-AB-2991         TCGA-AB-2992 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-AB-2993         TCGA-AB-2994         TCGA-AB-2995 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-AB-2996         TCGA-AB-2998         TCGA-AB-2999 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-AB-3000         TCGA-AB-3001         TCGA-AB-3002 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-AB-3005         TCGA-AB-3006         TCGA-AB-3007 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-AB-3008         TCGA-AB-3009         TCGA-AB-3011 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-AB-3012 
"19Q LOSS WILD-TYPE" 
[1] "hr=" "3"  
D29V2, continuous
D29V3, binary
                    cls
clus                   0   1
  19Q LOSS MUTATED     2   2
  19Q LOSS WILD-TYPE  85 102
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      2    2
  19Q LOSS WILD-TYPE   85  102
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  FEMALE                2                 85
  MALE                  2                102

Clustering(30) Variable = XQ LOSS MUTATION ANALYSIS
D30V1, survival
                   sevent
clus2                 0   1
  XQ LOSS MUTATED     1   3
  XQ LOSS WILD-TYPE  61 101
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                4               162 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                3               101 
$`XQ LOSS MUTATED`
TCGA-AB-2813 TCGA-AB-2857 TCGA-AB-2885 TCGA-AB-2939 
        1.02        10.06         7.04        14.96 

$`XQ LOSS WILD-TYPE`
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 
       26.04        84.03        18.94        31.04         5.92        94.06 
TCGA-AB-2809 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2814 TCGA-AB-2815 
        2.04         1.02         7.99        12.03        26.04        26.99 
TCGA-AB-2816 TCGA-AB-2817 TCGA-AB-2818 TCGA-AB-2819 TCGA-AB-2821 TCGA-AB-2822 
        8.05         8.98         9.96        82.06        26.99        31.96 
TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2828 TCGA-AB-2829 
        0.99         6.94        24.03         8.98        75.09         8.98 
TCGA-AB-2830 TCGA-AB-2831 TCGA-AB-2832 TCGA-AB-2834 TCGA-AB-2835 TCGA-AB-2836 
        9.04        21.04        12.00         8.05        55.00        17.00 
TCGA-AB-2838 TCGA-AB-2839 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2844 TCGA-AB-2845 
       12.00        15.98         0.92        46.06         3.98         9.96 
TCGA-AB-2846 TCGA-AB-2848 TCGA-AB-2849 TCGA-AB-2850 TCGA-AB-2851 TCGA-AB-2853 
       46.09        14.96        72.99         1.97         7.96         2.89 
TCGA-AB-2854 TCGA-AB-2855 TCGA-AB-2856 TCGA-AB-2858 TCGA-AB-2859 TCGA-AB-2860 
       12.03         6.94         4.90        18.94         9.96        14.01 
TCGA-AB-2862 TCGA-AB-2863 TCGA-AB-2864 TCGA-AB-2865 TCGA-AB-2866 TCGA-AB-2867 
       47.01         1.02        18.97         2.01         5.00         6.05 
TCGA-AB-2868 TCGA-AB-2869 TCGA-AB-2870 TCGA-AB-2871 TCGA-AB-2872 TCGA-AB-2873 
        4.96         7.99         5.00         5.03        20.98         8.98 
TCGA-AB-2874 TCGA-AB-2875 TCGA-AB-2877 TCGA-AB-2878 TCGA-AB-2879 TCGA-AB-2881 
       13.02         6.97        20.98        12.00         8.05        12.92 
TCGA-AB-2882 TCGA-AB-2883 TCGA-AB-2884 TCGA-AB-2886 TCGA-AB-2888 TCGA-AB-2889 
       12.00        24.00        24.03         5.95        10.98         9.99 
TCGA-AB-2892 TCGA-AB-2893 TCGA-AB-2894 TCGA-AB-2895 TCGA-AB-2896 TCGA-AB-2897 
       30.97         6.97         5.92         5.03         7.00         7.99 
TCGA-AB-2898 TCGA-AB-2899 TCGA-AB-2900 TCGA-AB-2901 TCGA-AB-2904 TCGA-AB-2905 
       12.92        22.06         6.02         1.91        16.96        52.93 
TCGA-AB-2906 TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2911 TCGA-AB-2912 TCGA-AB-2913 
       18.97         1.02         0.99        38.99         9.01        39.98 
TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2917 TCGA-AB-2919 TCGA-AB-2920 TCGA-AB-2923 
       26.04        29.00        39.98         2.01        12.03         1.02 
TCGA-AB-2924 TCGA-AB-2925 TCGA-AB-2926 TCGA-AB-2927 TCGA-AB-2929 TCGA-AB-2933 
        2.96         7.96        14.99         2.93         4.04         4.01 
TCGA-AB-2934 TCGA-AB-2935 TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2938 TCGA-AB-2942 
        0.92         1.97         1.94         7.07         9.96        21.07 
TCGA-AB-2945 TCGA-AB-2947 TCGA-AB-2948 TCGA-AB-2949 TCGA-AB-2950 TCGA-AB-2952 
        7.99         1.02        19.07        22.98        10.06         1.02 
TCGA-AB-2954 TCGA-AB-2955 TCGA-AB-2956 TCGA-AB-2957 TCGA-AB-2959 TCGA-AB-2963 
       49.05        16.08         6.02        19.99        16.08        53.95 
TCGA-AB-2964 TCGA-AB-2965 TCGA-AB-2966 TCGA-AB-2967 TCGA-AB-2968 TCGA-AB-2969 
       41.98        11.01        28.08        34.03        15.06        37.05 
TCGA-AB-2970 TCGA-AB-2971 TCGA-AB-2972 TCGA-AB-2973 TCGA-AB-2974 TCGA-AB-2976 
       10.03        26.04         0.99        20.02         3.02        30.08 
TCGA-AB-2977 TCGA-AB-2978 TCGA-AB-2980 TCGA-AB-2982 TCGA-AB-2983 TCGA-AB-2984 
        0.99        22.98        22.98         4.90        11.01        38.01 
TCGA-AB-2985 TCGA-AB-2986 TCGA-AB-2987 TCGA-AB-2988 TCGA-AB-2989 TCGA-AB-2990 
        8.98         6.97         6.05         0.99        12.00        15.02 
TCGA-AB-2991 TCGA-AB-2992 TCGA-AB-2993 TCGA-AB-2994 TCGA-AB-2995 TCGA-AB-2996 
       60.03        56.09        25.02        59.11        50.99        51.98 
TCGA-AB-2998 TCGA-AB-2999 TCGA-AB-3000 TCGA-AB-3001 TCGA-AB-3002 TCGA-AB-3005 
        1.02        57.01        41.06        51.98        47.05        69.01 
TCGA-AB-3006 TCGA-AB-3007 TCGA-AB-3008 TCGA-AB-3009 TCGA-AB-3011 TCGA-AB-3012 
       15.91        51.98        27.02        18.94        61.97        62.04 

  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
             1.02              0.92 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
            14.96             94.06 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
             8.55             12.03 
[1] "1.0 - 15.0 (8.6)"  "0.9 - 94.1 (12.0)"
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2803        TCGA-AB-2804        TCGA-AB-2805        TCGA-AB-2806 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2807        TCGA-AB-2808        TCGA-AB-2809        TCGA-AB-2810 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2811        TCGA-AB-2812        TCGA-AB-2813        TCGA-AB-2814 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2815        TCGA-AB-2816        TCGA-AB-2817        TCGA-AB-2818 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2819        TCGA-AB-2821        TCGA-AB-2822        TCGA-AB-2824 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2825        TCGA-AB-2826        TCGA-AB-2827        TCGA-AB-2828 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2829        TCGA-AB-2830        TCGA-AB-2831        TCGA-AB-2832 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2834        TCGA-AB-2835        TCGA-AB-2836        TCGA-AB-2838 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2839        TCGA-AB-2840        TCGA-AB-2841        TCGA-AB-2844 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2845        TCGA-AB-2846        TCGA-AB-2848        TCGA-AB-2849 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2850        TCGA-AB-2851        TCGA-AB-2853        TCGA-AB-2854 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2855        TCGA-AB-2856        TCGA-AB-2857        TCGA-AB-2858 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2859        TCGA-AB-2860        TCGA-AB-2862        TCGA-AB-2863 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2864        TCGA-AB-2865        TCGA-AB-2866        TCGA-AB-2867 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2868        TCGA-AB-2869        TCGA-AB-2870        TCGA-AB-2871 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2872        TCGA-AB-2873        TCGA-AB-2874        TCGA-AB-2875 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2877        TCGA-AB-2878        TCGA-AB-2879        TCGA-AB-2881 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2882        TCGA-AB-2883        TCGA-AB-2884        TCGA-AB-2885 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-AB-2886        TCGA-AB-2888        TCGA-AB-2889        TCGA-AB-2892 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2893        TCGA-AB-2894        TCGA-AB-2895        TCGA-AB-2896 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2897        TCGA-AB-2898        TCGA-AB-2899        TCGA-AB-2900 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2901        TCGA-AB-2904        TCGA-AB-2905        TCGA-AB-2906 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2908        TCGA-AB-2909        TCGA-AB-2911        TCGA-AB-2912 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2913        TCGA-AB-2914        TCGA-AB-2916        TCGA-AB-2917 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2919        TCGA-AB-2920        TCGA-AB-2923        TCGA-AB-2924 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2925        TCGA-AB-2926        TCGA-AB-2927        TCGA-AB-2929 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2933        TCGA-AB-2934        TCGA-AB-2935        TCGA-AB-2936 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2937        TCGA-AB-2938        TCGA-AB-2939        TCGA-AB-2942 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2945        TCGA-AB-2947        TCGA-AB-2948        TCGA-AB-2949 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2950        TCGA-AB-2952        TCGA-AB-2954        TCGA-AB-2955 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2956        TCGA-AB-2957        TCGA-AB-2959        TCGA-AB-2963 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2964        TCGA-AB-2965        TCGA-AB-2966        TCGA-AB-2967 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2968        TCGA-AB-2969        TCGA-AB-2970        TCGA-AB-2971 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2972        TCGA-AB-2973        TCGA-AB-2974        TCGA-AB-2976 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2977        TCGA-AB-2978        TCGA-AB-2980        TCGA-AB-2982 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2983        TCGA-AB-2984        TCGA-AB-2985        TCGA-AB-2986 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2987        TCGA-AB-2988        TCGA-AB-2989        TCGA-AB-2990 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2991        TCGA-AB-2992        TCGA-AB-2993        TCGA-AB-2994 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-2995        TCGA-AB-2996        TCGA-AB-2998        TCGA-AB-2999 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-3000        TCGA-AB-3001        TCGA-AB-3002        TCGA-AB-3005 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-3006        TCGA-AB-3007        TCGA-AB-3008        TCGA-AB-3009 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-AB-3011        TCGA-AB-3012 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
[1] "hr=" "2.2"
D30V2, continuous
D30V3, binary
                   cls
clus                 0  1
  XQ LOSS MUTATED    0  5
  XQ LOSS WILD-TYPE 87 99
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED      0    5
  XQ LOSS WILD-TYPE   87   99
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  FEMALE               0                87
  MALE                 5                99
> q(save="no")
