
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LIHC-TP/4428361/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/LIHC-TP/4397111/LIHC-TP.clin.merged.picked.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=LIHC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=LIHC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/LIHC-TP/4397111/LIHC-TP.clin.merged.picked.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LIHC-TP/4428361/transformed.cor.cli.txt"

nPatients in clinical file=127, in cluster file=139, common to both=117
[1]  53 117
[1] "AMP PEAK  1(1P22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                           31                            86 
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                           31                            86 
[1] "AMP PEAK  2(1Q22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                         86                          31 
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                         86                          31 
[1] "AMP PEAK  3(1Q42.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                           79                            38 
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                           79                            38 
[1] "AMP PEAK  4(2P24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE 
                           26                            91 
  AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE 
                           26                            91 
[1] "AMP PEAK  5(2Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE 
                           27                            90 
  AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE 
                           27                            90 
[1] "AMP PEAK  6(3Q26.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE 
                            22                             95 
  AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE 
                            22                             95 
[1] "AMP PEAK  7(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                            58                             59 
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                            58                             59 
[1] "AMP PEAK  8(5Q35.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(5Q35.3) MUTATED AMP PEAK  8(5Q35.3) WILD-TYPE 
                           43                            74 
  AMP PEAK  8(5Q35.3) MUTATED AMP PEAK  8(5Q35.3) WILD-TYPE 
                           43                            74 
[1] "AMP PEAK  9(6P25.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(6P25.2) MUTATED AMP PEAK  9(6P25.2) WILD-TYPE 
                           49                            68 
  AMP PEAK  9(6P25.2) MUTATED AMP PEAK  9(6P25.2) WILD-TYPE 
                           49                            68 
[1] "AMP PEAK 10(6P21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(6P21.1) MUTATED AMP PEAK 10(6P21.1) WILD-TYPE 
                           49                            68 
  AMP PEAK 10(6P21.1) MUTATED AMP PEAK 10(6P21.1) WILD-TYPE 
                           49                            68 
[1] "AMP PEAK 11(7Q21.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE 
                           45                            72 
  AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE 
                           45                            72 
[1] "AMP PEAK 12(8Q13.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(8Q13.1) MUTATED AMP PEAK 12(8Q13.1) WILD-TYPE 
                           61                            56 
  AMP PEAK 12(8Q13.1) MUTATED AMP PEAK 12(8Q13.1) WILD-TYPE 
                           61                            56 
[1] "AMP PEAK 13(8Q24.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(8Q24.13) MUTATED AMP PEAK 13(8Q24.13) WILD-TYPE 
                            70                             47 
  AMP PEAK 13(8Q24.13) MUTATED AMP PEAK 13(8Q24.13) WILD-TYPE 
                            70                             47 
[1] "AMP PEAK 14(9Q34.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(9Q34.2) MUTATED AMP PEAK 14(9Q34.2) WILD-TYPE 
                           15                           102 
  AMP PEAK 14(9Q34.2) MUTATED AMP PEAK 14(9Q34.2) WILD-TYPE 
                           15                           102 
[1] "AMP PEAK 15(10P15.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(10P15.1) MUTATED AMP PEAK 15(10P15.1) WILD-TYPE 
                            24                             93 
  AMP PEAK 15(10P15.1) MUTATED AMP PEAK 15(10P15.1) WILD-TYPE 
                            24                             93 
[1] "AMP PEAK 16(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                            21                             96 
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                            21                             96 
[1] "AMP PEAK 17(12Q23.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(12Q23.1) MUTATED AMP PEAK 17(12Q23.1) WILD-TYPE 
                            22                             95 
  AMP PEAK 17(12Q23.1) MUTATED AMP PEAK 17(12Q23.1) WILD-TYPE 
                            22                             95 
[1] "AMP PEAK 18(13Q32.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(13Q32.3) MUTATED AMP PEAK 18(13Q32.3) WILD-TYPE 
                            22                             95 
  AMP PEAK 18(13Q32.3) MUTATED AMP PEAK 18(13Q32.3) WILD-TYPE 
                            22                             95 
[1] "AMP PEAK 19(15Q26.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(15Q26.3) MUTATED AMP PEAK 19(15Q26.3) WILD-TYPE 
                            19                             98 
  AMP PEAK 19(15Q26.3) MUTATED AMP PEAK 19(15Q26.3) WILD-TYPE 
                            19                             98 
[1] "AMP PEAK 20(17P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(17P11.2) MUTATED AMP PEAK 20(17P11.2) WILD-TYPE 
                            18                             99 
  AMP PEAK 20(17P11.2) MUTATED AMP PEAK 20(17P11.2) WILD-TYPE 
                            18                             99 
[1] "AMP PEAK 21(17Q23.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(17Q23.1) MUTATED AMP PEAK 21(17Q23.1) WILD-TYPE 
                            50                             67 
  AMP PEAK 21(17Q23.1) MUTATED AMP PEAK 21(17Q23.1) WILD-TYPE 
                            50                             67 
[1] "AMP PEAK 22(17Q25.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(17Q25.3) MUTATED AMP PEAK 22(17Q25.3) WILD-TYPE 
                            54                             63 
  AMP PEAK 22(17Q25.3) MUTATED AMP PEAK 22(17Q25.3) WILD-TYPE 
                            54                             63 
[1] "AMP PEAK 23(19P13.12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE 
                             32                              85 
  AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE 
                             32                              85 
[1] "AMP PEAK 24(19Q13.11) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(19Q13.11) MUTATED AMP PEAK 24(19Q13.11) WILD-TYPE 
                             38                              79 
  AMP PEAK 24(19Q13.11) MUTATED AMP PEAK 24(19Q13.11) WILD-TYPE 
                             38                              79 
[1] "AMP PEAK 25(20Q13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(20Q13.33) MUTATED AMP PEAK 25(20Q13.33) WILD-TYPE 
                             43                              74 
  AMP PEAK 25(20Q13.33) MUTATED AMP PEAK 25(20Q13.33) WILD-TYPE 
                             43                              74 
[1] "DEL PEAK  1(1P36.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            54                             63 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            54                             63 
[1] "DEL PEAK  2(1P35.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P35.2) MUTATED DEL PEAK  2(1P35.2) WILD-TYPE 
                           44                            73 
  DEL PEAK  2(1P35.2) MUTATED DEL PEAK  2(1P35.2) WILD-TYPE 
                           44                            73 
[1] "DEL PEAK  3(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           13                           104 
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           13                           104 
[1] "DEL PEAK  4(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           23                            94 
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           23                            94 
[1] "DEL PEAK  5(3P13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE 
                         20                          97 
  DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE 
                         20                          97 
[1] "DEL PEAK  6(4P16.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4P16.1) MUTATED DEL PEAK  6(4P16.1) WILD-TYPE 
                           22                            95 
  DEL PEAK  6(4P16.1) MUTATED DEL PEAK  6(4P16.1) WILD-TYPE 
                           22                            95 
[1] "DEL PEAK  7(4Q25) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(4Q25) MUTATED DEL PEAK  7(4Q25) WILD-TYPE 
                         54                          63 
  DEL PEAK  7(4Q25) MUTATED DEL PEAK  7(4Q25) WILD-TYPE 
                         54                          63 
[1] "DEL PEAK  8(4Q35.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE 
                           49                            68 
  DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE 
                           49                            68 
[1] "DEL PEAK  9(5Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(5Q23.1) MUTATED DEL PEAK  9(5Q23.1) WILD-TYPE 
                           16                           101 
  DEL PEAK  9(5Q23.1) MUTATED DEL PEAK  9(5Q23.1) WILD-TYPE 
                           16                           101 
[1] "DEL PEAK 10(6Q16.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6Q16.3) MUTATED DEL PEAK 10(6Q16.3) WILD-TYPE 
                           42                            75 
  DEL PEAK 10(6Q16.3) MUTATED DEL PEAK 10(6Q16.3) WILD-TYPE 
                           42                            75 
[1] "DEL PEAK 11(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                         47                          70 
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                         47                          70 
[1] "DEL PEAK 12(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE 
                           75                            42 
  DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE 
                           75                            42 
[1] "DEL PEAK 13(8P11.22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(8P11.22) MUTATED DEL PEAK 13(8P11.22) WILD-TYPE 
                            60                             57 
  DEL PEAK 13(8P11.22) MUTATED DEL PEAK 13(8P11.22) WILD-TYPE 
                            60                             57 
[1] "DEL PEAK 14(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE 
                           45                            72 
  DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE 
                           45                            72 
[1] "DEL PEAK 15(9Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(9Q34.3) MUTATED DEL PEAK 15(9Q34.3) WILD-TYPE 
                           43                            74 
  DEL PEAK 15(9Q34.3) MUTATED DEL PEAK 15(9Q34.3) WILD-TYPE 
                           43                            74 
[1] "DEL PEAK 16(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE 
                             36                              81 
  DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE 
                             36                              81 
[1] "DEL PEAK 17(11Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(11Q23.3) MUTATED DEL PEAK 17(11Q23.3) WILD-TYPE 
                            24                             93 
  DEL PEAK 17(11Q23.3) MUTATED DEL PEAK 17(11Q23.3) WILD-TYPE 
                            24                             93 
[1] "DEL PEAK 18(12P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(12P12.1) MUTATED DEL PEAK 18(12P12.1) WILD-TYPE 
                            26                             91 
  DEL PEAK 18(12P12.1) MUTATED DEL PEAK 18(12P12.1) WILD-TYPE 
                            26                             91 
[1] "DEL PEAK 19(12Q24.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE 
                             20                              97 
  DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE 
                             20                              97 
[1] "DEL PEAK 20(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE 
                            54                             63 
  DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE 
                            54                             63 
[1] "DEL PEAK 21(13Q22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(13Q22.2) MUTATED DEL PEAK 21(13Q22.2) WILD-TYPE 
                            43                             74 
  DEL PEAK 21(13Q22.2) MUTATED DEL PEAK 21(13Q22.2) WILD-TYPE 
                            43                             74 
[1] "DEL PEAK 22(14Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE 
                            41                             76 
  DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE 
                            41                             76 
[1] "DEL PEAK 23(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(16Q23.1) MUTATED DEL PEAK 23(16Q23.1) WILD-TYPE 
                            50                             67 
  DEL PEAK 23(16Q23.1) MUTATED DEL PEAK 23(16Q23.1) WILD-TYPE 
                            50                             67 
[1] "DEL PEAK 24(17P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(17P13.3) MUTATED DEL PEAK 24(17P13.3) WILD-TYPE 
                            64                             53 
  DEL PEAK 24(17P13.3) MUTATED DEL PEAK 24(17P13.3) WILD-TYPE 
                            64                             53 
[1] "DEL PEAK 25(17P11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(17P11.2) MUTATED DEL PEAK 25(17P11.2) WILD-TYPE 
                            64                             53 
  DEL PEAK 25(17P11.2) MUTATED DEL PEAK 25(17P11.2) WILD-TYPE 
                            64                             53 
[1] "DEL PEAK 26(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(18Q21.2) MUTATED DEL PEAK 26(18Q21.2) WILD-TYPE 
                            24                             93 
  DEL PEAK 26(18Q21.2) MUTATED DEL PEAK 26(18Q21.2) WILD-TYPE 
                            24                             93 
[1] "DEL PEAK 27(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(19P13.3) MUTATED DEL PEAK 27(19P13.3) WILD-TYPE 
                            27                             90 
  DEL PEAK 27(19P13.3) MUTATED DEL PEAK 27(19P13.3) WILD-TYPE 
                            27                             90 
[1] "DEL PEAK 28(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE 
                             30                              87 
  DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE 
                             30                              87 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "DAYSTOLASTKNOWNALIVE"                  
[14] "RADIATIONTHERAPY"                      
[15] "HISTOLOGICALTYPE"                      
[16] "RADIATIONS.RADIATION.REGIMENINDICATION"
[17] "COMPLETENESS.OF.RESECTION"             
[18] "BATCHNUMBER"                           

Input Data has 18 rows and 117 columns.

[1] "Batch" "18"   
[1] "Last Follow UP"
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T 
          NA          849           NA           NA           NA           NA 
TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 
          NA           NA           NA           NA           NA           NA 
TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A5W4 
          NA         1351          420            8          498          289 
TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-5264 
           2           NA           NA           NA           NA           NA 
TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 
          NA            3            2            3            4         2425 
TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A 
          NA           NA           NA         3436           NA           79 
TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB 
          NA          662           NA           NA         2414         2017 
TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EH TCGA-DD-A1EI 
         601         2301          203           NA         1495          183 
TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A39Z 
         887           NA           NA           NA           NA           NA 
TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 
          NA           NA           NA           NA           NA           NA 
TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4ND 
          NA           NA           NA           NA         1008         2232 
TCGA-DD-A4NE TCGA-DD-A4NF TCGA-DD-A4NG TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ 
          NA          428          454          433          328          458 
TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A4NQ 
          NA         1711           NA         1869         2849           NA 
TCGA-ED-A459 TCGA-ED-A5KG TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB 
           7            6          330          236          357           60 
TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A23B 
          19           97           13           NA           NA          987 
TCGA-FV-A2QQ TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3I1 TCGA-FV-A3R2 TCGA-FV-A3R3 
          NA           NA            6           NA           NA            4 
TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25T 
           1           10         1836           12           37         1552 
TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z 
        1636          860          934         1779           NA          655 
TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SJ 
         673          780          179          594          585          364 
TCGA-G3-A5SK TCGA-G3-A5SL TCGA-G3-A5SM 
         302          243          133 
Variable 1:'AGE':	nDistinctValues=48,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=52,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=62,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=17,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 14:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'HISTOLOGICAL.TYPE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 16:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 17:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 18:'BATCH.NUMBER':	nDistinctValues=10,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                       "NEOPLASM.DISEASESTAGE"    
[3] "PATHOLOGY.T.STAGE"         "PATHOLOGY.N.STAGE"        
[5] "PATHOLOGY.M.STAGE"         "GENDER"                   
[7] "COMPLETENESS.OF.RESECTION"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 117 columns, 1 survival variables, and 7 non-survival variables.
AGE, nv=48, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=9, binary=FALSE, numeric=FALSE
PATHOLOGY.T.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
T1 T2 T3 T4 
48 28 34  6 
[1] "table(vv)"
vv
T1 T2 T3 T4 
48 28 34  6 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
T1 T2 T3 T4 
48 28 34  6 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


T1 T2 T3 T4 
48 28 34  6 
PATHOLOGY.N.STAGE, nv=2, binary=FALSE, numeric=TRUE
PATHOLOGY.M.STAGE, nv=3, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P22.3) MUTATION ANALYSIS
D1V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  1(1P22.3) MUTATED   16 15
  AMP PEAK  1(1P22.3) WILD-TYPE 45 38
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                           31                            83 
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                           15                            38 
$`AMP PEAK  1(1P22.3) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A216 TCGA-BC-A217 
       37.32        46.78        27.52         2.99        44.42        13.81 
TCGA-CC-5261 TCGA-CC-5263 TCGA-CC-A3MB TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A119 
        3.02         4.24         0.10        79.73        37.74         7.33 
TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1EH TCGA-DD-A1EJ TCGA-DD-A39X TCGA-DD-A39Y 
        2.60        21.76        49.15        29.16        55.66         5.59 
TCGA-DD-A3A1 TCGA-DD-A3A7 TCGA-DD-A3A9 TCGA-DD-A4NJ TCGA-ED-A459 TCGA-EP-A2KB 
        7.66        13.78        30.58        15.06         0.23         1.97 
TCGA-FV-A496 TCGA-FV-A4ZP TCGA-G3-A25S TCGA-G3-A25W TCGA-G3-A3CK TCGA-G3-A5SJ 
        0.33        60.36         1.22        30.71        19.23        11.97 
TCGA-G3-A5SK 
        9.93 

$`AMP PEAK  1(1P22.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10X TCGA-BC-A10Y 
       48.99        27.91        10.13        27.52        25.32        23.34 
TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A5W4 
        1.12        69.57         5.03         0.26        16.37         9.50 
TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5262 TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MA 
        0.07         2.86         3.39         3.32         0.10         0.07 
TCGA-CC-A3MC TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A11B TCGA-DD-A11D 
        0.13        83.57        53.29       112.96         0.46        51.25 
TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE 
       90.67        79.36        66.31        19.76        75.65         6.67 
TCGA-DD-A1EF TCGA-DD-A1EI TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39Z TCGA-DD-A3A0 
       12.95         6.02        13.64        21.14        19.73        25.81 
TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A8 
       70.06        17.59        20.12       102.74       107.11         0.36 
TCGA-DD-A4NA TCGA-DD-A4ND TCGA-DD-A4NE TCGA-DD-A4NF TCGA-DD-A4NG TCGA-DD-A4NH 
       33.14        73.38        21.67        14.07        14.93        14.24 
TCGA-DD-A4NI TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NP 
       10.78        39.75        56.25        29.56        61.45        93.67 
TCGA-DD-A4NQ TCGA-ED-A5KG TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KC 
       12.26         0.20        10.85         7.76        11.74         0.62 
TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR 
        3.19         0.43        23.01        14.40        32.45        19.07 
TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A4ZQ TCGA-G3-A25T 
        0.20         6.35         0.13         0.03         0.39        51.02 
TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG 
       53.79        28.27        58.49        14.86        21.53        22.13 
TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A5SL TCGA-G3-A5SM 
       25.64         5.88        19.53         7.99         4.37 

  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                         0.10                          0.03 
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                        79.73                        112.96 
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                        13.81                         17.59 
[1] "0.1 - 79.7 (13.8)"  "0.0 - 113.0 (17.6)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
[1] "hr=" "1.3"
D1V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK  1(1P22.3) MUTATED        10        6         1          5
  AMP PEAK  1(1P22.3) WILD-TYPE      35       19         1         20
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK  1(1P22.3) MUTATED            2          1        1         0
  AMP PEAK  1(1P22.3) WILD-TYPE          1          3        0         1
                               vv
clus                            STAGE IVB
  AMP PEAK  1(1P22.3) MUTATED           1
  AMP PEAK  1(1P22.3) WILD-TYPE         0
D1V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  1(1P22.3) MUTATED   11  8 10  2
  AMP PEAK  1(1P22.3) WILD-TYPE 37 20 24  4
D1V4, multiclass
    clus
vv   AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  T1                          11                            37
  T2                           8                            20
  T3                          10                            24
  T4                           2                             4
D1V5, binary
                               cls
clus                             0  1
  AMP PEAK  1(1P22.3) MUTATED   16  1
  AMP PEAK  1(1P22.3) WILD-TYPE 58  2
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P22.3) MUTATED     16    1
  AMP PEAK  1(1P22.3) WILD-TYPE   58    2
   clus
vv  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  0                          16                            58
  1                           1                             2
                               vv
clus                            M0 M1 MX
  AMP PEAK  1(1P22.3) MUTATED   24  2  5
  AMP PEAK  1(1P22.3) WILD-TYPE 66  0 20
D1V6, multiclass
    clus
vv   AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  M0                          24                            66
  M1                           2                             0
  MX                           5                            20
D1V7, binary
                               cls
clus                             0  1
  AMP PEAK  1(1P22.3) MUTATED   11 20
  AMP PEAK  1(1P22.3) WILD-TYPE 33 53
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P22.3) MUTATED     11   20
  AMP PEAK  1(1P22.3) WILD-TYPE   33   53
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  FEMALE                          11                            33
  MALE                            20                            53
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  1(1P22.3) MUTATED   22  5  1  3
  AMP PEAK  1(1P22.3) WILD-TYPE 71  5  0  5
D1V8, multiclass
    clus
vv   AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  R0                          22                            71
  R1                           5                             5
  R2                           1                             0
  RX                           3                             5

Clustering(2) Variable = AMP PEAK  2(1Q22) MUTATION ANALYSIS
D2V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  2(1Q22) MUTATED   43 40
  AMP PEAK  2(1Q22) WILD-TYPE 18 13
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                         83                          31 
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                         40                          13 
$`AMP PEAK  2(1Q22) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10Y 
       37.32        10.13        27.52        27.52         2.99        23.34 
TCGA-BC-A10Z TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KG TCGA-BC-A5W4 
        1.12         5.03        44.42        13.81        16.37         9.50 
TCGA-CC-5258 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A1HT TCGA-CC-A3MA 
        0.07         3.02         3.39         4.24         3.32         0.07 
TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A118 
        0.10         0.13        79.73        37.74        83.57       112.96 
TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 
        7.33         2.60         0.46        21.76        51.25        90.67 
TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EH TCGA-DD-A1EJ 
       79.36        66.31         6.67        12.95        49.15        29.16 
TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A0 
       13.64        21.14        55.66         5.59        19.73        25.81 
TCGA-DD-A3A1 TCGA-DD-A3A3 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NE 
        7.66        17.59        13.78         0.36        30.58        21.67 
TCGA-DD-A4NF TCGA-DD-A4NG TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NK 
       14.07        14.93        14.24        10.78        15.06        39.75 
TCGA-DD-A4NN TCGA-DD-A4NO TCGA-ED-A459 TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA 
       29.56        61.45         0.23        10.85         7.76        11.74 
TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A23B 
        1.97         0.62         3.19         0.43        14.40        32.45 
TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZP TCGA-G3-A25S 
       19.07         0.13         0.03         0.33        60.36         1.22 
TCGA-G3-A25U TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG 
       53.79        30.71        58.49        14.86        21.53        22.13 
TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SK TCGA-G3-A5SL TCGA-G3-A5SM 
       19.53        19.23         9.93         7.99         4.37 

$`AMP PEAK  2(1Q22) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10X TCGA-BC-A110 TCGA-BC-A3KF 
       48.99        27.91        46.78        25.32        69.57         0.26 
TCGA-CC-5260 TCGA-CC-A3M9 TCGA-DD-A116 TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EI 
        2.86         0.10        53.29        19.76        75.65         6.02 
TCGA-DD-A3A2 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A4NA TCGA-DD-A4ND 
       70.06        20.12       102.74       107.11        33.14        73.38 
TCGA-DD-A4NL TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-ED-A5KG TCGA-ES-A2HS TCGA-FV-A3I0 
       56.25        93.67        12.26         0.20        23.01         0.20 
TCGA-FV-A3R2 TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25V TCGA-G3-A3CH TCGA-G3-A3CI 
        6.35         0.39        51.02        28.27        25.64         5.88 
TCGA-G3-A5SJ 
       11.97 

  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                       0.03                        0.10 
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                     112.96                      107.11 
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                      14.24                       25.64 
[1] "0.0 - 113.0 (14.2)" "0.1 - 107.1 (25.6)"
                 TCGA-BC-4072                  TCGA-BC-4073 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-CC-5258                  TCGA-CC-5260 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-CC-5261                  TCGA-CC-5262 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A113                  TCGA-DD-A114 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A115                  TCGA-DD-A116 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EH 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1EI                  TCGA-DD-A1EJ 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A4ND                  TCGA-DD-A4NE 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NG 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A4NH                  TCGA-DD-A4NI 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A4NJ                  TCGA-DD-A4NK 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A4NL                  TCGA-DD-A4NN 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A4NO                  TCGA-DD-A4NP 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A4NQ                  TCGA-ED-A459 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-ED-A5KG                  TCGA-EP-A12J 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-FV-A3I0                  TCGA-FV-A3R2 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-FV-A3R3                  TCGA-FV-A495 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-FV-A496                  TCGA-FV-A4ZP 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-FV-A4ZQ                  TCGA-G3-A25S 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A25T                  TCGA-G3-A25U 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A25V                  TCGA-G3-A25W 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A25X                  TCGA-G3-A25Y 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A25Z                  TCGA-G3-A3CG 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A3CH                  TCGA-G3-A3CI 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-G3-A3CJ                  TCGA-G3-A3CK 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SK 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A5SL                  TCGA-G3-A5SM 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-CC-5258                  TCGA-CC-5260 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-CC-5261                  TCGA-CC-5262 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A113                  TCGA-DD-A114 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A115                  TCGA-DD-A116 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EH 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1EI                  TCGA-DD-A1EJ 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A4ND                  TCGA-DD-A4NE 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NG 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A4NH                  TCGA-DD-A4NI 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A4NJ                  TCGA-DD-A4NK 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A4NL                  TCGA-DD-A4NN 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A4NO                  TCGA-DD-A4NP 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A4NQ                  TCGA-ED-A459 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-ED-A5KG                  TCGA-EP-A12J 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-FV-A3I0                  TCGA-FV-A3R2 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-FV-A3R3                  TCGA-FV-A495 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-FV-A496                  TCGA-FV-A4ZP 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-FV-A4ZQ                  TCGA-G3-A25S 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A25T                  TCGA-G3-A25U 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A25V                  TCGA-G3-A25W 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A25X                  TCGA-G3-A25Y 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A25Z                  TCGA-G3-A3CG 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A3CH                  TCGA-G3-A3CI 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-G3-A3CJ                  TCGA-G3-A3CK 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SK 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A5SL                  TCGA-G3-A5SM 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-CC-5258                  TCGA-CC-5260 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-CC-5261                  TCGA-CC-5262 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A113                  TCGA-DD-A114 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A115                  TCGA-DD-A116 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EH 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1EI                  TCGA-DD-A1EJ 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A4ND                  TCGA-DD-A4NE 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NG 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A4NH                  TCGA-DD-A4NI 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A4NJ                  TCGA-DD-A4NK 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A4NL                  TCGA-DD-A4NN 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A4NO                  TCGA-DD-A4NP 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-DD-A4NQ                  TCGA-ED-A459 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-ED-A5KG                  TCGA-EP-A12J 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-FV-A3I0                  TCGA-FV-A3R2 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-FV-A3R3                  TCGA-FV-A495 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-FV-A496                  TCGA-FV-A4ZP 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-FV-A4ZQ                  TCGA-G3-A25S 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A25T                  TCGA-G3-A25U 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A25V                  TCGA-G3-A25W 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A25X                  TCGA-G3-A25Y 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A25Z                  TCGA-G3-A3CG 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A3CH                  TCGA-G3-A3CI 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-G3-A3CJ                  TCGA-G3-A3CK 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SK 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A5SL                  TCGA-G3-A5SM 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
[1] "hr=" "1.8"
D2V2, continuous
                             vv
clus                          STAGE I STAGE II STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK  2(1Q22) MUTATED        31       21         1         18          3
  AMP PEAK  2(1Q22) WILD-TYPE      14        4         1          7          0
                             vv
clus                          STAGE IIIC STAGE IV STAGE IVA STAGE IVB
  AMP PEAK  2(1Q22) MUTATED            2        1         1         1
  AMP PEAK  2(1Q22) WILD-TYPE          2        0         0         0
D2V3, multiclass
                             vv
clus                          T1 T2 T3 T4
  AMP PEAK  2(1Q22) MUTATED   33 23 25  5
  AMP PEAK  2(1Q22) WILD-TYPE 15  5  9  1
D2V4, multiclass
    clus
vv   AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  T1                        33                          15
  T2                        23                           5
  T3                        25                           9
  T4                         5                           1
D2V5, binary
                             cls
clus                           0  1
  AMP PEAK  2(1Q22) MUTATED   52  2
  AMP PEAK  2(1Q22) WILD-TYPE 22  1
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1Q22) MUTATED     52    2
  AMP PEAK  2(1Q22) WILD-TYPE   22    1
   clus
vv  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  0                        52                          22
  1                         2                           1
                             vv
clus                          M0 M1 MX
  AMP PEAK  2(1Q22) MUTATED   65  2 19
  AMP PEAK  2(1Q22) WILD-TYPE 25  0  6
D2V6, multiclass
    clus
vv   AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  M0                        65                          25
  M1                         2                           0
  MX                        19                           6
D2V7, binary
                             cls
clus                           0  1
  AMP PEAK  2(1Q22) MUTATED   30 56
  AMP PEAK  2(1Q22) WILD-TYPE 14 17
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1Q22) MUTATED     30   56
  AMP PEAK  2(1Q22) WILD-TYPE   14   17
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  FEMALE                        30                          14
  MALE                          56                          17
                             vv
clus                          R0 R1 R2 RX
  AMP PEAK  2(1Q22) MUTATED   65  8  1  7
  AMP PEAK  2(1Q22) WILD-TYPE 28  2  0  1
D2V8, multiclass
    clus
vv   AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  R0                        65                          28
  R1                         8                           2
  R2                         1                           0
  RX                         7                           1

Clustering(3) Variable = AMP PEAK  3(1Q42.3) MUTATION ANALYSIS
D3V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  3(1Q42.3) MUTATED   40 36
  AMP PEAK  3(1Q42.3) WILD-TYPE 21 17
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                           76                            38 
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                           36                            17 
$`AMP PEAK  3(1Q42.3) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10Y TCGA-BC-A112 
       37.32        10.13        27.52        27.52        23.34         5.03 
TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-CC-5261 TCGA-CC-5262 
       44.42        13.81        16.37         9.50         3.02         3.39 
TCGA-CC-5263 TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 
        4.24         0.10         0.07         0.13        79.73        37.74 
TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1E9 
      112.96         7.33         2.60         0.46        51.25        90.67 
TCGA-DD-A1EA TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EH TCGA-DD-A1EJ TCGA-DD-A1EL 
       79.36         6.67        12.95        49.15        29.16        13.64 
TCGA-DD-A39V TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A3 
       21.14         5.59        19.73        25.81         7.66        17.59 
TCGA-DD-A3A5 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4NF 
      102.74        13.78         0.36        30.58        33.14        14.07 
TCGA-DD-A4NG TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NN 
       14.93        14.24        10.78        15.06        39.75        29.56 
TCGA-DD-A4NO TCGA-DD-A4NQ TCGA-ED-A459 TCGA-ED-A5KG TCGA-EP-A12J TCGA-EP-A26S 
       61.45        12.26         0.23         0.20        10.85         7.76 
TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT 
       11.74         1.97         0.62         3.19         0.43        14.40 
TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A496 TCGA-G3-A25S 
       32.45        19.07         0.13         0.03         0.33         1.22 
TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CJ 
       30.71        58.49        14.86        21.53        22.13        19.53 
TCGA-G3-A3CK TCGA-G3-A5SK TCGA-G3-A5SL TCGA-G3-A5SM 
       19.23         9.93         7.99         4.37 

$`AMP PEAK  3(1Q42.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Z 
       48.99        27.91        46.78         2.99        25.32         1.12 
TCGA-BC-A110 TCGA-BC-A3KF TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-A1HT TCGA-CC-A3MB 
       69.57         0.26         0.07         2.86         3.32         0.10 
TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A11C TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED 
       83.57        53.29        21.76        66.31        19.76        75.65 
TCGA-DD-A1EI TCGA-DD-A39X TCGA-DD-A3A2 TCGA-DD-A3A4 TCGA-DD-A3A6 TCGA-DD-A4ND 
        6.02        55.66        70.06        20.12       107.11        73.38 
TCGA-DD-A4NE TCGA-DD-A4NL TCGA-DD-A4NP TCGA-ES-A2HS TCGA-FV-A3I0 TCGA-FV-A3R2 
       21.67        56.25        93.67        23.01         0.20         6.35 
TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A3CH 
       60.36         0.39        51.02        53.79        28.27        25.64 
TCGA-G3-A3CI TCGA-G3-A5SJ 
        5.88        11.97 

  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                         0.03                          0.07 
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                       112.96                        107.11 
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                        13.94                         25.48 
[1] "0.0 - 113.0 (13.9)" "0.1 - 107.1 (25.5)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
[1] "hr=" "1.7"
D3V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK  3(1Q42.3) MUTATED        26       22         2         14
  AMP PEAK  3(1Q42.3) WILD-TYPE      19        3         0         11
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK  3(1Q42.3) MUTATED            3          3        1         1
  AMP PEAK  3(1Q42.3) WILD-TYPE          0          1        0         0
                               vv
clus                            STAGE IVB
  AMP PEAK  3(1Q42.3) MUTATED           1
  AMP PEAK  3(1Q42.3) WILD-TYPE         0
D3V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  3(1Q42.3) MUTATED   28 25 22  4
  AMP PEAK  3(1Q42.3) WILD-TYPE 20  3 12  2
D3V4, multiclass
    clus
vv   AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  T1                          28                            20
  T2                          25                             3
  T3                          22                            12
  T4                           4                             2
D3V5, binary
                               cls
clus                             0  1
  AMP PEAK  3(1Q42.3) MUTATED   47  3
  AMP PEAK  3(1Q42.3) WILD-TYPE 27  0
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1Q42.3) MUTATED     47    3
  AMP PEAK  3(1Q42.3) WILD-TYPE   27    0
   clus
vv  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  0                          47                            27
  1                           3                             0
                               vv
clus                            M0 M1 MX
  AMP PEAK  3(1Q42.3) MUTATED   60  2 17
  AMP PEAK  3(1Q42.3) WILD-TYPE 30  0  8
D3V6, multiclass
    clus
vv   AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  M0                          60                            30
  M1                           2                             0
  MX                          17                             8
D3V7, binary
                               cls
clus                             0  1
  AMP PEAK  3(1Q42.3) MUTATED   28 51
  AMP PEAK  3(1Q42.3) WILD-TYPE 16 22
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1Q42.3) MUTATED     28   51
  AMP PEAK  3(1Q42.3) WILD-TYPE   16   22
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  FEMALE                          28                            16
  MALE                            51                            22
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  3(1Q42.3) MUTATED   63  6  1  5
  AMP PEAK  3(1Q42.3) WILD-TYPE 30  4  0  3
D3V8, multiclass
    clus
vv   AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  R0                          63                            30
  R1                           6                             4
  R2                           1                             0
  RX                           5                             3

Clustering(4) Variable = AMP PEAK  4(2P24.1) MUTATION ANALYSIS
D4V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  4(2P24.1) MUTATED   11 14
  AMP PEAK  4(2P24.1) WILD-TYPE 50 39
  AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE 
                           25                            89 
  AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE 
                           14                            39 
$`AMP PEAK  4(2P24.1) MUTATED`
TCGA-BC-4072 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10Y TCGA-BC-A112 
       48.99        37.32        10.13        27.52        23.34         5.03 
TCGA-BC-A5W4 TCGA-CC-5263 TCGA-CC-A3M9 TCGA-DD-A113 TCGA-DD-A115 TCGA-DD-A11A 
        9.50         4.24         0.10        79.73        83.57         2.60 
TCGA-DD-A1E9 TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39X TCGA-DD-A3A9 TCGA-DD-A4NA 
       90.67        29.16        13.64        55.66        30.58        33.14 
TCGA-DD-A4NI TCGA-DD-A4NO TCGA-EP-A2KA TCGA-ES-A2HS TCGA-G3-A25T TCGA-G3-A25W 
       10.78        61.45        11.74        23.01        51.02        30.71 
TCGA-G3-A25Z 
       21.53 

$`AMP PEAK  4(2P24.1) WILD-TYPE`
TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Z 
       27.91        46.78        27.52         2.99        25.32         1.12 
TCGA-BC-A110 TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-CC-5258 
       69.57        44.42        13.81         0.26        16.37         0.07 
TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-A1HT TCGA-CC-A3MA TCGA-CC-A3MB 
        2.86         3.02         3.39         3.32         0.07         0.10 
TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11B 
        0.13        37.74        53.29       112.96         7.33         0.46 
TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED 
       21.76        51.25        79.36        66.31        19.76        75.65 
TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A39V TCGA-DD-A39Y 
        6.67        12.95        49.15         6.02        21.14         5.59 
TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 
       19.73        25.81         7.66        70.06        17.59        20.12 
TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A4ND TCGA-DD-A4NE 
      102.74       107.11        13.78         0.36        73.38        21.67 
TCGA-DD-A4NF TCGA-DD-A4NG TCGA-DD-A4NH TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NL 
       14.07        14.93        14.24        15.06        39.75        56.25 
TCGA-DD-A4NN TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-ED-A459 TCGA-ED-A5KG TCGA-EP-A12J 
       29.56        93.67        12.26         0.23         0.20        10.85 
TCGA-EP-A26S TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT 
        7.76         1.97         0.62         3.19         0.43        14.40 
TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A495 
       32.45        19.07         0.20         6.35         0.13         0.03 
TCGA-FV-A496 TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A25V 
        0.33        60.36         0.39         1.22        53.79        28.27 
TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ 
       58.49        14.86        22.13        25.64         5.88        19.53 
TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SK TCGA-G3-A5SL TCGA-G3-A5SM 
       19.23        11.97         9.93         7.99         4.37 

  AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE 
                         0.10                          0.03 
  AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE 
                        90.67                        112.96 
  AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE 
                        27.52                         14.40 
[1] "0.1 - 90.7 (27.5)"  "0.0 - 113.0 (14.4)"
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  4(2P24.1) MUTATED"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK  4(2P24.1) MUTATED"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  4(2P24.1) MUTATED"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK  4(2P24.1) MUTATED"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  4(2P24.1) MUTATED"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK  4(2P24.1) MUTATED"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
[1] "hr=" "1"  
D4V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK  4(2P24.1) MUTATED         6        3         0          7
  AMP PEAK  4(2P24.1) WILD-TYPE      39       22         2         18
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK  4(2P24.1) MUTATED            1          2        0         0
  AMP PEAK  4(2P24.1) WILD-TYPE          2          2        1         1
                               vv
clus                            STAGE IVB
  AMP PEAK  4(2P24.1) MUTATED           1
  AMP PEAK  4(2P24.1) WILD-TYPE         0
D4V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  4(2P24.1) MUTATED    7  5 10  3
  AMP PEAK  4(2P24.1) WILD-TYPE 41 23 24  3
D4V4, multiclass
    clus
vv   AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE
  T1                           7                            41
  T2                           5                            23
  T3                          10                            24
  T4                           3                             3
D4V5, binary
                               cls
clus                             0  1
  AMP PEAK  4(2P24.1) MUTATED   14  2
  AMP PEAK  4(2P24.1) WILD-TYPE 60  1
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(2P24.1) MUTATED     14    2
  AMP PEAK  4(2P24.1) WILD-TYPE   60    1
   clus
vv  AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE
  0                          14                            60
  1                           2                             1
                               vv
clus                            M0 M1 MX
  AMP PEAK  4(2P24.1) MUTATED   18  1  7
  AMP PEAK  4(2P24.1) WILD-TYPE 72  1 18
D4V6, multiclass
    clus
vv   AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE
  M0                          18                            72
  M1                           1                             1
  MX                           7                            18
D4V7, binary
                               cls
clus                             0  1
  AMP PEAK  4(2P24.1) MUTATED   11 15
  AMP PEAK  4(2P24.1) WILD-TYPE 33 58
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(2P24.1) MUTATED     11   15
  AMP PEAK  4(2P24.1) WILD-TYPE   33   58
        clus
vv       AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE
  FEMALE                          11                            33
  MALE                            15                            58
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  4(2P24.1) MUTATED   20  4  0  2
  AMP PEAK  4(2P24.1) WILD-TYPE 73  6  1  6
D4V8, multiclass
    clus
vv   AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE
  R0                          20                            73
  R1                           4                             6
  R2                           0                             1
  RX                           2                             6

Clustering(5) Variable = AMP PEAK  5(2Q31.2) MUTATION ANALYSIS
D5V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  5(2Q31.2) MUTATED   11 15
  AMP PEAK  5(2Q31.2) WILD-TYPE 50 38
  AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE 
                           26                            88 
  AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE 
                           15                            38 
$`AMP PEAK  5(2Q31.2) MUTATED`
TCGA-BC-4072 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A3KG TCGA-CC-5263 
       48.99        37.32        10.13        27.52        16.37         4.24 
TCGA-DD-A113 TCGA-DD-A11C TCGA-DD-A1E9 TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39X 
       79.73        21.76        90.67        29.16        13.64        55.66 
TCGA-DD-A3A0 TCGA-DD-A3A7 TCGA-DD-A3A9 TCGA-DD-A4NI TCGA-DD-A4NQ TCGA-EP-A2KA 
       25.81        13.78        30.58        10.78        12.26        11.74 
TCGA-ES-A2HS TCGA-FV-A495 TCGA-FV-A496 TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25W 
       23.01         0.03         0.33         1.22        51.02        30.71 
TCGA-G3-A25Z TCGA-G3-A5SM 
       21.53         4.37 

$`AMP PEAK  5(2Q31.2) WILD-TYPE`
TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y 
       27.91        46.78        27.52         2.99        25.32        23.34 
TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KF 
        1.12        69.57         5.03        44.42        13.81         0.26 
TCGA-BC-A5W4 TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-A1HT 
        9.50         0.07         2.86         3.02         3.39         3.32 
TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A115 
        0.10         0.07         0.10         0.13        37.74        83.57 
TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11D 
       53.29       112.96         7.33         2.60         0.46        51.25 
TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF 
       79.36        66.31        19.76        75.65         6.67        12.95 
TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A39V TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A1 
       49.15         6.02        21.14         5.59        19.73         7.66 
TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A8 
       70.06        17.59        20.12       102.74       107.11         0.36 
TCGA-DD-A4NA TCGA-DD-A4ND TCGA-DD-A4NE TCGA-DD-A4NF TCGA-DD-A4NG TCGA-DD-A4NH 
       33.14        73.38        21.67        14.07        14.93        14.24 
TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NP 
       15.06        39.75        56.25        29.56        61.45        93.67 
TCGA-ED-A459 TCGA-ED-A5KG TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KB TCGA-EP-A2KC 
        0.23         0.20        10.85         7.76         1.97         0.62 
TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 
        3.19         0.43        14.40        32.45        19.07         0.20 
TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25U TCGA-G3-A25V 
        6.35         0.13        60.36         0.39        53.79        28.27 
TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ 
       58.49        14.86        22.13        25.64         5.88        19.53 
TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SK TCGA-G3-A5SL 
       19.23        11.97         9.93         7.99 

  AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE 
                         0.03                          0.07 
  AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE 
                        90.67                        112.96 
  AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE 
                       21.645                        14.895 
[1] "0.0 - 90.7 (21.6)"  "0.1 - 113.0 (14.9)"
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  5(2Q31.2) MUTATED"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  5(2Q31.2) MUTATED"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  5(2Q31.2) MUTATED"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
  "AMP PEAK  5(2Q31.2) MUTATED" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"AMP PEAK  5(2Q31.2) WILD-TYPE" "AMP PEAK  5(2Q31.2) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"AMP PEAK  5(2Q31.2) WILD-TYPE"   "AMP PEAK  5(2Q31.2) MUTATED" 
[1] "hr=" "1.3"
D5V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK  5(2Q31.2) MUTATED         8        8         0          3
  AMP PEAK  5(2Q31.2) WILD-TYPE      37       17         2         22
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK  5(2Q31.2) MUTATED            2          1        0         0
  AMP PEAK  5(2Q31.2) WILD-TYPE          1          3        1         1
                               vv
clus                            STAGE IVB
  AMP PEAK  5(2Q31.2) MUTATED           1
  AMP PEAK  5(2Q31.2) WILD-TYPE         0
D5V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  5(2Q31.2) MUTATED    9  9  6  2
  AMP PEAK  5(2Q31.2) WILD-TYPE 39 19 28  4
D5V4, multiclass
    clus
vv   AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  T1                           9                            39
  T2                           9                            19
  T3                           6                            28
  T4                           2                             4
D5V5, binary
                               cls
clus                             0  1
  AMP PEAK  5(2Q31.2) MUTATED   15  1
  AMP PEAK  5(2Q31.2) WILD-TYPE 59  2
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(2Q31.2) MUTATED     15    1
  AMP PEAK  5(2Q31.2) WILD-TYPE   59    2
   clus
vv  AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  0                          15                            59
  1                           1                             2
                               vv
clus                            M0 M1 MX
  AMP PEAK  5(2Q31.2) MUTATED   20  1  6
  AMP PEAK  5(2Q31.2) WILD-TYPE 70  1 19
D5V6, multiclass
    clus
vv   AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  M0                          20                            70
  M1                           1                             1
  MX                           6                            19
D5V7, binary
                               cls
clus                             0  1
  AMP PEAK  5(2Q31.2) MUTATED   14 13
  AMP PEAK  5(2Q31.2) WILD-TYPE 30 60
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(2Q31.2) MUTATED     14   13
  AMP PEAK  5(2Q31.2) WILD-TYPE   30   60
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  FEMALE                          14                            30
  MALE                            13                            60
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  5(2Q31.2) MUTATED   21  4  0  2
  AMP PEAK  5(2Q31.2) WILD-TYPE 72  6  1  6
D5V8, multiclass
    clus
vv   AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  R0                          21                            72
  R1                           4                             6
  R2                           0                             1
  RX                           2                             6

Clustering(6) Variable = AMP PEAK  6(3Q26.31) MUTATION ANALYSIS
D6V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  6(3Q26.31) MUTATED    9 13
  AMP PEAK  6(3Q26.31) WILD-TYPE 52 40
  AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE 
                            22                             92 
  AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE 
                            13                             40 
$`AMP PEAK  6(3Q26.31) MUTATED`
TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A217 TCGA-BC-A3KG 
       10.13        27.52        23.34         1.12        13.81        16.37 
TCGA-BC-A5W4 TCGA-CC-A3MA TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A11C TCGA-DD-A1EF 
        9.50         0.07        37.74        83.57        21.76        12.95 
TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39Y TCGA-DD-A3A5 TCGA-DD-A4NI TCGA-EP-A2KA 
       29.16        13.64         5.59       102.74        10.78        11.74 
TCGA-ES-A2HS TCGA-FV-A3R2 TCGA-FV-A495 TCGA-G3-A25X 
       23.01         6.35         0.03        58.49 

$`AMP PEAK  6(3Q26.31) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10W 
       48.99        27.91        37.32        46.78        27.52         2.99 
TCGA-BC-A10X TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A3KF TCGA-CC-5258 
       25.32        69.57         5.03        44.42         0.26         0.07 
TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A1HT TCGA-CC-A3M9 
        2.86         3.02         3.39         4.24         3.32         0.10 
TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 
        0.10         0.13        79.73        53.29       112.96         7.33 
TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB 
        2.60         0.46        51.25        90.67        79.36        66.31 
TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A39V 
       19.76        75.65         6.67        49.15         6.02        21.14 
TCGA-DD-A39X TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 
       55.66        19.73        25.81         7.66        70.06        17.59 
TCGA-DD-A3A4 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NA 
       20.12       107.11        13.78         0.36        30.58        33.14 
TCGA-DD-A4ND TCGA-DD-A4NE TCGA-DD-A4NF TCGA-DD-A4NG TCGA-DD-A4NH TCGA-DD-A4NJ 
       73.38        21.67        14.07        14.93        14.24        15.06 
TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A4NQ 
       39.75        56.25        29.56        61.45        93.67        12.26 
TCGA-ED-A459 TCGA-ED-A5KG TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KB TCGA-EP-A2KC 
        0.23         0.20        10.85         7.76         1.97         0.62 
TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 
        3.19         0.43        14.40        32.45        19.07         0.20 
TCGA-FV-A3R3 TCGA-FV-A496 TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25T 
        0.13         0.33        60.36         0.39         1.22        51.02 
TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG 
       53.79        28.27        30.71        14.86        21.53        22.13 
TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SK 
       25.64         5.88        19.53        19.23        11.97         9.93 
TCGA-G3-A5SL TCGA-G3-A5SM 
        7.99         4.37 

  AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE 
                          0.03                           0.07 
  AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE 
                        102.74                         112.96 
  AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE 
                        13.725                         18.330 
[1] "0.0 - 102.7 (13.7)" "0.1 - 113.0 (18.3)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "AMP PEAK  6(3Q26.31) MUTATED"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "AMP PEAK  6(3Q26.31) MUTATED"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "AMP PEAK  6(3Q26.31) MUTATED"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
[1] "hr=" "1.5"
D6V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK  6(3Q26.31) MUTATED         6        7         1          4
  AMP PEAK  6(3Q26.31) WILD-TYPE      39       18         1         21
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK  6(3Q26.31) MUTATED            0          1        0         0
  AMP PEAK  6(3Q26.31) WILD-TYPE          3          3        1         1
                                vv
clus                             STAGE IVB
  AMP PEAK  6(3Q26.31) MUTATED           0
  AMP PEAK  6(3Q26.31) WILD-TYPE         1
D6V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK  6(3Q26.31) MUTATED    7  7  6  2
  AMP PEAK  6(3Q26.31) WILD-TYPE 41 21 28  4
D6V4, multiclass
    clus
vv   AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  T1                            7                             41
  T2                            7                             21
  T3                            6                             28
  T4                            2                              4
D6V5, binary
                                cls
clus                              0  1
  AMP PEAK  6(3Q26.31) MUTATED    9  1
  AMP PEAK  6(3Q26.31) WILD-TYPE 65  2
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(3Q26.31) MUTATED      9    1
  AMP PEAK  6(3Q26.31) WILD-TYPE   65    2
   clus
vv  AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  0                            9                             65
  1                            1                              2
                                vv
clus                             M0 M1 MX
  AMP PEAK  6(3Q26.31) MUTATED   15  0  7
  AMP PEAK  6(3Q26.31) WILD-TYPE 75  2 18
D6V6, multiclass
    clus
vv   AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  M0                           15                             75
  M1                            0                              2
  MX                            7                             18
D6V7, binary
                                cls
clus                              0  1
  AMP PEAK  6(3Q26.31) MUTATED    9 13
  AMP PEAK  6(3Q26.31) WILD-TYPE 35 60
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(3Q26.31) MUTATED      9   13
  AMP PEAK  6(3Q26.31) WILD-TYPE   35   60
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  FEMALE                            9                             35
  MALE                             13                             60
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK  6(3Q26.31) MUTATED   19  2  0  1
  AMP PEAK  6(3Q26.31) WILD-TYPE 74  8  1  7
D6V8, multiclass
    clus
vv   AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  R0                           19                             74
  R1                            2                              8
  R2                            0                              1
  RX                            1                              7

Clustering(7) Variable = AMP PEAK  7(5P15.33) MUTATION ANALYSIS
D7V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  7(5P15.33) MUTATED   29 27
  AMP PEAK  7(5P15.33) WILD-TYPE 32 26
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                            56                             58 
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                            27                             26 
$`AMP PEAK  7(5P15.33) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10W TCGA-BC-A10Z TCGA-BC-A216 TCGA-BC-A217 
       37.32        10.13         2.99         1.12        44.42        13.81 
TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5263 TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MB 
       16.37         0.07         4.24         3.32         0.10         0.10 
TCGA-CC-A3MC TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A11A TCGA-DD-A11D 
        0.13        83.57        53.29       112.96         2.60        51.25 
TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EI TCGA-DD-A1EL 
       90.67        79.36         6.67        12.95         6.02        13.64 
TCGA-DD-A39V TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A3A1 TCGA-DD-A3A3 TCGA-DD-A3A5 
       21.14        55.66         5.59         7.66        17.59       102.74 
TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A4ND TCGA-DD-A4NE TCGA-DD-A4NI TCGA-DD-A4NJ 
       13.78         0.36        73.38        21.67        10.78        15.06 
TCGA-DD-A4NK TCGA-DD-A4NO TCGA-ED-A459 TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL 
       39.75        61.45         0.23         1.97         0.62         3.19 
TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A495 TCGA-FV-A4ZP 
       14.40        32.45        19.07         0.20         0.03        60.36 
TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A3CG 
        0.39         1.22        51.02        30.71        58.49        22.13 
TCGA-G3-A3CJ TCGA-G3-A5SM 
       19.53         4.37 

$`AMP PEAK  7(5P15.33) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10X 
       48.99        27.91        46.78        27.52        27.52        25.32 
TCGA-BC-A10Y TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A3KF TCGA-BC-A5W4 TCGA-CC-5260 
       23.34        69.57         5.03         0.26         9.50         2.86 
TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-A3MA TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A119 
        3.02         3.39         0.07        79.73        37.74         7.33 
TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EH 
        0.46        21.76        66.31        19.76        75.65        49.15 
TCGA-DD-A1EJ TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A2 TCGA-DD-A3A4 TCGA-DD-A3A6 
       29.16        19.73        25.81        70.06        20.12       107.11 
TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4NF TCGA-DD-A4NG TCGA-DD-A4NH TCGA-DD-A4NL 
       30.58        33.14        14.07        14.93        14.24        56.25 
TCGA-DD-A4NN TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-ED-A5KG TCGA-EP-A12J TCGA-EP-A26S 
       29.56        93.67        12.26         0.20        10.85         7.76 
TCGA-EP-A2KA TCGA-EP-A3RK TCGA-ES-A2HS TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A496 
       11.74         0.43        23.01         6.35         0.13         0.33 
TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CH TCGA-G3-A3CI 
       53.79        28.27        14.86        21.53        25.64         5.88 
TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SK TCGA-G3-A5SL 
       19.23        11.97         9.93         7.99 

  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                          0.03                           0.07 
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                        112.96                         107.11 
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                        13.795                         19.940 
[1] "0.0 - 113.0 (13.8)" "0.1 - 107.1 (19.9)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
  "AMP PEAK  7(5P15.33) MUTATED"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
  "AMP PEAK  7(5P15.33) MUTATED" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"AMP PEAK  7(5P15.33) WILD-TYPE" "AMP PEAK  7(5P15.33) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"AMP PEAK  7(5P15.33) WILD-TYPE"   "AMP PEAK  7(5P15.33) MUTATED" 
[1] "hr=" "1.1"
D7V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK  7(5P15.33) MUTATED        19       17         1         14
  AMP PEAK  7(5P15.33) WILD-TYPE      26        8         1         11
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK  7(5P15.33) MUTATED            2          0        0         1
  AMP PEAK  7(5P15.33) WILD-TYPE          1          4        1         0
                                vv
clus                             STAGE IVB
  AMP PEAK  7(5P15.33) MUTATED           0
  AMP PEAK  7(5P15.33) WILD-TYPE         1
D7V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK  7(5P15.33) MUTATED   20 18 18  1
  AMP PEAK  7(5P15.33) WILD-TYPE 28 10 16  5
D7V4, multiclass
    clus
vv   AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  T1                           20                             28
  T2                           18                             10
  T3                           18                             16
  T4                            1                              5
D7V5, binary
                                cls
clus                              0  1
  AMP PEAK  7(5P15.33) MUTATED   39  1
  AMP PEAK  7(5P15.33) WILD-TYPE 35  2
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(5P15.33) MUTATED     39    1
  AMP PEAK  7(5P15.33) WILD-TYPE   35    2
   clus
vv  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  0                           39                             35
  1                            1                              2
                                vv
clus                             M0 M1 MX
  AMP PEAK  7(5P15.33) MUTATED   49  0  9
  AMP PEAK  7(5P15.33) WILD-TYPE 41  2 16
D7V6, multiclass
    clus
vv   AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  M0                           49                             41
  M1                            0                              2
  MX                            9                             16
D7V7, binary
                                cls
clus                              0  1
  AMP PEAK  7(5P15.33) MUTATED   21 37
  AMP PEAK  7(5P15.33) WILD-TYPE 23 36
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(5P15.33) MUTATED     21   37
  AMP PEAK  7(5P15.33) WILD-TYPE   23   36
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  FEMALE                           21                             23
  MALE                             37                             36
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK  7(5P15.33) MUTATED   47  5  0  4
  AMP PEAK  7(5P15.33) WILD-TYPE 46  5  1  4
D7V8, multiclass
    clus
vv   AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  R0                           47                             46
  R1                            5                              5
  R2                            0                              1
  RX                            4                              4

Clustering(8) Variable = AMP PEAK  8(5Q35.3) MUTATION ANALYSIS
D8V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  8(5Q35.3) MUTATED   18 25
  AMP PEAK  8(5Q35.3) WILD-TYPE 43 28
  AMP PEAK  8(5Q35.3) MUTATED AMP PEAK  8(5Q35.3) WILD-TYPE 
                           43                            71 
  AMP PEAK  8(5Q35.3) MUTATED AMP PEAK  8(5Q35.3) WILD-TYPE 
                           25                            28 
$`AMP PEAK  8(5Q35.3) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10T TCGA-BC-A10W TCGA-BC-A112 TCGA-BC-A216 TCGA-CC-5263 
       37.32        27.52         2.99         5.03        44.42         4.24 
TCGA-CC-A1HT TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 
        3.32         0.10         0.13        83.57        53.29       112.96 
TCGA-DD-A119 TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EE TCGA-DD-A39V 
        7.33        51.25        90.67        79.36         6.67        21.14 
TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A3A1 TCGA-DD-A3A3 TCGA-DD-A3A5 TCGA-DD-A3A7 
       55.66         5.59         7.66        17.59       102.74        13.78 
TCGA-DD-A3A8 TCGA-DD-A4ND TCGA-DD-A4NI TCGA-DD-A4NK TCGA-DD-A4NO TCGA-EP-A2KB 
        0.36        73.38        10.78        39.75        61.45         1.97 
TCGA-EP-A2KC TCGA-EP-A3JL TCGA-ES-A2HT TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A495 
        0.62         3.19        14.40         0.20         6.35         0.03 
TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A3CG 
        0.39         1.22        51.02        30.71        58.49        22.13 
TCGA-G3-A5SM 
        4.37 

$`AMP PEAK  8(5Q35.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10X 
       48.99        27.91        10.13        46.78        27.52        25.32 
TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG 
       23.34         1.12        69.57        13.81         0.26        16.37 
TCGA-BC-A5W4 TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-A3M9 
        9.50         0.07         2.86         3.02         3.39         0.10 
TCGA-CC-A3MA TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C 
        0.07        79.73        37.74         2.60         0.46        21.76 
TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EF TCGA-DD-A1EH TCGA-DD-A1EI 
       66.31        19.76        75.65        12.95        49.15         6.02 
TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A2 TCGA-DD-A3A4 
       29.16        13.64        19.73        25.81        70.06        20.12 
TCGA-DD-A3A6 TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4NE TCGA-DD-A4NF TCGA-DD-A4NG 
      107.11        30.58        33.14        21.67        14.07        14.93 
TCGA-DD-A4NH TCGA-DD-A4NJ TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NP TCGA-DD-A4NQ 
       14.24        15.06        56.25        29.56        93.67        12.26 
TCGA-ED-A459 TCGA-ED-A5KG TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A3RK 
        0.23         0.20        10.85         7.76        11.74         0.43 
TCGA-ES-A2HS TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-FV-A496 TCGA-FV-A4ZP 
       23.01        32.45        19.07         0.13         0.33        60.36 
TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CH TCGA-G3-A3CI 
       53.79        28.27        14.86        21.53        25.64         5.88 
TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SK TCGA-G3-A5SL 
       19.53        19.23        11.97         9.93         7.99 

  AMP PEAK  8(5Q35.3) MUTATED AMP PEAK  8(5Q35.3) WILD-TYPE 
                         0.03                          0.07 
  AMP PEAK  8(5Q35.3) MUTATED AMP PEAK  8(5Q35.3) WILD-TYPE 
                       112.96                        107.11 
  AMP PEAK  8(5Q35.3) MUTATED AMP PEAK  8(5Q35.3) WILD-TYPE 
                        13.78                         19.07 
[1] "0.0 - 113.0 (13.8)" "0.1 - 107.1 (19.1)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  8(5Q35.3) MUTATED" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "AMP PEAK  8(5Q35.3) MUTATED" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
  "AMP PEAK  8(5Q35.3) MUTATED" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
  "AMP PEAK  8(5Q35.3) MUTATED" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
  "AMP PEAK  8(5Q35.3) MUTATED" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
  "AMP PEAK  8(5Q35.3) MUTATED" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "AMP PEAK  8(5Q35.3) MUTATED" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
  "AMP PEAK  8(5Q35.3) MUTATED" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
  "AMP PEAK  8(5Q35.3) MUTATED" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  8(5Q35.3) MUTATED" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "AMP PEAK  8(5Q35.3) MUTATED" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
  "AMP PEAK  8(5Q35.3) MUTATED" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
  "AMP PEAK  8(5Q35.3) MUTATED" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
  "AMP PEAK  8(5Q35.3) MUTATED" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
  "AMP PEAK  8(5Q35.3) MUTATED" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "AMP PEAK  8(5Q35.3) MUTATED" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
  "AMP PEAK  8(5Q35.3) MUTATED" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
  "AMP PEAK  8(5Q35.3) MUTATED" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  8(5Q35.3) MUTATED" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "AMP PEAK  8(5Q35.3) MUTATED" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
  "AMP PEAK  8(5Q35.3) MUTATED" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
  "AMP PEAK  8(5Q35.3) MUTATED" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
  "AMP PEAK  8(5Q35.3) MUTATED" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
  "AMP PEAK  8(5Q35.3) MUTATED" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "AMP PEAK  8(5Q35.3) MUTATED" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
  "AMP PEAK  8(5Q35.3) MUTATED"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
  "AMP PEAK  8(5Q35.3) MUTATED" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
  "AMP PEAK  8(5Q35.3) MUTATED" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"AMP PEAK  8(5Q35.3) WILD-TYPE" "AMP PEAK  8(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"AMP PEAK  8(5Q35.3) WILD-TYPE"   "AMP PEAK  8(5Q35.3) MUTATED" 
[1] "hr=" "1.3"
D8V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK  8(5Q35.3) MUTATED        15        9         1         10
  AMP PEAK  8(5Q35.3) WILD-TYPE      30       16         1         15
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK  8(5Q35.3) MUTATED            2          0        1         0
  AMP PEAK  8(5Q35.3) WILD-TYPE          1          4        0         1
                               vv
clus                            STAGE IVB
  AMP PEAK  8(5Q35.3) MUTATED           0
  AMP PEAK  8(5Q35.3) WILD-TYPE         1
D8V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  8(5Q35.3) MUTATED   15 10 15  2
  AMP PEAK  8(5Q35.3) WILD-TYPE 33 18 19  4
D8V4, multiclass
    clus
vv   AMP PEAK  8(5Q35.3) MUTATED AMP PEAK  8(5Q35.3) WILD-TYPE
  T1                          15                            33
  T2                          10                            18
  T3                          15                            19
  T4                           2                             4
D8V5, binary
                               cls
clus                             0  1
  AMP PEAK  8(5Q35.3) MUTATED   25  0
  AMP PEAK  8(5Q35.3) WILD-TYPE 49  3
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  8(5Q35.3) MUTATED     25    0
  AMP PEAK  8(5Q35.3) WILD-TYPE   49    3
   clus
vv  AMP PEAK  8(5Q35.3) MUTATED AMP PEAK  8(5Q35.3) WILD-TYPE
  0                          25                            49
  1                           0                             3
                               vv
clus                            M0 M1 MX
  AMP PEAK  8(5Q35.3) MUTATED   33  1  9
  AMP PEAK  8(5Q35.3) WILD-TYPE 57  1 16
D8V6, multiclass
    clus
vv   AMP PEAK  8(5Q35.3) MUTATED AMP PEAK  8(5Q35.3) WILD-TYPE
  M0                          33                            57
  M1                           1                             1
  MX                           9                            16
D8V7, binary
                               cls
clus                             0  1
  AMP PEAK  8(5Q35.3) MUTATED   13 30
  AMP PEAK  8(5Q35.3) WILD-TYPE 31 43
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  8(5Q35.3) MUTATED     13   30
  AMP PEAK  8(5Q35.3) WILD-TYPE   31   43
        clus
vv       AMP PEAK  8(5Q35.3) MUTATED AMP PEAK  8(5Q35.3) WILD-TYPE
  FEMALE                          13                            31
  MALE                            30                            43
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  8(5Q35.3) MUTATED   34  5  1  1
  AMP PEAK  8(5Q35.3) WILD-TYPE 59  5  0  7
D8V8, multiclass
    clus
vv   AMP PEAK  8(5Q35.3) MUTATED AMP PEAK  8(5Q35.3) WILD-TYPE
  R0                          34                            59
  R1                           5                             5
  R2                           1                             0
  RX                           1                             7

Clustering(9) Variable = AMP PEAK  9(6P25.2) MUTATION ANALYSIS
D9V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  9(6P25.2) MUTATED   24 25
  AMP PEAK  9(6P25.2) WILD-TYPE 37 28
  AMP PEAK  9(6P25.2) MUTATED AMP PEAK  9(6P25.2) WILD-TYPE 
                           49                            65 
  AMP PEAK  9(6P25.2) MUTATED AMP PEAK  9(6P25.2) WILD-TYPE 
                           25                            28 
$`AMP PEAK  9(6P25.2) MUTATED`
TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10U TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A217 
       27.91        10.13        27.52         5.03        44.42        13.81 
TCGA-BC-A3KG TCGA-CC-5261 TCGA-CC-5263 TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A114 
       16.37         3.02         4.24         0.10         0.13        37.74 
TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1EE TCGA-DD-A1EF 
      112.96         7.33         2.60        21.76         6.67        12.95 
TCGA-DD-A1EH TCGA-DD-A1EJ TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A5 
       49.15        29.16        55.66         5.59        19.73       102.74 
TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NE TCGA-DD-A4NG TCGA-DD-A4NH 
       13.78         0.36        30.58        21.67        14.93        14.24 
TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NN TCGA-EP-A2KA TCGA-EP-A2KB 
       10.78        15.06        39.75        29.56        11.74         1.97 
TCGA-EP-A2KC TCGA-ES-A2HS TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A4ZQ 
        0.62        23.01         0.20         6.35         0.13         0.39 
TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A3CG TCGA-G3-A3CK 
        1.22        53.79        58.49        14.86        22.13        19.23 
TCGA-G3-A5SL 
        7.99 

$`AMP PEAK  9(6P25.2) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10W TCGA-BC-A10X 
       48.99        37.32        46.78        27.52         2.99        25.32 
TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A3KF TCGA-BC-A5W4 TCGA-CC-5258 
       23.34         1.12        69.57         0.26         9.50         0.07 
TCGA-CC-5260 TCGA-CC-5262 TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-DD-A113 
        2.86         3.39         3.32         0.10         0.07        79.73 
TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA 
       83.57        53.29         0.46        51.25        90.67        79.36 
TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EI TCGA-DD-A1EL TCGA-DD-A39V 
       66.31        19.76        75.65         6.02        13.64        21.14 
TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A6 
       25.81         7.66        70.06        17.59        20.12       107.11 
TCGA-DD-A4NA TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NL TCGA-DD-A4NO TCGA-DD-A4NP 
       33.14        73.38        14.07        56.25        61.45        93.67 
TCGA-DD-A4NQ TCGA-ED-A459 TCGA-ED-A5KG TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A3JL 
       12.26         0.23         0.20        10.85         7.76         3.19 
TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A495 TCGA-FV-A496 
        0.43        14.40        32.45        19.07         0.03         0.33 
TCGA-FV-A4ZP TCGA-G3-A25T TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Z TCGA-G3-A3CH 
       60.36        51.02        28.27        30.71        21.53        25.64 
TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A5SJ TCGA-G3-A5SK TCGA-G3-A5SM 
        5.88        19.53        11.97         9.93         4.37 

  AMP PEAK  9(6P25.2) MUTATED AMP PEAK  9(6P25.2) WILD-TYPE 
                         0.10                          0.03 
  AMP PEAK  9(6P25.2) MUTATED AMP PEAK  9(6P25.2) WILD-TYPE 
                       112.96                        107.11 
  AMP PEAK  9(6P25.2) MUTATED AMP PEAK  9(6P25.2) WILD-TYPE 
                        14.24                         19.76 
[1] "0.1 - 113.0 (14.2)" "0.0 - 107.1 (19.8)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
  "AMP PEAK  9(6P25.2) MUTATED"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK  9(6P25.2) WILD-TYPE"   "AMP PEAK  9(6P25.2) MUTATED" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"AMP PEAK  9(6P25.2) WILD-TYPE" "AMP PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
  "AMP PEAK  9(6P25.2) MUTATED" "AMP PEAK  9(6P25.2) WILD-TYPE" 
[1] "hr=" "1.5"
D9V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK  9(6P25.2) MUTATED        17       11         2         11
  AMP PEAK  9(6P25.2) WILD-TYPE      28       14         0         14
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK  9(6P25.2) MUTATED            2          1        1         0
  AMP PEAK  9(6P25.2) WILD-TYPE          1          3        0         1
                               vv
clus                            STAGE IVB
  AMP PEAK  9(6P25.2) MUTATED           1
  AMP PEAK  9(6P25.2) WILD-TYPE         0
D9V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  9(6P25.2) MUTATED   18 12 18  1
  AMP PEAK  9(6P25.2) WILD-TYPE 30 16 16  5
D9V4, multiclass
    clus
vv   AMP PEAK  9(6P25.2) MUTATED AMP PEAK  9(6P25.2) WILD-TYPE
  T1                          18                            30
  T2                          12                            16
  T3                          18                            16
  T4                           1                             5
D9V5, binary
                               cls
clus                             0  1
  AMP PEAK  9(6P25.2) MUTATED   28  1
  AMP PEAK  9(6P25.2) WILD-TYPE 46  2
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(6P25.2) MUTATED     28    1
  AMP PEAK  9(6P25.2) WILD-TYPE   46    2
   clus
vv  AMP PEAK  9(6P25.2) MUTATED AMP PEAK  9(6P25.2) WILD-TYPE
  0                          28                            46
  1                           1                             2
                               vv
clus                            M0 M1 MX
  AMP PEAK  9(6P25.2) MUTATED   37  2 10
  AMP PEAK  9(6P25.2) WILD-TYPE 53  0 15
D9V6, multiclass
    clus
vv   AMP PEAK  9(6P25.2) MUTATED AMP PEAK  9(6P25.2) WILD-TYPE
  M0                          37                            53
  M1                           2                             0
  MX                          10                            15
D9V7, binary
                               cls
clus                             0  1
  AMP PEAK  9(6P25.2) MUTATED   22 27
  AMP PEAK  9(6P25.2) WILD-TYPE 22 46
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(6P25.2) MUTATED     22   27
  AMP PEAK  9(6P25.2) WILD-TYPE   22   46
        clus
vv       AMP PEAK  9(6P25.2) MUTATED AMP PEAK  9(6P25.2) WILD-TYPE
  FEMALE                          22                            22
  MALE                            27                            46
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  9(6P25.2) MUTATED   41  4  1  3
  AMP PEAK  9(6P25.2) WILD-TYPE 52  6  0  5
D9V8, multiclass
    clus
vv   AMP PEAK  9(6P25.2) MUTATED AMP PEAK  9(6P25.2) WILD-TYPE
  R0                          41                            52
  R1                           4                             6
  R2                           1                             0
  RX                           3                             5

Clustering(10) Variable = AMP PEAK 10(6P21.1) MUTATION ANALYSIS
D10V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 10(6P21.1) MUTATED   24 25
  AMP PEAK 10(6P21.1) WILD-TYPE 37 28
  AMP PEAK 10(6P21.1) MUTATED AMP PEAK 10(6P21.1) WILD-TYPE 
                           49                            65 
  AMP PEAK 10(6P21.1) MUTATED AMP PEAK 10(6P21.1) WILD-TYPE 
                           25                            28 
$`AMP PEAK 10(6P21.1) MUTATED`
TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A216 TCGA-BC-A217 
       27.52        27.52        23.34         1.12        44.42        13.81 
TCGA-BC-A3KF TCGA-BC-A3KG TCGA-CC-5261 TCGA-CC-5263 TCGA-CC-A3MB TCGA-CC-A3MC 
        0.26        16.37         3.02         4.24         0.10         0.13 
TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11C 
       37.74        83.57       112.96         7.33         2.60        21.76 
TCGA-DD-A11D TCGA-DD-A1EB TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EH TCGA-DD-A39X 
       51.25        66.31         6.67        12.95        49.15        55.66 
TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A5 TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NE 
        5.59        19.73       102.74         0.36        30.58        21.67 
TCGA-DD-A4NG TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NK TCGA-DD-A4NN TCGA-EP-A2KA 
       14.93        14.24        10.78        39.75        29.56        11.74 
TCGA-EP-A2KB TCGA-EP-A2KC TCGA-ES-A2HS TCGA-FV-A23B TCGA-FV-A3I0 TCGA-FV-A3R2 
        1.97         0.62        23.01        32.45         0.20         6.35 
TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A25X TCGA-G3-A3CG TCGA-G3-A3CK 
        0.39         1.22        53.79        58.49        22.13        19.23 
TCGA-G3-A5SL 
        7.99 

$`AMP PEAK 10(6P21.1) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10W 
       48.99        27.91        37.32        10.13        46.78         2.99 
TCGA-BC-A10X TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A5W4 TCGA-CC-5258 TCGA-CC-5260 
       25.32        69.57         5.03         9.50         0.07         2.86 
TCGA-CC-5262 TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-DD-A113 TCGA-DD-A116 
        3.39         3.32         0.10         0.07        79.73        53.29 
TCGA-DD-A11B TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EI 
        0.46        90.67        79.36        19.76        75.65         6.02 
TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 
       29.16        13.64        21.14        25.81         7.66        70.06 
TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A4NA TCGA-DD-A4ND 
       17.59        20.12       107.11        13.78        33.14        73.38 
TCGA-DD-A4NF TCGA-DD-A4NJ TCGA-DD-A4NL TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A4NQ 
       14.07        15.06        56.25        61.45        93.67        12.26 
TCGA-ED-A459 TCGA-ED-A5KG TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A3JL TCGA-EP-A3RK 
        0.23         0.20        10.85         7.76         3.19         0.43 
TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZP 
       14.40        19.07         0.13         0.03         0.33        60.36 
TCGA-G3-A25T TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CH 
       51.02        28.27        30.71        14.86        21.53        25.64 
TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A5SJ TCGA-G3-A5SK TCGA-G3-A5SM 
        5.88        19.53        11.97         9.93         4.37 

  AMP PEAK 10(6P21.1) MUTATED AMP PEAK 10(6P21.1) WILD-TYPE 
                         0.10                          0.03 
  AMP PEAK 10(6P21.1) MUTATED AMP PEAK 10(6P21.1) WILD-TYPE 
                       112.96                        107.11 
  AMP PEAK 10(6P21.1) MUTATED AMP PEAK 10(6P21.1) WILD-TYPE 
                        16.37                         15.06 
[1] "0.1 - 113.0 (16.4)" "0.0 - 107.1 (15.1)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK 10(6P21.1) MUTATED"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK 10(6P21.1) MUTATED"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK 10(6P21.1) MUTATED"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK 10(6P21.1) MUTATED"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
  "AMP PEAK 10(6P21.1) MUTATED"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK 10(6P21.1) MUTATED"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
  "AMP PEAK 10(6P21.1) MUTATED"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK 10(6P21.1) MUTATED"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
  "AMP PEAK 10(6P21.1) MUTATED"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
  "AMP PEAK 10(6P21.1) MUTATED"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK 10(6P21.1) MUTATED"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK 10(6P21.1) MUTATED"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK 10(6P21.1) MUTATED"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK 10(6P21.1) MUTATED"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
  "AMP PEAK 10(6P21.1) MUTATED"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK 10(6P21.1) MUTATED"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
  "AMP PEAK 10(6P21.1) MUTATED"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK 10(6P21.1) MUTATED"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
  "AMP PEAK 10(6P21.1) MUTATED"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
  "AMP PEAK 10(6P21.1) MUTATED"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK 10(6P21.1) MUTATED"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK 10(6P21.1) MUTATED"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK 10(6P21.1) MUTATED"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK 10(6P21.1) MUTATED"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
  "AMP PEAK 10(6P21.1) MUTATED"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "AMP PEAK 10(6P21.1) MUTATED"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
  "AMP PEAK 10(6P21.1) MUTATED"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK 10(6P21.1) MUTATED"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
  "AMP PEAK 10(6P21.1) MUTATED"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
  "AMP PEAK 10(6P21.1) MUTATED"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK 10(6P21.1) WILD-TYPE"   "AMP PEAK 10(6P21.1) MUTATED" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"AMP PEAK 10(6P21.1) WILD-TYPE" "AMP PEAK 10(6P21.1) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
  "AMP PEAK 10(6P21.1) MUTATED" "AMP PEAK 10(6P21.1) WILD-TYPE" 
[1] "hr=" "1.2"
D10V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 10(6P21.1) MUTATED        19       11         2         11
  AMP PEAK 10(6P21.1) WILD-TYPE      26       14         0         14
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 10(6P21.1) MUTATED            1          0        1         0
  AMP PEAK 10(6P21.1) WILD-TYPE          2          4        0         1
                               vv
clus                            STAGE IVB
  AMP PEAK 10(6P21.1) MUTATED           1
  AMP PEAK 10(6P21.1) WILD-TYPE         0
D10V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK 10(6P21.1) MUTATED   19 12 15  3
  AMP PEAK 10(6P21.1) WILD-TYPE 29 16 19  3
D10V4, multiclass
    clus
vv   AMP PEAK 10(6P21.1) MUTATED AMP PEAK 10(6P21.1) WILD-TYPE
  T1                          19                            29
  T2                          12                            16
  T3                          15                            19
  T4                           3                             3
D10V5, binary
                               cls
clus                             0  1
  AMP PEAK 10(6P21.1) MUTATED   29  0
  AMP PEAK 10(6P21.1) WILD-TYPE 45  3
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(6P21.1) MUTATED     29    0
  AMP PEAK 10(6P21.1) WILD-TYPE   45    3
   clus
vv  AMP PEAK 10(6P21.1) MUTATED AMP PEAK 10(6P21.1) WILD-TYPE
  0                          29                            45
  1                           0                             3
                               vv
clus                            M0 M1 MX
  AMP PEAK 10(6P21.1) MUTATED   38  2  9
  AMP PEAK 10(6P21.1) WILD-TYPE 52  0 16
D10V6, multiclass
    clus
vv   AMP PEAK 10(6P21.1) MUTATED AMP PEAK 10(6P21.1) WILD-TYPE
  M0                          38                            52
  M1                           2                             0
  MX                           9                            16
D10V7, binary
                               cls
clus                             0  1
  AMP PEAK 10(6P21.1) MUTATED   22 27
  AMP PEAK 10(6P21.1) WILD-TYPE 22 46
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(6P21.1) MUTATED     22   27
  AMP PEAK 10(6P21.1) WILD-TYPE   22   46
        clus
vv       AMP PEAK 10(6P21.1) MUTATED AMP PEAK 10(6P21.1) WILD-TYPE
  FEMALE                          22                            22
  MALE                            27                            46
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK 10(6P21.1) MUTATED   41  4  1  3
  AMP PEAK 10(6P21.1) WILD-TYPE 52  6  0  5
D10V8, multiclass
    clus
vv   AMP PEAK 10(6P21.1) MUTATED AMP PEAK 10(6P21.1) WILD-TYPE
  R0                          41                            52
  R1                           4                             6
  R2                           1                             0
  RX                           3                             5

Clustering(11) Variable = AMP PEAK 11(7Q21.2) MUTATION ANALYSIS
D11V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 11(7Q21.2) MUTATED   22 21
  AMP PEAK 11(7Q21.2) WILD-TYPE 39 32
  AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE 
                           43                            71 
  AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE 
                           21                            32 
$`AMP PEAK 11(7Q21.2) MUTATED`
TCGA-BC-4072 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10U TCGA-BC-A5W4 TCGA-CC-5260 
       48.99        37.32        10.13        27.52         9.50         2.86 
TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-DD-A118 TCGA-DD-A11A TCGA-DD-A11D 
        0.10         0.07         0.10       112.96         2.60        51.25 
TCGA-DD-A1E9 TCGA-DD-A1EC TCGA-DD-A1EE TCGA-DD-A1EJ TCGA-DD-A39V TCGA-DD-A39Y 
       90.67        19.76         6.67        29.16        21.14         5.59 
TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A2 TCGA-DD-A3A7 TCGA-DD-A4NA TCGA-DD-A4NG 
       19.73        25.81        70.06        13.78        33.14        14.93 
TCGA-DD-A4NI TCGA-DD-A4NK TCGA-DD-A4NQ TCGA-ED-A459 TCGA-EP-A26S TCGA-EP-A2KA 
       10.78        39.75        12.26         0.23         7.76        11.74 
TCGA-EP-A2KC TCGA-EP-A3JL TCGA-ES-A2HS TCGA-FV-A2QR TCGA-FV-A3R2 TCGA-FV-A4ZP 
        0.62         3.19        23.01        19.07         6.35        60.36 
TCGA-G3-A25T TCGA-G3-A25V TCGA-G3-A25X TCGA-G3-A3CG TCGA-G3-A3CJ TCGA-G3-A5SL 
       51.02        28.27        58.49        22.13        19.53         7.99 
TCGA-G3-A5SM 
        4.37 

$`AMP PEAK 11(7Q21.2) WILD-TYPE`
TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y 
       27.91        46.78        27.52         2.99        25.32        23.34 
TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KF 
        1.12        69.57         5.03        44.42        13.81         0.26 
TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A1HT 
       16.37         0.07         3.02         3.39         4.24         3.32 
TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A119 
        0.13        79.73        37.74        83.57        53.29         7.33 
TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1ED TCGA-DD-A1EF 
        0.46        21.76        79.36        66.31        75.65        12.95 
TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EL TCGA-DD-A39X TCGA-DD-A3A1 TCGA-DD-A3A3 
       49.15         6.02        13.64        55.66         7.66        17.59 
TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4ND 
       20.12       102.74       107.11         0.36        30.58        73.38 
TCGA-DD-A4NE TCGA-DD-A4NF TCGA-DD-A4NH TCGA-DD-A4NJ TCGA-DD-A4NL TCGA-DD-A4NN 
       21.67        14.07        14.24        15.06        56.25        29.56 
TCGA-DD-A4NO TCGA-DD-A4NP TCGA-ED-A5KG TCGA-EP-A12J TCGA-EP-A2KB TCGA-EP-A3RK 
       61.45        93.67         0.20        10.85         1.97         0.43 
TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A3I0 TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A496 
       14.40        32.45         0.20         0.13         0.03         0.33 
TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A25W TCGA-G3-A25Y TCGA-G3-A25Z 
        0.39         1.22        53.79        30.71        14.86        21.53 
TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SK 
       25.64         5.88        19.23        11.97         9.93 

  AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE 
                         0.07                          0.03 
  AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE 
                       112.96                        107.11 
  AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE 
                        19.07                         15.06 
[1] "0.1 - 113.0 (19.1)" "0.0 - 107.1 (15.1)"
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK 11(7Q21.2) WILD-TYPE"   "AMP PEAK 11(7Q21.2) MUTATED" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
  "AMP PEAK 11(7Q21.2) MUTATED" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
  "AMP PEAK 11(7Q21.2) MUTATED"   "AMP PEAK 11(7Q21.2) MUTATED" 
[1] "hr=" "1.1"
D11V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 11(7Q21.2) MUTATED        15       10         0         12
  AMP PEAK 11(7Q21.2) WILD-TYPE      30       15         2         13
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 11(7Q21.2) MUTATED            1          3        0         0
  AMP PEAK 11(7Q21.2) WILD-TYPE          2          1        1         1
                               vv
clus                            STAGE IVB
  AMP PEAK 11(7Q21.2) MUTATED           0
  AMP PEAK 11(7Q21.2) WILD-TYPE         1
D11V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK 11(7Q21.2) MUTATED   16 13 14  1
  AMP PEAK 11(7Q21.2) WILD-TYPE 32 15 20  5
D11V4, multiclass
    clus
vv   AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE
  T1                          16                            32
  T2                          13                            15
  T3                          14                            20
  T4                           1                             5
D11V5, binary
                               cls
clus                             0  1
  AMP PEAK 11(7Q21.2) MUTATED   25  2
  AMP PEAK 11(7Q21.2) WILD-TYPE 49  1
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 11(7Q21.2) MUTATED     25    2
  AMP PEAK 11(7Q21.2) WILD-TYPE   49    1
   clus
vv  AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE
  0                          25                            49
  1                           2                             1
                               vv
clus                            M0 M1 MX
  AMP PEAK 11(7Q21.2) MUTATED   35  0 10
  AMP PEAK 11(7Q21.2) WILD-TYPE 55  2 15
D11V6, multiclass
    clus
vv   AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE
  M0                          35                            55
  M1                           0                             2
  MX                          10                            15
D11V7, binary
                               cls
clus                             0  1
  AMP PEAK 11(7Q21.2) MUTATED   15 30
  AMP PEAK 11(7Q21.2) WILD-TYPE 29 43
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 11(7Q21.2) MUTATED     15   30
  AMP PEAK 11(7Q21.2) WILD-TYPE   29   43
        clus
vv       AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE
  FEMALE                          15                            29
  MALE                            30                            43
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK 11(7Q21.2) MUTATED   34  6  0  3
  AMP PEAK 11(7Q21.2) WILD-TYPE 59  4  1  5
D11V8, multiclass
    clus
vv   AMP PEAK 11(7Q21.2) MUTATED AMP PEAK 11(7Q21.2) WILD-TYPE
  R0                          34                            59
  R1                           6                             4
  R2                           0                             1
  RX                           3                             5

Clustering(12) Variable = AMP PEAK 12(8Q13.1) MUTATION ANALYSIS
D12V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 12(8Q13.1) MUTATED   34 24
  AMP PEAK 12(8Q13.1) WILD-TYPE 27 29
  AMP PEAK 12(8Q13.1) MUTATED AMP PEAK 12(8Q13.1) WILD-TYPE 
                           58                            56 
  AMP PEAK 12(8Q13.1) MUTATED AMP PEAK 12(8Q13.1) WILD-TYPE 
                           24                            29 
$`AMP PEAK 12(8Q13.1) MUTATED`
TCGA-BC-4072 TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A3KF TCGA-CC-5258 
       48.99        46.78        27.52         2.99         0.26         0.07 
TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A116 TCGA-DD-A118 
        3.32         0.10         0.10         0.13        53.29       112.96 
TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1E9 TCGA-DD-A1EC TCGA-DD-A1EE 
        7.33         2.60        21.76        90.67        19.76         6.67 
TCGA-DD-A1EF TCGA-DD-A1EI TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39Y TCGA-DD-A39Z 
       12.95         6.02        13.64        21.14         5.59        19.73 
TCGA-DD-A3A1 TCGA-DD-A3A3 TCGA-DD-A3A8 TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NG 
        7.66        17.59         0.36        73.38        14.07        14.93 
TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NQ 
       10.78        15.06        39.75        29.56        61.45        12.26 
TCGA-ED-A459 TCGA-EP-A12J TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL 
        0.23        10.85        11.74         1.97         0.62         3.19 
TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A3R2 TCGA-FV-A4ZP TCGA-FV-A4ZQ 
        0.43        23.01        14.40         6.35        60.36         0.39 
TCGA-G3-A25T TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Z TCGA-G3-A3CG 
       51.02        28.27        30.71        58.49        21.53        22.13 
TCGA-G3-A3CH TCGA-G3-A3CJ TCGA-G3-A5SJ TCGA-G3-A5SL 
       25.64        19.53        11.97         7.99 

$`AMP PEAK 12(8Q13.1) WILD-TYPE`
TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10X TCGA-BC-A10Y 
       27.91        37.32        10.13        27.52        25.32        23.34 
TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KG 
        1.12        69.57         5.03        44.42        13.81        16.37 
TCGA-BC-A5W4 TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A3MA 
        9.50         2.86         3.02         3.39         4.24         0.07 
TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1EA 
       79.73        37.74        83.57         0.46        51.25        79.36 
TCGA-DD-A1EB TCGA-DD-A1ED TCGA-DD-A1EH TCGA-DD-A1EJ TCGA-DD-A39X TCGA-DD-A3A0 
       66.31        75.65        49.15        29.16        55.66        25.81 
TCGA-DD-A3A2 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A9 
       70.06        20.12       102.74       107.11        13.78        30.58 
TCGA-DD-A4NA TCGA-DD-A4NE TCGA-DD-A4NH TCGA-DD-A4NL TCGA-DD-A4NP TCGA-ED-A5KG 
       33.14        21.67        14.24        56.25        93.67         0.20 
TCGA-EP-A26S TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3R3 TCGA-FV-A495 
        7.76        32.45        19.07         0.20         0.13         0.03 
TCGA-FV-A496 TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A25Y TCGA-G3-A3CI TCGA-G3-A3CK 
        0.33         1.22        53.79        14.86         5.88        19.23 
TCGA-G3-A5SK TCGA-G3-A5SM 
        9.93         4.37 

  AMP PEAK 12(8Q13.1) MUTATED AMP PEAK 12(8Q13.1) WILD-TYPE 
                         0.07                          0.03 
  AMP PEAK 12(8Q13.1) MUTATED AMP PEAK 12(8Q13.1) WILD-TYPE 
                       112.96                        107.11 
  AMP PEAK 12(8Q13.1) MUTATED AMP PEAK 12(8Q13.1) WILD-TYPE 
                       13.855                        20.895 
[1] "0.1 - 113.0 (13.9)" "0.0 - 107.1 (20.9)"
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"AMP PEAK 12(8Q13.1) WILD-TYPE" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"AMP PEAK 12(8Q13.1) WILD-TYPE"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
  "AMP PEAK 12(8Q13.1) MUTATED"   "AMP PEAK 12(8Q13.1) MUTATED" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
  "AMP PEAK 12(8Q13.1) MUTATED" "AMP PEAK 12(8Q13.1) WILD-TYPE" 
[1] "hr=" "1.1"
D12V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 12(8Q13.1) MUTATED        25       13         0         16
  AMP PEAK 12(8Q13.1) WILD-TYPE      20       12         2          9
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 12(8Q13.1) MUTATED            1          0        1         1
  AMP PEAK 12(8Q13.1) WILD-TYPE          2          4        0         0
                               vv
clus                            STAGE IVB
  AMP PEAK 12(8Q13.1) MUTATED           0
  AMP PEAK 12(8Q13.1) WILD-TYPE         1
D12V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK 12(8Q13.1) MUTATED   26 14 19  1
  AMP PEAK 12(8Q13.1) WILD-TYPE 22 14 15  5
D12V4, multiclass
    clus
vv   AMP PEAK 12(8Q13.1) MUTATED AMP PEAK 12(8Q13.1) WILD-TYPE
  T1                          26                            22
  T2                          14                            14
  T3                          19                            15
  T4                           1                             5
D12V5, binary
                               cls
clus                             0  1
  AMP PEAK 12(8Q13.1) MUTATED   38  1
  AMP PEAK 12(8Q13.1) WILD-TYPE 36  2
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 12(8Q13.1) MUTATED     38    1
  AMP PEAK 12(8Q13.1) WILD-TYPE   36    2
   clus
vv  AMP PEAK 12(8Q13.1) MUTATED AMP PEAK 12(8Q13.1) WILD-TYPE
  0                          38                            36
  1                           1                             2
                               vv
clus                            M0 M1 MX
  AMP PEAK 12(8Q13.1) MUTATED   46  1 14
  AMP PEAK 12(8Q13.1) WILD-TYPE 44  1 11
D12V6, multiclass
    clus
vv   AMP PEAK 12(8Q13.1) MUTATED AMP PEAK 12(8Q13.1) WILD-TYPE
  M0                          46                            44
  M1                           1                             1
  MX                          14                            11
D12V7, binary
                               cls
clus                             0  1
  AMP PEAK 12(8Q13.1) MUTATED   15 46
  AMP PEAK 12(8Q13.1) WILD-TYPE 29 27
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 12(8Q13.1) MUTATED     15   46
  AMP PEAK 12(8Q13.1) WILD-TYPE   29   27
        clus
vv       AMP PEAK 12(8Q13.1) MUTATED AMP PEAK 12(8Q13.1) WILD-TYPE
  FEMALE                          15                            29
  MALE                            46                            27
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK 12(8Q13.1) MUTATED   49  5  1  3
  AMP PEAK 12(8Q13.1) WILD-TYPE 44  5  0  5
D12V8, multiclass
    clus
vv   AMP PEAK 12(8Q13.1) MUTATED AMP PEAK 12(8Q13.1) WILD-TYPE
  R0                          49                            44
  R1                           5                             5
  R2                           1                             0
  RX                           3                             5

Clustering(13) Variable = AMP PEAK 13(8Q24.13) MUTATION ANALYSIS
D13V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 13(8Q24.13) MUTATED   38 29
  AMP PEAK 13(8Q24.13) WILD-TYPE 23 24
  AMP PEAK 13(8Q24.13) MUTATED AMP PEAK 13(8Q24.13) WILD-TYPE 
                            67                             47 
  AMP PEAK 13(8Q24.13) MUTATED AMP PEAK 13(8Q24.13) WILD-TYPE 
                            29                             24 
$`AMP PEAK 13(8Q24.13) MUTATED`
TCGA-BC-4072 TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A3KF 
       48.99        46.78        27.52        27.52         2.99         0.26 
TCGA-CC-5258 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MA 
        0.07         3.02         3.39         3.32         0.10         0.07 
TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 
        0.10         0.13        79.73        53.29       112.96         7.33 
TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1E9 TCGA-DD-A1EC TCGA-DD-A1EE TCGA-DD-A1EF 
        2.60        21.76        90.67        19.76         6.67        12.95 
TCGA-DD-A1EI TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A39Z 
        6.02        13.64        21.14        55.66         5.59        19.73 
TCGA-DD-A3A1 TCGA-DD-A3A3 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A4ND TCGA-DD-A4NF 
        7.66        17.59        13.78         0.36        73.38        14.07 
TCGA-DD-A4NG TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NN TCGA-DD-A4NO 
       14.93        10.78        15.06        39.75        29.56        61.45 
TCGA-DD-A4NQ TCGA-ED-A459 TCGA-EP-A12J TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC 
       12.26         0.23        10.85        11.74         1.97         0.62 
TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A3I0 TCGA-FV-A3R2 
        3.19         0.43        23.01        14.40         0.20         6.35 
TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W 
       60.36         0.39        51.02        53.79        28.27        30.71 
TCGA-G3-A25X TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CJ TCGA-G3-A5SJ 
       58.49        21.53        22.13        25.64        19.53        11.97 
TCGA-G3-A5SL 
        7.99 

$`AMP PEAK 13(8Q24.13) WILD-TYPE`
TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z 
       27.91        37.32        10.13        25.32        23.34         1.12 
TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KG TCGA-BC-A5W4 
       69.57         5.03        44.42        13.81        16.37         9.50 
TCGA-CC-5260 TCGA-CC-5263 TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A11B TCGA-DD-A11D 
        2.86         4.24        37.74        83.57         0.46        51.25 
TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1ED TCGA-DD-A1EH TCGA-DD-A1EJ TCGA-DD-A3A0 
       79.36        66.31        75.65        49.15        29.16        25.81 
TCGA-DD-A3A2 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A9 TCGA-DD-A4NA 
       70.06        20.12       102.74       107.11        30.58        33.14 
TCGA-DD-A4NE TCGA-DD-A4NH TCGA-DD-A4NL TCGA-DD-A4NP TCGA-ED-A5KG TCGA-EP-A26S 
       21.67        14.24        56.25        93.67         0.20         7.76 
TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A496 TCGA-G3-A25S 
       32.45        19.07         0.13         0.03         0.33         1.22 
TCGA-G3-A25Y TCGA-G3-A3CI TCGA-G3-A3CK TCGA-G3-A5SK TCGA-G3-A5SM 
       14.86         5.88        19.23         9.93         4.37 

  AMP PEAK 13(8Q24.13) MUTATED AMP PEAK 13(8Q24.13) WILD-TYPE 
                          0.07                           0.03 
  AMP PEAK 13(8Q24.13) MUTATED AMP PEAK 13(8Q24.13) WILD-TYPE 
                        112.96                         107.11 
  AMP PEAK 13(8Q24.13) MUTATED AMP PEAK 13(8Q24.13) WILD-TYPE 
                         13.78                          21.67 
[1] "0.1 - 113.0 (13.8)" "0.0 - 107.1 (21.7)"
                    TCGA-BC-4072                     TCGA-BC-4073 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 13(8Q24.13) WILD-TYPE" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 13(8Q24.13) WILD-TYPE" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 13(8Q24.13) WILD-TYPE" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 13(8Q24.13) WILD-TYPE" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 13(8Q24.13) WILD-TYPE"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 13(8Q24.13) WILD-TYPE" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK 13(8Q24.13) WILD-TYPE"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 13(8Q24.13) WILD-TYPE"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 13(8Q24.13) WILD-TYPE"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 13(8Q24.13) WILD-TYPE"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 13(8Q24.13) WILD-TYPE" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 13(8Q24.13) WILD-TYPE" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"AMP PEAK 13(8Q24.13) WILD-TYPE"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK 13(8Q24.13) WILD-TYPE"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK 13(8Q24.13) WILD-TYPE"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 13(8Q24.13) WILD-TYPE"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 13(8Q24.13) WILD-TYPE" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK 13(8Q24.13) WILD-TYPE" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"AMP PEAK 13(8Q24.13) WILD-TYPE"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 13(8Q24.13) WILD-TYPE" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 13(8Q24.13) WILD-TYPE" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 13(8Q24.13) WILD-TYPE" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 13(8Q24.13) WILD-TYPE" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 13(8Q24.13) WILD-TYPE"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 13(8Q24.13) WILD-TYPE" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK 13(8Q24.13) WILD-TYPE"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 13(8Q24.13) WILD-TYPE"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 13(8Q24.13) WILD-TYPE"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 13(8Q24.13) WILD-TYPE"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 13(8Q24.13) WILD-TYPE" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 13(8Q24.13) WILD-TYPE" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"AMP PEAK 13(8Q24.13) WILD-TYPE"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK 13(8Q24.13) WILD-TYPE"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK 13(8Q24.13) WILD-TYPE"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 13(8Q24.13) WILD-TYPE"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 13(8Q24.13) WILD-TYPE" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK 13(8Q24.13) WILD-TYPE" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"AMP PEAK 13(8Q24.13) WILD-TYPE"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 13(8Q24.13) WILD-TYPE" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 13(8Q24.13) WILD-TYPE" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 13(8Q24.13) WILD-TYPE" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 13(8Q24.13) WILD-TYPE" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 13(8Q24.13) WILD-TYPE"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 13(8Q24.13) WILD-TYPE" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK 13(8Q24.13) WILD-TYPE"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 13(8Q24.13) WILD-TYPE"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 13(8Q24.13) WILD-TYPE"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 13(8Q24.13) WILD-TYPE"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 13(8Q24.13) WILD-TYPE" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 13(8Q24.13) WILD-TYPE" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"AMP PEAK 13(8Q24.13) WILD-TYPE"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK 13(8Q24.13) WILD-TYPE"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK 13(8Q24.13) WILD-TYPE"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 13(8Q24.13) WILD-TYPE"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 13(8Q24.13) WILD-TYPE" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK 13(8Q24.13) WILD-TYPE" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"AMP PEAK 13(8Q24.13) WILD-TYPE"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
  "AMP PEAK 13(8Q24.13) MUTATED"   "AMP PEAK 13(8Q24.13) MUTATED" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
  "AMP PEAK 13(8Q24.13) MUTATED" "AMP PEAK 13(8Q24.13) WILD-TYPE" 
[1] "hr=" "1.2"
D13V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 13(8Q24.13) MUTATED        27       16         0         17
  AMP PEAK 13(8Q24.13) WILD-TYPE      18        9         2          8
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 13(8Q24.13) MUTATED            2          1        1         1
  AMP PEAK 13(8Q24.13) WILD-TYPE          1          3        0         0
                                vv
clus                             STAGE IVB
  AMP PEAK 13(8Q24.13) MUTATED           0
  AMP PEAK 13(8Q24.13) WILD-TYPE         1
D13V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 13(8Q24.13) MUTATED   28 17 21  3
  AMP PEAK 13(8Q24.13) WILD-TYPE 20 11 13  3
D13V4, multiclass
    clus
vv   AMP PEAK 13(8Q24.13) MUTATED AMP PEAK 13(8Q24.13) WILD-TYPE
  T1                           28                             20
  T2                           17                             11
  T3                           21                             13
  T4                            3                              3
D13V5, binary
                                cls
clus                              0  1
  AMP PEAK 13(8Q24.13) MUTATED   44  1
  AMP PEAK 13(8Q24.13) WILD-TYPE 30  2
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(8Q24.13) MUTATED     44    1
  AMP PEAK 13(8Q24.13) WILD-TYPE   30    2
   clus
vv  AMP PEAK 13(8Q24.13) MUTATED AMP PEAK 13(8Q24.13) WILD-TYPE
  0                           44                             30
  1                            1                              2
                                vv
clus                             M0 M1 MX
  AMP PEAK 13(8Q24.13) MUTATED   54  1 15
  AMP PEAK 13(8Q24.13) WILD-TYPE 36  1 10
D13V6, multiclass
    clus
vv   AMP PEAK 13(8Q24.13) MUTATED AMP PEAK 13(8Q24.13) WILD-TYPE
  M0                           54                             36
  M1                            1                              1
  MX                           15                             10
D13V7, binary
                                cls
clus                              0  1
  AMP PEAK 13(8Q24.13) MUTATED   19 51
  AMP PEAK 13(8Q24.13) WILD-TYPE 25 22
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(8Q24.13) MUTATED     19   51
  AMP PEAK 13(8Q24.13) WILD-TYPE   25   22
        clus
vv       AMP PEAK 13(8Q24.13) MUTATED AMP PEAK 13(8Q24.13) WILD-TYPE
  FEMALE                           19                             25
  MALE                             51                             22
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 13(8Q24.13) MUTATED   55  6  1  4
  AMP PEAK 13(8Q24.13) WILD-TYPE 38  4  0  4
D13V8, multiclass
    clus
vv   AMP PEAK 13(8Q24.13) MUTATED AMP PEAK 13(8Q24.13) WILD-TYPE
  R0                           55                             38
  R1                            6                              4
  R2                            1                              0
  RX                            4                              4

Clustering(14) Variable = AMP PEAK 14(9Q34.2) MUTATION ANALYSIS
D14V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 14(9Q34.2) MUTATED    5  8
  AMP PEAK 14(9Q34.2) WILD-TYPE 56 45
  AMP PEAK 14(9Q34.2) MUTATED AMP PEAK 14(9Q34.2) WILD-TYPE 
                           13                           101 
  AMP PEAK 14(9Q34.2) MUTATED AMP PEAK 14(9Q34.2) WILD-TYPE 
                            8                            45 
$`AMP PEAK 14(9Q34.2) MUTATED`
TCGA-BC-A10T TCGA-BC-A10Y TCGA-CC-5261 TCGA-CC-5263 TCGA-DD-A3A0 TCGA-DD-A3A5 
       27.52        23.34         3.02         4.24        25.81       102.74 
TCGA-DD-A3A6 TCGA-EP-A2KB TCGA-ES-A2HS TCGA-FV-A495 TCGA-FV-A4ZP TCGA-G3-A25U 
      107.11         1.97        23.01         0.03        60.36        53.79 
TCGA-G3-A3CG 
       22.13 

$`AMP PEAK 14(9Q34.2) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10U 
       48.99        27.91        37.32        10.13        46.78        27.52 
TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 
        2.99        25.32         1.12        69.57         5.03        44.42 
TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-CC-5258 TCGA-CC-5260 
       13.81         0.26        16.37         9.50         0.07         2.86 
TCGA-CC-5262 TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC 
        3.39         3.32         0.10         0.07         0.10         0.13 
TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 
       79.73        37.74        83.57        53.29       112.96         7.33 
TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA 
        2.60         0.46        21.76        51.25        90.67        79.36 
TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EH 
       66.31        19.76        75.65         6.67        12.95        49.15 
TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39X TCGA-DD-A39Y 
        6.02        29.16        13.64        21.14        55.66         5.59 
TCGA-DD-A39Z TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A7 
       19.73         7.66        70.06        17.59        20.12        13.78 
TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4ND TCGA-DD-A4NE TCGA-DD-A4NF 
        0.36        30.58        33.14        73.38        21.67        14.07 
TCGA-DD-A4NG TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NL 
       14.93        14.24        10.78        15.06        39.75        56.25 
TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-ED-A459 TCGA-ED-A5KG 
       29.56        61.45        93.67        12.26         0.23         0.20 
TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK 
       10.85         7.76        11.74         0.62         3.19         0.43 
TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A3R3 
       14.40        32.45        19.07         0.20         6.35         0.13 
TCGA-FV-A496 TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25V TCGA-G3-A25W 
        0.33         0.39         1.22        51.02        28.27        30.71 
TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ 
       58.49        14.86        21.53        25.64         5.88        19.53 
TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SK TCGA-G3-A5SL TCGA-G3-A5SM 
       19.23        11.97         9.93         7.99         4.37 

  AMP PEAK 14(9Q34.2) MUTATED AMP PEAK 14(9Q34.2) WILD-TYPE 
                         0.03                          0.07 
  AMP PEAK 14(9Q34.2) MUTATED AMP PEAK 14(9Q34.2) WILD-TYPE 
                       107.11                        112.96 
  AMP PEAK 14(9Q34.2) MUTATED AMP PEAK 14(9Q34.2) WILD-TYPE 
                        23.34                         14.86 
[1] "0.0 - 107.1 (23.3)" "0.1 - 113.0 (14.9)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 14(9Q34.2) WILD-TYPE"   "AMP PEAK 14(9Q34.2) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 14(9Q34.2) WILD-TYPE"   "AMP PEAK 14(9Q34.2) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK 14(9Q34.2) MUTATED" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK 14(9Q34.2) MUTATED" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK 14(9Q34.2) WILD-TYPE"   "AMP PEAK 14(9Q34.2) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
  "AMP PEAK 14(9Q34.2) MUTATED"   "AMP PEAK 14(9Q34.2) MUTATED" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK 14(9Q34.2) MUTATED" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK 14(9Q34.2) MUTATED" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"AMP PEAK 14(9Q34.2) WILD-TYPE"   "AMP PEAK 14(9Q34.2) MUTATED" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"AMP PEAK 14(9Q34.2) WILD-TYPE"   "AMP PEAK 14(9Q34.2) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"AMP PEAK 14(9Q34.2) WILD-TYPE"   "AMP PEAK 14(9Q34.2) MUTATED" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK 14(9Q34.2) WILD-TYPE"   "AMP PEAK 14(9Q34.2) MUTATED" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 14(9Q34.2) WILD-TYPE"   "AMP PEAK 14(9Q34.2) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 14(9Q34.2) WILD-TYPE"   "AMP PEAK 14(9Q34.2) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK 14(9Q34.2) MUTATED" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK 14(9Q34.2) MUTATED" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK 14(9Q34.2) WILD-TYPE"   "AMP PEAK 14(9Q34.2) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
  "AMP PEAK 14(9Q34.2) MUTATED"   "AMP PEAK 14(9Q34.2) MUTATED" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK 14(9Q34.2) MUTATED" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK 14(9Q34.2) MUTATED" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"AMP PEAK 14(9Q34.2) WILD-TYPE"   "AMP PEAK 14(9Q34.2) MUTATED" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"AMP PEAK 14(9Q34.2) WILD-TYPE"   "AMP PEAK 14(9Q34.2) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"AMP PEAK 14(9Q34.2) WILD-TYPE"   "AMP PEAK 14(9Q34.2) MUTATED" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK 14(9Q34.2) WILD-TYPE"   "AMP PEAK 14(9Q34.2) MUTATED" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 14(9Q34.2) WILD-TYPE"   "AMP PEAK 14(9Q34.2) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 14(9Q34.2) WILD-TYPE"   "AMP PEAK 14(9Q34.2) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "AMP PEAK 14(9Q34.2) MUTATED" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "AMP PEAK 14(9Q34.2) MUTATED" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"AMP PEAK 14(9Q34.2) WILD-TYPE"   "AMP PEAK 14(9Q34.2) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
  "AMP PEAK 14(9Q34.2) MUTATED"   "AMP PEAK 14(9Q34.2) MUTATED" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "AMP PEAK 14(9Q34.2) MUTATED" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "AMP PEAK 14(9Q34.2) MUTATED" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"AMP PEAK 14(9Q34.2) WILD-TYPE"   "AMP PEAK 14(9Q34.2) MUTATED" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"AMP PEAK 14(9Q34.2) WILD-TYPE"   "AMP PEAK 14(9Q34.2) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"AMP PEAK 14(9Q34.2) WILD-TYPE"   "AMP PEAK 14(9Q34.2) MUTATED" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"AMP PEAK 14(9Q34.2) WILD-TYPE"   "AMP PEAK 14(9Q34.2) MUTATED" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"AMP PEAK 14(9Q34.2) WILD-TYPE" "AMP PEAK 14(9Q34.2) WILD-TYPE" 
[1] "hr=" "1.1"
D14V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 14(9Q34.2) MUTATED         5        3         1          3
  AMP PEAK 14(9Q34.2) WILD-TYPE      40       22         1         22
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 14(9Q34.2) MUTATED            0          0        0         1
  AMP PEAK 14(9Q34.2) WILD-TYPE          3          4        1         0
                               vv
clus                            STAGE IVB
  AMP PEAK 14(9Q34.2) MUTATED           0
  AMP PEAK 14(9Q34.2) WILD-TYPE         1
D14V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK 14(9Q34.2) MUTATED    6  3  4  2
  AMP PEAK 14(9Q34.2) WILD-TYPE 42 25 30  4
D14V4, multiclass
    clus
vv   AMP PEAK 14(9Q34.2) MUTATED AMP PEAK 14(9Q34.2) WILD-TYPE
  T1                           6                            42
  T2                           3                            25
  T3                           4                            30
  T4                           2                             4
D14V5, binary
                               cls
clus                             0  1
  AMP PEAK 14(9Q34.2) MUTATED    7  1
  AMP PEAK 14(9Q34.2) WILD-TYPE 67  2
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 14(9Q34.2) MUTATED      7    1
  AMP PEAK 14(9Q34.2) WILD-TYPE   67    2
   clus
vv  AMP PEAK 14(9Q34.2) MUTATED AMP PEAK 14(9Q34.2) WILD-TYPE
  0                           7                            67
  1                           1                             2
                               vv
clus                            M0 M1 MX
  AMP PEAK 14(9Q34.2) MUTATED   10  0  5
  AMP PEAK 14(9Q34.2) WILD-TYPE 80  2 20
D14V6, multiclass
    clus
vv   AMP PEAK 14(9Q34.2) MUTATED AMP PEAK 14(9Q34.2) WILD-TYPE
  M0                          10                            80
  M1                           0                             2
  MX                           5                            20
D14V7, binary
                               cls
clus                             0  1
  AMP PEAK 14(9Q34.2) MUTATED    5 10
  AMP PEAK 14(9Q34.2) WILD-TYPE 39 63
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 14(9Q34.2) MUTATED      5   10
  AMP PEAK 14(9Q34.2) WILD-TYPE   39   63
        clus
vv       AMP PEAK 14(9Q34.2) MUTATED AMP PEAK 14(9Q34.2) WILD-TYPE
  FEMALE                           5                            39
  MALE                            10                            63
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK 14(9Q34.2) MUTATED    9  3  0  3
  AMP PEAK 14(9Q34.2) WILD-TYPE 84  7  1  5
D14V8, multiclass
    clus
vv   AMP PEAK 14(9Q34.2) MUTATED AMP PEAK 14(9Q34.2) WILD-TYPE
  R0                           9                            84
  R1                           3                             7
  R2                           0                             1
  RX                           3                             5

Clustering(15) Variable = AMP PEAK 15(10P15.1) MUTATION ANALYSIS
D15V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 15(10P15.1) MUTATED   13 10
  AMP PEAK 15(10P15.1) WILD-TYPE 48 43
  AMP PEAK 15(10P15.1) MUTATED AMP PEAK 15(10P15.1) WILD-TYPE 
                            23                             91 
  AMP PEAK 15(10P15.1) MUTATED AMP PEAK 15(10P15.1) WILD-TYPE 
                            10                             43 
$`AMP PEAK 15(10P15.1) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A217 TCGA-CC-A3MA TCGA-CC-A3MB 
       37.32        10.13        27.52        13.81         0.07         0.10 
TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A1EF TCGA-DD-A1EL TCGA-DD-A3A7 TCGA-DD-A3A9 
       79.73        37.74        12.95        13.64        13.78        30.58 
TCGA-DD-A4NG TCGA-DD-A4NQ TCGA-ED-A459 TCGA-EP-A2KA TCGA-EP-A2KB TCGA-ES-A2HS 
       14.93        12.26         0.23        11.74         1.97        23.01 
TCGA-FV-A4ZQ TCGA-G3-A25X TCGA-G3-A5SJ TCGA-G3-A5SL TCGA-G3-A5SM 
        0.39        58.49        11.97         7.99         4.37 

$`AMP PEAK 15(10P15.1) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X 
       48.99        27.91        46.78        27.52         2.99        25.32 
TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A3KF 
       23.34         1.12        69.57         5.03        44.42         0.26 
TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 
       16.37         9.50         0.07         2.86         3.02         3.39 
TCGA-CC-5263 TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MC TCGA-DD-A115 TCGA-DD-A116 
        4.24         3.32         0.10         0.13        83.57        53.29 
TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D 
      112.96         7.33         2.60         0.46        21.76        51.25 
TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE 
       90.67        79.36        66.31        19.76        75.65         6.67 
TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A39V TCGA-DD-A39X TCGA-DD-A39Y 
       49.15         6.02        29.16        21.14        55.66         5.59 
TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 
       19.73        25.81         7.66        70.06        17.59        20.12 
TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A8 TCGA-DD-A4NA TCGA-DD-A4ND TCGA-DD-A4NE 
      102.74       107.11         0.36        33.14        73.38        21.67 
TCGA-DD-A4NF TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NL 
       14.07        14.24        10.78        15.06        39.75        56.25 
TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NP TCGA-ED-A5KG TCGA-EP-A12J TCGA-EP-A26S 
       29.56        61.45        93.67         0.20        10.85         7.76 
TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR 
        0.62         3.19         0.43        14.40        32.45        19.07 
TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZP 
        0.20         6.35         0.13         0.03         0.33        60.36 
TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Y 
        1.22        51.02        53.79        28.27        30.71        14.86 
TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
       21.53        22.13        25.64         5.88        19.53        19.23 
TCGA-G3-A5SK 
        9.93 

  AMP PEAK 15(10P15.1) MUTATED AMP PEAK 15(10P15.1) WILD-TYPE 
                          0.07                           0.03 
  AMP PEAK 15(10P15.1) MUTATED AMP PEAK 15(10P15.1) WILD-TYPE 
                         79.73                         112.96 
  AMP PEAK 15(10P15.1) MUTATED AMP PEAK 15(10P15.1) WILD-TYPE 
                         12.95                          19.53 
[1] "0.1 - 79.7 (12.9)"  "0.0 - 113.0 (19.5)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 15(10P15.1) MUTATED"   "AMP PEAK 15(10P15.1) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 15(10P15.1) WILD-TYPE"   "AMP PEAK 15(10P15.1) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK 15(10P15.1) WILD-TYPE"   "AMP PEAK 15(10P15.1) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "AMP PEAK 15(10P15.1) MUTATED"   "AMP PEAK 15(10P15.1) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"AMP PEAK 15(10P15.1) WILD-TYPE"   "AMP PEAK 15(10P15.1) MUTATED" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
  "AMP PEAK 15(10P15.1) MUTATED"   "AMP PEAK 15(10P15.1) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 15(10P15.1) WILD-TYPE"   "AMP PEAK 15(10P15.1) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
  "AMP PEAK 15(10P15.1) MUTATED"   "AMP PEAK 15(10P15.1) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 15(10P15.1) MUTATED"   "AMP PEAK 15(10P15.1) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 15(10P15.1) WILD-TYPE"   "AMP PEAK 15(10P15.1) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK 15(10P15.1) WILD-TYPE"   "AMP PEAK 15(10P15.1) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "AMP PEAK 15(10P15.1) MUTATED"   "AMP PEAK 15(10P15.1) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"AMP PEAK 15(10P15.1) WILD-TYPE"   "AMP PEAK 15(10P15.1) MUTATED" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
  "AMP PEAK 15(10P15.1) MUTATED"   "AMP PEAK 15(10P15.1) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 15(10P15.1) WILD-TYPE"   "AMP PEAK 15(10P15.1) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
  "AMP PEAK 15(10P15.1) MUTATED"   "AMP PEAK 15(10P15.1) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 15(10P15.1) MUTATED"   "AMP PEAK 15(10P15.1) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 15(10P15.1) WILD-TYPE"   "AMP PEAK 15(10P15.1) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK 15(10P15.1) WILD-TYPE"   "AMP PEAK 15(10P15.1) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "AMP PEAK 15(10P15.1) MUTATED"   "AMP PEAK 15(10P15.1) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"AMP PEAK 15(10P15.1) WILD-TYPE"   "AMP PEAK 15(10P15.1) MUTATED" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
  "AMP PEAK 15(10P15.1) MUTATED"   "AMP PEAK 15(10P15.1) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 15(10P15.1) WILD-TYPE"   "AMP PEAK 15(10P15.1) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 15(10P15.1) WILD-TYPE" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
  "AMP PEAK 15(10P15.1) MUTATED" "AMP PEAK 15(10P15.1) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
  "AMP PEAK 15(10P15.1) MUTATED"   "AMP PEAK 15(10P15.1) MUTATED" 
[1] "hr=" "1.4"
D15V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 15(10P15.1) MUTATED         5        8         0          6
  AMP PEAK 15(10P15.1) WILD-TYPE      40       17         2         19
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 15(10P15.1) MUTATED            1          0        0         0
  AMP PEAK 15(10P15.1) WILD-TYPE          2          4        1         1
                                vv
clus                             STAGE IVB
  AMP PEAK 15(10P15.1) MUTATED           1
  AMP PEAK 15(10P15.1) WILD-TYPE         0
D15V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 15(10P15.1) MUTATED    5  9  8  2
  AMP PEAK 15(10P15.1) WILD-TYPE 43 19 26  4
D15V4, multiclass
    clus
vv   AMP PEAK 15(10P15.1) MUTATED AMP PEAK 15(10P15.1) WILD-TYPE
  T1                            5                             43
  T2                            9                             19
  T3                            8                             26
  T4                            2                              4
D15V5, binary
                                cls
clus                              0  1
  AMP PEAK 15(10P15.1) MUTATED   11  0
  AMP PEAK 15(10P15.1) WILD-TYPE 63  3
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(10P15.1) MUTATED     11    0
  AMP PEAK 15(10P15.1) WILD-TYPE   63    3
   clus
vv  AMP PEAK 15(10P15.1) MUTATED AMP PEAK 15(10P15.1) WILD-TYPE
  0                           11                             63
  1                            0                              3
                                vv
clus                             M0 M1 MX
  AMP PEAK 15(10P15.1) MUTATED   17  1  6
  AMP PEAK 15(10P15.1) WILD-TYPE 73  1 19
D15V6, multiclass
    clus
vv   AMP PEAK 15(10P15.1) MUTATED AMP PEAK 15(10P15.1) WILD-TYPE
  M0                           17                             73
  M1                            1                              1
  MX                            6                             19
D15V7, binary
                                cls
clus                              0  1
  AMP PEAK 15(10P15.1) MUTATED    8 16
  AMP PEAK 15(10P15.1) WILD-TYPE 36 57
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(10P15.1) MUTATED      8   16
  AMP PEAK 15(10P15.1) WILD-TYPE   36   57
        clus
vv       AMP PEAK 15(10P15.1) MUTATED AMP PEAK 15(10P15.1) WILD-TYPE
  FEMALE                            8                             36
  MALE                             16                             57
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 15(10P15.1) MUTATED   21  2  0  1
  AMP PEAK 15(10P15.1) WILD-TYPE 72  8  1  7
D15V8, multiclass
    clus
vv   AMP PEAK 15(10P15.1) MUTATED AMP PEAK 15(10P15.1) WILD-TYPE
  R0                           21                             72
  R1                            2                              8
  R2                            0                              1
  RX                            1                              7

Clustering(16) Variable = AMP PEAK 16(11Q13.3) MUTATION ANALYSIS
D16V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 16(11Q13.3) MUTATED   12  8
  AMP PEAK 16(11Q13.3) WILD-TYPE 49 45
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                            20                             94 
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                             8                             45 
$`AMP PEAK 16(11Q13.3) MUTATED`
TCGA-BC-4073 TCGA-BC-A10T TCGA-CC-A3M9 TCGA-CC-A3MB TCGA-DD-A115 TCGA-DD-A119 
       27.91        27.52         0.10         0.10        83.57         7.33 
TCGA-DD-A11A TCGA-DD-A1EB TCGA-DD-A39Y TCGA-DD-A3A0 TCGA-DD-A4ND TCGA-DD-A4NE 
        2.60        66.31         5.59        25.81        73.38        21.67 
TCGA-DD-A4NN TCGA-EP-A2KA TCGA-FV-A496 TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25W 
       29.56        11.74         0.33         0.39         1.22        30.71 
TCGA-G3-A3CG TCGA-G3-A5SJ 
       22.13        11.97 

$`AMP PEAK 16(11Q13.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10W 
       48.99        37.32        10.13        46.78        27.52         2.99 
TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 
       25.32        23.34         1.12        69.57         5.03        44.42 
TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-CC-5258 TCGA-CC-5260 
       13.81         0.26        16.37         9.50         0.07         2.86 
TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A1HT TCGA-CC-A3MA TCGA-CC-A3MC 
        3.02         3.39         4.24         3.32         0.07         0.13 
TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A11B TCGA-DD-A11C 
       79.73        37.74        53.29       112.96         0.46        21.76 
TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE 
       51.25        90.67        79.36        19.76        75.65         6.67 
TCGA-DD-A1EF TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39V 
       12.95        49.15         6.02        29.16        13.64        21.14 
TCGA-DD-A39X TCGA-DD-A39Z TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 
       55.66        19.73         7.66        70.06        17.59        20.12 
TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NA 
      102.74       107.11        13.78         0.36        30.58        33.14 
TCGA-DD-A4NF TCGA-DD-A4NG TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NK 
       14.07        14.93        14.24        10.78        15.06        39.75 
TCGA-DD-A4NL TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-ED-A459 TCGA-ED-A5KG 
       56.25        61.45        93.67        12.26         0.23         0.20 
TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK 
       10.85         7.76         1.97         0.62         3.19         0.43 
TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3R2 
       23.01        14.40        32.45        19.07         0.20         6.35 
TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A4ZP TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V 
        0.13         0.03        60.36        51.02        53.79        28.27 
TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ 
       58.49        14.86        21.53        25.64         5.88        19.53 
TCGA-G3-A3CK TCGA-G3-A5SK TCGA-G3-A5SL TCGA-G3-A5SM 
       19.23         9.93         7.99         4.37 

  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                          0.10                           0.03 
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                         83.57                         112.96 
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                        16.820                         15.715 
[1] "0.1 - 83.6 (16.8)"  "0.0 - 113.0 (15.7)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
  "AMP PEAK 16(11Q13.3) MUTATED"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
  "AMP PEAK 16(11Q13.3) MUTATED"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
  "AMP PEAK 16(11Q13.3) MUTATED"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
  "AMP PEAK 16(11Q13.3) MUTATED"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
  "AMP PEAK 16(11Q13.3) MUTATED"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
  "AMP PEAK 16(11Q13.3) MUTATED"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
[1] "hr=" "1"  
D16V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 16(11Q13.3) MUTATED        11        0         0          7
  AMP PEAK 16(11Q13.3) WILD-TYPE      34       25         2         18
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 16(11Q13.3) MUTATED            1          0        1         0
  AMP PEAK 16(11Q13.3) WILD-TYPE          2          4        0         1
                                vv
clus                             STAGE IVB
  AMP PEAK 16(11Q13.3) MUTATED           0
  AMP PEAK 16(11Q13.3) WILD-TYPE         1
D16V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 16(11Q13.3) MUTATED   11  0  9  1
  AMP PEAK 16(11Q13.3) WILD-TYPE 37 28 25  5
D16V4, multiclass
    clus
vv   AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  T1                           11                             37
  T2                            0                             28
  T3                            9                             25
  T4                            1                              5
D16V5, binary
                                cls
clus                              0  1
  AMP PEAK 16(11Q13.3) MUTATED   14  0
  AMP PEAK 16(11Q13.3) WILD-TYPE 60  3
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(11Q13.3) MUTATED     14    0
  AMP PEAK 16(11Q13.3) WILD-TYPE   60    3
   clus
vv  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  0                           14                             60
  1                            0                              3
                                vv
clus                             M0 M1 MX
  AMP PEAK 16(11Q13.3) MUTATED   17  1  3
  AMP PEAK 16(11Q13.3) WILD-TYPE 73  1 22
D16V6, multiclass
    clus
vv   AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  M0                           17                             73
  M1                            1                              1
  MX                            3                             22
D16V7, binary
                                cls
clus                              0  1
  AMP PEAK 16(11Q13.3) MUTATED    7 14
  AMP PEAK 16(11Q13.3) WILD-TYPE 37 59
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(11Q13.3) MUTATED      7   14
  AMP PEAK 16(11Q13.3) WILD-TYPE   37   59
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  FEMALE                            7                             37
  MALE                             14                             59
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 16(11Q13.3) MUTATED   15  4  1  1
  AMP PEAK 16(11Q13.3) WILD-TYPE 78  6  0  7
D16V8, multiclass
    clus
vv   AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  R0                           15                             78
  R1                            4                              6
  R2                            1                              0
  RX                            1                              7

Clustering(17) Variable = AMP PEAK 17(12Q23.1) MUTATION ANALYSIS
D17V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 17(12Q23.1) MUTATED   12  9
  AMP PEAK 17(12Q23.1) WILD-TYPE 49 44
  AMP PEAK 17(12Q23.1) MUTATED AMP PEAK 17(12Q23.1) WILD-TYPE 
                            21                             93 
  AMP PEAK 17(12Q23.1) MUTATED AMP PEAK 17(12Q23.1) WILD-TYPE 
                             9                             44 
$`AMP PEAK 17(12Q23.1) MUTATED`
TCGA-BC-A10T TCGA-BC-A216 TCGA-BC-A3KF TCGA-DD-A116 TCGA-DD-A119 TCGA-DD-A11A 
       27.52        44.42         0.26        53.29         7.33         2.60 
TCGA-DD-A11C TCGA-DD-A1EF TCGA-DD-A1EJ TCGA-DD-A39Y TCGA-DD-A3A1 TCGA-DD-A3A5 
       21.76        12.95        29.16         5.59         7.66       102.74 
TCGA-DD-A3A7 TCGA-DD-A4ND TCGA-DD-A4NH TCGA-EP-A2KA TCGA-EP-A3JL TCGA-FV-A3I0 
       13.78        73.38        14.24        11.74         3.19         0.20 
TCGA-FV-A496 TCGA-G3-A25T TCGA-G3-A25X 
        0.33        51.02        58.49 

$`AMP PEAK 17(12Q23.1) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10U 
       48.99        27.91        37.32        10.13        46.78        27.52 
TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 
        2.99        25.32        23.34         1.12        69.57         5.03 
TCGA-BC-A217 TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5261 
       13.81        16.37         9.50         0.07         2.86         3.02 
TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-CC-A3MB 
        3.39         4.24         3.32         0.10         0.07         0.10 
TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A118 TCGA-DD-A11B 
        0.13        79.73        37.74        83.57       112.96         0.46 
TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED 
       51.25        90.67        79.36        66.31        19.76        75.65 
TCGA-DD-A1EE TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39X 
        6.67        49.15         6.02        13.64        21.14        55.66 
TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A6 
       19.73        25.81        70.06        17.59        20.12       107.11 
TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4NE TCGA-DD-A4NF TCGA-DD-A4NG 
        0.36        30.58        33.14        21.67        14.07        14.93 
TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NO 
       10.78        15.06        39.75        56.25        29.56        61.45 
TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-ED-A459 TCGA-ED-A5KG TCGA-EP-A12J TCGA-EP-A26S 
       93.67        12.26         0.23         0.20        10.85         7.76 
TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A23B 
        1.97         0.62         0.43        23.01        14.40        32.45 
TCGA-FV-A2QR TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A4ZP TCGA-FV-A4ZQ 
       19.07         6.35         0.13         0.03        60.36         0.39 
TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Y TCGA-G3-A25Z 
        1.22        53.79        28.27        30.71        14.86        21.53 
TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SJ 
       22.13        25.64         5.88        19.53        19.23        11.97 
TCGA-G3-A5SK TCGA-G3-A5SL TCGA-G3-A5SM 
        9.93         7.99         4.37 

  AMP PEAK 17(12Q23.1) MUTATED AMP PEAK 17(12Q23.1) WILD-TYPE 
                          0.20                           0.03 
  AMP PEAK 17(12Q23.1) MUTATED AMP PEAK 17(12Q23.1) WILD-TYPE 
                        102.74                         112.96 
  AMP PEAK 17(12Q23.1) MUTATED AMP PEAK 17(12Q23.1) WILD-TYPE 
                         13.78                          17.59 
[1] "0.2 - 102.7 (13.8)" "0.0 - 113.0 (17.6)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 17(12Q23.1) WILD-TYPE"   "AMP PEAK 17(12Q23.1) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 17(12Q23.1) WILD-TYPE"   "AMP PEAK 17(12Q23.1) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 17(12Q23.1) WILD-TYPE"   "AMP PEAK 17(12Q23.1) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 17(12Q23.1) WILD-TYPE"   "AMP PEAK 17(12Q23.1) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 17(12Q23.1) WILD-TYPE"   "AMP PEAK 17(12Q23.1) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"AMP PEAK 17(12Q23.1) WILD-TYPE"   "AMP PEAK 17(12Q23.1) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 17(12Q23.1) WILD-TYPE"   "AMP PEAK 17(12Q23.1) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 17(12Q23.1) WILD-TYPE"   "AMP PEAK 17(12Q23.1) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 17(12Q23.1) WILD-TYPE"   "AMP PEAK 17(12Q23.1) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 17(12Q23.1) WILD-TYPE"   "AMP PEAK 17(12Q23.1) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 17(12Q23.1) WILD-TYPE"   "AMP PEAK 17(12Q23.1) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 17(12Q23.1) WILD-TYPE"   "AMP PEAK 17(12Q23.1) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 17(12Q23.1) WILD-TYPE"   "AMP PEAK 17(12Q23.1) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"AMP PEAK 17(12Q23.1) WILD-TYPE"   "AMP PEAK 17(12Q23.1) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 17(12Q23.1) WILD-TYPE"   "AMP PEAK 17(12Q23.1) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 17(12Q23.1) WILD-TYPE"   "AMP PEAK 17(12Q23.1) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 17(12Q23.1) WILD-TYPE"   "AMP PEAK 17(12Q23.1) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 17(12Q23.1) WILD-TYPE"   "AMP PEAK 17(12Q23.1) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 17(12Q23.1) WILD-TYPE"   "AMP PEAK 17(12Q23.1) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 17(12Q23.1) WILD-TYPE"   "AMP PEAK 17(12Q23.1) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 17(12Q23.1) WILD-TYPE"   "AMP PEAK 17(12Q23.1) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"AMP PEAK 17(12Q23.1) WILD-TYPE"   "AMP PEAK 17(12Q23.1) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 17(12Q23.1) WILD-TYPE"   "AMP PEAK 17(12Q23.1) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 17(12Q23.1) WILD-TYPE"   "AMP PEAK 17(12Q23.1) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "AMP PEAK 17(12Q23.1) MUTATED" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"AMP PEAK 17(12Q23.1) WILD-TYPE" "AMP PEAK 17(12Q23.1) WILD-TYPE" 
[1] "hr=" "1.1"
D17V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 17(12Q23.1) MUTATED         8        2         1          5
  AMP PEAK 17(12Q23.1) WILD-TYPE      37       23         1         20
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 17(12Q23.1) MUTATED            2          1        1         0
  AMP PEAK 17(12Q23.1) WILD-TYPE          1          3        0         1
                                vv
clus                             STAGE IVB
  AMP PEAK 17(12Q23.1) MUTATED           0
  AMP PEAK 17(12Q23.1) WILD-TYPE         1
D17V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 17(12Q23.1) MUTATED    9  2  9  1
  AMP PEAK 17(12Q23.1) WILD-TYPE 39 26 25  5
D17V4, multiclass
    clus
vv   AMP PEAK 17(12Q23.1) MUTATED AMP PEAK 17(12Q23.1) WILD-TYPE
  T1                            9                             39
  T2                            2                             26
  T3                            9                             25
  T4                            1                              5
D17V5, binary
                                cls
clus                              0  1
  AMP PEAK 17(12Q23.1) MUTATED   13  1
  AMP PEAK 17(12Q23.1) WILD-TYPE 61  2
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(12Q23.1) MUTATED     13    1
  AMP PEAK 17(12Q23.1) WILD-TYPE   61    2
   clus
vv  AMP PEAK 17(12Q23.1) MUTATED AMP PEAK 17(12Q23.1) WILD-TYPE
  0                           13                             61
  1                            1                              2
                                vv
clus                             M0 M1 MX
  AMP PEAK 17(12Q23.1) MUTATED   18  1  3
  AMP PEAK 17(12Q23.1) WILD-TYPE 72  1 22
D17V6, multiclass
    clus
vv   AMP PEAK 17(12Q23.1) MUTATED AMP PEAK 17(12Q23.1) WILD-TYPE
  M0                           18                             72
  M1                            1                              1
  MX                            3                             22
D17V7, binary
                                cls
clus                              0  1
  AMP PEAK 17(12Q23.1) MUTATED   11 11
  AMP PEAK 17(12Q23.1) WILD-TYPE 33 62
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(12Q23.1) MUTATED     11   11
  AMP PEAK 17(12Q23.1) WILD-TYPE   33   62
        clus
vv       AMP PEAK 17(12Q23.1) MUTATED AMP PEAK 17(12Q23.1) WILD-TYPE
  FEMALE                           11                             33
  MALE                             11                             62
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 17(12Q23.1) MUTATED   17  1  1  2
  AMP PEAK 17(12Q23.1) WILD-TYPE 76  9  0  6
D17V8, multiclass
    clus
vv   AMP PEAK 17(12Q23.1) MUTATED AMP PEAK 17(12Q23.1) WILD-TYPE
  R0                           17                             76
  R1                            1                              9
  R2                            1                              0
  RX                            2                              6

Clustering(18) Variable = AMP PEAK 18(13Q32.3) MUTATION ANALYSIS
D18V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 18(13Q32.3) MUTATED   13  9
  AMP PEAK 18(13Q32.3) WILD-TYPE 48 44
  AMP PEAK 18(13Q32.3) MUTATED AMP PEAK 18(13Q32.3) WILD-TYPE 
                            22                             92 
  AMP PEAK 18(13Q32.3) MUTATED AMP PEAK 18(13Q32.3) WILD-TYPE 
                             9                             44 
$`AMP PEAK 18(13Q32.3) MUTATED`
TCGA-BC-A10W TCGA-BC-A10Z TCGA-BC-A216 TCGA-BC-A3KF TCGA-CC-5258 TCGA-CC-5261 
        2.99         1.12        44.42         0.26         0.07         3.02 
TCGA-CC-5263 TCGA-CC-A3MA TCGA-DD-A113 TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1EJ 
        4.24         0.07        79.73         2.60        21.76        29.16 
TCGA-DD-A1EL TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A3A7 TCGA-DD-A4NI TCGA-EP-A2KA 
       13.64        55.66         5.59        13.78        10.78        11.74 
TCGA-EP-A3JL TCGA-FV-A23B TCGA-FV-A3I0 TCGA-FV-A496 
        3.19        32.45         0.20         0.33 

$`AMP PEAK 18(13Q32.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T 
       48.99        27.91        37.32        10.13        46.78        27.52 
TCGA-BC-A10U TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A217 
       27.52        25.32        23.34        69.57         5.03        13.81 
TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-CC-5260 TCGA-CC-5262 TCGA-CC-A1HT TCGA-CC-A3M9 
       16.37         9.50         2.86         3.39         3.32         0.10 
TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 
        0.10         0.13        37.74        83.57        53.29       112.96 
TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB 
        7.33         0.46        51.25        90.67        79.36        66.31 
TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EH TCGA-DD-A1EI 
       19.76        75.65         6.67        12.95        49.15         6.02 
TCGA-DD-A39V TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 
       21.14        19.73        25.81         7.66        70.06        17.59 
TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NA 
       20.12       102.74       107.11         0.36        30.58        33.14 
TCGA-DD-A4ND TCGA-DD-A4NE TCGA-DD-A4NF TCGA-DD-A4NG TCGA-DD-A4NH TCGA-DD-A4NJ 
       73.38        21.67        14.07        14.93        14.24        15.06 
TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A4NQ 
       39.75        56.25        29.56        61.45        93.67        12.26 
TCGA-ED-A459 TCGA-ED-A5KG TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KB TCGA-EP-A2KC 
        0.23         0.20        10.85         7.76         1.97         0.62 
TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R2 TCGA-FV-A3R3 
        0.43        23.01        14.40        19.07         6.35         0.13 
TCGA-FV-A495 TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25U 
        0.03        60.36         0.39         1.22        51.02        53.79 
TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG 
       28.27        30.71        58.49        14.86        21.53        22.13 
TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SK 
       25.64         5.88        19.53        19.23        11.97         9.93 
TCGA-G3-A5SL TCGA-G3-A5SM 
        7.99         4.37 

  AMP PEAK 18(13Q32.3) MUTATED AMP PEAK 18(13Q32.3) WILD-TYPE 
                          0.07                           0.03 
  AMP PEAK 18(13Q32.3) MUTATED AMP PEAK 18(13Q32.3) WILD-TYPE 
                         79.73                         112.96 
  AMP PEAK 18(13Q32.3) MUTATED AMP PEAK 18(13Q32.3) WILD-TYPE 
                         4.915                         19.630 
[1] "0.1 - 79.7 (4.9)"   "0.0 - 113.0 (19.6)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 18(13Q32.3) WILD-TYPE"   "AMP PEAK 18(13Q32.3) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 18(13Q32.3) WILD-TYPE"   "AMP PEAK 18(13Q32.3) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 18(13Q32.3) WILD-TYPE"   "AMP PEAK 18(13Q32.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK 18(13Q32.3) WILD-TYPE"   "AMP PEAK 18(13Q32.3) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"AMP PEAK 18(13Q32.3) WILD-TYPE"   "AMP PEAK 18(13Q32.3) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "AMP PEAK 18(13Q32.3) MUTATED"   "AMP PEAK 18(13Q32.3) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"AMP PEAK 18(13Q32.3) WILD-TYPE"   "AMP PEAK 18(13Q32.3) MUTATED" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 18(13Q32.3) WILD-TYPE"   "AMP PEAK 18(13Q32.3) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 18(13Q32.3) WILD-TYPE"   "AMP PEAK 18(13Q32.3) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 18(13Q32.3) WILD-TYPE"   "AMP PEAK 18(13Q32.3) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 18(13Q32.3) WILD-TYPE"   "AMP PEAK 18(13Q32.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK 18(13Q32.3) WILD-TYPE"   "AMP PEAK 18(13Q32.3) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"AMP PEAK 18(13Q32.3) WILD-TYPE"   "AMP PEAK 18(13Q32.3) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "AMP PEAK 18(13Q32.3) MUTATED"   "AMP PEAK 18(13Q32.3) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"AMP PEAK 18(13Q32.3) WILD-TYPE"   "AMP PEAK 18(13Q32.3) MUTATED" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 18(13Q32.3) WILD-TYPE"   "AMP PEAK 18(13Q32.3) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 18(13Q32.3) WILD-TYPE"   "AMP PEAK 18(13Q32.3) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 18(13Q32.3) WILD-TYPE"   "AMP PEAK 18(13Q32.3) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 18(13Q32.3) WILD-TYPE"   "AMP PEAK 18(13Q32.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK 18(13Q32.3) WILD-TYPE"   "AMP PEAK 18(13Q32.3) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"AMP PEAK 18(13Q32.3) WILD-TYPE"   "AMP PEAK 18(13Q32.3) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "AMP PEAK 18(13Q32.3) MUTATED"   "AMP PEAK 18(13Q32.3) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"AMP PEAK 18(13Q32.3) WILD-TYPE"   "AMP PEAK 18(13Q32.3) MUTATED" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 18(13Q32.3) WILD-TYPE"   "AMP PEAK 18(13Q32.3) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
  "AMP PEAK 18(13Q32.3) MUTATED" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"AMP PEAK 18(13Q32.3) WILD-TYPE" "AMP PEAK 18(13Q32.3) WILD-TYPE" 
[1] "hr=" "1.6"
D18V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 18(13Q32.3) MUTATED         8        7         0          4
  AMP PEAK 18(13Q32.3) WILD-TYPE      37       18         2         21
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 18(13Q32.3) MUTATED            1          1        0         0
  AMP PEAK 18(13Q32.3) WILD-TYPE          2          3        1         1
                                vv
clus                             STAGE IVB
  AMP PEAK 18(13Q32.3) MUTATED           0
  AMP PEAK 18(13Q32.3) WILD-TYPE         1
D18V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 18(13Q32.3) MUTATED    9  7  5  1
  AMP PEAK 18(13Q32.3) WILD-TYPE 39 21 29  5
D18V4, multiclass
    clus
vv   AMP PEAK 18(13Q32.3) MUTATED AMP PEAK 18(13Q32.3) WILD-TYPE
  T1                            9                             39
  T2                            7                             21
  T3                            5                             29
  T4                            1                              5
D18V5, binary
                                cls
clus                              0  1
  AMP PEAK 18(13Q32.3) MUTATED   11  1
  AMP PEAK 18(13Q32.3) WILD-TYPE 63  2
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 18(13Q32.3) MUTATED     11    1
  AMP PEAK 18(13Q32.3) WILD-TYPE   63    2
   clus
vv  AMP PEAK 18(13Q32.3) MUTATED AMP PEAK 18(13Q32.3) WILD-TYPE
  0                           11                             63
  1                            1                              2
                                vv
clus                             M0 M1 MX
  AMP PEAK 18(13Q32.3) MUTATED   18  0  4
  AMP PEAK 18(13Q32.3) WILD-TYPE 72  2 21
D18V6, multiclass
    clus
vv   AMP PEAK 18(13Q32.3) MUTATED AMP PEAK 18(13Q32.3) WILD-TYPE
  M0                           18                             72
  M1                            0                              2
  MX                            4                             21
D18V7, binary
                                cls
clus                              0  1
  AMP PEAK 18(13Q32.3) MUTATED   10 12
  AMP PEAK 18(13Q32.3) WILD-TYPE 34 61
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 18(13Q32.3) MUTATED     10   12
  AMP PEAK 18(13Q32.3) WILD-TYPE   34   61
        clus
vv       AMP PEAK 18(13Q32.3) MUTATED AMP PEAK 18(13Q32.3) WILD-TYPE
  FEMALE                           10                             34
  MALE                             12                             61
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 18(13Q32.3) MUTATED   16  1  0  4
  AMP PEAK 18(13Q32.3) WILD-TYPE 77  9  1  4
D18V8, multiclass
    clus
vv   AMP PEAK 18(13Q32.3) MUTATED AMP PEAK 18(13Q32.3) WILD-TYPE
  R0                           16                             77
  R1                            1                              9
  R2                            0                              1
  RX                            4                              4

Clustering(19) Variable = AMP PEAK 19(15Q26.3) MUTATION ANALYSIS
D19V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 19(15Q26.3) MUTATED   11  8
  AMP PEAK 19(15Q26.3) WILD-TYPE 50 45
  AMP PEAK 19(15Q26.3) MUTATED AMP PEAK 19(15Q26.3) WILD-TYPE 
                            19                             95 
  AMP PEAK 19(15Q26.3) MUTATED AMP PEAK 19(15Q26.3) WILD-TYPE 
                             8                             45 
$`AMP PEAK 19(15Q26.3) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10Y TCGA-BC-A217 TCGA-BC-A3KF TCGA-CC-5262 TCGA-CC-5263 
       37.32        23.34        13.81         0.26         3.39         4.24 
TCGA-CC-A3M9 TCGA-DD-A11A TCGA-DD-A39Z TCGA-DD-A4NE TCGA-DD-A4NI TCGA-DD-A4NJ 
        0.10         2.60        19.73        21.67        10.78        15.06 
TCGA-EP-A2KA TCGA-ES-A2HS TCGA-FV-A23B TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25Y 
       11.74        23.01        32.45         0.39        51.02        14.86 
TCGA-G3-A3CH 
       25.64 

$`AMP PEAK 19(15Q26.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U 
       48.99        27.91        10.13        46.78        27.52        27.52 
TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 
        2.99        25.32         1.12        69.57         5.03        44.42 
TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-A1HT 
       16.37         9.50         0.07         2.86         3.02         3.32 
TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A115 
        0.07         0.10         0.13        79.73        37.74        83.57 
TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D 
       53.29       112.96         7.33         0.46        21.76        51.25 
TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE 
       90.67        79.36        66.31        19.76        75.65         6.67 
TCGA-DD-A1EF TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39V 
       12.95        49.15         6.02        29.16        13.64        21.14 
TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 
       55.66         5.59        25.81         7.66        70.06        17.59 
TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A3A9 
       20.12       102.74       107.11        13.78         0.36        30.58 
TCGA-DD-A4NA TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NG TCGA-DD-A4NH TCGA-DD-A4NK 
       33.14        73.38        14.07        14.93        14.24        39.75 
TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-ED-A459 
       56.25        29.56        61.45        93.67        12.26         0.23 
TCGA-ED-A5KG TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL 
        0.20        10.85         7.76         1.97         0.62         3.19 
TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A3R3 
        0.43        14.40        19.07         0.20         6.35         0.13 
TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZP TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A25V 
        0.03         0.33        60.36         1.22        53.79        28.27 
TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CI TCGA-G3-A3CJ 
       30.71        58.49        21.53        22.13         5.88        19.53 
TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SK TCGA-G3-A5SL TCGA-G3-A5SM 
       19.23        11.97         9.93         7.99         4.37 

  AMP PEAK 19(15Q26.3) MUTATED AMP PEAK 19(15Q26.3) WILD-TYPE 
                          0.10                           0.03 
  AMP PEAK 19(15Q26.3) MUTATED AMP PEAK 19(15Q26.3) WILD-TYPE 
                         51.02                         112.96 
  AMP PEAK 19(15Q26.3) MUTATED AMP PEAK 19(15Q26.3) WILD-TYPE 
                         14.86                          17.59 
[1] "0.1 - 51.0 (14.9)"  "0.0 - 113.0 (17.6)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 19(15Q26.3) WILD-TYPE"   "AMP PEAK 19(15Q26.3) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 19(15Q26.3) MUTATED"   "AMP PEAK 19(15Q26.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK 19(15Q26.3) WILD-TYPE"   "AMP PEAK 19(15Q26.3) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"AMP PEAK 19(15Q26.3) WILD-TYPE"   "AMP PEAK 19(15Q26.3) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"AMP PEAK 19(15Q26.3) WILD-TYPE"   "AMP PEAK 19(15Q26.3) MUTATED" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 19(15Q26.3) WILD-TYPE"   "AMP PEAK 19(15Q26.3) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"AMP PEAK 19(15Q26.3) WILD-TYPE"   "AMP PEAK 19(15Q26.3) MUTATED" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 19(15Q26.3) WILD-TYPE"   "AMP PEAK 19(15Q26.3) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 19(15Q26.3) MUTATED"   "AMP PEAK 19(15Q26.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK 19(15Q26.3) WILD-TYPE"   "AMP PEAK 19(15Q26.3) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"AMP PEAK 19(15Q26.3) WILD-TYPE"   "AMP PEAK 19(15Q26.3) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"AMP PEAK 19(15Q26.3) WILD-TYPE"   "AMP PEAK 19(15Q26.3) MUTATED" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 19(15Q26.3) WILD-TYPE"   "AMP PEAK 19(15Q26.3) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"AMP PEAK 19(15Q26.3) WILD-TYPE"   "AMP PEAK 19(15Q26.3) MUTATED" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 19(15Q26.3) WILD-TYPE"   "AMP PEAK 19(15Q26.3) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 19(15Q26.3) MUTATED"   "AMP PEAK 19(15Q26.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK 19(15Q26.3) WILD-TYPE"   "AMP PEAK 19(15Q26.3) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"AMP PEAK 19(15Q26.3) WILD-TYPE"   "AMP PEAK 19(15Q26.3) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"AMP PEAK 19(15Q26.3) WILD-TYPE"   "AMP PEAK 19(15Q26.3) MUTATED" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 19(15Q26.3) WILD-TYPE"   "AMP PEAK 19(15Q26.3) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"AMP PEAK 19(15Q26.3) WILD-TYPE"   "AMP PEAK 19(15Q26.3) MUTATED" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
  "AMP PEAK 19(15Q26.3) MUTATED" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"AMP PEAK 19(15Q26.3) WILD-TYPE" "AMP PEAK 19(15Q26.3) WILD-TYPE" 
[1] "hr=" "1.4"
D19V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 19(15Q26.3) MUTATED         5        5         0          5
  AMP PEAK 19(15Q26.3) WILD-TYPE      40       20         2         20
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 19(15Q26.3) MUTATED            0          1        0         0
  AMP PEAK 19(15Q26.3) WILD-TYPE          3          3        1         1
                                vv
clus                             STAGE IVB
  AMP PEAK 19(15Q26.3) MUTATED           0
  AMP PEAK 19(15Q26.3) WILD-TYPE         1
D19V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 19(15Q26.3) MUTATED    5  6  5  2
  AMP PEAK 19(15Q26.3) WILD-TYPE 43 22 29  4
D19V4, multiclass
    clus
vv   AMP PEAK 19(15Q26.3) MUTATED AMP PEAK 19(15Q26.3) WILD-TYPE
  T1                            5                             43
  T2                            6                             22
  T3                            5                             29
  T4                            2                              4
D19V5, binary
                                cls
clus                              0  1
  AMP PEAK 19(15Q26.3) MUTATED   10  0
  AMP PEAK 19(15Q26.3) WILD-TYPE 64  3
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(15Q26.3) MUTATED     10    0
  AMP PEAK 19(15Q26.3) WILD-TYPE   64    3
   clus
vv  AMP PEAK 19(15Q26.3) MUTATED AMP PEAK 19(15Q26.3) WILD-TYPE
  0                           10                             64
  1                            0                              3
                                vv
clus                             M0 M1 MX
  AMP PEAK 19(15Q26.3) MUTATED   15  0  4
  AMP PEAK 19(15Q26.3) WILD-TYPE 75  2 21
D19V6, multiclass
    clus
vv   AMP PEAK 19(15Q26.3) MUTATED AMP PEAK 19(15Q26.3) WILD-TYPE
  M0                           15                             75
  M1                            0                              2
  MX                            4                             21
D19V7, binary
                                cls
clus                              0  1
  AMP PEAK 19(15Q26.3) MUTATED   10  9
  AMP PEAK 19(15Q26.3) WILD-TYPE 34 64
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(15Q26.3) MUTATED     10    9
  AMP PEAK 19(15Q26.3) WILD-TYPE   34   64
        clus
vv       AMP PEAK 19(15Q26.3) MUTATED AMP PEAK 19(15Q26.3) WILD-TYPE
  FEMALE                           10                             34
  MALE                              9                             64
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 19(15Q26.3) MUTATED   16  1  0  1
  AMP PEAK 19(15Q26.3) WILD-TYPE 77  9  1  7
D19V8, multiclass
    clus
vv   AMP PEAK 19(15Q26.3) MUTATED AMP PEAK 19(15Q26.3) WILD-TYPE
  R0                           16                             77
  R1                            1                              9
  R2                            0                              1
  RX                            1                              7

Clustering(20) Variable = AMP PEAK 20(17P11.2) MUTATION ANALYSIS
D20V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 20(17P11.2) MUTATED    9  8
  AMP PEAK 20(17P11.2) WILD-TYPE 52 45
  AMP PEAK 20(17P11.2) MUTATED AMP PEAK 20(17P11.2) WILD-TYPE 
                            17                             97 
  AMP PEAK 20(17P11.2) MUTATED AMP PEAK 20(17P11.2) WILD-TYPE 
                             8                             45 
$`AMP PEAK 20(17P11.2) MUTATED`
TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A3KF TCGA-CC-5260 TCGA-CC-A3M9 TCGA-DD-A115 
       27.91        37.32         0.26         2.86         0.10        83.57 
TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A3A3 TCGA-DD-A3A5 TCGA-DD-A3A7 TCGA-DD-A4NO 
        7.33         2.60        17.59       102.74        13.78        61.45 
TCGA-DD-A4NP TCGA-EP-A2KA TCGA-EP-A2KB TCGA-ES-A2HS TCGA-FV-A4ZP 
       93.67        11.74         1.97        23.01        60.36 

$`AMP PEAK 20(17P11.2) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W 
       48.99        10.13        46.78        27.52        27.52         2.99 
TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 
       25.32        23.34         1.12        69.57         5.03        44.42 
TCGA-BC-A217 TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-CC-5258 TCGA-CC-5261 TCGA-CC-5262 
       13.81        16.37         9.50         0.07         3.02         3.39 
TCGA-CC-5263 TCGA-CC-A1HT TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 
        4.24         3.32         0.07         0.10         0.13        79.73 
TCGA-DD-A114 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D 
       37.74        53.29       112.96         0.46        21.76        51.25 
TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE 
       90.67        79.36        66.31        19.76        75.65         6.67 
TCGA-DD-A1EF TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39V 
       12.95        49.15         6.02        29.16        13.64        21.14 
TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 
       55.66         5.59        19.73        25.81         7.66        70.06 
TCGA-DD-A3A4 TCGA-DD-A3A6 TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4ND 
       20.12       107.11         0.36        30.58        33.14        73.38 
TCGA-DD-A4NE TCGA-DD-A4NF TCGA-DD-A4NG TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ 
       21.67        14.07        14.93        14.24        10.78        15.06 
TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NQ TCGA-ED-A459 TCGA-ED-A5KG 
       39.75        56.25        29.56        12.26         0.23         0.20 
TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT 
       10.85         7.76         0.62         3.19         0.43        14.40 
TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A495 
       32.45        19.07         0.20         6.35         0.13         0.03 
TCGA-FV-A496 TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V 
        0.33         0.39         1.22        51.02        53.79        28.27 
TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH 
       30.71        58.49        14.86        21.53        22.13        25.64 
TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SK TCGA-G3-A5SL 
        5.88        19.53        19.23        11.97         9.93         7.99 
TCGA-G3-A5SM 
        4.37 

  AMP PEAK 20(17P11.2) MUTATED AMP PEAK 20(17P11.2) WILD-TYPE 
                          0.10                           0.03 
  AMP PEAK 20(17P11.2) MUTATED AMP PEAK 20(17P11.2) WILD-TYPE 
                        102.74                         112.96 
  AMP PEAK 20(17P11.2) MUTATED AMP PEAK 20(17P11.2) WILD-TYPE 
                         17.59                          15.06 
[1] "0.1 - 102.7 (17.6)" "0.0 - 113.0 (15.1)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 20(17P11.2) WILD-TYPE"   "AMP PEAK 20(17P11.2) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 20(17P11.2) MUTATED" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 20(17P11.2) WILD-TYPE"   "AMP PEAK 20(17P11.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 20(17P11.2) WILD-TYPE"   "AMP PEAK 20(17P11.2) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "AMP PEAK 20(17P11.2) MUTATED" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK 20(17P11.2) MUTATED" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 20(17P11.2) WILD-TYPE"   "AMP PEAK 20(17P11.2) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 20(17P11.2) MUTATED" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "AMP PEAK 20(17P11.2) MUTATED" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "AMP PEAK 20(17P11.2) MUTATED" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 20(17P11.2) MUTATED" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "AMP PEAK 20(17P11.2) MUTATED"   "AMP PEAK 20(17P11.2) MUTATED" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 20(17P11.2) WILD-TYPE"   "AMP PEAK 20(17P11.2) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK 20(17P11.2) MUTATED" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 20(17P11.2) MUTATED" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"AMP PEAK 20(17P11.2) WILD-TYPE"   "AMP PEAK 20(17P11.2) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 20(17P11.2) WILD-TYPE"   "AMP PEAK 20(17P11.2) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 20(17P11.2) MUTATED" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 20(17P11.2) WILD-TYPE"   "AMP PEAK 20(17P11.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 20(17P11.2) WILD-TYPE"   "AMP PEAK 20(17P11.2) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "AMP PEAK 20(17P11.2) MUTATED" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK 20(17P11.2) MUTATED" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 20(17P11.2) WILD-TYPE"   "AMP PEAK 20(17P11.2) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 20(17P11.2) MUTATED" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "AMP PEAK 20(17P11.2) MUTATED" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "AMP PEAK 20(17P11.2) MUTATED" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 20(17P11.2) MUTATED" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "AMP PEAK 20(17P11.2) MUTATED"   "AMP PEAK 20(17P11.2) MUTATED" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 20(17P11.2) WILD-TYPE"   "AMP PEAK 20(17P11.2) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK 20(17P11.2) MUTATED" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 20(17P11.2) MUTATED" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"AMP PEAK 20(17P11.2) WILD-TYPE"   "AMP PEAK 20(17P11.2) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 20(17P11.2) WILD-TYPE"   "AMP PEAK 20(17P11.2) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 20(17P11.2) MUTATED" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 20(17P11.2) WILD-TYPE"   "AMP PEAK 20(17P11.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 20(17P11.2) WILD-TYPE"   "AMP PEAK 20(17P11.2) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "AMP PEAK 20(17P11.2) MUTATED" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK 20(17P11.2) MUTATED" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 20(17P11.2) WILD-TYPE"   "AMP PEAK 20(17P11.2) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 20(17P11.2) MUTATED" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "AMP PEAK 20(17P11.2) MUTATED" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "AMP PEAK 20(17P11.2) MUTATED" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 20(17P11.2) MUTATED" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "AMP PEAK 20(17P11.2) MUTATED"   "AMP PEAK 20(17P11.2) MUTATED" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 20(17P11.2) WILD-TYPE"   "AMP PEAK 20(17P11.2) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK 20(17P11.2) MUTATED" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 20(17P11.2) MUTATED" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"AMP PEAK 20(17P11.2) WILD-TYPE"   "AMP PEAK 20(17P11.2) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"AMP PEAK 20(17P11.2) WILD-TYPE" "AMP PEAK 20(17P11.2) WILD-TYPE" 
[1] "hr=" "1.2"
D20V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 20(17P11.2) MUTATED         7        0         1          6
  AMP PEAK 20(17P11.2) WILD-TYPE      38       25         1         19
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 20(17P11.2) MUTATED            1          1        1         0
  AMP PEAK 20(17P11.2) WILD-TYPE          2          3        0         1
                                vv
clus                             STAGE IVB
  AMP PEAK 20(17P11.2) MUTATED           0
  AMP PEAK 20(17P11.2) WILD-TYPE         1
D20V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 20(17P11.2) MUTATED    7  1  9  1
  AMP PEAK 20(17P11.2) WILD-TYPE 41 27 25  5
D20V4, multiclass
    clus
vv   AMP PEAK 20(17P11.2) MUTATED AMP PEAK 20(17P11.2) WILD-TYPE
  T1                            7                             41
  T2                            1                             27
  T3                            9                             25
  T4                            1                              5
D20V5, binary
                                cls
clus                              0  1
  AMP PEAK 20(17P11.2) MUTATED   12  0
  AMP PEAK 20(17P11.2) WILD-TYPE 62  3
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(17P11.2) MUTATED     12    0
  AMP PEAK 20(17P11.2) WILD-TYPE   62    3
   clus
vv  AMP PEAK 20(17P11.2) MUTATED AMP PEAK 20(17P11.2) WILD-TYPE
  0                           12                             62
  1                            0                              3
                                vv
clus                             M0 M1 MX
  AMP PEAK 20(17P11.2) MUTATED   12  1  5
  AMP PEAK 20(17P11.2) WILD-TYPE 78  1 20
D20V6, multiclass
    clus
vv   AMP PEAK 20(17P11.2) MUTATED AMP PEAK 20(17P11.2) WILD-TYPE
  M0                           12                             78
  M1                            1                              1
  MX                            5                             20
D20V7, binary
                                cls
clus                              0  1
  AMP PEAK 20(17P11.2) MUTATED    6 12
  AMP PEAK 20(17P11.2) WILD-TYPE 38 61
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(17P11.2) MUTATED      6   12
  AMP PEAK 20(17P11.2) WILD-TYPE   38   61
        clus
vv       AMP PEAK 20(17P11.2) MUTATED AMP PEAK 20(17P11.2) WILD-TYPE
  FEMALE                            6                             38
  MALE                             12                             61
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 20(17P11.2) MUTATED   12  3  1  2
  AMP PEAK 20(17P11.2) WILD-TYPE 81  7  0  6
D20V8, multiclass
    clus
vv   AMP PEAK 20(17P11.2) MUTATED AMP PEAK 20(17P11.2) WILD-TYPE
  R0                           12                             81
  R1                            3                              7
  R2                            1                              0
  RX                            2                              6

Clustering(21) Variable = AMP PEAK 21(17Q23.1) MUTATION ANALYSIS
D21V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 21(17Q23.1) MUTATED   26 23
  AMP PEAK 21(17Q23.1) WILD-TYPE 35 30
  AMP PEAK 21(17Q23.1) MUTATED AMP PEAK 21(17Q23.1) WILD-TYPE 
                            49                             65 
  AMP PEAK 21(17Q23.1) MUTATED AMP PEAK 21(17Q23.1) WILD-TYPE 
                            23                             30 
$`AMP PEAK 21(17Q23.1) MUTATED`
TCGA-BC-4072 TCGA-BC-A10Q TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10Y TCGA-BC-A10Z 
       48.99        37.32        27.52         2.99        23.34         1.12 
TCGA-BC-A112 TCGA-BC-A217 TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5263 TCGA-CC-A3MC 
        5.03        13.81         2.86         3.02         4.24         0.13 
TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A1EA TCGA-DD-A1EB 
       37.74        83.57         7.33         2.60        79.36        66.31 
TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A39Y TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A7 
        6.02        29.16         5.59        17.59        20.12        13.78 
TCGA-DD-A3A9 TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NO TCGA-DD-A4NP 
       30.58        14.24        10.78        15.06        61.45        93.67 
TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-ES-A2HS TCGA-FV-A23B TCGA-FV-A2QR 
       11.74         1.97         0.62        23.01        32.45        19.07 
TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZP TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25U 
        0.03         0.33        60.36         1.22        51.02        53.79 
TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Z TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SJ 
       30.71        58.49        21.53        19.53        19.23        11.97 
TCGA-G3-A5SL 
        7.99 

$`AMP PEAK 21(17Q23.1) WILD-TYPE`
TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10X TCGA-BC-A110 
       27.91        10.13        46.78        27.52        25.32        69.57 
TCGA-BC-A216 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-CC-5258 TCGA-CC-5262 
       44.42         0.26        16.37         9.50         0.07         3.39 
TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-DD-A113 TCGA-DD-A116 
        3.32         0.10         0.07         0.10        79.73        53.29 
TCGA-DD-A118 TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EC 
      112.96         0.46        21.76        51.25        90.67        19.76 
TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EH TCGA-DD-A1EL TCGA-DD-A39V 
       75.65         6.67        12.95        49.15        13.64        21.14 
TCGA-DD-A39X TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A5 
       55.66        19.73        25.81         7.66        70.06       102.74 
TCGA-DD-A3A6 TCGA-DD-A3A8 TCGA-DD-A4NA TCGA-DD-A4ND TCGA-DD-A4NE TCGA-DD-A4NF 
      107.11         0.36        33.14        73.38        21.67        14.07 
TCGA-DD-A4NG TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NQ TCGA-ED-A459 
       14.93        39.75        56.25        29.56        12.26         0.23 
TCGA-ED-A5KG TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT 
        0.20        10.85         7.76         3.19         0.43        14.40 
TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A4ZQ TCGA-G3-A25V TCGA-G3-A25Y 
        0.20         6.35         0.13         0.39        28.27        14.86 
TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A5SK TCGA-G3-A5SM 
       22.13        25.64         5.88         9.93         4.37 

  AMP PEAK 21(17Q23.1) MUTATED AMP PEAK 21(17Q23.1) WILD-TYPE 
                          0.03                           0.07 
  AMP PEAK 21(17Q23.1) MUTATED AMP PEAK 21(17Q23.1) WILD-TYPE 
                         93.67                         112.96 
  AMP PEAK 21(17Q23.1) MUTATED AMP PEAK 21(17Q23.1) WILD-TYPE 
                         17.59                          14.93 
[1] "0.0 - 93.7 (17.6)"  "0.1 - 113.0 (14.9)"
                    TCGA-BC-4072                     TCGA-BC-4073 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "AMP PEAK 21(17Q23.1) MUTATED"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "AMP PEAK 21(17Q23.1) MUTATED"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "AMP PEAK 21(17Q23.1) MUTATED"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "AMP PEAK 21(17Q23.1) MUTATED"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "AMP PEAK 21(17Q23.1) MUTATED"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK 21(17Q23.1) MUTATED"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "AMP PEAK 21(17Q23.1) MUTATED"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
  "AMP PEAK 21(17Q23.1) MUTATED"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
  "AMP PEAK 21(17Q23.1) MUTATED"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
  "AMP PEAK 21(17Q23.1) MUTATED"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "AMP PEAK 21(17Q23.1) MUTATED"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "AMP PEAK 21(17Q23.1) MUTATED"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "AMP PEAK 21(17Q23.1) MUTATED"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "AMP PEAK 21(17Q23.1) MUTATED"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "AMP PEAK 21(17Q23.1) MUTATED"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK 21(17Q23.1) MUTATED"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "AMP PEAK 21(17Q23.1) MUTATED"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
  "AMP PEAK 21(17Q23.1) MUTATED"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
  "AMP PEAK 21(17Q23.1) MUTATED"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
  "AMP PEAK 21(17Q23.1) MUTATED"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "AMP PEAK 21(17Q23.1) MUTATED"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "AMP PEAK 21(17Q23.1) MUTATED"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "AMP PEAK 21(17Q23.1) MUTATED"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "AMP PEAK 21(17Q23.1) MUTATED"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "AMP PEAK 21(17Q23.1) MUTATED"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK 21(17Q23.1) MUTATED"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "AMP PEAK 21(17Q23.1) MUTATED"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
  "AMP PEAK 21(17Q23.1) MUTATED"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
  "AMP PEAK 21(17Q23.1) MUTATED"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 21(17Q23.1) WILD-TYPE"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 21(17Q23.1) WILD-TYPE" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
  "AMP PEAK 21(17Q23.1) MUTATED"   "AMP PEAK 21(17Q23.1) MUTATED" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
  "AMP PEAK 21(17Q23.1) MUTATED" "AMP PEAK 21(17Q23.1) WILD-TYPE" 
[1] "hr=" "1.2"
D21V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 21(17Q23.1) MUTATED        18       10         0          9
  AMP PEAK 21(17Q23.1) WILD-TYPE      27       15         2         16
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 21(17Q23.1) MUTATED            3          2        1         0
  AMP PEAK 21(17Q23.1) WILD-TYPE          0          2        0         1
                                vv
clus                             STAGE IVB
  AMP PEAK 21(17Q23.1) MUTATED           1
  AMP PEAK 21(17Q23.1) WILD-TYPE         0
D21V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 21(17Q23.1) MUTATED   19 12 14  4
  AMP PEAK 21(17Q23.1) WILD-TYPE 29 16 20  2
D21V4, multiclass
    clus
vv   AMP PEAK 21(17Q23.1) MUTATED AMP PEAK 21(17Q23.1) WILD-TYPE
  T1                           19                             29
  T2                           12                             16
  T3                           14                             20
  T4                            4                              2
D21V5, binary
                                cls
clus                              0  1
  AMP PEAK 21(17Q23.1) MUTATED   31  1
  AMP PEAK 21(17Q23.1) WILD-TYPE 43  2
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(17Q23.1) MUTATED     31    1
  AMP PEAK 21(17Q23.1) WILD-TYPE   43    2
   clus
vv  AMP PEAK 21(17Q23.1) MUTATED AMP PEAK 21(17Q23.1) WILD-TYPE
  0                           31                             43
  1                            1                              2
                                vv
clus                             M0 M1 MX
  AMP PEAK 21(17Q23.1) MUTATED   38  2 10
  AMP PEAK 21(17Q23.1) WILD-TYPE 52  0 15
D21V6, multiclass
    clus
vv   AMP PEAK 21(17Q23.1) MUTATED AMP PEAK 21(17Q23.1) WILD-TYPE
  M0                           38                             52
  M1                            2                              0
  MX                           10                             15
D21V7, binary
                                cls
clus                              0  1
  AMP PEAK 21(17Q23.1) MUTATED   18 32
  AMP PEAK 21(17Q23.1) WILD-TYPE 26 41
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(17Q23.1) MUTATED     18   32
  AMP PEAK 21(17Q23.1) WILD-TYPE   26   41
        clus
vv       AMP PEAK 21(17Q23.1) MUTATED AMP PEAK 21(17Q23.1) WILD-TYPE
  FEMALE                           18                             26
  MALE                             32                             41
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 21(17Q23.1) MUTATED   38  6  1  5
  AMP PEAK 21(17Q23.1) WILD-TYPE 55  4  0  3
D21V8, multiclass
    clus
vv   AMP PEAK 21(17Q23.1) MUTATED AMP PEAK 21(17Q23.1) WILD-TYPE
  R0                           38                             55
  R1                            6                              4
  R2                            1                              0
  RX                            5                              3

Clustering(22) Variable = AMP PEAK 22(17Q25.3) MUTATION ANALYSIS
D22V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 22(17Q25.3) MUTATED   25 28
  AMP PEAK 22(17Q25.3) WILD-TYPE 36 25
  AMP PEAK 22(17Q25.3) MUTATED AMP PEAK 22(17Q25.3) WILD-TYPE 
                            53                             61 
  AMP PEAK 22(17Q25.3) MUTATED AMP PEAK 22(17Q25.3) WILD-TYPE 
                            28                             25 
$`AMP PEAK 22(17Q25.3) MUTATED`
TCGA-BC-4072 TCGA-BC-A10Q TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10Y 
       48.99        37.32        27.52        27.52         2.99        23.34 
TCGA-BC-A10Z TCGA-BC-A112 TCGA-BC-A217 TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5263 
        1.12         5.03        13.81         2.86         3.02         4.24 
TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A119 
        0.10         0.13        37.74        83.57        53.29         7.33 
TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EI TCGA-DD-A1EJ 
        2.60        21.76        79.36        66.31         6.02        29.16 
TCGA-DD-A39Y TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 
        5.59        25.81         7.66        17.59        20.12       102.74 
TCGA-DD-A3A7 TCGA-DD-A3A9 TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NO 
       13.78        30.58        14.24        10.78        15.06        61.45 
TCGA-DD-A4NP TCGA-EP-A2KB TCGA-EP-A2KC TCGA-ES-A2HS TCGA-FV-A2QR TCGA-FV-A495 
       93.67         1.97         0.62        23.01        19.07         0.03 
TCGA-FV-A496 TCGA-FV-A4ZP TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A25W TCGA-G3-A25X 
        0.33        60.36         1.22        53.79        30.71        58.49 
TCGA-G3-A25Z TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SL 
       21.53        19.53        19.23        11.97         7.99 

$`AMP PEAK 22(17Q25.3) WILD-TYPE`
TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10X TCGA-BC-A110 TCGA-BC-A216 
       27.91        10.13        46.78        25.32        69.57        44.42 
TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-CC-5258 TCGA-CC-5262 TCGA-CC-A1HT 
        0.26        16.37         9.50         0.07         3.39         3.32 
TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-DD-A113 TCGA-DD-A118 TCGA-DD-A11B TCGA-DD-A11D 
        0.10         0.07        79.73       112.96         0.46        51.25 
TCGA-DD-A1E9 TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EH 
       90.67        19.76        75.65         6.67        12.95        49.15 
TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39X TCGA-DD-A39Z TCGA-DD-A3A2 TCGA-DD-A3A6 
       13.64        21.14        55.66        19.73        70.06       107.11 
TCGA-DD-A3A8 TCGA-DD-A4NA TCGA-DD-A4ND TCGA-DD-A4NE TCGA-DD-A4NF TCGA-DD-A4NG 
        0.36        33.14        73.38        21.67        14.07        14.93 
TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NQ TCGA-ED-A459 TCGA-ED-A5KG 
       39.75        56.25        29.56        12.26         0.23         0.20 
TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT 
       10.85         7.76        11.74         3.19         0.43        14.40 
TCGA-FV-A23B TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A4ZQ TCGA-G3-A25T 
       32.45         0.20         6.35         0.13         0.39        51.02 
TCGA-G3-A25V TCGA-G3-A25Y TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A5SK 
       28.27        14.86        22.13        25.64         5.88         9.93 
TCGA-G3-A5SM 
        4.37 

  AMP PEAK 22(17Q25.3) MUTATED AMP PEAK 22(17Q25.3) WILD-TYPE 
                          0.03                           0.07 
  AMP PEAK 22(17Q25.3) MUTATED AMP PEAK 22(17Q25.3) WILD-TYPE 
                        102.74                         112.96 
  AMP PEAK 22(17Q25.3) MUTATED AMP PEAK 22(17Q25.3) WILD-TYPE 
                         19.07                          14.86 
[1] "0.0 - 102.7 (19.1)" "0.1 - 113.0 (14.9)"
                    TCGA-BC-4072                     TCGA-BC-4073 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "AMP PEAK 22(17Q25.3) MUTATED"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "AMP PEAK 22(17Q25.3) MUTATED"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK 22(17Q25.3) MUTATED"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "AMP PEAK 22(17Q25.3) MUTATED"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "AMP PEAK 22(17Q25.3) MUTATED"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "AMP PEAK 22(17Q25.3) MUTATED"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "AMP PEAK 22(17Q25.3) MUTATED"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK 22(17Q25.3) MUTATED"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
  "AMP PEAK 22(17Q25.3) MUTATED"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
  "AMP PEAK 22(17Q25.3) MUTATED"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "AMP PEAK 22(17Q25.3) MUTATED"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "AMP PEAK 22(17Q25.3) MUTATED"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK 22(17Q25.3) MUTATED"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "AMP PEAK 22(17Q25.3) MUTATED"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "AMP PEAK 22(17Q25.3) MUTATED"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "AMP PEAK 22(17Q25.3) MUTATED"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "AMP PEAK 22(17Q25.3) MUTATED"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK 22(17Q25.3) MUTATED"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
  "AMP PEAK 22(17Q25.3) MUTATED"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
  "AMP PEAK 22(17Q25.3) MUTATED"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "AMP PEAK 22(17Q25.3) MUTATED"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "AMP PEAK 22(17Q25.3) MUTATED"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "AMP PEAK 22(17Q25.3) MUTATED"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "AMP PEAK 22(17Q25.3) MUTATED"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "AMP PEAK 22(17Q25.3) MUTATED"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "AMP PEAK 22(17Q25.3) MUTATED"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "AMP PEAK 22(17Q25.3) MUTATED"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "AMP PEAK 22(17Q25.3) MUTATED"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
  "AMP PEAK 22(17Q25.3) MUTATED"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"AMP PEAK 22(17Q25.3) WILD-TYPE"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"AMP PEAK 22(17Q25.3) WILD-TYPE" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
  "AMP PEAK 22(17Q25.3) MUTATED"   "AMP PEAK 22(17Q25.3) MUTATED" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
  "AMP PEAK 22(17Q25.3) MUTATED" "AMP PEAK 22(17Q25.3) WILD-TYPE" 
[1] "hr=" "1.4"
D22V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 22(17Q25.3) MUTATED        20        9         1         11
  AMP PEAK 22(17Q25.3) WILD-TYPE      25       16         1         14
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 22(17Q25.3) MUTATED            3          2        1         0
  AMP PEAK 22(17Q25.3) WILD-TYPE          0          2        0         1
                                vv
clus                             STAGE IVB
  AMP PEAK 22(17Q25.3) MUTATED           1
  AMP PEAK 22(17Q25.3) WILD-TYPE         0
D22V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 22(17Q25.3) MUTATED   21 11 17  5
  AMP PEAK 22(17Q25.3) WILD-TYPE 27 17 17  1
D22V4, multiclass
    clus
vv   AMP PEAK 22(17Q25.3) MUTATED AMP PEAK 22(17Q25.3) WILD-TYPE
  T1                           21                             27
  T2                           11                             17
  T3                           17                             17
  T4                            5                              1
D22V5, binary
                                cls
clus                              0  1
  AMP PEAK 22(17Q25.3) MUTATED   34  1
  AMP PEAK 22(17Q25.3) WILD-TYPE 40  2
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(17Q25.3) MUTATED     34    1
  AMP PEAK 22(17Q25.3) WILD-TYPE   40    2
   clus
vv  AMP PEAK 22(17Q25.3) MUTATED AMP PEAK 22(17Q25.3) WILD-TYPE
  0                           34                             40
  1                            1                              2
                                vv
clus                             M0 M1 MX
  AMP PEAK 22(17Q25.3) MUTATED   42  2 10
  AMP PEAK 22(17Q25.3) WILD-TYPE 48  0 15
D22V6, multiclass
    clus
vv   AMP PEAK 22(17Q25.3) MUTATED AMP PEAK 22(17Q25.3) WILD-TYPE
  M0                           42                             48
  M1                            2                              0
  MX                           10                             15
D22V7, binary
                                cls
clus                              0  1
  AMP PEAK 22(17Q25.3) MUTATED   16 38
  AMP PEAK 22(17Q25.3) WILD-TYPE 28 35
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(17Q25.3) MUTATED     16   38
  AMP PEAK 22(17Q25.3) WILD-TYPE   28   35
        clus
vv       AMP PEAK 22(17Q25.3) MUTATED AMP PEAK 22(17Q25.3) WILD-TYPE
  FEMALE                           16                             28
  MALE                             38                             35
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 22(17Q25.3) MUTATED   40  7  1  6
  AMP PEAK 22(17Q25.3) WILD-TYPE 53  3  0  2
D22V8, multiclass
    clus
vv   AMP PEAK 22(17Q25.3) MUTATED AMP PEAK 22(17Q25.3) WILD-TYPE
  R0                           40                             53
  R1                            7                              3
  R2                            1                              0
  RX                            6                              2

Clustering(23) Variable = AMP PEAK 23(19P13.12) MUTATION ANALYSIS
D23V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 23(19P13.12) MUTATED   15 15
  AMP PEAK 23(19P13.12) WILD-TYPE 46 38
  AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE 
                             30                              84 
  AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE 
                             15                              38 
$`AMP PEAK 23(19P13.12) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A112 TCGA-CC-5261 TCGA-CC-A3MC TCGA-DD-A113 
       37.32        10.13         5.03         3.02         0.13        79.73 
TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A1E9 TCGA-DD-A1EC TCGA-DD-A1EF TCGA-DD-A39V 
      112.96         7.33        90.67        19.76        12.95        21.14 
TCGA-DD-A39X TCGA-DD-A3A7 TCGA-DD-A3A9 TCGA-DD-A4ND TCGA-DD-A4NE TCGA-DD-A4NI 
       55.66        13.78        30.58        73.38        21.67        10.78 
TCGA-DD-A4NN TCGA-DD-A4NO TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL 
       29.56        61.45        11.74         1.97         0.62         3.19 
TCGA-ES-A2HS TCGA-FV-A3I0 TCGA-FV-A4ZP TCGA-G3-A25T TCGA-G3-A25X TCGA-G3-A5SM 
       23.01         0.20        60.36        51.02        58.49         4.37 

$`AMP PEAK 23(19P13.12) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W 
       48.99        27.91        46.78        27.52        27.52         2.99 
TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A216 TCGA-BC-A217 
       25.32        23.34         1.12        69.57        44.42        13.81 
TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5262 
        0.26        16.37         9.50         0.07         2.86         3.39 
TCGA-CC-5263 TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-DD-A114 
        4.24         3.32         0.10         0.07         0.10        37.74 
TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D 
       83.57        53.29         2.60         0.46        21.76        51.25 
TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EH TCGA-DD-A1EI 
       79.36        66.31        75.65         6.67        49.15         6.02 
TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 
       29.16        13.64         5.59        19.73        25.81         7.66 
TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A8 
       70.06        17.59        20.12       102.74       107.11         0.36 
TCGA-DD-A4NA TCGA-DD-A4NF TCGA-DD-A4NG TCGA-DD-A4NH TCGA-DD-A4NJ TCGA-DD-A4NK 
       33.14        14.07        14.93        14.24        15.06        39.75 
TCGA-DD-A4NL TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-ED-A459 TCGA-ED-A5KG TCGA-EP-A12J 
       56.25        93.67        12.26         0.23         0.20        10.85 
TCGA-EP-A26S TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3R2 
        7.76         0.43        14.40        32.45        19.07         6.35 
TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25U 
        0.13         0.03         0.33         0.39         1.22        53.79 
TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH 
       28.27        30.71        14.86        21.53        22.13        25.64 
TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SK TCGA-G3-A5SL 
        5.88        19.53        19.23        11.97         9.93         7.99 

  AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE 
                           0.13                            0.03 
  AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE 
                         112.96                          107.11 
  AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE 
                         20.450                          14.995 
[1] "0.1 - 113.0 (20.5)" "0.0 - 107.1 (15.0)"
                     TCGA-BC-4072                      TCGA-BC-4073 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "AMP PEAK 23(19P13.12) MUTATED"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-CC-5261                      TCGA-CC-5262 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"AMP PEAK 23(19P13.12) WILD-TYPE"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-DD-A113                      TCGA-DD-A114 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
  "AMP PEAK 23(19P13.12) MUTATED"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"AMP PEAK 23(19P13.12) WILD-TYPE"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EH 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A1EI                      TCGA-DD-A1EJ 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
"AMP PEAK 23(19P13.12) WILD-TYPE"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A4ND                      TCGA-DD-A4NE 
  "AMP PEAK 23(19P13.12) MUTATED"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NG 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A4NH                      TCGA-DD-A4NI 
"AMP PEAK 23(19P13.12) WILD-TYPE"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-DD-A4NJ                      TCGA-DD-A4NK 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A4NL                      TCGA-DD-A4NN 
"AMP PEAK 23(19P13.12) WILD-TYPE"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-DD-A4NO                      TCGA-DD-A4NP 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A4NQ                      TCGA-ED-A459 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-ED-A5KG                      TCGA-EP-A12J 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"AMP PEAK 23(19P13.12) WILD-TYPE"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
  "AMP PEAK 23(19P13.12) MUTATED"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-FV-A3I0                      TCGA-FV-A3R2 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-FV-A3R3                      TCGA-FV-A495 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-FV-A496                      TCGA-FV-A4ZP 
"AMP PEAK 23(19P13.12) WILD-TYPE"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-FV-A4ZQ                      TCGA-G3-A25S 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SK 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-G3-A5SL                      TCGA-G3-A5SM 
"AMP PEAK 23(19P13.12) WILD-TYPE"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "AMP PEAK 23(19P13.12) MUTATED"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-CC-5261                      TCGA-CC-5262 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"AMP PEAK 23(19P13.12) WILD-TYPE"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-DD-A113                      TCGA-DD-A114 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
  "AMP PEAK 23(19P13.12) MUTATED"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"AMP PEAK 23(19P13.12) WILD-TYPE"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EH 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A1EI                      TCGA-DD-A1EJ 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
"AMP PEAK 23(19P13.12) WILD-TYPE"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A4ND                      TCGA-DD-A4NE 
  "AMP PEAK 23(19P13.12) MUTATED"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NG 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A4NH                      TCGA-DD-A4NI 
"AMP PEAK 23(19P13.12) WILD-TYPE"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-DD-A4NJ                      TCGA-DD-A4NK 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A4NL                      TCGA-DD-A4NN 
"AMP PEAK 23(19P13.12) WILD-TYPE"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-DD-A4NO                      TCGA-DD-A4NP 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A4NQ                      TCGA-ED-A459 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-ED-A5KG                      TCGA-EP-A12J 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"AMP PEAK 23(19P13.12) WILD-TYPE"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
  "AMP PEAK 23(19P13.12) MUTATED"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-FV-A3I0                      TCGA-FV-A3R2 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-FV-A3R3                      TCGA-FV-A495 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-FV-A496                      TCGA-FV-A4ZP 
"AMP PEAK 23(19P13.12) WILD-TYPE"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-FV-A4ZQ                      TCGA-G3-A25S 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SK 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-G3-A5SL                      TCGA-G3-A5SM 
"AMP PEAK 23(19P13.12) WILD-TYPE"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "AMP PEAK 23(19P13.12) MUTATED"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-CC-5261                      TCGA-CC-5262 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"AMP PEAK 23(19P13.12) WILD-TYPE"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-DD-A113                      TCGA-DD-A114 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
  "AMP PEAK 23(19P13.12) MUTATED"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"AMP PEAK 23(19P13.12) WILD-TYPE"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EH 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A1EI                      TCGA-DD-A1EJ 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
"AMP PEAK 23(19P13.12) WILD-TYPE"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A4ND                      TCGA-DD-A4NE 
  "AMP PEAK 23(19P13.12) MUTATED"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NG 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A4NH                      TCGA-DD-A4NI 
"AMP PEAK 23(19P13.12) WILD-TYPE"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-DD-A4NJ                      TCGA-DD-A4NK 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A4NL                      TCGA-DD-A4NN 
"AMP PEAK 23(19P13.12) WILD-TYPE"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-DD-A4NO                      TCGA-DD-A4NP 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-DD-A4NQ                      TCGA-ED-A459 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-ED-A5KG                      TCGA-EP-A12J 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"AMP PEAK 23(19P13.12) WILD-TYPE"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
  "AMP PEAK 23(19P13.12) MUTATED"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-FV-A3I0                      TCGA-FV-A3R2 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-FV-A3R3                      TCGA-FV-A495 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-FV-A496                      TCGA-FV-A4ZP 
"AMP PEAK 23(19P13.12) WILD-TYPE"   "AMP PEAK 23(19P13.12) MUTATED" 
                     TCGA-FV-A4ZQ                      TCGA-G3-A25S 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
  "AMP PEAK 23(19P13.12) MUTATED" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SK 
"AMP PEAK 23(19P13.12) WILD-TYPE" "AMP PEAK 23(19P13.12) WILD-TYPE" 
                     TCGA-G3-A5SL                      TCGA-G3-A5SM 
"AMP PEAK 23(19P13.12) WILD-TYPE"   "AMP PEAK 23(19P13.12) MUTATED" 
[1] "hr=" "1.1"
D23V2, continuous
                                 vv
clus                              STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 23(19P13.12) MUTATED        11        9         0          4
  AMP PEAK 23(19P13.12) WILD-TYPE      34       16         2         21
                                 vv
clus                              STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 23(19P13.12) MUTATED            1          0        1         1
  AMP PEAK 23(19P13.12) WILD-TYPE          2          4        0         0
                                 vv
clus                              STAGE IVB
  AMP PEAK 23(19P13.12) MUTATED           1
  AMP PEAK 23(19P13.12) WILD-TYPE         0
D23V3, multiclass
                                 vv
clus                              T1 T2 T3 T4
  AMP PEAK 23(19P13.12) MUTATED   12 10  8  1
  AMP PEAK 23(19P13.12) WILD-TYPE 36 18 26  5
D23V4, multiclass
    clus
vv   AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE
  T1                            12                              36
  T2                            10                              18
  T3                             8                              26
  T4                             1                               5
D23V5, binary
                                 cls
clus                               0  1
  AMP PEAK 23(19P13.12) MUTATED   17  1
  AMP PEAK 23(19P13.12) WILD-TYPE 57  2
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 23(19P13.12) MUTATED     17    1
  AMP PEAK 23(19P13.12) WILD-TYPE   57    2
   clus
vv  AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE
  0                            17                              57
  1                             1                               2
                                 vv
clus                              M0 M1 MX
  AMP PEAK 23(19P13.12) MUTATED   20  2 10
  AMP PEAK 23(19P13.12) WILD-TYPE 70  0 15
D23V6, multiclass
    clus
vv   AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE
  M0                            20                              70
  M1                             2                               0
  MX                            10                              15
D23V7, binary
                                 cls
clus                               0  1
  AMP PEAK 23(19P13.12) MUTATED   16 16
  AMP PEAK 23(19P13.12) WILD-TYPE 28 57
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 23(19P13.12) MUTATED     16   16
  AMP PEAK 23(19P13.12) WILD-TYPE   28   57
        clus
vv       AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE
  FEMALE                            16                              28
  MALE                              16                              57
                                 vv
clus                              R0 R1 R2 RX
  AMP PEAK 23(19P13.12) MUTATED   27  2  1  1
  AMP PEAK 23(19P13.12) WILD-TYPE 66  8  0  7
D23V8, multiclass
    clus
vv   AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE
  R0                            27                              66
  R1                             2                               8
  R2                             1                               0
  RX                             1                               7

Clustering(24) Variable = AMP PEAK 24(19Q13.11) MUTATION ANALYSIS
D24V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 24(19Q13.11) MUTATED   19 18
  AMP PEAK 24(19Q13.11) WILD-TYPE 42 35
  AMP PEAK 24(19Q13.11) MUTATED AMP PEAK 24(19Q13.11) WILD-TYPE 
                             37                              77 
  AMP PEAK 24(19Q13.11) MUTATED AMP PEAK 24(19Q13.11) WILD-TYPE 
                             18                              35 
$`AMP PEAK 24(19Q13.11) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A112 
       37.32        10.13        27.52        23.34         1.12         5.03 
TCGA-BC-A217 TCGA-BC-A3KG TCGA-CC-5261 TCGA-CC-A3M9 TCGA-DD-A113 TCGA-DD-A118 
       13.81        16.37         3.02         0.10        79.73       112.96 
TCGA-DD-A119 TCGA-DD-A1E9 TCGA-DD-A1EC TCGA-DD-A1EF TCGA-DD-A1EI TCGA-DD-A1EL 
        7.33        90.67        19.76        12.95         6.02        13.64 
TCGA-DD-A39V TCGA-DD-A3A7 TCGA-DD-A3A9 TCGA-DD-A4ND TCGA-DD-A4NI TCGA-DD-A4NN 
       21.14        13.78        30.58        73.38        10.78        29.56 
TCGA-DD-A4NO TCGA-DD-A4NQ TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL 
       61.45        12.26        11.74         1.97         0.62         3.19 
TCGA-ES-A2HS TCGA-FV-A3I0 TCGA-FV-A495 TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25X 
       23.01         0.20         0.03         0.39        51.02        58.49 
TCGA-G3-A5SM 
        4.37 

$`AMP PEAK 24(19Q13.11) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X 
       48.99        27.91        46.78        27.52         2.99        25.32 
TCGA-BC-A110 TCGA-BC-A216 TCGA-BC-A3KF TCGA-BC-A5W4 TCGA-CC-5258 TCGA-CC-5260 
       69.57        44.42         0.26         9.50         0.07         2.86 
TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A1HT TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC 
        3.39         4.24         3.32         0.07         0.10         0.13 
TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C 
       37.74        83.57        53.29         2.60         0.46        21.76 
TCGA-DD-A11D TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EH 
       51.25        79.36        66.31        75.65         6.67        49.15 
TCGA-DD-A1EJ TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 
       29.16        55.66         5.59        19.73        25.81         7.66 
TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A8 
       70.06        17.59        20.12       102.74       107.11         0.36 
TCGA-DD-A4NA TCGA-DD-A4NE TCGA-DD-A4NF TCGA-DD-A4NG TCGA-DD-A4NH TCGA-DD-A4NJ 
       33.14        21.67        14.07        14.93        14.24        15.06 
TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NP TCGA-ED-A459 TCGA-ED-A5KG TCGA-EP-A12J 
       39.75        56.25        93.67         0.23         0.20        10.85 
TCGA-EP-A26S TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3R2 
        7.76         0.43        14.40        32.45        19.07         6.35 
TCGA-FV-A3R3 TCGA-FV-A496 TCGA-FV-A4ZP TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A25V 
        0.13         0.33        60.36         1.22        53.79        28.27 
TCGA-G3-A25W TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI 
       30.71        14.86        21.53        22.13        25.64         5.88 
TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SK TCGA-G3-A5SL 
       19.53        19.23        11.97         9.93         7.99 

  AMP PEAK 24(19Q13.11) MUTATED AMP PEAK 24(19Q13.11) WILD-TYPE 
                           0.03                            0.07 
  AMP PEAK 24(19Q13.11) MUTATED AMP PEAK 24(19Q13.11) WILD-TYPE 
                         112.96                          107.11 
  AMP PEAK 24(19Q13.11) MUTATED AMP PEAK 24(19Q13.11) WILD-TYPE 
                          13.64                           19.23 
[1] "0.0 - 113.0 (13.6)" "0.1 - 107.1 (19.2)"
                     TCGA-BC-4072                      TCGA-BC-4073 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "AMP PEAK 24(19Q13.11) MUTATED"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"AMP PEAK 24(19Q13.11) WILD-TYPE"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"AMP PEAK 24(19Q13.11) WILD-TYPE"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-CC-5261                      TCGA-CC-5262 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A113                      TCGA-DD-A114 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
  "AMP PEAK 24(19Q13.11) MUTATED"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"AMP PEAK 24(19Q13.11) WILD-TYPE"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EH 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1EI                      TCGA-DD-A1EJ 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
  "AMP PEAK 24(19Q13.11) MUTATED"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A4ND                      TCGA-DD-A4NE 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NG 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A4NH                      TCGA-DD-A4NI 
"AMP PEAK 24(19Q13.11) WILD-TYPE"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-DD-A4NJ                      TCGA-DD-A4NK 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A4NL                      TCGA-DD-A4NN 
"AMP PEAK 24(19Q13.11) WILD-TYPE"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-DD-A4NO                      TCGA-DD-A4NP 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A4NQ                      TCGA-ED-A459 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-ED-A5KG                      TCGA-EP-A12J 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"AMP PEAK 24(19Q13.11) WILD-TYPE"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
  "AMP PEAK 24(19Q13.11) MUTATED"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-FV-A3I0                      TCGA-FV-A3R2 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-FV-A3R3                      TCGA-FV-A495 
"AMP PEAK 24(19Q13.11) WILD-TYPE"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-FV-A496                      TCGA-FV-A4ZP 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-FV-A4ZQ                      TCGA-G3-A25S 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SK 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A5SL                      TCGA-G3-A5SM 
"AMP PEAK 24(19Q13.11) WILD-TYPE"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "AMP PEAK 24(19Q13.11) MUTATED"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"AMP PEAK 24(19Q13.11) WILD-TYPE"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"AMP PEAK 24(19Q13.11) WILD-TYPE"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-CC-5261                      TCGA-CC-5262 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A113                      TCGA-DD-A114 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
  "AMP PEAK 24(19Q13.11) MUTATED"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"AMP PEAK 24(19Q13.11) WILD-TYPE"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EH 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1EI                      TCGA-DD-A1EJ 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
  "AMP PEAK 24(19Q13.11) MUTATED"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A4ND                      TCGA-DD-A4NE 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NG 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A4NH                      TCGA-DD-A4NI 
"AMP PEAK 24(19Q13.11) WILD-TYPE"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-DD-A4NJ                      TCGA-DD-A4NK 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A4NL                      TCGA-DD-A4NN 
"AMP PEAK 24(19Q13.11) WILD-TYPE"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-DD-A4NO                      TCGA-DD-A4NP 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A4NQ                      TCGA-ED-A459 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-ED-A5KG                      TCGA-EP-A12J 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"AMP PEAK 24(19Q13.11) WILD-TYPE"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
  "AMP PEAK 24(19Q13.11) MUTATED"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-FV-A3I0                      TCGA-FV-A3R2 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-FV-A3R3                      TCGA-FV-A495 
"AMP PEAK 24(19Q13.11) WILD-TYPE"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-FV-A496                      TCGA-FV-A4ZP 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-FV-A4ZQ                      TCGA-G3-A25S 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SK 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A5SL                      TCGA-G3-A5SM 
"AMP PEAK 24(19Q13.11) WILD-TYPE"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "AMP PEAK 24(19Q13.11) MUTATED"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"AMP PEAK 24(19Q13.11) WILD-TYPE"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"AMP PEAK 24(19Q13.11) WILD-TYPE"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-CC-5261                      TCGA-CC-5262 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A113                      TCGA-DD-A114 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
  "AMP PEAK 24(19Q13.11) MUTATED"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"AMP PEAK 24(19Q13.11) WILD-TYPE"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EH 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1EI                      TCGA-DD-A1EJ 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
  "AMP PEAK 24(19Q13.11) MUTATED"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A4ND                      TCGA-DD-A4NE 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NG 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A4NH                      TCGA-DD-A4NI 
"AMP PEAK 24(19Q13.11) WILD-TYPE"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-DD-A4NJ                      TCGA-DD-A4NK 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A4NL                      TCGA-DD-A4NN 
"AMP PEAK 24(19Q13.11) WILD-TYPE"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-DD-A4NO                      TCGA-DD-A4NP 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A4NQ                      TCGA-ED-A459 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-ED-A5KG                      TCGA-EP-A12J 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"AMP PEAK 24(19Q13.11) WILD-TYPE"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
  "AMP PEAK 24(19Q13.11) MUTATED"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-FV-A3I0                      TCGA-FV-A3R2 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-FV-A3R3                      TCGA-FV-A495 
"AMP PEAK 24(19Q13.11) WILD-TYPE"   "AMP PEAK 24(19Q13.11) MUTATED" 
                     TCGA-FV-A496                      TCGA-FV-A4ZP 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-FV-A4ZQ                      TCGA-G3-A25S 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
  "AMP PEAK 24(19Q13.11) MUTATED" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SK 
"AMP PEAK 24(19Q13.11) WILD-TYPE" "AMP PEAK 24(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A5SL                      TCGA-G3-A5SM 
"AMP PEAK 24(19Q13.11) WILD-TYPE"   "AMP PEAK 24(19Q13.11) MUTATED" 
[1] "hr=" "1.2"
D24V2, continuous
                                 vv
clus                              STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 24(19Q13.11) MUTATED        13       13         0          2
  AMP PEAK 24(19Q13.11) WILD-TYPE      32       12         2         23
                                 vv
clus                              STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 24(19Q13.11) MUTATED            1          0        1         1
  AMP PEAK 24(19Q13.11) WILD-TYPE          2          4        0         0
                                 vv
clus                              STAGE IVB
  AMP PEAK 24(19Q13.11) MUTATED           1
  AMP PEAK 24(19Q13.11) WILD-TYPE         0
D24V3, multiclass
                                 vv
clus                              T1 T2 T3 T4
  AMP PEAK 24(19Q13.11) MUTATED   14 14  6  3
  AMP PEAK 24(19Q13.11) WILD-TYPE 34 14 28  3
D24V4, multiclass
    clus
vv   AMP PEAK 24(19Q13.11) MUTATED AMP PEAK 24(19Q13.11) WILD-TYPE
  T1                            14                              34
  T2                            14                              14
  T3                             6                              28
  T4                             3                               3
D24V5, binary
                                 cls
clus                               0  1
  AMP PEAK 24(19Q13.11) MUTATED   20  1
  AMP PEAK 24(19Q13.11) WILD-TYPE 54  2
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 24(19Q13.11) MUTATED     20    1
  AMP PEAK 24(19Q13.11) WILD-TYPE   54    2
   clus
vv  AMP PEAK 24(19Q13.11) MUTATED AMP PEAK 24(19Q13.11) WILD-TYPE
  0                            20                              54
  1                             1                               2
                                 vv
clus                              M0 M1 MX
  AMP PEAK 24(19Q13.11) MUTATED   24  2 12
  AMP PEAK 24(19Q13.11) WILD-TYPE 66  0 13
D24V6, multiclass
    clus
vv   AMP PEAK 24(19Q13.11) MUTATED AMP PEAK 24(19Q13.11) WILD-TYPE
  M0                            24                              66
  M1                             2                               0
  MX                            12                              13
D24V7, binary
                                 cls
clus                               0  1
  AMP PEAK 24(19Q13.11) MUTATED   17 21
  AMP PEAK 24(19Q13.11) WILD-TYPE 27 52
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 24(19Q13.11) MUTATED     17   21
  AMP PEAK 24(19Q13.11) WILD-TYPE   27   52
        clus
vv       AMP PEAK 24(19Q13.11) MUTATED AMP PEAK 24(19Q13.11) WILD-TYPE
  FEMALE                            17                              27
  MALE                              21                              52
                                 vv
clus                              R0 R1 R2 RX
  AMP PEAK 24(19Q13.11) MUTATED   33  2  1  1
  AMP PEAK 24(19Q13.11) WILD-TYPE 60  8  0  7
D24V8, multiclass
    clus
vv   AMP PEAK 24(19Q13.11) MUTATED AMP PEAK 24(19Q13.11) WILD-TYPE
  R0                            33                              60
  R1                             2                               8
  R2                             1                               0
  RX                             1                               7

Clustering(25) Variable = AMP PEAK 25(20Q13.33) MUTATION ANALYSIS
D25V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 25(20Q13.33) MUTATED   23 18
  AMP PEAK 25(20Q13.33) WILD-TYPE 38 35
  AMP PEAK 25(20Q13.33) MUTATED AMP PEAK 25(20Q13.33) WILD-TYPE 
                             41                              73 
  AMP PEAK 25(20Q13.33) MUTATED AMP PEAK 25(20Q13.33) WILD-TYPE 
                             18                              35 
$`AMP PEAK 25(20Q13.33) MUTATED`
TCGA-BC-4072 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10Y TCGA-BC-A217 TCGA-BC-A3KF 
       48.99        37.32        10.13        23.34        13.81         0.26 
TCGA-CC-5261 TCGA-CC-A3M9 TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A118 
        3.02         0.10         0.10         0.13        79.73       112.96 
TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A1EF TCGA-DD-A1EH 
        7.33         2.60         0.46        21.76        12.95        49.15 
TCGA-DD-A1EJ TCGA-DD-A39V TCGA-DD-A3A5 TCGA-DD-A3A7 TCGA-DD-A3A9 TCGA-DD-A4ND 
       29.16        21.14       102.74        13.78        30.58        73.38 
TCGA-DD-A4NE TCGA-DD-A4NG TCGA-DD-A4NI TCGA-DD-A4NN TCGA-DD-A4NO TCGA-EP-A2KA 
       21.67        14.93        10.78        29.56        61.45        11.74 
TCGA-EP-A2KB TCGA-EP-A3JL TCGA-ES-A2HS TCGA-FV-A23B TCGA-FV-A3R2 TCGA-FV-A496 
        1.97         3.19        23.01        32.45         6.35         0.33 
TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A5SM 
        0.39         1.22        30.71        58.49         4.37 

$`AMP PEAK 25(20Q13.33) WILD-TYPE`
TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X 
       27.91        46.78        27.52        27.52         2.99        25.32 
TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A3KG TCGA-BC-A5W4 
        1.12        69.57         5.03        44.42        16.37         9.50 
TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A1HT TCGA-CC-A3MA 
        0.07         2.86         3.39         4.24         3.32         0.07 
TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA 
       37.74        83.57        53.29        51.25        90.67        79.36 
TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EI TCGA-DD-A1EL 
       66.31        19.76        75.65         6.67         6.02        13.64 
TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 
       55.66         5.59        19.73        25.81         7.66        70.06 
TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A6 TCGA-DD-A3A8 TCGA-DD-A4NA TCGA-DD-A4NF 
       17.59        20.12       107.11         0.36        33.14        14.07 
TCGA-DD-A4NH TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NP TCGA-DD-A4NQ 
       14.24        15.06        39.75        56.25        93.67        12.26 
TCGA-ED-A459 TCGA-ED-A5KG TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KC TCGA-EP-A3RK 
        0.23         0.20        10.85         7.76         0.62         0.43 
TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A4ZP 
       14.40        19.07         0.20         0.13         0.03        60.36 
TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG 
       51.02        53.79        28.27        14.86        21.53        22.13 
TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SK 
       25.64         5.88        19.53        19.23        11.97         9.93 
TCGA-G3-A5SL 
        7.99 

  AMP PEAK 25(20Q13.33) MUTATED AMP PEAK 25(20Q13.33) WILD-TYPE 
                           0.10                            0.03 
  AMP PEAK 25(20Q13.33) MUTATED AMP PEAK 25(20Q13.33) WILD-TYPE 
                         112.96                          107.11 
  AMP PEAK 25(20Q13.33) MUTATED AMP PEAK 25(20Q13.33) WILD-TYPE 
                          13.81                           17.59 
[1] "0.1 - 113.0 (13.8)" "0.0 - 107.1 (17.6)"
                     TCGA-BC-4072                      TCGA-BC-4073 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "AMP PEAK 25(20Q13.33) MUTATED"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"AMP PEAK 25(20Q13.33) WILD-TYPE"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "AMP PEAK 25(20Q13.33) MUTATED"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-CC-5261                      TCGA-CC-5262 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
  "AMP PEAK 25(20Q13.33) MUTATED"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-DD-A113                      TCGA-DD-A114 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
  "AMP PEAK 25(20Q13.33) MUTATED"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
  "AMP PEAK 25(20Q13.33) MUTATED"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EH 
  "AMP PEAK 25(20Q13.33) MUTATED"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-DD-A1EI                      TCGA-DD-A1EJ 
"AMP PEAK 25(20Q13.33) WILD-TYPE"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
"AMP PEAK 25(20Q13.33) WILD-TYPE"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A4ND                      TCGA-DD-A4NE 
  "AMP PEAK 25(20Q13.33) MUTATED"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NG 
"AMP PEAK 25(20Q13.33) WILD-TYPE"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-DD-A4NH                      TCGA-DD-A4NI 
"AMP PEAK 25(20Q13.33) WILD-TYPE"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-DD-A4NJ                      TCGA-DD-A4NK 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A4NL                      TCGA-DD-A4NN 
"AMP PEAK 25(20Q13.33) WILD-TYPE"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-DD-A4NO                      TCGA-DD-A4NP 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A4NQ                      TCGA-ED-A459 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-ED-A5KG                      TCGA-EP-A12J 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"AMP PEAK 25(20Q13.33) WILD-TYPE"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-FV-A3I0                      TCGA-FV-A3R2 
"AMP PEAK 25(20Q13.33) WILD-TYPE"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-FV-A3R3                      TCGA-FV-A495 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-FV-A496                      TCGA-FV-A4ZP 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-FV-A4ZQ                      TCGA-G3-A25S 
  "AMP PEAK 25(20Q13.33) MUTATED"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"AMP PEAK 25(20Q13.33) WILD-TYPE"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SK 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A5SL                      TCGA-G3-A5SM 
"AMP PEAK 25(20Q13.33) WILD-TYPE"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-BC-4072                      TCGA-BC-4073 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "AMP PEAK 25(20Q13.33) MUTATED"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"AMP PEAK 25(20Q13.33) WILD-TYPE"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "AMP PEAK 25(20Q13.33) MUTATED"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-CC-5261                      TCGA-CC-5262 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
  "AMP PEAK 25(20Q13.33) MUTATED"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-DD-A113                      TCGA-DD-A114 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
  "AMP PEAK 25(20Q13.33) MUTATED"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
  "AMP PEAK 25(20Q13.33) MUTATED"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EH 
  "AMP PEAK 25(20Q13.33) MUTATED"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-DD-A1EI                      TCGA-DD-A1EJ 
"AMP PEAK 25(20Q13.33) WILD-TYPE"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
"AMP PEAK 25(20Q13.33) WILD-TYPE"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A4ND                      TCGA-DD-A4NE 
  "AMP PEAK 25(20Q13.33) MUTATED"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NG 
"AMP PEAK 25(20Q13.33) WILD-TYPE"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-DD-A4NH                      TCGA-DD-A4NI 
"AMP PEAK 25(20Q13.33) WILD-TYPE"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-DD-A4NJ                      TCGA-DD-A4NK 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A4NL                      TCGA-DD-A4NN 
"AMP PEAK 25(20Q13.33) WILD-TYPE"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-DD-A4NO                      TCGA-DD-A4NP 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A4NQ                      TCGA-ED-A459 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-ED-A5KG                      TCGA-EP-A12J 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"AMP PEAK 25(20Q13.33) WILD-TYPE"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-FV-A3I0                      TCGA-FV-A3R2 
"AMP PEAK 25(20Q13.33) WILD-TYPE"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-FV-A3R3                      TCGA-FV-A495 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-FV-A496                      TCGA-FV-A4ZP 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-FV-A4ZQ                      TCGA-G3-A25S 
  "AMP PEAK 25(20Q13.33) MUTATED"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"AMP PEAK 25(20Q13.33) WILD-TYPE"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SK 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A5SL                      TCGA-G3-A5SM 
"AMP PEAK 25(20Q13.33) WILD-TYPE"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-BC-4072                      TCGA-BC-4073 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "AMP PEAK 25(20Q13.33) MUTATED"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"AMP PEAK 25(20Q13.33) WILD-TYPE"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "AMP PEAK 25(20Q13.33) MUTATED"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-CC-5261                      TCGA-CC-5262 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
  "AMP PEAK 25(20Q13.33) MUTATED"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-DD-A113                      TCGA-DD-A114 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
  "AMP PEAK 25(20Q13.33) MUTATED"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
  "AMP PEAK 25(20Q13.33) MUTATED"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EH 
  "AMP PEAK 25(20Q13.33) MUTATED"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-DD-A1EI                      TCGA-DD-A1EJ 
"AMP PEAK 25(20Q13.33) WILD-TYPE"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
"AMP PEAK 25(20Q13.33) WILD-TYPE"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A4ND                      TCGA-DD-A4NE 
  "AMP PEAK 25(20Q13.33) MUTATED"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NG 
"AMP PEAK 25(20Q13.33) WILD-TYPE"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-DD-A4NH                      TCGA-DD-A4NI 
"AMP PEAK 25(20Q13.33) WILD-TYPE"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-DD-A4NJ                      TCGA-DD-A4NK 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A4NL                      TCGA-DD-A4NN 
"AMP PEAK 25(20Q13.33) WILD-TYPE"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-DD-A4NO                      TCGA-DD-A4NP 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-DD-A4NQ                      TCGA-ED-A459 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-ED-A5KG                      TCGA-EP-A12J 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"AMP PEAK 25(20Q13.33) WILD-TYPE"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-FV-A3I0                      TCGA-FV-A3R2 
"AMP PEAK 25(20Q13.33) WILD-TYPE"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-FV-A3R3                      TCGA-FV-A495 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-FV-A496                      TCGA-FV-A4ZP 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-FV-A4ZQ                      TCGA-G3-A25S 
  "AMP PEAK 25(20Q13.33) MUTATED"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"AMP PEAK 25(20Q13.33) WILD-TYPE"   "AMP PEAK 25(20Q13.33) MUTATED" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
  "AMP PEAK 25(20Q13.33) MUTATED" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SK 
"AMP PEAK 25(20Q13.33) WILD-TYPE" "AMP PEAK 25(20Q13.33) WILD-TYPE" 
                     TCGA-G3-A5SL                      TCGA-G3-A5SM 
"AMP PEAK 25(20Q13.33) WILD-TYPE"   "AMP PEAK 25(20Q13.33) MUTATED" 
[1] "hr=" "1.1"
D25V2, continuous
                                 vv
clus                              STAGE I STAGE II STAGE III STAGE IIIA
  AMP PEAK 25(20Q13.33) MUTATED        15        9         2          8
  AMP PEAK 25(20Q13.33) WILD-TYPE      30       16         0         17
                                 vv
clus                              STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 25(20Q13.33) MUTATED            2          1        1         1
  AMP PEAK 25(20Q13.33) WILD-TYPE          1          3        0         0
                                 vv
clus                              STAGE IVB
  AMP PEAK 25(20Q13.33) MUTATED           1
  AMP PEAK 25(20Q13.33) WILD-TYPE         0
D25V3, multiclass
                                 vv
clus                              T1 T2 T3 T4
  AMP PEAK 25(20Q13.33) MUTATED   17 10 14  2
  AMP PEAK 25(20Q13.33) WILD-TYPE 31 18 20  4
D25V4, multiclass
    clus
vv   AMP PEAK 25(20Q13.33) MUTATED AMP PEAK 25(20Q13.33) WILD-TYPE
  T1                            17                              31
  T2                            10                              18
  T3                            14                              20
  T4                             2                               4
D25V5, binary
                                 cls
clus                               0  1
  AMP PEAK 25(20Q13.33) MUTATED   25  2
  AMP PEAK 25(20Q13.33) WILD-TYPE 49  1
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 25(20Q13.33) MUTATED     25    2
  AMP PEAK 25(20Q13.33) WILD-TYPE   49    1
   clus
vv  AMP PEAK 25(20Q13.33) MUTATED AMP PEAK 25(20Q13.33) WILD-TYPE
  0                            25                              49
  1                             2                               1
                                 vv
clus                              M0 M1 MX
  AMP PEAK 25(20Q13.33) MUTATED   32  2  9
  AMP PEAK 25(20Q13.33) WILD-TYPE 58  0 16
D25V6, multiclass
    clus
vv   AMP PEAK 25(20Q13.33) MUTATED AMP PEAK 25(20Q13.33) WILD-TYPE
  M0                            32                              58
  M1                             2                               0
  MX                             9                              16
D25V7, binary
                                 cls
clus                               0  1
  AMP PEAK 25(20Q13.33) MUTATED   19 24
  AMP PEAK 25(20Q13.33) WILD-TYPE 25 49
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 25(20Q13.33) MUTATED     19   24
  AMP PEAK 25(20Q13.33) WILD-TYPE   25   49
        clus
vv       AMP PEAK 25(20Q13.33) MUTATED AMP PEAK 25(20Q13.33) WILD-TYPE
  FEMALE                            19                              25
  MALE                              24                              49
                                 vv
clus                              R0 R1 R2 RX
  AMP PEAK 25(20Q13.33) MUTATED   34  3  1  4
  AMP PEAK 25(20Q13.33) WILD-TYPE 59  7  0  4
D25V8, multiclass
    clus
vv   AMP PEAK 25(20Q13.33) MUTATED AMP PEAK 25(20Q13.33) WILD-TYPE
  R0                            34                              59
  R1                             3                               7
  R2                             1                               0
  RX                             4                               4

Clustering(26) Variable = DEL PEAK  1(1P36.32) MUTATION ANALYSIS
D26V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  1(1P36.32) MUTATED   26 27
  DEL PEAK  1(1P36.32) WILD-TYPE 35 26
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            53                             61 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            27                             26 
$`DEL PEAK  1(1P36.32) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10W TCGA-BC-A10Y TCGA-BC-A217 
       37.32        46.78        27.52         2.99        23.34        13.81 
TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A3MA TCGA-CC-A3MB 
        2.86         3.02         3.39         4.24         0.07         0.10 
TCGA-DD-A113 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B 
       79.73        53.29       112.96         7.33         2.60         0.46 
TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EB TCGA-DD-A1EF TCGA-DD-A1EH 
       21.76        51.25        90.67        66.31        12.95        49.15 
TCGA-DD-A1EJ TCGA-DD-A39X TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A9 
       29.16        55.66        19.73        25.81         7.66        30.58 
TCGA-DD-A4NG TCGA-DD-A4NH TCGA-DD-A4NJ TCGA-DD-A4NN TCGA-DD-A4NO TCGA-EP-A2KB 
       14.93        14.24        15.06        29.56        61.45         1.97 
TCGA-EP-A2KC TCGA-EP-A3RK TCGA-ES-A2HS TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 
        0.62         0.43        23.01        32.45        19.07         0.20 
TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZP TCGA-G3-A25S TCGA-G3-A25V 
        0.13         0.03         0.33        60.36         1.22        28.27 
TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A5SL TCGA-G3-A5SM 
       30.71        58.49        14.86         7.99         4.37 

$`DEL PEAK  1(1P36.32) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10U TCGA-BC-A10X TCGA-BC-A10Z 
       48.99        27.91        10.13        27.52        25.32         1.12 
TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A5W4 
       69.57         5.03        44.42         0.26        16.37         9.50 
TCGA-CC-5258 TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A115 
        0.07         3.32         0.10         0.13        37.74        83.57 
TCGA-DD-A1EA TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EI TCGA-DD-A1EL 
       79.36        19.76        75.65         6.67         6.02        13.64 
TCGA-DD-A39V TCGA-DD-A39Y TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 
       21.14         5.59        70.06        17.59        20.12       102.74 
TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A4NA TCGA-DD-A4ND TCGA-DD-A4NE 
      107.11        13.78         0.36        33.14        73.38        21.67 
TCGA-DD-A4NF TCGA-DD-A4NI TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NP TCGA-DD-A4NQ 
       14.07        10.78        39.75        56.25        93.67        12.26 
TCGA-ED-A459 TCGA-ED-A5KG TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A3JL 
        0.23         0.20        10.85         7.76        11.74         3.19 
TCGA-ES-A2HT TCGA-FV-A3R2 TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25Z 
       14.40         6.35         0.39        51.02        53.79        21.53 
TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SJ 
       22.13        25.64         5.88        19.53        19.23        11.97 
TCGA-G3-A5SK 
        9.93 

  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                          0.03                           0.07 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                        112.96                         107.11 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                         15.06                          16.37 
[1] "0.0 - 113.0 (15.1)" "0.1 - 107.1 (16.4)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
[1] "hr=" "1.3"
D26V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK  1(1P36.32) MUTATED        20       11         1          9
  DEL PEAK  1(1P36.32) WILD-TYPE      25       14         1         16
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK  1(1P36.32) MUTATED            2          3        1         1
  DEL PEAK  1(1P36.32) WILD-TYPE          1          1        0         0
                                vv
clus                             STAGE IVB
  DEL PEAK  1(1P36.32) MUTATED           1
  DEL PEAK  1(1P36.32) WILD-TYPE         0
D26V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK  1(1P36.32) MUTATED   22 12 14  6
  DEL PEAK  1(1P36.32) WILD-TYPE 26 16 20  0
D26V4, multiclass
    clus
vv   DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  T1                           22                             26
  T2                           12                             16
  T3                           14                             20
  T4                            6                              0
D26V5, binary
                                cls
clus                              0  1
  DEL PEAK  1(1P36.32) MUTATED   31  2
  DEL PEAK  1(1P36.32) WILD-TYPE 43  1
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.32) MUTATED     31    2
  DEL PEAK  1(1P36.32) WILD-TYPE   43    1
   clus
vv  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  0                           31                             43
  1                            2                              1
                                vv
clus                             M0 M1 MX
  DEL PEAK  1(1P36.32) MUTATED   41  2 11
  DEL PEAK  1(1P36.32) WILD-TYPE 49  0 14
D26V6, multiclass
    clus
vv   DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  M0                           41                             49
  M1                            2                              0
  MX                           11                             14
D26V7, binary
                                cls
clus                              0  1
  DEL PEAK  1(1P36.32) MUTATED   23 31
  DEL PEAK  1(1P36.32) WILD-TYPE 21 42
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.32) MUTATED     23   31
  DEL PEAK  1(1P36.32) WILD-TYPE   21   42
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  FEMALE                           23                             21
  MALE                             31                             42
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK  1(1P36.32) MUTATED   40  5  1  6
  DEL PEAK  1(1P36.32) WILD-TYPE 53  5  0  2
D26V8, multiclass
    clus
vv   DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  R0                           40                             53
  R1                            5                              5
  R2                            1                              0
  RX                            6                              2

Clustering(27) Variable = DEL PEAK  2(1P35.2) MUTATION ANALYSIS
D27V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  2(1P35.2) MUTATED   22 21
  DEL PEAK  2(1P35.2) WILD-TYPE 39 32
  DEL PEAK  2(1P35.2) MUTATED DEL PEAK  2(1P35.2) WILD-TYPE 
                           43                            71 
  DEL PEAK  2(1P35.2) MUTATED DEL PEAK  2(1P35.2) WILD-TYPE 
                           21                            32 
$`DEL PEAK  2(1P35.2) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10W TCGA-BC-A112 TCGA-CC-5258 
       37.32        46.78        27.52         2.99         5.03         0.07 
TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-DD-A113 TCGA-DD-A116 
        2.86         3.02         0.07         0.10        79.73        53.29 
TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A1E9 TCGA-DD-A1EH 
      112.96         7.33         2.60         0.46        90.67        49.15 
TCGA-DD-A1EJ TCGA-DD-A39V TCGA-DD-A39X TCGA-DD-A3A1 TCGA-DD-A3A9 TCGA-DD-A4NA 
       29.16        21.14        55.66         7.66        30.58        33.14 
TCGA-DD-A4NG TCGA-DD-A4NH TCGA-DD-A4NJ TCGA-DD-A4NN TCGA-DD-A4NO TCGA-EP-A2KB 
       14.93        14.24        15.06        29.56        61.45         1.97 
TCGA-EP-A2KC TCGA-EP-A3RK TCGA-ES-A2HS TCGA-FV-A23B TCGA-FV-A3I0 TCGA-FV-A3R3 
        0.62         0.43        23.01        32.45         0.20         0.13 
TCGA-FV-A496 TCGA-FV-A4ZP TCGA-G3-A25S TCGA-G3-A25W TCGA-G3-A25Y TCGA-G3-A5SL 
        0.33        60.36         1.22        30.71        14.86         7.99 
TCGA-G3-A5SM 
        4.37 

$`DEL PEAK  2(1P35.2) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10U TCGA-BC-A10X TCGA-BC-A10Y 
       48.99        27.91        10.13        27.52        25.32        23.34 
TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG 
        1.12        69.57        44.42        13.81         0.26        16.37 
TCGA-BC-A5W4 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MC 
        9.50         3.39         4.24         3.32         0.10         0.13 
TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1EA TCGA-DD-A1EB 
       37.74        83.57        21.76        51.25        79.36        66.31 
TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EI TCGA-DD-A1EL 
       19.76        75.65         6.67        12.95         6.02        13.64 
TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 
        5.59        19.73        25.81        70.06        17.59        20.12 
TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A4ND TCGA-DD-A4NE 
      102.74       107.11        13.78         0.36        73.38        21.67 
TCGA-DD-A4NF TCGA-DD-A4NI TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NP TCGA-DD-A4NQ 
       14.07        10.78        39.75        56.25        93.67        12.26 
TCGA-ED-A459 TCGA-ED-A5KG TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A3JL 
        0.23         0.20        10.85         7.76        11.74         3.19 
TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R2 TCGA-FV-A495 TCGA-FV-A4ZQ TCGA-G3-A25T 
       14.40        19.07         6.35         0.03         0.39        51.02 
TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25X TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH 
       53.79        28.27        58.49        21.53        22.13        25.64 
TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SK 
        5.88        19.53        19.23        11.97         9.93 

  DEL PEAK  2(1P35.2) MUTATED DEL PEAK  2(1P35.2) WILD-TYPE 
                         0.07                          0.03 
  DEL PEAK  2(1P35.2) MUTATED DEL PEAK  2(1P35.2) WILD-TYPE 
                       112.96                        107.11 
  DEL PEAK  2(1P35.2) MUTATED DEL PEAK  2(1P35.2) WILD-TYPE 
                        14.86                         19.07 
[1] "0.1 - 113.0 (14.9)" "0.0 - 107.1 (19.1)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK  2(1P35.2) MUTATED"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "DEL PEAK  2(1P35.2) MUTATED"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "DEL PEAK  2(1P35.2) MUTATED"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK  2(1P35.2) MUTATED"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "DEL PEAK  2(1P35.2) MUTATED"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "DEL PEAK  2(1P35.2) MUTATED"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
  "DEL PEAK  2(1P35.2) MUTATED"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
  "DEL PEAK  2(1P35.2) MUTATED"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK  2(1P35.2) MUTATED"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "DEL PEAK  2(1P35.2) MUTATED"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "DEL PEAK  2(1P35.2) MUTATED"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK  2(1P35.2) MUTATED"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "DEL PEAK  2(1P35.2) MUTATED"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "DEL PEAK  2(1P35.2) MUTATED"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
  "DEL PEAK  2(1P35.2) MUTATED"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
  "DEL PEAK  2(1P35.2) MUTATED"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK  2(1P35.2) MUTATED"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "DEL PEAK  2(1P35.2) MUTATED"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "DEL PEAK  2(1P35.2) MUTATED"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK  2(1P35.2) MUTATED"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "DEL PEAK  2(1P35.2) MUTATED"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "DEL PEAK  2(1P35.2) MUTATED"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
  "DEL PEAK  2(1P35.2) MUTATED" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
  "DEL PEAK  2(1P35.2) MUTATED"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK  2(1P35.2) WILD-TYPE"   "DEL PEAK  2(1P35.2) MUTATED" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"DEL PEAK  2(1P35.2) WILD-TYPE" "DEL PEAK  2(1P35.2) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
  "DEL PEAK  2(1P35.2) MUTATED"   "DEL PEAK  2(1P35.2) MUTATED" 
[1] "hr=" "1.2"
D27V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK  2(1P35.2) MUTATED        13        9         1          8
  DEL PEAK  2(1P35.2) WILD-TYPE      32       16         1         17
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK  2(1P35.2) MUTATED            2          3        1         1
  DEL PEAK  2(1P35.2) WILD-TYPE          1          1        0         0
                               vv
clus                            STAGE IVB
  DEL PEAK  2(1P35.2) MUTATED           1
  DEL PEAK  2(1P35.2) WILD-TYPE         0
D27V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  2(1P35.2) MUTATED   15 11 14  4
  DEL PEAK  2(1P35.2) WILD-TYPE 33 17 20  2
D27V4, multiclass
    clus
vv   DEL PEAK  2(1P35.2) MUTATED DEL PEAK  2(1P35.2) WILD-TYPE
  T1                          15                            33
  T2                          11                            17
  T3                          14                            20
  T4                           4                             2
D27V5, binary
                               cls
clus                             0  1
  DEL PEAK  2(1P35.2) MUTATED   23  3
  DEL PEAK  2(1P35.2) WILD-TYPE 51  0
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P35.2) MUTATED     23    3
  DEL PEAK  2(1P35.2) WILD-TYPE   51    0
   clus
vv  DEL PEAK  2(1P35.2) MUTATED DEL PEAK  2(1P35.2) WILD-TYPE
  0                          23                            51
  1                           3                             0
                               vv
clus                            M0 M1 MX
  DEL PEAK  2(1P35.2) MUTATED   31  2 11
  DEL PEAK  2(1P35.2) WILD-TYPE 59  0 14
D27V6, multiclass
    clus
vv   DEL PEAK  2(1P35.2) MUTATED DEL PEAK  2(1P35.2) WILD-TYPE
  M0                          31                            59
  M1                           2                             0
  MX                          11                            14
D27V7, binary
                               cls
clus                             0  1
  DEL PEAK  2(1P35.2) MUTATED   18 26
  DEL PEAK  2(1P35.2) WILD-TYPE 26 47
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P35.2) MUTATED     18   26
  DEL PEAK  2(1P35.2) WILD-TYPE   26   47
        clus
vv       DEL PEAK  2(1P35.2) MUTATED DEL PEAK  2(1P35.2) WILD-TYPE
  FEMALE                          18                            26
  MALE                            26                            47
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK  2(1P35.2) MUTATED   33  5  1  4
  DEL PEAK  2(1P35.2) WILD-TYPE 60  5  0  4
D27V8, multiclass
    clus
vv   DEL PEAK  2(1P35.2) MUTATED DEL PEAK  2(1P35.2) WILD-TYPE
  R0                          33                            60
  R1                           5                             5
  R2                           1                             0
  RX                           4                             4

Clustering(28) Variable = DEL PEAK  3(2Q22.1) MUTATION ANALYSIS
D28V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  3(2Q22.1) MUTATED    4  7
  DEL PEAK  3(2Q22.1) WILD-TYPE 57 46
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           11                           103 
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                            7                            46 
$`DEL PEAK  3(2Q22.1) MUTATED`
TCGA-BC-A10R TCGA-BC-A10Y TCGA-BC-A3KF TCGA-DD-A115 TCGA-DD-A1EL TCGA-DD-A39V 
       10.13        23.34         0.26        83.57        13.64        21.14 
TCGA-DD-A3A1 TCGA-DD-A4NG TCGA-DD-A4NJ TCGA-DD-A4NN TCGA-ED-A459 
        7.66        14.93        15.06        29.56         0.23 

$`DEL PEAK  3(2Q22.1) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U 
       48.99        27.91        37.32        46.78        27.52        27.52 
TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 
        2.99        25.32         1.12        69.57         5.03        44.42 
TCGA-BC-A217 TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5261 
       13.81        16.37         9.50         0.07         2.86         3.02 
TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-CC-A3MB 
        3.39         4.24         3.32         0.10         0.07         0.10 
TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 
        0.13        79.73        37.74        53.29       112.96         7.33 
TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA 
        2.60         0.46        21.76        51.25        90.67        79.36 
TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EH 
       66.31        19.76        75.65         6.67        12.95        49.15 
TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A0 
        6.02        29.16        55.66         5.59        19.73        25.81 
TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 
       70.06        17.59        20.12       102.74       107.11        13.78 
TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4ND TCGA-DD-A4NE TCGA-DD-A4NF 
        0.36        30.58        33.14        73.38        21.67        14.07 
TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NO TCGA-DD-A4NP 
       14.24        10.78        39.75        56.25        61.45        93.67 
TCGA-DD-A4NQ TCGA-ED-A5KG TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB 
       12.26         0.20        10.85         7.76        11.74         1.97 
TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A23B 
        0.62         3.19         0.43        23.01        14.40        32.45 
TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A496 
       19.07         0.20         6.35         0.13         0.03         0.33 
TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V 
       60.36         0.39         1.22        51.02        53.79        28.27 
TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH 
       30.71        58.49        14.86        21.53        22.13        25.64 
TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SK TCGA-G3-A5SL 
        5.88        19.53        19.23        11.97         9.93         7.99 
TCGA-G3-A5SM 
        4.37 

  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                         0.23                          0.03 
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                        83.57                        112.96 
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                        14.93                         17.59 
[1] "0.2 - 83.6 (14.9)"  "0.0 - 113.0 (17.6)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "DEL PEAK  3(2Q22.1) MUTATED"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "DEL PEAK  3(2Q22.1) MUTATED"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "DEL PEAK  3(2Q22.1) MUTATED"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
[1] "hr=" "1.9"
D28V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK  3(2Q22.1) MUTATED         2        5         0          4
  DEL PEAK  3(2Q22.1) WILD-TYPE      43       20         2         21
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK  3(2Q22.1) MUTATED            0          0        0         0
  DEL PEAK  3(2Q22.1) WILD-TYPE          3          4        1         1
                               vv
clus                            STAGE IVB
  DEL PEAK  3(2Q22.1) MUTATED           0
  DEL PEAK  3(2Q22.1) WILD-TYPE         1
D28V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  3(2Q22.1) MUTATED    2  5  5  1
  DEL PEAK  3(2Q22.1) WILD-TYPE 46 23 29  5
D28V4, multiclass
    clus
vv   DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  T1                           2                            46
  T2                           5                            23
  T3                           5                            29
  T4                           1                             5
D28V5, binary
                               cls
clus                             0  1
  DEL PEAK  3(2Q22.1) MUTATED    8  0
  DEL PEAK  3(2Q22.1) WILD-TYPE 66  3
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q22.1) MUTATED      8    0
  DEL PEAK  3(2Q22.1) WILD-TYPE   66    3
   clus
vv  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  0                           8                            66
  1                           0                             3
                               vv
clus                            M0 M1 MX
  DEL PEAK  3(2Q22.1) MUTATED   10  0  3
  DEL PEAK  3(2Q22.1) WILD-TYPE 80  2 22
D28V6, multiclass
    clus
vv   DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  M0                          10                            80
  M1                           0                             2
  MX                           3                            22
D28V7, binary
                               cls
clus                             0  1
  DEL PEAK  3(2Q22.1) MUTATED    5  8
  DEL PEAK  3(2Q22.1) WILD-TYPE 39 65
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q22.1) MUTATED      5    8
  DEL PEAK  3(2Q22.1) WILD-TYPE   39   65
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  FEMALE                           5                            39
  MALE                             8                            65
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK  3(2Q22.1) MUTATED   12  0  0  1
  DEL PEAK  3(2Q22.1) WILD-TYPE 81 10  1  7
D28V8, multiclass
    clus
vv   DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  R0                          12                            81
  R1                           0                            10
  R2                           0                             1
  RX                           1                             7

Clustering(29) Variable = DEL PEAK  4(2Q37.3) MUTATION ANALYSIS
D29V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  4(2Q37.3) MUTATED   14  7
  DEL PEAK  4(2Q37.3) WILD-TYPE 47 46
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           21                            93 
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                            7                            46 
$`DEL PEAK  4(2Q37.3) MUTATED`
TCGA-BC-4073 TCGA-BC-A10Y TCGA-BC-A216 TCGA-BC-A3KF TCGA-BC-A5W4 TCGA-CC-A3M9 
       27.91        23.34        44.42         0.26         9.50         0.10 
TCGA-DD-A113 TCGA-DD-A115 TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1EB TCGA-DD-A1EL 
       79.73        83.57         2.60        21.76        66.31        13.64 
TCGA-DD-A39Z TCGA-DD-A4NA TCGA-DD-A4NE TCGA-DD-A4NJ TCGA-DD-A4NN TCGA-DD-A4NQ 
       19.73        33.14        21.67        15.06        29.56        12.26 
TCGA-ED-A459 TCGA-FV-A3I0 TCGA-FV-A496 
        0.23         0.20         0.33 

$`DEL PEAK  4(2Q37.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U 
       48.99        37.32        10.13        46.78        27.52        27.52 
TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A217 
        2.99        25.32         1.12        69.57         5.03        13.81 
TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 
       16.37         0.07         2.86         3.02         3.39         4.24 
TCGA-CC-A1HT TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A116 
        3.32         0.07         0.10         0.13        37.74        53.29 
TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA 
      112.96         7.33         0.46        51.25        90.67        79.36 
TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EH TCGA-DD-A1EI 
       19.76        75.65         6.67        12.95        49.15         6.02 
TCGA-DD-A1EJ TCGA-DD-A39V TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A3A0 TCGA-DD-A3A1 
       29.16        21.14        55.66         5.59        25.81         7.66 
TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 
       70.06        17.59        20.12       102.74       107.11        13.78 
TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NG TCGA-DD-A4NH 
        0.36        30.58        73.38        14.07        14.93        14.24 
TCGA-DD-A4NI TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NO TCGA-DD-A4NP TCGA-ED-A5KG 
       10.78        39.75        56.25        61.45        93.67         0.20 
TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL 
       10.85         7.76        11.74         1.97         0.62         3.19 
TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3R2 
        0.43        23.01        14.40        32.45        19.07         6.35 
TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25T 
        0.13         0.03        60.36         0.39         1.22        51.02 
TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z 
       53.79        28.27        30.71        58.49        14.86        21.53 
TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SJ 
       22.13        25.64         5.88        19.53        19.23        11.97 
TCGA-G3-A5SK TCGA-G3-A5SL TCGA-G3-A5SM 
        9.93         7.99         4.37 

  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                         0.10                          0.03 
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                        83.57                        112.96 
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                        19.73                         14.93 
[1] "0.1 - 83.6 (19.7)"  "0.0 - 113.0 (14.9)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
  "DEL PEAK  4(2Q37.3) MUTATED"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
  "DEL PEAK  4(2Q37.3) MUTATED"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
  "DEL PEAK  4(2Q37.3) MUTATED"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
[1] "hr=" "1.3"
D29V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK  4(2Q37.3) MUTATED         6        8         0          7
  DEL PEAK  4(2Q37.3) WILD-TYPE      39       17         2         18
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK  4(2Q37.3) MUTATED            0          1        0         0
  DEL PEAK  4(2Q37.3) WILD-TYPE          3          3        1         1
                               vv
clus                            STAGE IVB
  DEL PEAK  4(2Q37.3) MUTATED           0
  DEL PEAK  4(2Q37.3) WILD-TYPE         1
D29V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  4(2Q37.3) MUTATED    6  9  7  1
  DEL PEAK  4(2Q37.3) WILD-TYPE 42 19 27  5
D29V4, multiclass
    clus
vv   DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  T1                           6                            42
  T2                           9                            19
  T3                           7                            27
  T4                           1                             5
D29V5, binary
                               cls
clus                             0  1
  DEL PEAK  4(2Q37.3) MUTATED   15  1
  DEL PEAK  4(2Q37.3) WILD-TYPE 59  2
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2Q37.3) MUTATED     15    1
  DEL PEAK  4(2Q37.3) WILD-TYPE   59    2
   clus
vv  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  0                          15                            59
  1                           1                             2
                               vv
clus                            M0 M1 MX
  DEL PEAK  4(2Q37.3) MUTATED   20  0  3
  DEL PEAK  4(2Q37.3) WILD-TYPE 70  2 22
D29V6, multiclass
    clus
vv   DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  M0                          20                            70
  M1                           0                             2
  MX                           3                            22
D29V7, binary
                               cls
clus                             0  1
  DEL PEAK  4(2Q37.3) MUTATED   12 11
  DEL PEAK  4(2Q37.3) WILD-TYPE 32 62
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2Q37.3) MUTATED     12   11
  DEL PEAK  4(2Q37.3) WILD-TYPE   32   62
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  FEMALE                          12                            32
  MALE                            11                            62
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK  4(2Q37.3) MUTATED   19  2  0  2
  DEL PEAK  4(2Q37.3) WILD-TYPE 74  8  1  6
D29V8, multiclass
    clus
vv   DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  R0                          19                            74
  R1                           2                             8
  R2                           0                             1
  RX                           2                             6

Clustering(30) Variable = DEL PEAK  5(3P13) MUTATION ANALYSIS
D30V1, survival
                             sevent
clus2                          0  1
  DEL PEAK  5(3P13) MUTATED   13  7
  DEL PEAK  5(3P13) WILD-TYPE 48 46
  DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE 
                         20                          94 
  DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE 
                          7                          46 
$`DEL PEAK  5(3P13) MUTATED`
TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A112 TCGA-BC-A217 TCGA-CC-5260 
       27.91        37.32        10.13         5.03        13.81         2.86 
TCGA-CC-5263 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-DD-A113 TCGA-DD-A11A TCGA-DD-A1E9 
        4.24         0.07         0.10        79.73         2.60        90.67 
TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4NG TCGA-DD-A4NO TCGA-FV-A3I0 TCGA-FV-A3R3 
       30.58        33.14        14.93        61.45         0.20         0.13 
TCGA-G3-A25T TCGA-G3-A25X 
       51.02        58.49 

$`DEL PEAK  5(3P13) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X 
       48.99        46.78        27.52        27.52         2.99        25.32 
TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A216 TCGA-BC-A3KF TCGA-BC-A3KG 
       23.34         1.12        69.57        44.42         0.26        16.37 
TCGA-BC-A5W4 TCGA-CC-5258 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-A1HT TCGA-CC-A3M9 
        9.50         0.07         3.02         3.39         3.32         0.10 
TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 
        0.13        37.74        83.57        53.29       112.96         7.33 
TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC 
        0.46        21.76        51.25        79.36        66.31        19.76 
TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ 
       75.65         6.67        12.95        49.15         6.02        29.16 
TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A0 
       13.64        21.14        55.66         5.59        19.73        25.81 
TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 
        7.66        70.06        17.59        20.12       102.74       107.11 
TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A4ND TCGA-DD-A4NE TCGA-DD-A4NF TCGA-DD-A4NH 
       13.78         0.36        73.38        21.67        14.07        14.24 
TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NP 
       10.78        15.06        39.75        56.25        29.56        93.67 
TCGA-DD-A4NQ TCGA-ED-A459 TCGA-ED-A5KG TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA 
       12.26         0.23         0.20        10.85         7.76        11.74 
TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT 
        1.97         0.62         3.19         0.43        23.01        14.40 
TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3R2 TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZP 
       32.45        19.07         6.35         0.03         0.33        60.36 
TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Y 
        0.39         1.22        53.79        28.27        30.71        14.86 
TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
       21.53        22.13        25.64         5.88        19.53        19.23 
TCGA-G3-A5SJ TCGA-G3-A5SK TCGA-G3-A5SL TCGA-G3-A5SM 
       11.97         9.93         7.99         4.37 

  DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE 
                       0.07                        0.03 
  DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE 
                      90.67                      112.96 
  DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE 
                      14.37                       16.98 
[1] "0.1 - 90.7 (14.4)"  "0.0 - 113.0 (17.0)"
                 TCGA-BC-4072                  TCGA-BC-4073 
"DEL PEAK  5(3P13) WILD-TYPE"   "DEL PEAK  5(3P13) MUTATED" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "DEL PEAK  5(3P13) MUTATED"   "DEL PEAK  5(3P13) MUTATED" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-CC-5258                  TCGA-CC-5260 
"DEL PEAK  5(3P13) WILD-TYPE"   "DEL PEAK  5(3P13) MUTATED" 
                 TCGA-CC-5261                  TCGA-CC-5262 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
"DEL PEAK  5(3P13) WILD-TYPE"   "DEL PEAK  5(3P13) MUTATED" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A113                  TCGA-DD-A114 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A115                  TCGA-DD-A116 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EH 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A1EI                  TCGA-DD-A1EJ 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
  "DEL PEAK  5(3P13) MUTATED"   "DEL PEAK  5(3P13) MUTATED" 
                 TCGA-DD-A4ND                  TCGA-DD-A4NE 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NG 
"DEL PEAK  5(3P13) WILD-TYPE"   "DEL PEAK  5(3P13) MUTATED" 
                 TCGA-DD-A4NH                  TCGA-DD-A4NI 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A4NJ                  TCGA-DD-A4NK 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A4NL                  TCGA-DD-A4NN 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A4NO                  TCGA-DD-A4NP 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A4NQ                  TCGA-ED-A459 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-ED-A5KG                  TCGA-EP-A12J 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-FV-A3I0                  TCGA-FV-A3R2 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-FV-A3R3                  TCGA-FV-A495 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-FV-A496                  TCGA-FV-A4ZP 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-FV-A4ZQ                  TCGA-G3-A25S 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-G3-A25T                  TCGA-G3-A25U 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-G3-A25V                  TCGA-G3-A25W 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-G3-A25X                  TCGA-G3-A25Y 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-G3-A25Z                  TCGA-G3-A3CG 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-G3-A3CH                  TCGA-G3-A3CI 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-G3-A3CJ                  TCGA-G3-A3CK 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SK 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-G3-A5SL                  TCGA-G3-A5SM 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"DEL PEAK  5(3P13) WILD-TYPE"   "DEL PEAK  5(3P13) MUTATED" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "DEL PEAK  5(3P13) MUTATED"   "DEL PEAK  5(3P13) MUTATED" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-CC-5258                  TCGA-CC-5260 
"DEL PEAK  5(3P13) WILD-TYPE"   "DEL PEAK  5(3P13) MUTATED" 
                 TCGA-CC-5261                  TCGA-CC-5262 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
"DEL PEAK  5(3P13) WILD-TYPE"   "DEL PEAK  5(3P13) MUTATED" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A113                  TCGA-DD-A114 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A115                  TCGA-DD-A116 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EH 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A1EI                  TCGA-DD-A1EJ 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
  "DEL PEAK  5(3P13) MUTATED"   "DEL PEAK  5(3P13) MUTATED" 
                 TCGA-DD-A4ND                  TCGA-DD-A4NE 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NG 
"DEL PEAK  5(3P13) WILD-TYPE"   "DEL PEAK  5(3P13) MUTATED" 
                 TCGA-DD-A4NH                  TCGA-DD-A4NI 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A4NJ                  TCGA-DD-A4NK 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A4NL                  TCGA-DD-A4NN 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A4NO                  TCGA-DD-A4NP 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A4NQ                  TCGA-ED-A459 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-ED-A5KG                  TCGA-EP-A12J 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-FV-A3I0                  TCGA-FV-A3R2 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-FV-A3R3                  TCGA-FV-A495 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-FV-A496                  TCGA-FV-A4ZP 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-FV-A4ZQ                  TCGA-G3-A25S 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-G3-A25T                  TCGA-G3-A25U 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-G3-A25V                  TCGA-G3-A25W 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-G3-A25X                  TCGA-G3-A25Y 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-G3-A25Z                  TCGA-G3-A3CG 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-G3-A3CH                  TCGA-G3-A3CI 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-G3-A3CJ                  TCGA-G3-A3CK 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SK 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-G3-A5SL                  TCGA-G3-A5SM 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"DEL PEAK  5(3P13) WILD-TYPE"   "DEL PEAK  5(3P13) MUTATED" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "DEL PEAK  5(3P13) MUTATED"   "DEL PEAK  5(3P13) MUTATED" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-CC-5258                  TCGA-CC-5260 
"DEL PEAK  5(3P13) WILD-TYPE"   "DEL PEAK  5(3P13) MUTATED" 
                 TCGA-CC-5261                  TCGA-CC-5262 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
"DEL PEAK  5(3P13) WILD-TYPE"   "DEL PEAK  5(3P13) MUTATED" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A113                  TCGA-DD-A114 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A115                  TCGA-DD-A116 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EH 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A1EI                  TCGA-DD-A1EJ 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
  "DEL PEAK  5(3P13) MUTATED"   "DEL PEAK  5(3P13) MUTATED" 
                 TCGA-DD-A4ND                  TCGA-DD-A4NE 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NG 
"DEL PEAK  5(3P13) WILD-TYPE"   "DEL PEAK  5(3P13) MUTATED" 
                 TCGA-DD-A4NH                  TCGA-DD-A4NI 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A4NJ                  TCGA-DD-A4NK 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A4NL                  TCGA-DD-A4NN 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A4NO                  TCGA-DD-A4NP 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-DD-A4NQ                  TCGA-ED-A459 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-ED-A5KG                  TCGA-EP-A12J 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-FV-A3I0                  TCGA-FV-A3R2 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-FV-A3R3                  TCGA-FV-A495 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-FV-A496                  TCGA-FV-A4ZP 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-FV-A4ZQ                  TCGA-G3-A25S 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-G3-A25T                  TCGA-G3-A25U 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-G3-A25V                  TCGA-G3-A25W 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-G3-A25X                  TCGA-G3-A25Y 
  "DEL PEAK  5(3P13) MUTATED" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-G3-A25Z                  TCGA-G3-A3CG 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-G3-A3CH                  TCGA-G3-A3CI 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-G3-A3CJ                  TCGA-G3-A3CK 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SK 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
                 TCGA-G3-A5SL                  TCGA-G3-A5SM 
"DEL PEAK  5(3P13) WILD-TYPE" "DEL PEAK  5(3P13) WILD-TYPE" 
[1] "hr=" "1.4"
D30V2, continuous
                             vv
clus                          STAGE I STAGE II STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK  5(3P13) MUTATED         4        4         0          5          0
  DEL PEAK  5(3P13) WILD-TYPE      41       21         2         20          3
                             vv
clus                          STAGE IIIC STAGE IV STAGE IVA STAGE IVB
  DEL PEAK  5(3P13) MUTATED            2        0         0         1
  DEL PEAK  5(3P13) WILD-TYPE          2        1         1         0
D30V3, multiclass
                             vv
clus                          T1 T2 T3 T4
  DEL PEAK  5(3P13) MUTATED    4  6  7  2
  DEL PEAK  5(3P13) WILD-TYPE 44 22 27  4
D30V4, multiclass
    clus
vv   DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE
  T1                         4                          44
  T2                         6                          22
  T3                         7                          27
  T4                         2                           4
D30V5, binary
                             cls
clus                           0  1
  DEL PEAK  5(3P13) MUTATED   12  1
  DEL PEAK  5(3P13) WILD-TYPE 62  2
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  5(3P13) MUTATED     12    1
  DEL PEAK  5(3P13) WILD-TYPE   62    2
   clus
vv  DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE
  0                        12                          62
  1                         1                           2
                             vv
clus                          M0 M1 MX
  DEL PEAK  5(3P13) MUTATED   14  1  5
  DEL PEAK  5(3P13) WILD-TYPE 76  1 20
D30V6, multiclass
    clus
vv   DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE
  M0                        14                          76
  M1                         1                           1
  MX                         5                          20
D30V7, binary
                             cls
clus                           0  1
  DEL PEAK  5(3P13) MUTATED   10 10
  DEL PEAK  5(3P13) WILD-TYPE 34 63
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  5(3P13) MUTATED     10   10
  DEL PEAK  5(3P13) WILD-TYPE   34   63
        clus
vv       DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE
  FEMALE                        10                          34
  MALE                          10                          63
                             vv
clus                          R0 R1 R2 RX
  DEL PEAK  5(3P13) MUTATED   16  2  0  2
  DEL PEAK  5(3P13) WILD-TYPE 77  8  1  6
D30V8, multiclass
    clus
vv   DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE
  R0                        16                          77
  R1                         2                           8
  R2                         0                           1
  RX                         2                           6

Clustering(31) Variable = DEL PEAK  6(4P16.1) MUTATION ANALYSIS
D31V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  6(4P16.1) MUTATED   10 10
  DEL PEAK  6(4P16.1) WILD-TYPE 51 43
  DEL PEAK  6(4P16.1) MUTATED DEL PEAK  6(4P16.1) WILD-TYPE 
                           20                            94 
  DEL PEAK  6(4P16.1) MUTATED DEL PEAK  6(4P16.1) WILD-TYPE 
                           10                            43 
$`DEL PEAK  6(4P16.1) MUTATED`
TCGA-BC-A10Y TCGA-BC-A112 TCGA-BC-A5W4 TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A119 
       23.34         5.03         9.50         0.13        37.74         7.33 
TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A4NJ TCGA-DD-A4NN 
        6.02        29.16        55.66         5.59        15.06        29.56 
TCGA-ED-A459 TCGA-EP-A2KB TCGA-EP-A2KC TCGA-FV-A4ZP TCGA-G3-A25S TCGA-G3-A25U 
        0.23         1.97         0.62        60.36         1.22        53.79 
TCGA-G3-A25X TCGA-G3-A3CH 
       58.49        25.64 

$`DEL PEAK  6(4P16.1) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T 
       48.99        27.91        37.32        10.13        46.78        27.52 
TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A216 
       27.52         2.99        25.32         1.12        69.57        44.42 
TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5261 
       13.81         0.26        16.37         0.07         2.86         3.02 
TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-CC-A3MB 
        3.39         4.24         3.32         0.10         0.07         0.10 
TCGA-DD-A113 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A11A TCGA-DD-A11B 
       79.73        83.57        53.29       112.96         2.60         0.46 
TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC 
       21.76        51.25        90.67        79.36        66.31        19.76 
TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EH TCGA-DD-A1EL TCGA-DD-A39V 
       75.65         6.67        12.95        49.15        13.64        21.14 
TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 
       19.73        25.81         7.66        70.06        17.59        20.12 
TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NA 
      102.74       107.11        13.78         0.36        30.58        33.14 
TCGA-DD-A4ND TCGA-DD-A4NE TCGA-DD-A4NF TCGA-DD-A4NG TCGA-DD-A4NH TCGA-DD-A4NI 
       73.38        21.67        14.07        14.93        14.24        10.78 
TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-ED-A5KG 
       39.75        56.25        61.45        93.67        12.26         0.20 
TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS 
       10.85         7.76        11.74         3.19         0.43        23.01 
TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A3R3 
       14.40        32.45        19.07         0.20         6.35         0.13 
TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25V TCGA-G3-A25W 
        0.03         0.33         0.39        51.02        28.27        30.71 
TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
       14.86        21.53        22.13         5.88        19.53        19.23 
TCGA-G3-A5SJ TCGA-G3-A5SK TCGA-G3-A5SL TCGA-G3-A5SM 
       11.97         9.93         7.99         4.37 

  DEL PEAK  6(4P16.1) MUTATED DEL PEAK  6(4P16.1) WILD-TYPE 
                         0.13                          0.03 
  DEL PEAK  6(4P16.1) MUTATED DEL PEAK  6(4P16.1) WILD-TYPE 
                        60.36                        112.96 
  DEL PEAK  6(4P16.1) MUTATED DEL PEAK  6(4P16.1) WILD-TYPE 
                        12.28                         16.98 
[1] "0.1 - 60.4 (12.3)"  "0.0 - 113.0 (17.0)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK  6(4P16.1) MUTATED" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
  "DEL PEAK  6(4P16.1) MUTATED"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK  6(4P16.1) MUTATED"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "DEL PEAK  6(4P16.1) MUTATED" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "DEL PEAK  6(4P16.1) MUTATED"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
  "DEL PEAK  6(4P16.1) MUTATED" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
  "DEL PEAK  6(4P16.1) MUTATED" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK  6(4P16.1) MUTATED" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
  "DEL PEAK  6(4P16.1) MUTATED"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK  6(4P16.1) MUTATED"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "DEL PEAK  6(4P16.1) MUTATED" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "DEL PEAK  6(4P16.1) MUTATED"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
  "DEL PEAK  6(4P16.1) MUTATED" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
  "DEL PEAK  6(4P16.1) MUTATED" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK  6(4P16.1) MUTATED" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
  "DEL PEAK  6(4P16.1) MUTATED"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK  6(4P16.1) MUTATED"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "DEL PEAK  6(4P16.1) MUTATED" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "DEL PEAK  6(4P16.1) MUTATED"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
  "DEL PEAK  6(4P16.1) MUTATED" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
  "DEL PEAK  6(4P16.1) MUTATED" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
[1] "hr=" "1.3"
D31V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK  6(4P16.1) MUTATED         8        4         0          5
  DEL PEAK  6(4P16.1) WILD-TYPE      37       21         2         20
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK  6(4P16.1) MUTATED            0          1        1         1
  DEL PEAK  6(4P16.1) WILD-TYPE          3          3        0         0
                               vv
clus                            STAGE IVB
  DEL PEAK  6(4P16.1) MUTATED           0
  DEL PEAK  6(4P16.1) WILD-TYPE         1
D31V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  6(4P16.1) MUTATED   10  4  7  1
  DEL PEAK  6(4P16.1) WILD-TYPE 38 24 27  5
D31V4, multiclass
    clus
vv   DEL PEAK  6(4P16.1) MUTATED DEL PEAK  6(4P16.1) WILD-TYPE
  T1                          10                            38
  T2                           4                            24
  T3                           7                            27
  T4                           1                             5
D31V5, binary
                               cls
clus                             0  1
  DEL PEAK  6(4P16.1) MUTATED   11  2
  DEL PEAK  6(4P16.1) WILD-TYPE 63  1
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4P16.1) MUTATED     11    2
  DEL PEAK  6(4P16.1) WILD-TYPE   63    1
   clus
vv  DEL PEAK  6(4P16.1) MUTATED DEL PEAK  6(4P16.1) WILD-TYPE
  0                          11                            63
  1                           2                             1
                               vv
clus                            M0 M1 MX
  DEL PEAK  6(4P16.1) MUTATED   16  1  5
  DEL PEAK  6(4P16.1) WILD-TYPE 74  1 20
D31V6, multiclass
    clus
vv   DEL PEAK  6(4P16.1) MUTATED DEL PEAK  6(4P16.1) WILD-TYPE
  M0                          16                            74
  M1                           1                             1
  MX                           5                            20
D31V7, binary
                               cls
clus                             0  1
  DEL PEAK  6(4P16.1) MUTATED    6 16
  DEL PEAK  6(4P16.1) WILD-TYPE 38 57
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4P16.1) MUTATED      6   16
  DEL PEAK  6(4P16.1) WILD-TYPE   38   57
        clus
vv       DEL PEAK  6(4P16.1) MUTATED DEL PEAK  6(4P16.1) WILD-TYPE
  FEMALE                           6                            38
  MALE                            16                            57
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK  6(4P16.1) MUTATED   17  3  1  1
  DEL PEAK  6(4P16.1) WILD-TYPE 76  7  0  7
D31V8, multiclass
    clus
vv   DEL PEAK  6(4P16.1) MUTATED DEL PEAK  6(4P16.1) WILD-TYPE
  R0                          17                            76
  R1                           3                             7
  R2                           1                             0
  RX                           1                             7

Clustering(32) Variable = DEL PEAK  7(4Q25) MUTATION ANALYSIS
D32V1, survival
                             sevent
clus2                          0  1
  DEL PEAK  7(4Q25) MUTATED   26 25
  DEL PEAK  7(4Q25) WILD-TYPE 35 28
  DEL PEAK  7(4Q25) MUTATED DEL PEAK  7(4Q25) WILD-TYPE 
                         51                          63 
  DEL PEAK  7(4Q25) MUTATED DEL PEAK  7(4Q25) WILD-TYPE 
                         25                          28 
$`DEL PEAK  7(4Q25) MUTATED`
TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A112 
       10.13        27.52        27.52        23.34         1.12         5.03 
TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A5W4 TCGA-CC-5258 TCGA-CC-5261 TCGA-CC-5263 
       13.81         0.26         9.50         0.07         3.02         4.24 
TCGA-CC-A3M9 TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A116 
        0.10         0.10         0.13        79.73        37.74        53.29 
TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A1EB TCGA-DD-A1EH 
        7.33         2.60         0.46        21.76        66.31        49.15 
TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A3A0 
        6.02        29.16        13.64        55.66         5.59        25.81 
TCGA-DD-A3A5 TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4ND TCGA-DD-A4NE TCGA-DD-A4NH 
      102.74        30.58        33.14        73.38        21.67        14.24 
TCGA-DD-A4NJ TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NQ TCGA-ED-A459 TCGA-EP-A2KB 
       15.06        29.56        61.45        12.26         0.23         1.97 
TCGA-EP-A2KC TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZP TCGA-G3-A25S TCGA-G3-A25X 
        0.62         0.03         0.33        60.36         1.22        58.49 
TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A5SM 
       14.86        21.53         4.37 

$`DEL PEAK  7(4Q25) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A10W TCGA-BC-A10X 
       48.99        27.91        37.32        46.78         2.99        25.32 
TCGA-BC-A110 TCGA-BC-A216 TCGA-BC-A3KG TCGA-CC-5260 TCGA-CC-5262 TCGA-CC-A1HT 
       69.57        44.42        16.37         2.86         3.39         3.32 
TCGA-CC-A3MA TCGA-DD-A115 TCGA-DD-A118 TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA 
        0.07        83.57       112.96        51.25        90.67        79.36 
TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A39V TCGA-DD-A39Z 
       19.76        75.65         6.67        12.95        21.14        19.73 
TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A6 TCGA-DD-A3A7 
        7.66        70.06        17.59        20.12       107.11        13.78 
TCGA-DD-A3A8 TCGA-DD-A4NF TCGA-DD-A4NG TCGA-DD-A4NI TCGA-DD-A4NK TCGA-DD-A4NL 
        0.36        14.07        14.93        10.78        39.75        56.25 
TCGA-DD-A4NP TCGA-ED-A5KG TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A3JL 
       93.67         0.20        10.85         7.76        11.74         3.19 
TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 
        0.43        23.01        14.40        32.45        19.07         0.20 
TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V 
        6.35         0.13         0.39        51.02        53.79        28.27 
TCGA-G3-A25W TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
       30.71        22.13        25.64         5.88        19.53        19.23 
TCGA-G3-A5SJ TCGA-G3-A5SK TCGA-G3-A5SL 
       11.97         9.93         7.99 

  DEL PEAK  7(4Q25) MUTATED DEL PEAK  7(4Q25) WILD-TYPE 
                       0.03                        0.07 
  DEL PEAK  7(4Q25) MUTATED DEL PEAK  7(4Q25) WILD-TYPE 
                     102.74                      112.96 
  DEL PEAK  7(4Q25) MUTATED DEL PEAK  7(4Q25) WILD-TYPE 
                      13.81                       19.23 
[1] "0.0 - 102.7 (13.8)" "0.1 - 113.0 (19.2)"
                 TCGA-BC-4072                  TCGA-BC-4073 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-CC-5258                  TCGA-CC-5260 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-CC-5261                  TCGA-CC-5262 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A113                  TCGA-DD-A114 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A115                  TCGA-DD-A116 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A118                  TCGA-DD-A119 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EH 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A1EI                  TCGA-DD-A1EJ 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A4ND                  TCGA-DD-A4NE 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NG 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A4NH                  TCGA-DD-A4NI 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A4NJ                  TCGA-DD-A4NK 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A4NL                  TCGA-DD-A4NN 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A4NO                  TCGA-DD-A4NP 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A4NQ                  TCGA-ED-A459 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-ED-A5KG                  TCGA-EP-A12J 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-FV-A3I0                  TCGA-FV-A3R2 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-FV-A3R3                  TCGA-FV-A495 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-FV-A496                  TCGA-FV-A4ZP 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-FV-A4ZQ                  TCGA-G3-A25S 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-G3-A25T                  TCGA-G3-A25U 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-G3-A25V                  TCGA-G3-A25W 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-G3-A25X                  TCGA-G3-A25Y 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-G3-A25Z                  TCGA-G3-A3CG 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-G3-A3CH                  TCGA-G3-A3CI 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-G3-A3CJ                  TCGA-G3-A3CK 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SK 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-G3-A5SL                  TCGA-G3-A5SM 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-CC-5258                  TCGA-CC-5260 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-CC-5261                  TCGA-CC-5262 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A113                  TCGA-DD-A114 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A115                  TCGA-DD-A116 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A118                  TCGA-DD-A119 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EH 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A1EI                  TCGA-DD-A1EJ 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A4ND                  TCGA-DD-A4NE 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NG 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A4NH                  TCGA-DD-A4NI 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A4NJ                  TCGA-DD-A4NK 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A4NL                  TCGA-DD-A4NN 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A4NO                  TCGA-DD-A4NP 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A4NQ                  TCGA-ED-A459 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-ED-A5KG                  TCGA-EP-A12J 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-FV-A3I0                  TCGA-FV-A3R2 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-FV-A3R3                  TCGA-FV-A495 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-FV-A496                  TCGA-FV-A4ZP 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-FV-A4ZQ                  TCGA-G3-A25S 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-G3-A25T                  TCGA-G3-A25U 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-G3-A25V                  TCGA-G3-A25W 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-G3-A25X                  TCGA-G3-A25Y 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-G3-A25Z                  TCGA-G3-A3CG 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-G3-A3CH                  TCGA-G3-A3CI 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-G3-A3CJ                  TCGA-G3-A3CK 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SK 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-G3-A5SL                  TCGA-G3-A5SM 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-CC-5258                  TCGA-CC-5260 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-CC-5261                  TCGA-CC-5262 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A113                  TCGA-DD-A114 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A115                  TCGA-DD-A116 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A118                  TCGA-DD-A119 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EH 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A1EI                  TCGA-DD-A1EJ 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A4ND                  TCGA-DD-A4NE 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NG 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A4NH                  TCGA-DD-A4NI 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A4NJ                  TCGA-DD-A4NK 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A4NL                  TCGA-DD-A4NN 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-DD-A4NO                  TCGA-DD-A4NP 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-DD-A4NQ                  TCGA-ED-A459 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-ED-A5KG                  TCGA-EP-A12J 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-FV-A3I0                  TCGA-FV-A3R2 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-FV-A3R3                  TCGA-FV-A495 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-FV-A496                  TCGA-FV-A4ZP 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-FV-A4ZQ                  TCGA-G3-A25S 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-G3-A25T                  TCGA-G3-A25U 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-G3-A25V                  TCGA-G3-A25W 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-G3-A25X                  TCGA-G3-A25Y 
  "DEL PEAK  7(4Q25) MUTATED"   "DEL PEAK  7(4Q25) MUTATED" 
                 TCGA-G3-A25Z                  TCGA-G3-A3CG 
  "DEL PEAK  7(4Q25) MUTATED" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-G3-A3CH                  TCGA-G3-A3CI 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-G3-A3CJ                  TCGA-G3-A3CK 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SK 
"DEL PEAK  7(4Q25) WILD-TYPE" "DEL PEAK  7(4Q25) WILD-TYPE" 
                 TCGA-G3-A5SL                  TCGA-G3-A5SM 
"DEL PEAK  7(4Q25) WILD-TYPE"   "DEL PEAK  7(4Q25) MUTATED" 
[1] "hr=" "1.4"
D32V2, continuous
                             vv
clus                          STAGE I STAGE II STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK  7(4Q25) MUTATED        19       13         2          9          1
  DEL PEAK  7(4Q25) WILD-TYPE      26       12         0         16          2
                             vv
clus                          STAGE IIIC STAGE IV STAGE IVA STAGE IVB
  DEL PEAK  7(4Q25) MUTATED            2        1         1         1
  DEL PEAK  7(4Q25) WILD-TYPE          2        0         0         0
D32V3, multiclass
                             vv
clus                          T1 T2 T3 T4
  DEL PEAK  7(4Q25) MUTATED   21 15 15  3
  DEL PEAK  7(4Q25) WILD-TYPE 27 13 19  3
D32V4, multiclass
    clus
vv   DEL PEAK  7(4Q25) MUTATED DEL PEAK  7(4Q25) WILD-TYPE
  T1                        21                          27
  T2                        15                          13
  T3                        15                          19
  T4                         3                           3
D32V5, binary
                             cls
clus                           0  1
  DEL PEAK  7(4Q25) MUTATED   33  3
  DEL PEAK  7(4Q25) WILD-TYPE 41  0
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  7(4Q25) MUTATED     33    3
  DEL PEAK  7(4Q25) WILD-TYPE   41    0
   clus
vv  DEL PEAK  7(4Q25) MUTATED DEL PEAK  7(4Q25) WILD-TYPE
  0                        33                          41
  1                         3                           0
                             vv
clus                          M0 M1 MX
  DEL PEAK  7(4Q25) MUTATED   42  2 10
  DEL PEAK  7(4Q25) WILD-TYPE 48  0 15
D32V6, multiclass
    clus
vv   DEL PEAK  7(4Q25) MUTATED DEL PEAK  7(4Q25) WILD-TYPE
  M0                        42                          48
  M1                         2                           0
  MX                        10                          15
D32V7, binary
                             cls
clus                           0  1
  DEL PEAK  7(4Q25) MUTATED   21 33
  DEL PEAK  7(4Q25) WILD-TYPE 23 40
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  7(4Q25) MUTATED     21   33
  DEL PEAK  7(4Q25) WILD-TYPE   23   40
        clus
vv       DEL PEAK  7(4Q25) MUTATED DEL PEAK  7(4Q25) WILD-TYPE
  FEMALE                        21                          23
  MALE                          33                          40
                             vv
clus                          R0 R1 R2 RX
  DEL PEAK  7(4Q25) MUTATED   42  5  1  6
  DEL PEAK  7(4Q25) WILD-TYPE 51  5  0  2
D32V8, multiclass
    clus
vv   DEL PEAK  7(4Q25) MUTATED DEL PEAK  7(4Q25) WILD-TYPE
  R0                        42                          51
  R1                         5                           5
  R2                         1                           0
  RX                         6                           2

Clustering(33) Variable = DEL PEAK  8(4Q35.1) MUTATION ANALYSIS
D33V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  8(4Q35.1) MUTATED   23 23
  DEL PEAK  8(4Q35.1) WILD-TYPE 38 30
  DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE 
                           46                            68 
  DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE 
                           23                            30 
$`DEL PEAK  8(4Q35.1) MUTATED`
TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10W TCGA-BC-A10Z TCGA-BC-A112 TCGA-BC-A217 
       10.13        27.52         2.99         1.12         5.03        13.81 
TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-CC-5258 TCGA-CC-5261 TCGA-CC-A1HT 
        0.26        16.37         9.50         0.07         3.02         3.32 
TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 
        0.10         0.07         0.10         0.13        79.73        37.74 
TCGA-DD-A116 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A1EH TCGA-DD-A1EI 
       53.29         7.33         2.60         0.46        49.15         6.02 
TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A3A0 TCGA-DD-A3A2 
       29.16        13.64        55.66         5.59        25.81        70.06 
TCGA-DD-A3A9 TCGA-DD-A4NH TCGA-DD-A4NJ TCGA-DD-A4NN TCGA-DD-A4NO TCGA-ED-A459 
       30.58        14.24        15.06        29.56        61.45         0.23 
TCGA-EP-A2KB TCGA-EP-A2KC TCGA-FV-A2QR TCGA-FV-A496 TCGA-FV-A4ZP TCGA-G3-A25S 
        1.97         0.62        19.07         0.33        60.36         1.22 
TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A5SM 
       58.49        14.86        21.53         4.37 

$`DEL PEAK  8(4Q35.1) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10X 
       48.99        27.91        37.32        46.78        27.52        25.32 
TCGA-BC-A10Y TCGA-BC-A110 TCGA-BC-A216 TCGA-CC-5260 TCGA-CC-5262 TCGA-CC-5263 
       23.34        69.57        44.42         2.86         3.39         4.24 
TCGA-DD-A115 TCGA-DD-A118 TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA 
       83.57       112.96        21.76        51.25        90.67        79.36 
TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A39V 
       66.31        19.76        75.65         6.67        12.95        21.14 
TCGA-DD-A39Z TCGA-DD-A3A1 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 
       19.73         7.66        17.59        20.12       102.74       107.11 
TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A4NA TCGA-DD-A4ND TCGA-DD-A4NE TCGA-DD-A4NF 
       13.78         0.36        33.14        73.38        21.67        14.07 
TCGA-DD-A4NG TCGA-DD-A4NI TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NP TCGA-DD-A4NQ 
       14.93        10.78        39.75        56.25        93.67        12.26 
TCGA-ED-A5KG TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A3JL TCGA-EP-A3RK 
        0.20        10.85         7.76        11.74         3.19         0.43 
TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A3R3 
       23.01        14.40        32.45         0.20         6.35         0.13 
TCGA-FV-A495 TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W 
        0.03         0.39        51.02        53.79        28.27        30.71 
TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SJ 
       22.13        25.64         5.88        19.53        19.23        11.97 
TCGA-G3-A5SK TCGA-G3-A5SL 
        9.93         7.99 

  DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE 
                         0.07                          0.03 
  DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE 
                        79.73                        112.96 
  DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE 
                        9.815                        20.630 
[1] "0.1 - 79.7 (9.8)"   "0.0 - 113.0 (20.6)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
[1] "hr=" "1.9"
D33V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK  8(4Q35.1) MUTATED        18       12         1          9
  DEL PEAK  8(4Q35.1) WILD-TYPE      27       13         1         16
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK  8(4Q35.1) MUTATED            1          1        1         1
  DEL PEAK  8(4Q35.1) WILD-TYPE          2          3        0         0
                               vv
clus                            STAGE IVB
  DEL PEAK  8(4Q35.1) MUTATED           1
  DEL PEAK  8(4Q35.1) WILD-TYPE         0
D33V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  8(4Q35.1) MUTATED   20 12 14  3
  DEL PEAK  8(4Q35.1) WILD-TYPE 28 16 20  3
D33V4, multiclass
    clus
vv   DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE
  T1                          20                            28
  T2                          12                            16
  T3                          14                            20
  T4                           3                             3
D33V5, binary
                               cls
clus                             0  1
  DEL PEAK  8(4Q35.1) MUTATED   31  2
  DEL PEAK  8(4Q35.1) WILD-TYPE 43  1
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(4Q35.1) MUTATED     31    2
  DEL PEAK  8(4Q35.1) WILD-TYPE   43    1
   clus
vv  DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE
  0                          31                            43
  1                           2                             1
                               vv
clus                            M0 M1 MX
  DEL PEAK  8(4Q35.1) MUTATED   38  2  9
  DEL PEAK  8(4Q35.1) WILD-TYPE 52  0 16
D33V6, multiclass
    clus
vv   DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE
  M0                          38                            52
  M1                           2                             0
  MX                           9                            16
D33V7, binary
                               cls
clus                             0  1
  DEL PEAK  8(4Q35.1) MUTATED   17 32
  DEL PEAK  8(4Q35.1) WILD-TYPE 27 41
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(4Q35.1) MUTATED     17   32
  DEL PEAK  8(4Q35.1) WILD-TYPE   27   41
        clus
vv       DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE
  FEMALE                          17                            27
  MALE                            32                            41
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK  8(4Q35.1) MUTATED   37  5  1  5
  DEL PEAK  8(4Q35.1) WILD-TYPE 56  5  0  3
D33V8, multiclass
    clus
vv   DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE
  R0                          37                            56
  R1                           5                             5
  R2                           1                             0
  RX                           5                             3

Clustering(34) Variable = DEL PEAK  9(5Q23.1) MUTATION ANALYSIS
D34V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  9(5Q23.1) MUTATED    6  9
  DEL PEAK  9(5Q23.1) WILD-TYPE 55 44
  DEL PEAK  9(5Q23.1) MUTATED DEL PEAK  9(5Q23.1) WILD-TYPE 
                           15                            99 
  DEL PEAK  9(5Q23.1) MUTATED DEL PEAK  9(5Q23.1) WILD-TYPE 
                            9                            44 
$`DEL PEAK  9(5Q23.1) MUTATED`
TCGA-BC-A10R TCGA-BC-A10S TCGA-CC-5263 TCGA-CC-A3M9 TCGA-DD-A116 TCGA-DD-A11A 
       10.13        46.78         4.24         0.10        53.29         2.60 
TCGA-DD-A1EF TCGA-DD-A1EH TCGA-DD-A1EJ TCGA-DD-A3A4 TCGA-DD-A3A8 TCGA-ES-A2HS 
       12.95        49.15        29.16        20.12         0.36        23.01 
TCGA-FV-A3I0 TCGA-FV-A496 TCGA-FV-A4ZP 
        0.20         0.33        60.36 

$`DEL PEAK  9(5Q23.1) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W 
       48.99        27.91        37.32        27.52        27.52         2.99 
TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 
       25.32        23.34         1.12        69.57         5.03        44.42 
TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-CC-5258 TCGA-CC-5260 
       13.81         0.26        16.37         9.50         0.07         2.86 
TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-A1HT TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC 
        3.02         3.39         3.32         0.07         0.10         0.13 
TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11B 
       79.73        37.74        83.57       112.96         7.33         0.46 
TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC 
       21.76        51.25        90.67        79.36        66.31        19.76 
TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EI TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39X 
       75.65         6.67         6.02        13.64        21.14        55.66 
TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 
        5.59        19.73        25.81         7.66        70.06        17.59 
TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4ND 
      102.74       107.11        13.78        30.58        33.14        73.38 
TCGA-DD-A4NE TCGA-DD-A4NF TCGA-DD-A4NG TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ 
       21.67        14.07        14.93        14.24        10.78        15.06 
TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A4NQ 
       39.75        56.25        29.56        61.45        93.67        12.26 
TCGA-ED-A459 TCGA-ED-A5KG TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB 
        0.23         0.20        10.85         7.76        11.74         1.97 
TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR 
        0.62         3.19         0.43        14.40        32.45        19.07 
TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25T 
        6.35         0.13         0.03         0.39         1.22        51.02 
TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z 
       53.79        28.27        30.71        58.49        14.86        21.53 
TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SJ 
       22.13        25.64         5.88        19.53        19.23        11.97 
TCGA-G3-A5SK TCGA-G3-A5SL TCGA-G3-A5SM 
        9.93         7.99         4.37 

  DEL PEAK  9(5Q23.1) MUTATED DEL PEAK  9(5Q23.1) WILD-TYPE 
                         0.10                          0.03 
  DEL PEAK  9(5Q23.1) MUTATED DEL PEAK  9(5Q23.1) WILD-TYPE 
                        60.36                        112.96 
  DEL PEAK  9(5Q23.1) MUTATED DEL PEAK  9(5Q23.1) WILD-TYPE 
                        12.95                         16.37 
[1] "0.1 - 60.4 (12.9)"  "0.0 - 113.0 (16.4)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  9(5Q23.1) WILD-TYPE"   "DEL PEAK  9(5Q23.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK  9(5Q23.1) MUTATED" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "DEL PEAK  9(5Q23.1) MUTATED" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK  9(5Q23.1) MUTATED" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"DEL PEAK  9(5Q23.1) WILD-TYPE"   "DEL PEAK  9(5Q23.1) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK  9(5Q23.1) MUTATED" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
  "DEL PEAK  9(5Q23.1) MUTATED"   "DEL PEAK  9(5Q23.1) MUTATED" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"DEL PEAK  9(5Q23.1) WILD-TYPE"   "DEL PEAK  9(5Q23.1) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  9(5Q23.1) WILD-TYPE"   "DEL PEAK  9(5Q23.1) MUTATED" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  9(5Q23.1) WILD-TYPE"   "DEL PEAK  9(5Q23.1) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "DEL PEAK  9(5Q23.1) MUTATED" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
  "DEL PEAK  9(5Q23.1) MUTATED" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
  "DEL PEAK  9(5Q23.1) MUTATED"   "DEL PEAK  9(5Q23.1) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  9(5Q23.1) WILD-TYPE"   "DEL PEAK  9(5Q23.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK  9(5Q23.1) MUTATED" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "DEL PEAK  9(5Q23.1) MUTATED" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK  9(5Q23.1) MUTATED" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"DEL PEAK  9(5Q23.1) WILD-TYPE"   "DEL PEAK  9(5Q23.1) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK  9(5Q23.1) MUTATED" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
  "DEL PEAK  9(5Q23.1) MUTATED"   "DEL PEAK  9(5Q23.1) MUTATED" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"DEL PEAK  9(5Q23.1) WILD-TYPE"   "DEL PEAK  9(5Q23.1) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  9(5Q23.1) WILD-TYPE"   "DEL PEAK  9(5Q23.1) MUTATED" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  9(5Q23.1) WILD-TYPE"   "DEL PEAK  9(5Q23.1) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "DEL PEAK  9(5Q23.1) MUTATED" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
  "DEL PEAK  9(5Q23.1) MUTATED" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
  "DEL PEAK  9(5Q23.1) MUTATED"   "DEL PEAK  9(5Q23.1) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  9(5Q23.1) WILD-TYPE"   "DEL PEAK  9(5Q23.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK  9(5Q23.1) MUTATED" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "DEL PEAK  9(5Q23.1) MUTATED" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK  9(5Q23.1) MUTATED" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
"DEL PEAK  9(5Q23.1) WILD-TYPE"   "DEL PEAK  9(5Q23.1) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK  9(5Q23.1) MUTATED" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
  "DEL PEAK  9(5Q23.1) MUTATED"   "DEL PEAK  9(5Q23.1) MUTATED" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
"DEL PEAK  9(5Q23.1) WILD-TYPE"   "DEL PEAK  9(5Q23.1) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK  9(5Q23.1) WILD-TYPE"   "DEL PEAK  9(5Q23.1) MUTATED" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK  9(5Q23.1) WILD-TYPE"   "DEL PEAK  9(5Q23.1) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "DEL PEAK  9(5Q23.1) MUTATED" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
  "DEL PEAK  9(5Q23.1) MUTATED" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
  "DEL PEAK  9(5Q23.1) MUTATED"   "DEL PEAK  9(5Q23.1) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"DEL PEAK  9(5Q23.1) WILD-TYPE" "DEL PEAK  9(5Q23.1) WILD-TYPE" 
[1] "hr=" "1.8"
D34V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK  9(5Q23.1) MUTATED         4        2         1          6
  DEL PEAK  9(5Q23.1) WILD-TYPE      41       23         1         19
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK  9(5Q23.1) MUTATED            0          1        0         0
  DEL PEAK  9(5Q23.1) WILD-TYPE          3          3        1         1
                               vv
clus                            STAGE IVB
  DEL PEAK  9(5Q23.1) MUTATED           0
  DEL PEAK  9(5Q23.1) WILD-TYPE         1
D34V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  9(5Q23.1) MUTATED    5  2  9  0
  DEL PEAK  9(5Q23.1) WILD-TYPE 43 26 25  6
D34V4, multiclass
    clus
vv   DEL PEAK  9(5Q23.1) MUTATED DEL PEAK  9(5Q23.1) WILD-TYPE
  T1                           5                            43
  T2                           2                            26
  T3                           9                            25
  T4                           0                             6
D34V5, binary
                               cls
clus                             0  1
  DEL PEAK  9(5Q23.1) MUTATED    9  1
  DEL PEAK  9(5Q23.1) WILD-TYPE 65  2
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(5Q23.1) MUTATED      9    1
  DEL PEAK  9(5Q23.1) WILD-TYPE   65    2
   clus
vv  DEL PEAK  9(5Q23.1) MUTATED DEL PEAK  9(5Q23.1) WILD-TYPE
  0                           9                            65
  1                           1                             2
                               vv
clus                            M0 M1 MX
  DEL PEAK  9(5Q23.1) MUTATED   13  0  3
  DEL PEAK  9(5Q23.1) WILD-TYPE 77  2 22
D34V6, multiclass
    clus
vv   DEL PEAK  9(5Q23.1) MUTATED DEL PEAK  9(5Q23.1) WILD-TYPE
  M0                          13                            77
  M1                           0                             2
  MX                           3                            22
D34V7, binary
                               cls
clus                             0  1
  DEL PEAK  9(5Q23.1) MUTATED    5 11
  DEL PEAK  9(5Q23.1) WILD-TYPE 39 62
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(5Q23.1) MUTATED      5   11
  DEL PEAK  9(5Q23.1) WILD-TYPE   39   62
        clus
vv       DEL PEAK  9(5Q23.1) MUTATED DEL PEAK  9(5Q23.1) WILD-TYPE
  FEMALE                           5                            39
  MALE                            11                            62
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK  9(5Q23.1) MUTATED   13  1  0  2
  DEL PEAK  9(5Q23.1) WILD-TYPE 80  9  1  6
D34V8, multiclass
    clus
vv   DEL PEAK  9(5Q23.1) MUTATED DEL PEAK  9(5Q23.1) WILD-TYPE
  R0                          13                            80
  R1                           1                             9
  R2                           0                             1
  RX                           2                             6

Clustering(35) Variable = DEL PEAK 10(6Q16.3) MUTATION ANALYSIS
D35V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 10(6Q16.3) MUTATED   23 19
  DEL PEAK 10(6Q16.3) WILD-TYPE 38 34
  DEL PEAK 10(6Q16.3) MUTATED DEL PEAK 10(6Q16.3) WILD-TYPE 
                           42                            72 
  DEL PEAK 10(6Q16.3) MUTATED DEL PEAK 10(6Q16.3) WILD-TYPE 
                           19                            34 
$`DEL PEAK 10(6Q16.3) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A3KF TCGA-BC-A5W4 TCGA-CC-5260 TCGA-CC-A3M9 
       37.32        10.13         0.26         9.50         2.86         0.10 
TCGA-CC-A3MA TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A118 TCGA-DD-A119 
        0.07        79.73        37.74        83.57       112.96         7.33 
TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1E9 TCGA-DD-A1EC TCGA-DD-A1EE TCGA-DD-A1EF 
        2.60        21.76        90.67        19.76         6.67        12.95 
TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A39X TCGA-DD-A39Z TCGA-DD-A3A1 
       49.15         6.02        29.16        55.66        19.73         7.66 
TCGA-DD-A3A8 TCGA-DD-A4NA TCGA-DD-A4NG TCGA-DD-A4NH TCGA-DD-A4NJ TCGA-DD-A4NK 
        0.36        33.14        14.93        14.24        15.06        39.75 
TCGA-EP-A12J TCGA-EP-A3RK TCGA-ES-A2HS TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 
       10.85         0.43        23.01        32.45        19.07         0.20 
TCGA-FV-A3R2 TCGA-FV-A4ZP TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25X TCGA-G3-A5SL 
        6.35        60.36         1.22        51.02        58.49         7.99 

$`DEL PEAK 10(6Q16.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W 
       48.99        27.91        46.78        27.52        27.52         2.99 
TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 
       25.32        23.34         1.12        69.57         5.03        44.42 
TCGA-BC-A217 TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 
       13.81        16.37         0.07         3.02         3.39         4.24 
TCGA-CC-A1HT TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A116 TCGA-DD-A11B TCGA-DD-A11D 
        3.32         0.10         0.13        53.29         0.46        51.25 
TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1ED TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39Y 
       79.36        66.31        75.65        13.64        21.14         5.59 
TCGA-DD-A3A0 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 
       25.81        70.06        17.59        20.12       102.74       107.11 
TCGA-DD-A3A7 TCGA-DD-A3A9 TCGA-DD-A4ND TCGA-DD-A4NE TCGA-DD-A4NF TCGA-DD-A4NI 
       13.78        30.58        73.38        21.67        14.07        10.78 
TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-ED-A459 
       56.25        29.56        61.45        93.67        12.26         0.23 
TCGA-ED-A5KG TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL 
        0.20         7.76        11.74         1.97         0.62         3.19 
TCGA-ES-A2HT TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZQ TCGA-G3-A25U 
       14.40         0.13         0.03         0.33         0.39        53.79 
TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH 
       28.27        30.71        14.86        21.53        22.13        25.64 
TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SK TCGA-G3-A5SM 
        5.88        19.53        19.23        11.97         9.93         4.37 

  DEL PEAK 10(6Q16.3) MUTATED DEL PEAK 10(6Q16.3) WILD-TYPE 
                         0.07                          0.03 
  DEL PEAK 10(6Q16.3) MUTATED DEL PEAK 10(6Q16.3) WILD-TYPE 
                       112.96                        107.11 
  DEL PEAK 10(6Q16.3) MUTATED DEL PEAK 10(6Q16.3) WILD-TYPE 
                       14.995                        16.980 
[1] "0.1 - 113.0 (15.0)" "0.0 - 107.1 (17.0)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
  "DEL PEAK 10(6Q16.3) MUTATED"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"DEL PEAK 10(6Q16.3) WILD-TYPE"   "DEL PEAK 10(6Q16.3) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"DEL PEAK 10(6Q16.3) WILD-TYPE" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
  "DEL PEAK 10(6Q16.3) MUTATED" "DEL PEAK 10(6Q16.3) WILD-TYPE" 
[1] "hr=" "1.1"
D35V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 10(6Q16.3) MUTATED        13        9         1         11
  DEL PEAK 10(6Q16.3) WILD-TYPE      32       16         1         14
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 10(6Q16.3) MUTATED            1          3        1         0
  DEL PEAK 10(6Q16.3) WILD-TYPE          2          1        0         1
                               vv
clus                            STAGE IVB
  DEL PEAK 10(6Q16.3) MUTATED           0
  DEL PEAK 10(6Q16.3) WILD-TYPE         1
D35V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 10(6Q16.3) MUTATED   14 11 15  1
  DEL PEAK 10(6Q16.3) WILD-TYPE 34 17 19  5
D35V4, multiclass
    clus
vv   DEL PEAK 10(6Q16.3) MUTATED DEL PEAK 10(6Q16.3) WILD-TYPE
  T1                          14                            34
  T2                          11                            17
  T3                          15                            19
  T4                           1                             5
D35V5, binary
                               cls
clus                             0  1
  DEL PEAK 10(6Q16.3) MUTATED   25  2
  DEL PEAK 10(6Q16.3) WILD-TYPE 49  1
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(6Q16.3) MUTATED     25    2
  DEL PEAK 10(6Q16.3) WILD-TYPE   49    1
   clus
vv  DEL PEAK 10(6Q16.3) MUTATED DEL PEAK 10(6Q16.3) WILD-TYPE
  0                          25                            49
  1                           2                             1
                               vv
clus                            M0 M1 MX
  DEL PEAK 10(6Q16.3) MUTATED   35  1  6
  DEL PEAK 10(6Q16.3) WILD-TYPE 55  1 19
D35V6, multiclass
    clus
vv   DEL PEAK 10(6Q16.3) MUTATED DEL PEAK 10(6Q16.3) WILD-TYPE
  M0                          35                            55
  M1                           1                             1
  MX                           6                            19
D35V7, binary
                               cls
clus                             0  1
  DEL PEAK 10(6Q16.3) MUTATED   18 24
  DEL PEAK 10(6Q16.3) WILD-TYPE 26 49
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(6Q16.3) MUTATED     18   24
  DEL PEAK 10(6Q16.3) WILD-TYPE   26   49
        clus
vv       DEL PEAK 10(6Q16.3) MUTATED DEL PEAK 10(6Q16.3) WILD-TYPE
  FEMALE                          18                            26
  MALE                            24                            49
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK 10(6Q16.3) MUTATED   33  4  1  3
  DEL PEAK 10(6Q16.3) WILD-TYPE 60  6  0  5
D35V8, multiclass
    clus
vv   DEL PEAK 10(6Q16.3) MUTATED DEL PEAK 10(6Q16.3) WILD-TYPE
  R0                          33                            60
  R1                           4                             6
  R2                           1                             0
  RX                           3                             5

Clustering(36) Variable = DEL PEAK 11(6Q26) MUTATION ANALYSIS
D36V1, survival
                             sevent
clus2                          0  1
  DEL PEAK 11(6Q26) MUTATED   25 22
  DEL PEAK 11(6Q26) WILD-TYPE 36 31
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                         47                          67 
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                         22                          31 
$`DEL PEAK 11(6Q26) MUTATED`
TCGA-BC-A10Q TCGA-BC-A3KF TCGA-BC-A5W4 TCGA-CC-5260 TCGA-CC-5263 TCGA-CC-A1HT 
       37.32         0.26         9.50         2.86         4.24         3.32 
TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A115 
        0.10         0.07         0.13        79.73        37.74        83.57 
TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1E9 TCGA-DD-A1EE 
      112.96         7.33         2.60        21.76        90.67         6.67 
TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A39X TCGA-DD-A39Z TCGA-DD-A3A0 
       49.15         6.02        29.16        55.66        19.73        25.81 
TCGA-DD-A3A1 TCGA-DD-A3A8 TCGA-DD-A4NA TCGA-DD-A4NG TCGA-DD-A4NH TCGA-DD-A4NJ 
        7.66         0.36        33.14        14.93        14.24        15.06 
TCGA-DD-A4NK TCGA-DD-A4NN TCGA-ED-A459 TCGA-EP-A12J TCGA-EP-A3RK TCGA-ES-A2HS 
       39.75        29.56         0.23        10.85         0.43        23.01 
TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A496 TCGA-FV-A4ZP 
       32.45        19.07         0.20         6.35         0.33        60.36 
TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A5SL 
        1.22        51.02        58.49        14.86         7.99 

$`DEL PEAK 11(6Q26) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U 
       48.99        27.91        10.13        46.78        27.52        27.52 
TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 
        2.99        25.32        23.34         1.12        69.57         5.03 
TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5261 TCGA-CC-5262 
       44.42        13.81        16.37         0.07         3.02         3.39 
TCGA-CC-A3MB TCGA-DD-A116 TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1EA TCGA-DD-A1EB 
        0.10        53.29         0.46        51.25        79.36        66.31 
TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EF TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39Y 
       19.76        75.65        12.95        13.64        21.14         5.59 
TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 
       70.06        17.59        20.12       102.74       107.11        13.78 
TCGA-DD-A3A9 TCGA-DD-A4ND TCGA-DD-A4NE TCGA-DD-A4NF TCGA-DD-A4NI TCGA-DD-A4NL 
       30.58        73.38        21.67        14.07        10.78        56.25 
TCGA-DD-A4NO TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-ED-A5KG TCGA-EP-A26S TCGA-EP-A2KA 
       61.45        93.67        12.26         0.20         7.76        11.74 
TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL TCGA-ES-A2HT TCGA-FV-A3R3 TCGA-FV-A495 
        1.97         0.62         3.19        14.40         0.13         0.03 
TCGA-FV-A4ZQ TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Z TCGA-G3-A3CG 
        0.39        53.79        28.27        30.71        21.53        22.13 
TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SK 
       25.64         5.88        19.53        19.23        11.97         9.93 
TCGA-G3-A5SM 
        4.37 

  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                       0.07                        0.03 
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                     112.96                      107.11 
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                      14.86                       19.23 
[1] "0.1 - 113.0 (14.9)" "0.0 - 107.1 (19.2)"
                 TCGA-BC-4072                  TCGA-BC-4073 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-CC-5258                  TCGA-CC-5260 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-CC-5261                  TCGA-CC-5262 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A113                  TCGA-DD-A114 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A115                  TCGA-DD-A116 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EH 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A1EI                  TCGA-DD-A1EJ 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A4ND                  TCGA-DD-A4NE 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NG 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A4NH                  TCGA-DD-A4NI 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A4NJ                  TCGA-DD-A4NK 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A4NL                  TCGA-DD-A4NN 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A4NO                  TCGA-DD-A4NP 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A4NQ                  TCGA-ED-A459 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-ED-A5KG                  TCGA-EP-A12J 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-FV-A3I0                  TCGA-FV-A3R2 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-FV-A3R3                  TCGA-FV-A495 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FV-A496                  TCGA-FV-A4ZP 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-FV-A4ZQ                  TCGA-G3-A25S 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-G3-A25T                  TCGA-G3-A25U 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-G3-A25V                  TCGA-G3-A25W 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-G3-A25X                  TCGA-G3-A25Y 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-G3-A25Z                  TCGA-G3-A3CG 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-G3-A3CH                  TCGA-G3-A3CI 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-G3-A3CJ                  TCGA-G3-A3CK 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SK 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-G3-A5SL                  TCGA-G3-A5SM 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-CC-5258                  TCGA-CC-5260 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-CC-5261                  TCGA-CC-5262 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A113                  TCGA-DD-A114 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A115                  TCGA-DD-A116 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EH 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A1EI                  TCGA-DD-A1EJ 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A4ND                  TCGA-DD-A4NE 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NG 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A4NH                  TCGA-DD-A4NI 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A4NJ                  TCGA-DD-A4NK 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A4NL                  TCGA-DD-A4NN 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A4NO                  TCGA-DD-A4NP 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A4NQ                  TCGA-ED-A459 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-ED-A5KG                  TCGA-EP-A12J 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-FV-A3I0                  TCGA-FV-A3R2 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-FV-A3R3                  TCGA-FV-A495 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FV-A496                  TCGA-FV-A4ZP 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-FV-A4ZQ                  TCGA-G3-A25S 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-G3-A25T                  TCGA-G3-A25U 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-G3-A25V                  TCGA-G3-A25W 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-G3-A25X                  TCGA-G3-A25Y 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-G3-A25Z                  TCGA-G3-A3CG 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-G3-A3CH                  TCGA-G3-A3CI 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-G3-A3CJ                  TCGA-G3-A3CK 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SK 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-G3-A5SL                  TCGA-G3-A5SM 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-BC-A3KG                  TCGA-BC-A5W4 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-CC-5258                  TCGA-CC-5260 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-CC-5261                  TCGA-CC-5262 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-CC-A1HT 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-CC-A3M9                  TCGA-CC-A3MA 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-CC-A3MB                  TCGA-CC-A3MC 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A113                  TCGA-DD-A114 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A115                  TCGA-DD-A116 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A118                  TCGA-DD-A119 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A11A                  TCGA-DD-A11B 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A11C                  TCGA-DD-A11D 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A1E9                  TCGA-DD-A1EA 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A1EB                  TCGA-DD-A1EC 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A1ED                  TCGA-DD-A1EE 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A1EF                  TCGA-DD-A1EH 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A1EI                  TCGA-DD-A1EJ 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A1EL                  TCGA-DD-A39V 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A39X                  TCGA-DD-A39Y 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A39Z                  TCGA-DD-A3A0 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A3A1                  TCGA-DD-A3A2 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A3A3                  TCGA-DD-A3A4 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A3A5                  TCGA-DD-A3A6 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A3A7                  TCGA-DD-A3A8 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A3A9                  TCGA-DD-A4NA 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A4ND                  TCGA-DD-A4NE 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A4NF                  TCGA-DD-A4NG 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A4NH                  TCGA-DD-A4NI 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A4NJ                  TCGA-DD-A4NK 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A4NL                  TCGA-DD-A4NN 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-DD-A4NO                  TCGA-DD-A4NP 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DD-A4NQ                  TCGA-ED-A459 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-ED-A5KG                  TCGA-EP-A12J 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EP-A26S                  TCGA-EP-A2KA 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EP-A2KB                  TCGA-EP-A2KC 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EP-A3JL                  TCGA-EP-A3RK 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-ES-A2HS                  TCGA-ES-A2HT 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FV-A23B                  TCGA-FV-A2QR 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-FV-A3I0                  TCGA-FV-A3R2 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-FV-A3R3                  TCGA-FV-A495 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FV-A496                  TCGA-FV-A4ZP 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-FV-A4ZQ                  TCGA-G3-A25S 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-G3-A25T                  TCGA-G3-A25U 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-G3-A25V                  TCGA-G3-A25W 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-G3-A25X                  TCGA-G3-A25Y 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-G3-A25Z                  TCGA-G3-A3CG 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-G3-A3CH                  TCGA-G3-A3CI 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-G3-A3CJ                  TCGA-G3-A3CK 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-G3-A5SJ                  TCGA-G3-A5SK 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-G3-A5SL                  TCGA-G3-A5SM 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
[1] "hr=" "1.1"
D36V2, continuous
                             vv
clus                          STAGE I STAGE II STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 11(6Q26) MUTATED        15       10         1         14          1
  DEL PEAK 11(6Q26) WILD-TYPE      30       15         1         11          2
                             vv
clus                          STAGE IIIC STAGE IV STAGE IVA STAGE IVB
  DEL PEAK 11(6Q26) MUTATED            3        1         0         0
  DEL PEAK 11(6Q26) WILD-TYPE          1        0         1         1
D36V3, multiclass
                             vv
clus                          T1 T2 T3 T4
  DEL PEAK 11(6Q26) MUTATED   16 12 17  1
  DEL PEAK 11(6Q26) WILD-TYPE 32 16 17  5
D36V4, multiclass
    clus
vv   DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  T1                        16                          32
  T2                        12                          16
  T3                        17                          17
  T4                         1                           5
D36V5, binary
                             cls
clus                           0  1
  DEL PEAK 11(6Q26) MUTATED   29  2
  DEL PEAK 11(6Q26) WILD-TYPE 45  1
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(6Q26) MUTATED     29    2
  DEL PEAK 11(6Q26) WILD-TYPE   45    1
   clus
vv  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  0                        29                          45
  1                         2                           1
                             vv
clus                          M0 M1 MX
  DEL PEAK 11(6Q26) MUTATED   41  1  5
  DEL PEAK 11(6Q26) WILD-TYPE 49  1 20
D36V6, multiclass
    clus
vv   DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  M0                        41                          49
  M1                         1                           1
  MX                         5                          20
D36V7, binary
                             cls
clus                           0  1
  DEL PEAK 11(6Q26) MUTATED   18 29
  DEL PEAK 11(6Q26) WILD-TYPE 26 44
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(6Q26) MUTATED     18   29
  DEL PEAK 11(6Q26) WILD-TYPE   26   44
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  FEMALE                        18                          26
  MALE                          29                          44
                             vv
clus                          R0 R1 R2 RX
  DEL PEAK 11(6Q26) MUTATED   36  4  1  4
  DEL PEAK 11(6Q26) WILD-TYPE 57  6  0  4
D36V8, multiclass
    clus
vv   DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  R0                        36                          57
  R1                         4                           6
  R2                         1                           0
  RX                         4                           4

Clustering(37) Variable = DEL PEAK 12(8P23.2) MUTATION ANALYSIS
D37V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 12(8P23.2) MUTATED   36 37
  DEL PEAK 12(8P23.2) WILD-TYPE 25 16
  DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE 
                           73                            41 
  DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE 
                           37                            16 
$`DEL PEAK 12(8P23.2) MUTATED`
TCGA-BC-4072 TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A112 
       48.99        10.13        46.78        27.52        27.52         5.03 
TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5261 
       44.42        13.81         0.26        16.37         0.07         3.02 
TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MC TCGA-DD-A113 
        3.39         4.24         3.32         0.10         0.13        79.73 
TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11C TCGA-DD-A1E9 
       83.57        53.29       112.96         7.33        21.76        90.67 
TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39V 
        6.67        12.95         6.02        29.16        13.64        21.14 
TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A3 TCGA-DD-A3A7 
       55.66         5.59        19.73        25.81        17.59        13.78 
TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4ND TCGA-DD-A4NE TCGA-DD-A4NF 
        0.36        30.58        33.14        73.38        21.67        14.07 
TCGA-DD-A4NG TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NN 
       14.93        14.24        10.78        15.06        39.75        29.56 
TCGA-DD-A4NO TCGA-ED-A459 TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KC 
       61.45         0.23        10.85         7.76        11.74         0.62 
TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3I0 
        3.19         0.43        23.01        14.40        19.07         0.20 
TCGA-FV-A3R2 TCGA-FV-A495 TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25V 
        6.35         0.03        60.36         0.39         1.22        28.27 
TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A3CG TCGA-G3-A3CJ TCGA-G3-A5SJ 
       30.71        58.49        14.86        22.13        19.53        11.97 
TCGA-G3-A5SL 
        7.99 

$`DEL PEAK 12(8P23.2) WILD-TYPE`
TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z 
       27.91        37.32         2.99        25.32        23.34         1.12 
TCGA-BC-A110 TCGA-BC-A5W4 TCGA-CC-5260 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-DD-A114 
       69.57         9.50         2.86         0.07         0.10        37.74 
TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC 
        2.60         0.46        51.25        79.36        66.31        19.76 
TCGA-DD-A1ED TCGA-DD-A1EH TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A4 TCGA-DD-A3A5 
       75.65        49.15         7.66        70.06        20.12       102.74 
TCGA-DD-A3A6 TCGA-DD-A4NL TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-ED-A5KG TCGA-EP-A2KB 
      107.11        56.25        93.67        12.26         0.20         1.97 
TCGA-FV-A23B TCGA-FV-A3R3 TCGA-FV-A496 TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25Z 
       32.45         0.13         0.33        51.02        53.79        21.53 
TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CK TCGA-G3-A5SK TCGA-G3-A5SM 
       25.64         5.88        19.23         9.93         4.37 

  DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE 
                         0.03                          0.07 
  DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE 
                       112.96                        107.11 
  DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE 
                        14.40                         21.53 
[1] "0.0 - 113.0 (14.4)" "0.1 - 107.1 (21.5)"
                   TCGA-BC-4072                    TCGA-BC-4073 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 12(8P23.2) WILD-TYPE" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 12(8P23.2) WILD-TYPE" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"DEL PEAK 12(8P23.2) WILD-TYPE" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK 12(8P23.2) WILD-TYPE" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK 12(8P23.2) WILD-TYPE" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK 12(8P23.2) WILD-TYPE" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK 12(8P23.2) WILD-TYPE" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK 12(8P23.2) WILD-TYPE" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 12(8P23.2) WILD-TYPE" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 12(8P23.2) WILD-TYPE" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"DEL PEAK 12(8P23.2) WILD-TYPE" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK 12(8P23.2) WILD-TYPE" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK 12(8P23.2) WILD-TYPE" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK 12(8P23.2) WILD-TYPE" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK 12(8P23.2) WILD-TYPE" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK 12(8P23.2) WILD-TYPE" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 12(8P23.2) WILD-TYPE" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 12(8P23.2) WILD-TYPE" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
"DEL PEAK 12(8P23.2) WILD-TYPE" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK 12(8P23.2) WILD-TYPE" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK 12(8P23.2) WILD-TYPE" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK 12(8P23.2) WILD-TYPE" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
"DEL PEAK 12(8P23.2) WILD-TYPE" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK 12(8P23.2) WILD-TYPE" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
[1] "hr=" "1.8"
D37V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 12(8P23.2) MUTATED        27       18         0         16
  DEL PEAK 12(8P23.2) WILD-TYPE      18        7         2          9
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 12(8P23.2) MUTATED            3          3        1         1
  DEL PEAK 12(8P23.2) WILD-TYPE          0          1        0         0
                               vv
clus                            STAGE IVB
  DEL PEAK 12(8P23.2) MUTATED           1
  DEL PEAK 12(8P23.2) WILD-TYPE         0
D37V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 12(8P23.2) MUTATED   29 20 23  3
  DEL PEAK 12(8P23.2) WILD-TYPE 19  8 11  3
D37V4, multiclass
    clus
vv   DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  T1                          29                            19
  T2                          20                             8
  T3                          23                            11
  T4                           3                             3
D37V5, binary
                               cls
clus                             0  1
  DEL PEAK 12(8P23.2) MUTATED   43  3
  DEL PEAK 12(8P23.2) WILD-TYPE 31  0
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(8P23.2) MUTATED     43    3
  DEL PEAK 12(8P23.2) WILD-TYPE   31    0
   clus
vv  DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  0                          43                            31
  1                           3                             0
                               vv
clus                            M0 M1 MX
  DEL PEAK 12(8P23.2) MUTATED   57  2 16
  DEL PEAK 12(8P23.2) WILD-TYPE 33  0  9
D37V6, multiclass
    clus
vv   DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  M0                          57                            33
  M1                           2                             0
  MX                          16                             9
D37V7, binary
                               cls
clus                             0  1
  DEL PEAK 12(8P23.2) MUTATED   26 49
  DEL PEAK 12(8P23.2) WILD-TYPE 18 24
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(8P23.2) MUTATED     26   49
  DEL PEAK 12(8P23.2) WILD-TYPE   18   24
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  FEMALE                          26                            18
  MALE                            49                            24
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK 12(8P23.2) MUTATED   58  6  1  5
  DEL PEAK 12(8P23.2) WILD-TYPE 35  4  0  3
D37V8, multiclass
    clus
vv   DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  R0                          58                            35
  R1                           6                             4
  R2                           1                             0
  RX                           5                             3

Clustering(38) Variable = DEL PEAK 13(8P11.22) MUTATION ANALYSIS
D38V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 13(8P11.22) MUTATED   26 32
  DEL PEAK 13(8P11.22) WILD-TYPE 35 21
  DEL PEAK 13(8P11.22) MUTATED DEL PEAK 13(8P11.22) WILD-TYPE 
                            58                             56 
  DEL PEAK 13(8P11.22) MUTATED DEL PEAK 13(8P11.22) WILD-TYPE 
                            32                             21 
$`DEL PEAK 13(8P11.22) MUTATED`
TCGA-BC-4072 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A112 
       48.99        37.32        10.13        46.78        27.52         5.03 
TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5261 
       44.42        13.81         0.26        16.37         0.07         3.02 
TCGA-CC-5262 TCGA-CC-A1HT TCGA-CC-A3MA TCGA-DD-A113 TCGA-DD-A115 TCGA-DD-A116 
        3.39         3.32         0.07        79.73        83.57        53.29 
TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11C TCGA-DD-A1E9 TCGA-DD-A1EE TCGA-DD-A1EF 
      112.96         7.33        21.76        90.67         6.67        12.95 
TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39Y TCGA-DD-A39Z 
        6.02        29.16        13.64        21.14         5.59        19.73 
TCGA-DD-A3A3 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4NG 
       17.59        13.78         0.36        30.58        33.14        14.93 
TCGA-DD-A4NK TCGA-DD-A4NN TCGA-DD-A4NO TCGA-ED-A459 TCGA-EP-A12J TCGA-EP-A26S 
       39.75        29.56        61.45         0.23        10.85         7.76 
TCGA-EP-A2KA TCGA-EP-A2KC TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A2QR 
       11.74         0.62         0.43        23.01        14.40        19.07 
TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A495 TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25S 
        0.20         6.35         0.03        60.36         0.39         1.22 
TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A5SL 
       28.27        30.71        58.49         7.99 

$`DEL PEAK 13(8P11.22) WILD-TYPE`
TCGA-BC-4073 TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z 
       27.91        27.52         2.99        25.32        23.34         1.12 
TCGA-BC-A110 TCGA-BC-A5W4 TCGA-CC-5260 TCGA-CC-5263 TCGA-CC-A3M9 TCGA-CC-A3MB 
       69.57         9.50         2.86         4.24         0.10         0.10 
TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11D TCGA-DD-A1EA 
        0.13        37.74         2.60         0.46        51.25        79.36 
TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EH TCGA-DD-A39X TCGA-DD-A3A0 
       66.31        19.76        75.65        49.15        55.66        25.81 
TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A4ND 
        7.66        70.06        20.12       102.74       107.11        73.38 
TCGA-DD-A4NE TCGA-DD-A4NF TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NL 
       21.67        14.07        14.24        10.78        15.06        56.25 
TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-ED-A5KG TCGA-EP-A2KB TCGA-EP-A3JL TCGA-FV-A23B 
       93.67        12.26         0.20         1.97         3.19        32.45 
TCGA-FV-A3R3 TCGA-FV-A496 TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25Y TCGA-G3-A25Z 
        0.13         0.33        51.02        53.79        14.86        21.53 
TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SJ 
       22.13        25.64         5.88        19.53        19.23        11.97 
TCGA-G3-A5SK TCGA-G3-A5SM 
        9.93         4.37 

  DEL PEAK 13(8P11.22) MUTATED DEL PEAK 13(8P11.22) WILD-TYPE 
                          0.03                           0.10 
  DEL PEAK 13(8P11.22) MUTATED DEL PEAK 13(8P11.22) WILD-TYPE 
                        112.96                         107.11 
  DEL PEAK 13(8P11.22) MUTATED DEL PEAK 13(8P11.22) WILD-TYPE 
                        14.105                         19.645 
[1] "0.0 - 113.0 (14.1)" "0.1 - 107.1 (19.6)"
                    TCGA-BC-4072                     TCGA-BC-4073 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"DEL PEAK 13(8P11.22) WILD-TYPE"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
  "DEL PEAK 13(8P11.22) MUTATED"   "DEL PEAK 13(8P11.22) MUTATED" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"DEL PEAK 13(8P11.22) WILD-TYPE" "DEL PEAK 13(8P11.22) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
  "DEL PEAK 13(8P11.22) MUTATED" "DEL PEAK 13(8P11.22) WILD-TYPE" 
[1] "hr=" "1.7"
D38V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 13(8P11.22) MUTATED        19       15         0         13
  DEL PEAK 13(8P11.22) WILD-TYPE      26       10         2         12
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 13(8P11.22) MUTATED            2          3        1         1
  DEL PEAK 13(8P11.22) WILD-TYPE          1          1        0         0
                                vv
clus                             STAGE IVB
  DEL PEAK 13(8P11.22) MUTATED           1
  DEL PEAK 13(8P11.22) WILD-TYPE         0
D38V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 13(8P11.22) MUTATED   21 17 19  3
  DEL PEAK 13(8P11.22) WILD-TYPE 27 11 15  3
D38V4, multiclass
    clus
vv   DEL PEAK 13(8P11.22) MUTATED DEL PEAK 13(8P11.22) WILD-TYPE
  T1                           21                             27
  T2                           17                             11
  T3                           19                             15
  T4                            3                              3
D38V5, binary
                                cls
clus                              0  1
  DEL PEAK 13(8P11.22) MUTATED   33  3
  DEL PEAK 13(8P11.22) WILD-TYPE 41  0
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(8P11.22) MUTATED     33    3
  DEL PEAK 13(8P11.22) WILD-TYPE   41    0
   clus
vv  DEL PEAK 13(8P11.22) MUTATED DEL PEAK 13(8P11.22) WILD-TYPE
  0                           33                             41
  1                            3                              0
                                vv
clus                             M0 M1 MX
  DEL PEAK 13(8P11.22) MUTATED   43  2 15
  DEL PEAK 13(8P11.22) WILD-TYPE 47  0 10
D38V6, multiclass
    clus
vv   DEL PEAK 13(8P11.22) MUTATED DEL PEAK 13(8P11.22) WILD-TYPE
  M0                           43                             47
  M1                            2                              0
  MX                           15                             10
D38V7, binary
                                cls
clus                              0  1
  DEL PEAK 13(8P11.22) MUTATED   21 39
  DEL PEAK 13(8P11.22) WILD-TYPE 23 34
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(8P11.22) MUTATED     21   39
  DEL PEAK 13(8P11.22) WILD-TYPE   23   34
        clus
vv       DEL PEAK 13(8P11.22) MUTATED DEL PEAK 13(8P11.22) WILD-TYPE
  FEMALE                           21                             23
  MALE                             39                             34
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 13(8P11.22) MUTATED   46  5  1  4
  DEL PEAK 13(8P11.22) WILD-TYPE 47  5  0  4
D38V8, multiclass
    clus
vv   DEL PEAK 13(8P11.22) MUTATED DEL PEAK 13(8P11.22) WILD-TYPE
  R0                           46                             47
  R1                            5                              5
  R2                            1                              0
  RX                            4                              4

Clustering(39) Variable = DEL PEAK 14(9P21.3) MUTATION ANALYSIS
D39V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 14(9P21.3) MUTATED   23 20
  DEL PEAK 14(9P21.3) WILD-TYPE 38 33
  DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE 
                           43                            71 
  DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE 
                           20                            33 
$`DEL PEAK 14(9P21.3) MUTATED`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10U 
       48.99        27.91        37.32        10.13        46.78        27.52 
TCGA-BC-A112 TCGA-BC-A3KF TCGA-BC-A5W4 TCGA-CC-5258 TCGA-CC-5263 TCGA-CC-A1HT 
        5.03         0.26         9.50         0.07         4.24         3.32 
TCGA-CC-A3M9 TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A115 TCGA-DD-A116 
        0.10         0.10         0.13        79.73        83.57        53.29 
TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A1EI TCGA-DD-A1EJ 
        7.33         2.60         0.46        21.76         6.02        29.16 
TCGA-DD-A1EL TCGA-DD-A39X TCGA-DD-A3A0 TCGA-DD-A3A9 TCGA-DD-A4ND TCGA-DD-A4NG 
       13.64        55.66        25.81        30.58        73.38        14.93 
TCGA-DD-A4NO TCGA-ED-A459 TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3RK 
       61.45         0.23        11.74         1.97         0.62         0.43 
TCGA-FV-A23B TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A4ZP TCGA-G3-A25S TCGA-G3-A25T 
       32.45         0.20         6.35        60.36         1.22        51.02 
TCGA-G3-A3CJ 
       19.53 

$`DEL PEAK 14(9P21.3) WILD-TYPE`
TCGA-BC-A10T TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 
       27.52         2.99        25.32        23.34         1.12        69.57 
TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KG TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 
       44.42        13.81        16.37         2.86         3.02         3.39 
TCGA-CC-A3MA TCGA-DD-A114 TCGA-DD-A118 TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA 
        0.07        37.74       112.96        51.25        90.67        79.36 
TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EH 
       66.31        19.76        75.65         6.67        12.95        49.15 
TCGA-DD-A39V TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 
       21.14         5.59        19.73         7.66        70.06        17.59 
TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A4NA 
       20.12       102.74       107.11        13.78         0.36        33.14 
TCGA-DD-A4NE TCGA-DD-A4NF TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NK 
       21.67        14.07        14.24        10.78        15.06        39.75 
TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-ED-A5KG TCGA-EP-A12J 
       56.25        29.56        93.67        12.26         0.20        10.85 
TCGA-EP-A26S TCGA-EP-A3JL TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 
        7.76         3.19        23.01        14.40        19.07         0.13 
TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZQ TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W 
        0.03         0.33         0.39        53.79        28.27        30.71 
TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI 
       58.49        14.86        21.53        22.13        25.64         5.88 
TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SK TCGA-G3-A5SL TCGA-G3-A5SM 
       19.23        11.97         9.93         7.99         4.37 

  DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE 
                         0.07                          0.03 
  DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE 
                        83.57                        112.96 
  DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE 
                        11.74                         19.07 
[1] "0.1 - 83.6 (11.7)"  "0.0 - 113.0 (19.1)"
                   TCGA-BC-4072                    TCGA-BC-4073 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
[1] "hr=" "1.3"
D39V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 14(9P21.3) MUTATED        13        8         0         14
  DEL PEAK 14(9P21.3) WILD-TYPE      32       17         2         11
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 14(9P21.3) MUTATED            0          1        1         1
  DEL PEAK 14(9P21.3) WILD-TYPE          3          3        0         0
                               vv
clus                            STAGE IVB
  DEL PEAK 14(9P21.3) MUTATED           1
  DEL PEAK 14(9P21.3) WILD-TYPE         0
D39V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 14(9P21.3) MUTATED   15 10 18  1
  DEL PEAK 14(9P21.3) WILD-TYPE 33 18 16  5
D39V4, multiclass
    clus
vv   DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  T1                          15                            33
  T2                          10                            18
  T3                          18                            16
  T4                           1                             5
D39V5, binary
                               cls
clus                             0  1
  DEL PEAK 14(9P21.3) MUTATED   26  2
  DEL PEAK 14(9P21.3) WILD-TYPE 48  1
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(9P21.3) MUTATED     26    2
  DEL PEAK 14(9P21.3) WILD-TYPE   48    1
   clus
vv  DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  0                          26                            48
  1                           2                             1
                               vv
clus                            M0 M1 MX
  DEL PEAK 14(9P21.3) MUTATED   30  2 13
  DEL PEAK 14(9P21.3) WILD-TYPE 60  0 12
D39V6, multiclass
    clus
vv   DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  M0                          30                            60
  M1                           2                             0
  MX                          13                            12
D39V7, binary
                               cls
clus                             0  1
  DEL PEAK 14(9P21.3) MUTATED   15 30
  DEL PEAK 14(9P21.3) WILD-TYPE 29 43
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(9P21.3) MUTATED     15   30
  DEL PEAK 14(9P21.3) WILD-TYPE   29   43
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  FEMALE                          15                            29
  MALE                            30                            43
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK 14(9P21.3) MUTATED   31  7  1  4
  DEL PEAK 14(9P21.3) WILD-TYPE 62  3  0  4
D39V8, multiclass
    clus
vv   DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  R0                          31                            62
  R1                           7                             3
  R2                           1                             0
  RX                           4                             4

Clustering(40) Variable = DEL PEAK 15(9Q34.3) MUTATION ANALYSIS
D40V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 15(9Q34.3) MUTATED   23 18
  DEL PEAK 15(9Q34.3) WILD-TYPE 38 35
  DEL PEAK 15(9Q34.3) MUTATED DEL PEAK 15(9Q34.3) WILD-TYPE 
                           41                            73 
  DEL PEAK 15(9Q34.3) MUTATED DEL PEAK 15(9Q34.3) WILD-TYPE 
                           18                            35 
$`DEL PEAK 15(9Q34.3) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A112 TCGA-BC-A217 
       37.32        10.13        46.78        27.52         5.03        13.81 
TCGA-BC-A5W4 TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MB 
        9.50         0.07         2.86         3.32         0.10         0.10 
TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 
        0.13        79.73        83.57        53.29       112.96         7.33 
TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A1EB TCGA-DD-A1EH TCGA-DD-A1EI 
        2.60         0.46        21.76        66.31        49.15         6.02 
TCGA-DD-A1EJ TCGA-DD-A39X TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4NE TCGA-DD-A4NJ 
       29.16        55.66        30.58        33.14        21.67        15.06 
TCGA-DD-A4NO TCGA-ED-A459 TCGA-EP-A3RK TCGA-ES-A2HS TCGA-FV-A3I0 TCGA-FV-A3R2 
       61.45         0.23         0.43        23.01         0.20         6.35 
TCGA-FV-A3R3 TCGA-FV-A496 TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A3CH 
        0.13         0.33         1.22        51.02        25.64 

$`DEL PEAK 15(9Q34.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10T TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y 
       48.99        27.91        27.52         2.99        25.32        23.34 
TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A216 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-CC-5261 
        1.12        69.57        44.42         0.26        16.37         3.02 
TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A3MA TCGA-DD-A114 TCGA-DD-A11D TCGA-DD-A1E9 
        3.39         4.24         0.07        37.74        51.25        90.67 
TCGA-DD-A1EA TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EL 
       79.36        19.76        75.65         6.67        12.95        13.64 
TCGA-DD-A39V TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 
       21.14         5.59        19.73        25.81         7.66        70.06 
TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 
       17.59        20.12       102.74       107.11        13.78         0.36 
TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NG TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NK 
       73.38        14.07        14.93        14.24        10.78        39.75 
TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-ED-A5KG TCGA-EP-A12J 
       56.25        29.56        93.67        12.26         0.20        10.85 
TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL TCGA-ES-A2HT 
        7.76        11.74         1.97         0.62         3.19        14.40 
TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A495 TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25U 
       32.45        19.07         0.03        60.36         0.39        53.79 
TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG 
       28.27        30.71        58.49        14.86        21.53        22.13 
TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SK TCGA-G3-A5SL 
        5.88        19.53        19.23        11.97         9.93         7.99 
TCGA-G3-A5SM 
        4.37 

  DEL PEAK 15(9Q34.3) MUTATED DEL PEAK 15(9Q34.3) WILD-TYPE 
                         0.07                          0.03 
  DEL PEAK 15(9Q34.3) MUTATED DEL PEAK 15(9Q34.3) WILD-TYPE 
                       112.96                        107.11 
  DEL PEAK 15(9Q34.3) MUTATED DEL PEAK 15(9Q34.3) WILD-TYPE 
                        13.81                         17.59 
[1] "0.1 - 113.0 (13.8)" "0.0 - 107.1 (17.6)"
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK 15(9Q34.3) WILD-TYPE"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK 15(9Q34.3) WILD-TYPE"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"DEL PEAK 15(9Q34.3) WILD-TYPE"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"DEL PEAK 15(9Q34.3) WILD-TYPE"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"DEL PEAK 15(9Q34.3) WILD-TYPE"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK 15(9Q34.3) WILD-TYPE"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"DEL PEAK 15(9Q34.3) WILD-TYPE"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK 15(9Q34.3) WILD-TYPE"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK 15(9Q34.3) WILD-TYPE"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"DEL PEAK 15(9Q34.3) WILD-TYPE"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"DEL PEAK 15(9Q34.3) WILD-TYPE"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"DEL PEAK 15(9Q34.3) WILD-TYPE"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK 15(9Q34.3) WILD-TYPE"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"DEL PEAK 15(9Q34.3) WILD-TYPE"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-BC-A5W4 
"DEL PEAK 15(9Q34.3) WILD-TYPE"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-CC-5258                    TCGA-CC-5260 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-CC-5261                    TCGA-CC-5262 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-CC-A1HT 
"DEL PEAK 15(9Q34.3) WILD-TYPE"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-CC-A3M9                    TCGA-CC-A3MA 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CC-A3MB                    TCGA-CC-A3MC 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-DD-A113                    TCGA-DD-A114 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A115                    TCGA-DD-A116 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-DD-A118                    TCGA-DD-A119 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-DD-A11A                    TCGA-DD-A11B 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-DD-A11C                    TCGA-DD-A11D 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A1E9                    TCGA-DD-A1EA 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A1EB                    TCGA-DD-A1EC 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A1ED                    TCGA-DD-A1EE 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A1EF                    TCGA-DD-A1EH 
"DEL PEAK 15(9Q34.3) WILD-TYPE"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-DD-A1EI                    TCGA-DD-A1EJ 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-DD-A1EL                    TCGA-DD-A39V 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A39X                    TCGA-DD-A39Y 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A39Z                    TCGA-DD-A3A0 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A3A1                    TCGA-DD-A3A2 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A3A3                    TCGA-DD-A3A4 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A3A5                    TCGA-DD-A3A6 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A3A7                    TCGA-DD-A3A8 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A3A9                    TCGA-DD-A4NA 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-DD-A4ND                    TCGA-DD-A4NE 
"DEL PEAK 15(9Q34.3) WILD-TYPE"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-DD-A4NF                    TCGA-DD-A4NG 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A4NH                    TCGA-DD-A4NI 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A4NJ                    TCGA-DD-A4NK 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A4NL                    TCGA-DD-A4NN 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A4NO                    TCGA-DD-A4NP 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DD-A4NQ                    TCGA-ED-A459 
"DEL PEAK 15(9Q34.3) WILD-TYPE"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-ED-A5KG                    TCGA-EP-A12J 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-EP-A26S                    TCGA-EP-A2KA 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-EP-A2KB                    TCGA-EP-A2KC 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-EP-A3JL                    TCGA-EP-A3RK 
"DEL PEAK 15(9Q34.3) WILD-TYPE"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-ES-A2HS                    TCGA-ES-A2HT 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-FV-A23B                    TCGA-FV-A2QR 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-FV-A3I0                    TCGA-FV-A3R2 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-FV-A3R3                    TCGA-FV-A495 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-FV-A496                    TCGA-FV-A4ZP 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-FV-A4ZQ                    TCGA-G3-A25S 
"DEL PEAK 15(9Q34.3) WILD-TYPE"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-G3-A25T                    TCGA-G3-A25U 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-G3-A25V                    TCGA-G3-A25W 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-G3-A25X                    TCGA-G3-A25Y 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-G3-A25Z                    TCGA-G3-A3CG 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-G3-A3CH                    TCGA-G3-A3CI 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-G3-A3CJ                    TCGA-G3-A3CK 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-G3-A5SJ                    TCGA-G3-A5SK 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-G3-A5SL                    TCGA-G3-A5SM 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
[1] "hr=" "1"  
D40V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 15(9Q34.3) MUTATED        12        8         1         10
  DEL PEAK 15(9Q34.3) WILD-TYPE      33       17         1         15
                               vv
clus                            STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 15(9Q34.3) MUTATED            0          3        1         1
  DEL PEAK 15(9Q34.3) WILD-TYPE          3          1        0         0
                               vv
clus                            STAGE IVB
  DEL PEAK 15(9Q34.3) MUTATED           1
  DEL PEAK 15(9Q34.3) WILD-TYPE         0
D40V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 15(9Q34.3) MUTATED   14 11 15  2
  DEL PEAK 15(9Q34.3) WILD-TYPE 34 17 19  4
D40V4, multiclass
    clus
vv   DEL PEAK 15(9Q34.3) MUTATED DEL PEAK 15(9Q34.3) WILD-TYPE
  T1                          14                            34
  T2                          11                            17
  T3                          15                            19
  T4                           2                             4
D40V5, binary
                               cls
clus                             0  1
  DEL PEAK 15(9Q34.3) MUTATED   26  3
  DEL PEAK 15(9Q34.3) WILD-TYPE 48  0
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(9Q34.3) MUTATED     26    3
  DEL PEAK 15(9Q34.3) WILD-TYPE   48    0
   clus
vv  DEL PEAK 15(9Q34.3) MUTATED DEL PEAK 15(9Q34.3) WILD-TYPE
  0                          26                            48
  1                           3                             0
                               vv
clus                            M0 M1 MX
  DEL PEAK 15(9Q34.3) MUTATED   30  2 11
  DEL PEAK 15(9Q34.3) WILD-TYPE 60  0 14
D40V6, multiclass
    clus
vv   DEL PEAK 15(9Q34.3) MUTATED DEL PEAK 15(9Q34.3) WILD-TYPE
  M0                          30                            60
  M1                           2                             0
  MX                          11                            14
D40V7, binary
                               cls
clus                             0  1
  DEL PEAK 15(9Q34.3) MUTATED   18 25
  DEL PEAK 15(9Q34.3) WILD-TYPE 26 48
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(9Q34.3) MUTATED     18   25
  DEL PEAK 15(9Q34.3) WILD-TYPE   26   48
        clus
vv       DEL PEAK 15(9Q34.3) MUTATED DEL PEAK 15(9Q34.3) WILD-TYPE
  FEMALE                          18                            26
  MALE                            25                            48
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK 15(9Q34.3) MUTATED   32  4  1  4
  DEL PEAK 15(9Q34.3) WILD-TYPE 61  6  0  4
D40V8, multiclass
    clus
vv   DEL PEAK 15(9Q34.3) MUTATED DEL PEAK 15(9Q34.3) WILD-TYPE
  R0                          32                            61
  R1                           4                             6
  R2                           1                             0
  RX                           4                             4

Clustering(41) Variable = DEL PEAK 16(10Q23.31) MUTATION ANALYSIS
D41V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 16(10Q23.31) MUTATED   20 14
  DEL PEAK 16(10Q23.31) WILD-TYPE 41 39
  DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE 
                             34                              80 
  DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE 
                             14                              39 
$`DEL PEAK 16(10Q23.31) MUTATED`
TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10W TCGA-BC-A10Y TCGA-BC-A216 
       27.91        37.32        10.13         2.99        23.34        44.42 
TCGA-BC-A217 TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-CC-5260 TCGA-CC-5263 TCGA-CC-A1HT 
       13.81        16.37         9.50         2.86         4.24         3.32 
TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A118 
        0.07         0.10         0.13        37.74        83.57       112.96 
TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1EL TCGA-DD-A3A0 TCGA-DD-A4NA TCGA-DD-A4NE 
        2.60        21.76        13.64        25.81        33.14        21.67 
TCGA-DD-A4NQ TCGA-ED-A459 TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A496 TCGA-G3-A25T 
       12.26         0.23        19.07         0.20         0.33        51.02 
TCGA-G3-A25U TCGA-G3-A25X TCGA-G3-A5SJ TCGA-G3-A5SK 
       53.79        58.49        11.97         9.93 

$`DEL PEAK 16(10Q23.31) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10X TCGA-BC-A10Z 
       48.99        46.78        27.52        27.52        25.32         1.12 
TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A3KF TCGA-CC-5258 TCGA-CC-5261 TCGA-CC-5262 
       69.57         5.03         0.26         0.07         3.02         3.39 
TCGA-CC-A3M9 TCGA-DD-A113 TCGA-DD-A116 TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11D 
        0.10        79.73        53.29         7.33         0.46        51.25 
TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE 
       90.67        79.36        66.31        19.76        75.65         6.67 
TCGA-DD-A1EF TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A39V TCGA-DD-A39X 
       12.95        49.15         6.02        29.16        21.14        55.66 
TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 
        5.59        19.73         7.66        70.06        17.59        20.12 
TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4ND 
      102.74       107.11        13.78         0.36        30.58        73.38 
TCGA-DD-A4NF TCGA-DD-A4NG TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NK 
       14.07        14.93        14.24        10.78        15.06        39.75 
TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NP TCGA-ED-A5KG TCGA-EP-A12J 
       56.25        29.56        61.45        93.67         0.20        10.85 
TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK 
        7.76        11.74         1.97         0.62         3.19         0.43 
TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A495 
       23.01        14.40        32.45         6.35         0.13         0.03 
TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Y 
       60.36         0.39         1.22        28.27        30.71        14.86 
TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK 
       21.53        22.13        25.64         5.88        19.53        19.23 
TCGA-G3-A5SL TCGA-G3-A5SM 
        7.99         4.37 

  DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE 
                           0.07                            0.03 
  DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE 
                         112.96                          107.11 
  DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE 
                         13.725                          18.410 
[1] "0.1 - 113.0 (13.7)" "0.0 - 107.1 (18.4)"
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "DEL PEAK 16(10Q23.31) MUTATED"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 16(10Q23.31) MUTATED" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
  "DEL PEAK 16(10Q23.31) MUTATED"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-CC-5261                      TCGA-CC-5262 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
  "DEL PEAK 16(10Q23.31) MUTATED"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
  "DEL PEAK 16(10Q23.31) MUTATED"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-DD-A113                      TCGA-DD-A114 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-DD-A115                      TCGA-DD-A116 
  "DEL PEAK 16(10Q23.31) MUTATED" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
  "DEL PEAK 16(10Q23.31) MUTATED" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
  "DEL PEAK 16(10Q23.31) MUTATED" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
  "DEL PEAK 16(10Q23.31) MUTATED" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EH 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EI                      TCGA-DD-A1EJ 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
  "DEL PEAK 16(10Q23.31) MUTATED" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-DD-A4ND                      TCGA-DD-A4NE 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NG 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NH                      TCGA-DD-A4NI 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NJ                      TCGA-DD-A4NK 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NL                      TCGA-DD-A4NN 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NO                      TCGA-DD-A4NP 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NQ                      TCGA-ED-A459 
  "DEL PEAK 16(10Q23.31) MUTATED"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-ED-A5KG                      TCGA-EP-A12J 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-FV-A3I0                      TCGA-FV-A3R2 
  "DEL PEAK 16(10Q23.31) MUTATED" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-FV-A3R3                      TCGA-FV-A495 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-FV-A496                      TCGA-FV-A4ZP 
  "DEL PEAK 16(10Q23.31) MUTATED" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-FV-A4ZQ                      TCGA-G3-A25S 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
  "DEL PEAK 16(10Q23.31) MUTATED"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
  "DEL PEAK 16(10Q23.31) MUTATED" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SK 
  "DEL PEAK 16(10Q23.31) MUTATED"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-G3-A5SL                      TCGA-G3-A5SM 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "DEL PEAK 16(10Q23.31) MUTATED"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 16(10Q23.31) MUTATED" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
  "DEL PEAK 16(10Q23.31) MUTATED"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-CC-5261                      TCGA-CC-5262 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
  "DEL PEAK 16(10Q23.31) MUTATED"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
  "DEL PEAK 16(10Q23.31) MUTATED"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-DD-A113                      TCGA-DD-A114 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-DD-A115                      TCGA-DD-A116 
  "DEL PEAK 16(10Q23.31) MUTATED" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
  "DEL PEAK 16(10Q23.31) MUTATED" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
  "DEL PEAK 16(10Q23.31) MUTATED" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
  "DEL PEAK 16(10Q23.31) MUTATED" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EH 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EI                      TCGA-DD-A1EJ 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
  "DEL PEAK 16(10Q23.31) MUTATED" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-DD-A4ND                      TCGA-DD-A4NE 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NG 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NH                      TCGA-DD-A4NI 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NJ                      TCGA-DD-A4NK 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NL                      TCGA-DD-A4NN 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NO                      TCGA-DD-A4NP 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NQ                      TCGA-ED-A459 
  "DEL PEAK 16(10Q23.31) MUTATED"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-ED-A5KG                      TCGA-EP-A12J 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-FV-A3I0                      TCGA-FV-A3R2 
  "DEL PEAK 16(10Q23.31) MUTATED" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-FV-A3R3                      TCGA-FV-A495 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-FV-A496                      TCGA-FV-A4ZP 
  "DEL PEAK 16(10Q23.31) MUTATED" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-FV-A4ZQ                      TCGA-G3-A25S 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
  "DEL PEAK 16(10Q23.31) MUTATED"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
  "DEL PEAK 16(10Q23.31) MUTATED" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SK 
  "DEL PEAK 16(10Q23.31) MUTATED"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-G3-A5SL                      TCGA-G3-A5SM 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "DEL PEAK 16(10Q23.31) MUTATED"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 16(10Q23.31) MUTATED" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
  "DEL PEAK 16(10Q23.31) MUTATED"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-CC-5261                      TCGA-CC-5262 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
  "DEL PEAK 16(10Q23.31) MUTATED"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
  "DEL PEAK 16(10Q23.31) MUTATED"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-DD-A113                      TCGA-DD-A114 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-DD-A115                      TCGA-DD-A116 
  "DEL PEAK 16(10Q23.31) MUTATED" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
  "DEL PEAK 16(10Q23.31) MUTATED" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
  "DEL PEAK 16(10Q23.31) MUTATED" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
  "DEL PEAK 16(10Q23.31) MUTATED" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EH 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EI                      TCGA-DD-A1EJ 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
  "DEL PEAK 16(10Q23.31) MUTATED" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-DD-A4ND                      TCGA-DD-A4NE 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NG 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NH                      TCGA-DD-A4NI 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NJ                      TCGA-DD-A4NK 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NL                      TCGA-DD-A4NN 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NO                      TCGA-DD-A4NP 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A4NQ                      TCGA-ED-A459 
  "DEL PEAK 16(10Q23.31) MUTATED"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-ED-A5KG                      TCGA-EP-A12J 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"DEL PEAK 16(10Q23.31) WILD-TYPE"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-FV-A3I0                      TCGA-FV-A3R2 
  "DEL PEAK 16(10Q23.31) MUTATED" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-FV-A3R3                      TCGA-FV-A495 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-FV-A496                      TCGA-FV-A4ZP 
  "DEL PEAK 16(10Q23.31) MUTATED" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-FV-A4ZQ                      TCGA-G3-A25S 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
  "DEL PEAK 16(10Q23.31) MUTATED"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
  "DEL PEAK 16(10Q23.31) MUTATED" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SK 
  "DEL PEAK 16(10Q23.31) MUTATED"   "DEL PEAK 16(10Q23.31) MUTATED" 
                     TCGA-G3-A5SL                      TCGA-G3-A5SM 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
[1] "hr=" "1"  
D41V2, continuous
                                 vv
clus                              STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 16(10Q23.31) MUTATED         8        9         0         11
  DEL PEAK 16(10Q23.31) WILD-TYPE      37       16         2         14
                                 vv
clus                              STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 16(10Q23.31) MUTATED            0          2        0         1
  DEL PEAK 16(10Q23.31) WILD-TYPE          3          2        1         0
                                 vv
clus                              STAGE IVB
  DEL PEAK 16(10Q23.31) MUTATED           0
  DEL PEAK 16(10Q23.31) WILD-TYPE         1
D41V3, multiclass
                                 vv
clus                              T1 T2 T3 T4
  DEL PEAK 16(10Q23.31) MUTATED    9 11 12  3
  DEL PEAK 16(10Q23.31) WILD-TYPE 39 17 22  3
D41V4, multiclass
    clus
vv   DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  T1                             9                              39
  T2                            11                              17
  T3                            12                              22
  T4                             3                               3
D41V5, binary
                                 cls
clus                               0  1
  DEL PEAK 16(10Q23.31) MUTATED   21  2
  DEL PEAK 16(10Q23.31) WILD-TYPE 53  1
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 16(10Q23.31) MUTATED     21    2
  DEL PEAK 16(10Q23.31) WILD-TYPE   53    1
   clus
vv  DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  0                            21                              53
  1                             2                               1
                                 vv
clus                              M0 M1 MX
  DEL PEAK 16(10Q23.31) MUTATED   30  0  6
  DEL PEAK 16(10Q23.31) WILD-TYPE 60  2 19
D41V6, multiclass
    clus
vv   DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  M0                            30                              60
  M1                             0                               2
  MX                             6                              19
D41V7, binary
                                 cls
clus                               0  1
  DEL PEAK 16(10Q23.31) MUTATED   13 23
  DEL PEAK 16(10Q23.31) WILD-TYPE 31 50
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 16(10Q23.31) MUTATED     13   23
  DEL PEAK 16(10Q23.31) WILD-TYPE   31   50
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  FEMALE                            13                              31
  MALE                              23                              50
                                 vv
clus                              R0 R1 R2 RX
  DEL PEAK 16(10Q23.31) MUTATED   26  4  0  5
  DEL PEAK 16(10Q23.31) WILD-TYPE 67  6  1  3
D41V8, multiclass
    clus
vv   DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  R0                            26                              67
  R1                             4                               6
  R2                             0                               1
  RX                             5                               3

Clustering(42) Variable = DEL PEAK 17(11Q23.3) MUTATION ANALYSIS
D42V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 17(11Q23.3) MUTATED   11 11
  DEL PEAK 17(11Q23.3) WILD-TYPE 50 42
  DEL PEAK 17(11Q23.3) MUTATED DEL PEAK 17(11Q23.3) WILD-TYPE 
                            22                             92 
  DEL PEAK 17(11Q23.3) MUTATED DEL PEAK 17(11Q23.3) WILD-TYPE 
                            11                             42 
$`DEL PEAK 17(11Q23.3) MUTATED`
TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A112 TCGA-BC-A3KF TCGA-CC-5263 
       27.91        37.32        46.78         5.03         0.26         4.24 
TCGA-CC-A3MA TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A11A TCGA-DD-A1E9 TCGA-DD-A1EJ 
        0.07         0.13        79.73         2.60        90.67        29.16 
TCGA-DD-A39X TCGA-DD-A4ND TCGA-DD-A4NE TCGA-DD-A4NN TCGA-EP-A2KC TCGA-FV-A3I0 
       55.66        73.38        21.67        29.56         0.62         0.20 
TCGA-FV-A4ZP TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A5SJ 
       60.36         1.22        53.79        11.97 

$`DEL PEAK 17(11Q23.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X 
       48.99        10.13        27.52        27.52         2.99        25.32 
TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KG 
       23.34         1.12        69.57        44.42        13.81        16.37 
TCGA-BC-A5W4 TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-A1HT 
        9.50         0.07         2.86         3.02         3.39         3.32 
TCGA-CC-A3M9 TCGA-CC-A3MB TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 
        0.10         0.10        37.74        83.57        53.29       112.96 
TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1EA TCGA-DD-A1EB 
        7.33         0.46        21.76        51.25        79.36        66.31 
TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EH TCGA-DD-A1EI 
       19.76        75.65         6.67        12.95        49.15         6.02 
TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 
       13.64        21.14         5.59        19.73        25.81         7.66 
TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 
       70.06        17.59        20.12       102.74       107.11        13.78 
TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4NF TCGA-DD-A4NG TCGA-DD-A4NH 
        0.36        30.58        33.14        14.07        14.93        14.24 
TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NO TCGA-DD-A4NP 
       10.78        15.06        39.75        56.25        61.45        93.67 
TCGA-DD-A4NQ TCGA-ED-A459 TCGA-ED-A5KG TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA 
       12.26         0.23         0.20        10.85         7.76        11.74 
TCGA-EP-A2KB TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A23B 
        1.97         3.19         0.43        23.01        14.40        32.45 
TCGA-FV-A2QR TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZQ 
       19.07         6.35         0.13         0.03         0.33         0.39 
TCGA-G3-A25T TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z 
       51.02        28.27        30.71        58.49        14.86        21.53 
TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SK 
       22.13        25.64         5.88        19.53        19.23         9.93 
TCGA-G3-A5SL TCGA-G3-A5SM 
        7.99         4.37 

  DEL PEAK 17(11Q23.3) MUTATED DEL PEAK 17(11Q23.3) WILD-TYPE 
                          0.07                           0.03 
  DEL PEAK 17(11Q23.3) MUTATED DEL PEAK 17(11Q23.3) WILD-TYPE 
                         90.67                         112.96 
  DEL PEAK 17(11Q23.3) MUTATED DEL PEAK 17(11Q23.3) WILD-TYPE 
                        24.790                         14.995 
[1] "0.1 - 90.7 (24.8)"  "0.0 - 113.0 (15.0)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 17(11Q23.3) WILD-TYPE"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 17(11Q23.3) MUTATED" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK 17(11Q23.3) MUTATED" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 17(11Q23.3) MUTATED" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 17(11Q23.3) WILD-TYPE"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 17(11Q23.3) MUTATED" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 17(11Q23.3) WILD-TYPE"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 17(11Q23.3) WILD-TYPE"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 17(11Q23.3) MUTATED" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 17(11Q23.3) MUTATED" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "DEL PEAK 17(11Q23.3) MUTATED" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"DEL PEAK 17(11Q23.3) WILD-TYPE"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 17(11Q23.3) MUTATED" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
  "DEL PEAK 17(11Q23.3) MUTATED"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 17(11Q23.3) WILD-TYPE"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 17(11Q23.3) WILD-TYPE"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "DEL PEAK 17(11Q23.3) MUTATED" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"DEL PEAK 17(11Q23.3) WILD-TYPE"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK 17(11Q23.3) WILD-TYPE"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 17(11Q23.3) WILD-TYPE"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
  "DEL PEAK 17(11Q23.3) MUTATED" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 17(11Q23.3) WILD-TYPE"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 17(11Q23.3) MUTATED" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK 17(11Q23.3) MUTATED" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 17(11Q23.3) MUTATED" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 17(11Q23.3) WILD-TYPE"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 17(11Q23.3) MUTATED" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 17(11Q23.3) WILD-TYPE"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 17(11Q23.3) WILD-TYPE"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 17(11Q23.3) MUTATED" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 17(11Q23.3) MUTATED" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "DEL PEAK 17(11Q23.3) MUTATED" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"DEL PEAK 17(11Q23.3) WILD-TYPE"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 17(11Q23.3) MUTATED" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
  "DEL PEAK 17(11Q23.3) MUTATED"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 17(11Q23.3) WILD-TYPE"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 17(11Q23.3) WILD-TYPE"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "DEL PEAK 17(11Q23.3) MUTATED" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"DEL PEAK 17(11Q23.3) WILD-TYPE"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK 17(11Q23.3) WILD-TYPE"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 17(11Q23.3) WILD-TYPE"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
  "DEL PEAK 17(11Q23.3) MUTATED" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 17(11Q23.3) WILD-TYPE"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 17(11Q23.3) MUTATED" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK 17(11Q23.3) MUTATED" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 17(11Q23.3) MUTATED" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 17(11Q23.3) WILD-TYPE"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 17(11Q23.3) MUTATED" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 17(11Q23.3) WILD-TYPE"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 17(11Q23.3) WILD-TYPE"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 17(11Q23.3) MUTATED" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 17(11Q23.3) MUTATED" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "DEL PEAK 17(11Q23.3) MUTATED" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"DEL PEAK 17(11Q23.3) WILD-TYPE"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 17(11Q23.3) MUTATED" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
  "DEL PEAK 17(11Q23.3) MUTATED"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 17(11Q23.3) WILD-TYPE"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 17(11Q23.3) WILD-TYPE"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "DEL PEAK 17(11Q23.3) MUTATED" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"DEL PEAK 17(11Q23.3) WILD-TYPE"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK 17(11Q23.3) WILD-TYPE"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 17(11Q23.3) WILD-TYPE"   "DEL PEAK 17(11Q23.3) MUTATED" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
  "DEL PEAK 17(11Q23.3) MUTATED" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"DEL PEAK 17(11Q23.3) WILD-TYPE" "DEL PEAK 17(11Q23.3) WILD-TYPE" 
[1] "hr=" "1"  
D42V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 17(11Q23.3) MUTATED        10        2         0          7
  DEL PEAK 17(11Q23.3) WILD-TYPE      35       23         2         18
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 17(11Q23.3) MUTATED            0          1        0         1
  DEL PEAK 17(11Q23.3) WILD-TYPE          3          3        1         0
                                vv
clus                             STAGE IVB
  DEL PEAK 17(11Q23.3) MUTATED           0
  DEL PEAK 17(11Q23.3) WILD-TYPE         1
D42V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 17(11Q23.3) MUTATED   12  3  9  0
  DEL PEAK 17(11Q23.3) WILD-TYPE 36 25 25  6
D42V4, multiclass
    clus
vv   DEL PEAK 17(11Q23.3) MUTATED DEL PEAK 17(11Q23.3) WILD-TYPE
  T1                           12                             36
  T2                            3                             25
  T3                            9                             25
  T4                            0                              6
D42V5, binary
                                cls
clus                              0  1
  DEL PEAK 17(11Q23.3) MUTATED   13  2
  DEL PEAK 17(11Q23.3) WILD-TYPE 61  1
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(11Q23.3) MUTATED     13    2
  DEL PEAK 17(11Q23.3) WILD-TYPE   61    1
   clus
vv  DEL PEAK 17(11Q23.3) MUTATED DEL PEAK 17(11Q23.3) WILD-TYPE
  0                           13                             61
  1                            2                              1
                                vv
clus                             M0 M1 MX
  DEL PEAK 17(11Q23.3) MUTATED   18  0  6
  DEL PEAK 17(11Q23.3) WILD-TYPE 72  2 19
D42V6, multiclass
    clus
vv   DEL PEAK 17(11Q23.3) MUTATED DEL PEAK 17(11Q23.3) WILD-TYPE
  M0                           18                             72
  M1                            0                              2
  MX                            6                             19
D42V7, binary
                                cls
clus                              0  1
  DEL PEAK 17(11Q23.3) MUTATED   10 14
  DEL PEAK 17(11Q23.3) WILD-TYPE 34 59
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(11Q23.3) MUTATED     10   14
  DEL PEAK 17(11Q23.3) WILD-TYPE   34   59
        clus
vv       DEL PEAK 17(11Q23.3) MUTATED DEL PEAK 17(11Q23.3) WILD-TYPE
  FEMALE                           10                             34
  MALE                             14                             59
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 17(11Q23.3) MUTATED   18  4  0  2
  DEL PEAK 17(11Q23.3) WILD-TYPE 75  6  1  6
D42V8, multiclass
    clus
vv   DEL PEAK 17(11Q23.3) MUTATED DEL PEAK 17(11Q23.3) WILD-TYPE
  R0                           18                             75
  R1                            4                              6
  R2                            0                              1
  RX                            2                              6

Clustering(43) Variable = DEL PEAK 18(12P12.1) MUTATION ANALYSIS
D43V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 18(12P12.1) MUTATED   13 12
  DEL PEAK 18(12P12.1) WILD-TYPE 48 41
  DEL PEAK 18(12P12.1) MUTATED DEL PEAK 18(12P12.1) WILD-TYPE 
                            25                             89 
  DEL PEAK 18(12P12.1) MUTATED DEL PEAK 18(12P12.1) WILD-TYPE 
                            12                             41 
$`DEL PEAK 18(12P12.1) MUTATED`
TCGA-BC-4073 TCGA-BC-A10Y TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A5W4 TCGA-CC-A1HT 
       27.91        23.34        13.81         0.26         9.50         3.32 
TCGA-CC-A3MA TCGA-CC-A3MC TCGA-DD-A119 TCGA-DD-A1EH TCGA-DD-A1EJ TCGA-DD-A1EL 
        0.07         0.13         7.33        49.15        29.16        13.64 
TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A3A1 TCGA-DD-A3A7 TCGA-DD-A4NA TCGA-DD-A4NH 
       55.66         5.59         7.66        13.78        33.14        14.24 
TCGA-DD-A4NJ TCGA-DD-A4NO TCGA-EP-A2KC TCGA-FV-A3R2 TCGA-FV-A496 TCGA-G3-A25S 
       15.06        61.45         0.62         6.35         0.33         1.22 
TCGA-G3-A25Z 
       21.53 

$`DEL PEAK 18(12P12.1) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U 
       48.99        37.32        10.13        46.78        27.52        27.52 
TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 
        2.99        25.32         1.12        69.57         5.03        44.42 
TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 
       16.37         0.07         2.86         3.02         3.39         4.24 
TCGA-CC-A3M9 TCGA-CC-A3MB TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 
        0.10         0.10        79.73        37.74        83.57        53.29 
TCGA-DD-A118 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 
      112.96         2.60         0.46        21.76        51.25        90.67 
TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF 
       79.36        66.31        19.76        75.65         6.67        12.95 
TCGA-DD-A1EI TCGA-DD-A39V TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A2 TCGA-DD-A3A3 
        6.02        21.14        19.73        25.81        70.06        17.59 
TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4ND 
       20.12       102.74       107.11         0.36        30.58        73.38 
TCGA-DD-A4NE TCGA-DD-A4NF TCGA-DD-A4NG TCGA-DD-A4NI TCGA-DD-A4NK TCGA-DD-A4NL 
       21.67        14.07        14.93        10.78        39.75        56.25 
TCGA-DD-A4NN TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-ED-A459 TCGA-ED-A5KG TCGA-EP-A12J 
       29.56        93.67        12.26         0.23         0.20        10.85 
TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS 
        7.76        11.74         1.97         3.19         0.43        23.01 
TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3R3 TCGA-FV-A495 
       14.40        32.45        19.07         0.20         0.13         0.03 
TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W 
       60.36         0.39        51.02        53.79        28.27        30.71 
TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ 
       58.49        14.86        22.13        25.64         5.88        19.53 
TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SK TCGA-G3-A5SL TCGA-G3-A5SM 
       19.23        11.97         9.93         7.99         4.37 

  DEL PEAK 18(12P12.1) MUTATED DEL PEAK 18(12P12.1) WILD-TYPE 
                          0.07                           0.03 
  DEL PEAK 18(12P12.1) MUTATED DEL PEAK 18(12P12.1) WILD-TYPE 
                         61.45                         112.96 
  DEL PEAK 18(12P12.1) MUTATED DEL PEAK 18(12P12.1) WILD-TYPE 
                         13.64                          19.53 
[1] "0.1 - 61.5 (13.6)"  "0.0 - 113.0 (19.5)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 18(12P12.1) MUTATED"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 18(12P12.1) MUTATED" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 18(12P12.1) MUTATED"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "DEL PEAK 18(12P12.1) MUTATED" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "DEL PEAK 18(12P12.1) MUTATED" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "DEL PEAK 18(12P12.1) MUTATED" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "DEL PEAK 18(12P12.1) MUTATED" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "DEL PEAK 18(12P12.1) MUTATED" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
  "DEL PEAK 18(12P12.1) MUTATED" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
  "DEL PEAK 18(12P12.1) MUTATED" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 18(12P12.1) MUTATED"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 18(12P12.1) MUTATED" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 18(12P12.1) MUTATED"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "DEL PEAK 18(12P12.1) MUTATED" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "DEL PEAK 18(12P12.1) MUTATED" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "DEL PEAK 18(12P12.1) MUTATED" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "DEL PEAK 18(12P12.1) MUTATED" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "DEL PEAK 18(12P12.1) MUTATED" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
  "DEL PEAK 18(12P12.1) MUTATED" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
  "DEL PEAK 18(12P12.1) MUTATED" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 18(12P12.1) MUTATED"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 18(12P12.1) MUTATED" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 18(12P12.1) MUTATED"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "DEL PEAK 18(12P12.1) MUTATED" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "DEL PEAK 18(12P12.1) MUTATED" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "DEL PEAK 18(12P12.1) MUTATED" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "DEL PEAK 18(12P12.1) MUTATED" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "DEL PEAK 18(12P12.1) MUTATED" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
  "DEL PEAK 18(12P12.1) MUTATED" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK 18(12P12.1) WILD-TYPE"   "DEL PEAK 18(12P12.1) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
  "DEL PEAK 18(12P12.1) MUTATED" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"DEL PEAK 18(12P12.1) WILD-TYPE" "DEL PEAK 18(12P12.1) WILD-TYPE" 
[1] "hr=" "1.7"
D43V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 18(12P12.1) MUTATED         9        4         1          6
  DEL PEAK 18(12P12.1) WILD-TYPE      36       21         1         19
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 18(12P12.1) MUTATED            2          2        1         0
  DEL PEAK 18(12P12.1) WILD-TYPE          1          2        0         1
                                vv
clus                             STAGE IVB
  DEL PEAK 18(12P12.1) MUTATED           0
  DEL PEAK 18(12P12.1) WILD-TYPE         1
D43V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 18(12P12.1) MUTATED   10  5 10  1
  DEL PEAK 18(12P12.1) WILD-TYPE 38 23 24  5
D43V4, multiclass
    clus
vv   DEL PEAK 18(12P12.1) MUTATED DEL PEAK 18(12P12.1) WILD-TYPE
  T1                           10                             38
  T2                            5                             23
  T3                           10                             24
  T4                            1                              5
D43V5, binary
                                cls
clus                              0  1
  DEL PEAK 18(12P12.1) MUTATED   15  2
  DEL PEAK 18(12P12.1) WILD-TYPE 59  1
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(12P12.1) MUTATED     15    2
  DEL PEAK 18(12P12.1) WILD-TYPE   59    1
   clus
vv  DEL PEAK 18(12P12.1) MUTATED DEL PEAK 18(12P12.1) WILD-TYPE
  0                           15                             59
  1                            2                              1
                                vv
clus                             M0 M1 MX
  DEL PEAK 18(12P12.1) MUTATED   20  1  5
  DEL PEAK 18(12P12.1) WILD-TYPE 70  1 20
D43V6, multiclass
    clus
vv   DEL PEAK 18(12P12.1) MUTATED DEL PEAK 18(12P12.1) WILD-TYPE
  M0                           20                             70
  M1                            1                              1
  MX                            5                             20
D43V7, binary
                                cls
clus                              0  1
  DEL PEAK 18(12P12.1) MUTATED    9 17
  DEL PEAK 18(12P12.1) WILD-TYPE 35 56
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(12P12.1) MUTATED      9   17
  DEL PEAK 18(12P12.1) WILD-TYPE   35   56
        clus
vv       DEL PEAK 18(12P12.1) MUTATED DEL PEAK 18(12P12.1) WILD-TYPE
  FEMALE                            9                             35
  MALE                             17                             56
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 18(12P12.1) MUTATED   21  3  1  0
  DEL PEAK 18(12P12.1) WILD-TYPE 72  7  0  8
D43V8, multiclass
    clus
vv   DEL PEAK 18(12P12.1) MUTATED DEL PEAK 18(12P12.1) WILD-TYPE
  R0                           21                             72
  R1                            3                              7
  R2                            1                              0
  RX                            0                              8

Clustering(44) Variable = DEL PEAK 19(12Q24.33) MUTATION ANALYSIS
D44V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 19(12Q24.33) MUTATED    9 10
  DEL PEAK 19(12Q24.33) WILD-TYPE 52 43
  DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE 
                             19                              95 
  DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE 
                             10                              43 
$`DEL PEAK 19(12Q24.33) MUTATED`
TCGA-BC-A217 TCGA-BC-A5W4 TCGA-CC-5260 TCGA-CC-A1HT TCGA-CC-A3MA TCGA-CC-A3MC 
       13.81         9.50         2.86         3.32         0.07         0.13 
TCGA-DD-A1EH TCGA-DD-A1EL TCGA-DD-A39X TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A5 
       49.15        13.64        55.66        19.73        25.81       102.74 
TCGA-DD-A3A9 TCGA-DD-A4NO TCGA-ED-A459 TCGA-EP-A2KC TCGA-FV-A496 TCGA-G3-A25W 
       30.58        61.45         0.23         0.62         0.33        30.71 
TCGA-G3-A25Y 
       14.86 

$`DEL PEAK 19(12Q24.33) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T 
       48.99        27.91        37.32        10.13        46.78        27.52 
TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 
       27.52         2.99        25.32        23.34         1.12        69.57 
TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5261 
        5.03        44.42         0.26        16.37         0.07         3.02 
TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A3M9 TCGA-CC-A3MB TCGA-DD-A113 TCGA-DD-A114 
        3.39         4.24         0.10         0.10        79.73        37.74 
TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B 
       83.57        53.29       112.96         7.33         2.60         0.46 
TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC 
       21.76        51.25        90.67        79.36        66.31        19.76 
TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A39V 
       75.65         6.67        12.95         6.02        29.16        21.14 
TCGA-DD-A39Y TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A6 
        5.59         7.66        70.06        17.59        20.12       107.11 
TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A4NA TCGA-DD-A4ND TCGA-DD-A4NE TCGA-DD-A4NF 
       13.78         0.36        33.14        73.38        21.67        14.07 
TCGA-DD-A4NG TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NL 
       14.93        14.24        10.78        15.06        39.75        56.25 
TCGA-DD-A4NN TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-ED-A5KG TCGA-EP-A12J TCGA-EP-A26S 
       29.56        93.67        12.26         0.20        10.85         7.76 
TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT 
       11.74         1.97         3.19         0.43        23.01        14.40 
TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A495 
       32.45        19.07         0.20         6.35         0.13         0.03 
TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V 
       60.36         0.39         1.22        51.02        53.79        28.27 
TCGA-G3-A25X TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ 
       58.49        21.53        22.13        25.64         5.88        19.53 
TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SK TCGA-G3-A5SL TCGA-G3-A5SM 
       19.23        11.97         9.93         7.99         4.37 

  DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE 
                           0.07                            0.03 
  DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE 
                         102.74                          112.96 
  DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE 
                          13.81                           17.59 
[1] "0.1 - 102.7 (13.8)" "0.0 - 113.0 (17.6)"
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-CC-5261                      TCGA-CC-5262 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-DD-A113                      TCGA-DD-A114 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EH 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-DD-A1EI                      TCGA-DD-A1EJ 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
  "DEL PEAK 19(12Q24.33) MUTATED"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4ND                      TCGA-DD-A4NE 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NG 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NH                      TCGA-DD-A4NI 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NJ                      TCGA-DD-A4NK 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NL                      TCGA-DD-A4NN 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NO                      TCGA-DD-A4NP 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NQ                      TCGA-ED-A459 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-ED-A5KG                      TCGA-EP-A12J 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-FV-A3I0                      TCGA-FV-A3R2 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-FV-A3R3                      TCGA-FV-A495 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-FV-A496                      TCGA-FV-A4ZP 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-FV-A4ZQ                      TCGA-G3-A25S 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SK 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A5SL                      TCGA-G3-A5SM 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-CC-5261                      TCGA-CC-5262 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-DD-A113                      TCGA-DD-A114 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EH 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-DD-A1EI                      TCGA-DD-A1EJ 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
  "DEL PEAK 19(12Q24.33) MUTATED"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4ND                      TCGA-DD-A4NE 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NG 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NH                      TCGA-DD-A4NI 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NJ                      TCGA-DD-A4NK 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NL                      TCGA-DD-A4NN 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NO                      TCGA-DD-A4NP 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NQ                      TCGA-ED-A459 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-ED-A5KG                      TCGA-EP-A12J 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-FV-A3I0                      TCGA-FV-A3R2 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-FV-A3R3                      TCGA-FV-A495 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-FV-A496                      TCGA-FV-A4ZP 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-FV-A4ZQ                      TCGA-G3-A25S 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SK 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A5SL                      TCGA-G3-A5SM 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-CC-5261                      TCGA-CC-5262 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-DD-A113                      TCGA-DD-A114 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A115                      TCGA-DD-A116 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EH 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-DD-A1EI                      TCGA-DD-A1EJ 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
  "DEL PEAK 19(12Q24.33) MUTATED"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4ND                      TCGA-DD-A4NE 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NG 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NH                      TCGA-DD-A4NI 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NJ                      TCGA-DD-A4NK 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NL                      TCGA-DD-A4NN 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NO                      TCGA-DD-A4NP 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A4NQ                      TCGA-ED-A459 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-ED-A5KG                      TCGA-EP-A12J 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-FV-A3I0                      TCGA-FV-A3R2 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-FV-A3R3                      TCGA-FV-A495 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-FV-A496                      TCGA-FV-A4ZP 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-FV-A4ZQ                      TCGA-G3-A25S 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SK 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A5SL                      TCGA-G3-A5SM 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
[1] "hr=" "1.3"
D44V2, continuous
                                 vv
clus                              STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 19(12Q24.33) MUTATED         6        5         2          4
  DEL PEAK 19(12Q24.33) WILD-TYPE      39       20         0         21
                                 vv
clus                              STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 19(12Q24.33) MUTATED            1          1        0         0
  DEL PEAK 19(12Q24.33) WILD-TYPE          2          3        1         1
                                 vv
clus                              STAGE IVB
  DEL PEAK 19(12Q24.33) MUTATED           1
  DEL PEAK 19(12Q24.33) WILD-TYPE         0
D44V3, multiclass
                                 vv
clus                              T1 T2 T3 T4
  DEL PEAK 19(12Q24.33) MUTATED    6  5  7  2
  DEL PEAK 19(12Q24.33) WILD-TYPE 42 23 27  4
D44V4, multiclass
    clus
vv   DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE
  T1                             6                              42
  T2                             5                              23
  T3                             7                              27
  T4                             2                               4
D44V5, binary
                                 cls
clus                               0  1
  DEL PEAK 19(12Q24.33) MUTATED   13  0
  DEL PEAK 19(12Q24.33) WILD-TYPE 61  3
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 19(12Q24.33) MUTATED     13    0
  DEL PEAK 19(12Q24.33) WILD-TYPE   61    3
   clus
vv  DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE
  0                            13                              61
  1                             0                               3
                                 vv
clus                              M0 M1 MX
  DEL PEAK 19(12Q24.33) MUTATED   17  1  2
  DEL PEAK 19(12Q24.33) WILD-TYPE 73  1 23
D44V6, multiclass
    clus
vv   DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE
  M0                            17                              73
  M1                             1                               1
  MX                             2                              23
D44V7, binary
                                 cls
clus                               0  1
  DEL PEAK 19(12Q24.33) MUTATED   10 10
  DEL PEAK 19(12Q24.33) WILD-TYPE 34 63
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 19(12Q24.33) MUTATED     10   10
  DEL PEAK 19(12Q24.33) WILD-TYPE   34   63
        clus
vv       DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE
  FEMALE                            10                              34
  MALE                              10                              63
                                 vv
clus                              R0 R1 R2 RX
  DEL PEAK 19(12Q24.33) MUTATED   17  1  0  1
  DEL PEAK 19(12Q24.33) WILD-TYPE 76  9  1  7
D44V8, multiclass
    clus
vv   DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE
  R0                            17                              76
  R1                             1                               9
  R2                             0                               1
  RX                             1                               7

Clustering(45) Variable = DEL PEAK 20(13Q14.2) MUTATION ANALYSIS
D45V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 20(13Q14.2) MUTATED   25 27
  DEL PEAK 20(13Q14.2) WILD-TYPE 36 26
  DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE 
                            52                             62 
  DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE 
                            27                             26 
$`DEL PEAK 20(13Q14.2) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10W TCGA-BC-A10Y TCGA-BC-A10Z 
       37.32        10.13        27.52         2.99        23.34         1.12 
TCGA-BC-A112 TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-CC-5260 
        5.03        13.81         0.26        16.37         9.50         2.86 
TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-CC-A3MA 
        3.02         3.39         4.24         3.32         0.10         0.07 
TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 
        0.13        79.73        37.74        83.57        53.29       112.96 
TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A1EF TCGA-DD-A1EI TCGA-DD-A39X TCGA-DD-A39Y 
        2.60        21.76        12.95         6.02        55.66         5.59 
TCGA-DD-A3A0 TCGA-DD-A3A5 TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4NE TCGA-DD-A4NG 
       25.81       102.74        30.58        33.14        21.67        14.93 
TCGA-DD-A4NH TCGA-DD-A4NJ TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NQ TCGA-ED-A459 
       14.24        15.06        29.56        61.45        12.26         0.23 
TCGA-EP-A3RK TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A495 TCGA-G3-A25S TCGA-G3-A25T 
        0.43         0.20         6.35         0.03         1.22        51.02 
TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A3CH TCGA-G3-A5SM 
       58.49        14.86        25.64         4.37 

$`DEL PEAK 20(13Q14.2) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10X TCGA-BC-A110 
       48.99        27.91        46.78        27.52        25.32        69.57 
TCGA-BC-A216 TCGA-CC-5258 TCGA-CC-A3MB TCGA-DD-A119 TCGA-DD-A11B TCGA-DD-A11D 
       44.42         0.07         0.10         7.33         0.46        51.25 
TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE 
       90.67        79.36        66.31        19.76        75.65         6.67 
TCGA-DD-A1EH TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39Z TCGA-DD-A3A1 
       49.15        29.16        13.64        21.14        19.73         7.66 
TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 
       70.06        17.59        20.12       107.11        13.78         0.36 
TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NI TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NP 
       73.38        14.07        10.78        39.75        56.25        93.67 
TCGA-ED-A5KG TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC 
        0.20        10.85         7.76        11.74         1.97         0.62 
TCGA-EP-A3JL TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3R3 
        3.19        23.01        14.40        32.45        19.07         0.13 
TCGA-FV-A496 TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W 
        0.33        60.36         0.39        53.79        28.27        30.71 
TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SJ 
       21.53        22.13         5.88        19.53        19.23        11.97 
TCGA-G3-A5SK TCGA-G3-A5SL 
        9.93         7.99 

  DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE 
                          0.03                           0.07 
  DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE 
                        112.96                         107.11 
  DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE 
                        13.380                         19.745 
[1] "0.0 - 113.0 (13.4)" "0.1 - 107.1 (19.7)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "DEL PEAK 20(13Q14.2) MUTATED"   "DEL PEAK 20(13Q14.2) MUTATED" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
  "DEL PEAK 20(13Q14.2) MUTATED" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"DEL PEAK 20(13Q14.2) WILD-TYPE" "DEL PEAK 20(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"DEL PEAK 20(13Q14.2) WILD-TYPE"   "DEL PEAK 20(13Q14.2) MUTATED" 
[1] "hr=" "1.5"
D45V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 20(13Q14.2) MUTATED        14       14         1         13
  DEL PEAK 20(13Q14.2) WILD-TYPE      31       11         1         12
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 20(13Q14.2) MUTATED            1          3        0         0
  DEL PEAK 20(13Q14.2) WILD-TYPE          2          1        1         1
                                vv
clus                             STAGE IVB
  DEL PEAK 20(13Q14.2) MUTATED           1
  DEL PEAK 20(13Q14.2) WILD-TYPE         0
D45V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 20(13Q14.2) MUTATED   14 16 17  6
  DEL PEAK 20(13Q14.2) WILD-TYPE 34 12 17  0
D45V4, multiclass
    clus
vv   DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE
  T1                           14                             34
  T2                           16                             12
  T3                           17                             17
  T4                            6                              0
D45V5, binary
                                cls
clus                              0  1
  DEL PEAK 20(13Q14.2) MUTATED   34  1
  DEL PEAK 20(13Q14.2) WILD-TYPE 40  2
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(13Q14.2) MUTATED     34    1
  DEL PEAK 20(13Q14.2) WILD-TYPE   40    2
   clus
vv  DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE
  0                           34                             40
  1                            1                              2
                                vv
clus                             M0 M1 MX
  DEL PEAK 20(13Q14.2) MUTATED   43  1 10
  DEL PEAK 20(13Q14.2) WILD-TYPE 47  1 15
D45V6, multiclass
    clus
vv   DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE
  M0                           43                             47
  M1                            1                              1
  MX                           10                             15
D45V7, binary
                                cls
clus                              0  1
  DEL PEAK 20(13Q14.2) MUTATED   23 31
  DEL PEAK 20(13Q14.2) WILD-TYPE 21 42
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(13Q14.2) MUTATED     23   31
  DEL PEAK 20(13Q14.2) WILD-TYPE   21   42
        clus
vv       DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE
  FEMALE                           23                             21
  MALE                             31                             42
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 20(13Q14.2) MUTATED   41  5  0  5
  DEL PEAK 20(13Q14.2) WILD-TYPE 52  5  1  3
D45V8, multiclass
    clus
vv   DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE
  R0                           41                             52
  R1                            5                              5
  R2                            0                              1
  RX                            5                              3

Clustering(46) Variable = DEL PEAK 21(13Q22.2) MUTATION ANALYSIS
D46V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 21(13Q22.2) MUTATED   20 22
  DEL PEAK 21(13Q22.2) WILD-TYPE 41 31
  DEL PEAK 21(13Q22.2) MUTATED DEL PEAK 21(13Q22.2) WILD-TYPE 
                            42                             72 
  DEL PEAK 21(13Q22.2) MUTATED DEL PEAK 21(13Q22.2) WILD-TYPE 
                            22                             31 
$`DEL PEAK 21(13Q22.2) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10W TCGA-BC-A10Y TCGA-BC-A112 
       37.32        10.13        27.52         2.99        23.34         5.03 
TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-CC-5260 TCGA-CC-5262 
       13.81         0.26        16.37         9.50         2.86         3.39 
TCGA-CC-5263 TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-DD-A113 TCGA-DD-A115 TCGA-DD-A116 
        4.24         0.10         0.07        79.73        83.57        53.29 
TCGA-DD-A118 TCGA-DD-A11C TCGA-DD-A1EF TCGA-DD-A1EI TCGA-DD-A39X TCGA-DD-A3A0 
      112.96        21.76        12.95         6.02        55.66        25.81 
TCGA-DD-A3A5 TCGA-DD-A3A9 TCGA-DD-A4NE TCGA-DD-A4NG TCGA-DD-A4NH TCGA-DD-A4NJ 
      102.74        30.58        21.67        14.93        14.24        15.06 
TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NQ TCGA-EP-A3RK TCGA-FV-A3I0 TCGA-FV-A3R2 
       29.56        61.45        12.26         0.43         0.20         6.35 
TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A3CH TCGA-G3-A5SM 
        1.22        51.02        58.49        14.86        25.64         4.37 

$`DEL PEAK 21(13Q22.2) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10X TCGA-BC-A10Z 
       48.99        27.91        46.78        27.52        25.32         1.12 
TCGA-BC-A110 TCGA-BC-A216 TCGA-CC-5258 TCGA-CC-5261 TCGA-CC-A1HT TCGA-CC-A3MB 
       69.57        44.42         0.07         3.02         3.32         0.10 
TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11D 
        0.13        37.74         7.33         2.60         0.46        51.25 
TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE 
       90.67        79.36        66.31        19.76        75.65         6.67 
TCGA-DD-A1EH TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39V TCGA-DD-A39Y TCGA-DD-A39Z 
       49.15        29.16        13.64        21.14         5.59        19.73 
TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A6 TCGA-DD-A3A7 
        7.66        70.06        17.59        20.12       107.11        13.78 
TCGA-DD-A3A8 TCGA-DD-A4NA TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NI TCGA-DD-A4NK 
        0.36        33.14        73.38        14.07        10.78        39.75 
TCGA-DD-A4NL TCGA-DD-A4NP TCGA-ED-A459 TCGA-ED-A5KG TCGA-EP-A12J TCGA-EP-A26S 
       56.25        93.67         0.23         0.20        10.85         7.76 
TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL TCGA-ES-A2HS TCGA-ES-A2HT 
       11.74         1.97         0.62         3.19        23.01        14.40 
TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZP 
       32.45        19.07         0.13         0.03         0.33        60.36 
TCGA-FV-A4ZQ TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Z TCGA-G3-A3CG 
        0.39        53.79        28.27        30.71        21.53        22.13 
TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SK TCGA-G3-A5SL 
        5.88        19.53        19.23        11.97         9.93         7.99 

  DEL PEAK 21(13Q22.2) MUTATED DEL PEAK 21(13Q22.2) WILD-TYPE 
                          0.07                           0.03 
  DEL PEAK 21(13Q22.2) MUTATED DEL PEAK 21(13Q22.2) WILD-TYPE 
                        112.96                         107.11 
  DEL PEAK 21(13Q22.2) MUTATED DEL PEAK 21(13Q22.2) WILD-TYPE 
                        14.895                         19.150 
[1] "0.1 - 113.0 (14.9)" "0.0 - 107.1 (19.1)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "DEL PEAK 21(13Q22.2) MUTATED"   "DEL PEAK 21(13Q22.2) MUTATED" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
  "DEL PEAK 21(13Q22.2) MUTATED" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"DEL PEAK 21(13Q22.2) WILD-TYPE" "DEL PEAK 21(13Q22.2) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"DEL PEAK 21(13Q22.2) WILD-TYPE"   "DEL PEAK 21(13Q22.2) MUTATED" 
[1] "hr=" "1.2"
D46V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 21(13Q22.2) MUTATED        11        9         1         11
  DEL PEAK 21(13Q22.2) WILD-TYPE      34       16         1         14
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 21(13Q22.2) MUTATED            1          2        0         0
  DEL PEAK 21(13Q22.2) WILD-TYPE          2          2        1         1
                                vv
clus                             STAGE IVB
  DEL PEAK 21(13Q22.2) MUTATED           1
  DEL PEAK 21(13Q22.2) WILD-TYPE         0
D46V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 21(13Q22.2) MUTATED   11 10 15  6
  DEL PEAK 21(13Q22.2) WILD-TYPE 37 18 19  0
D46V4, multiclass
    clus
vv   DEL PEAK 21(13Q22.2) MUTATED DEL PEAK 21(13Q22.2) WILD-TYPE
  T1                           11                             37
  T2                           10                             18
  T3                           15                             19
  T4                            6                              0
D46V5, binary
                                cls
clus                              0  1
  DEL PEAK 21(13Q22.2) MUTATED   27  0
  DEL PEAK 21(13Q22.2) WILD-TYPE 47  3
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(13Q22.2) MUTATED     27    0
  DEL PEAK 21(13Q22.2) WILD-TYPE   47    3
   clus
vv  DEL PEAK 21(13Q22.2) MUTATED DEL PEAK 21(13Q22.2) WILD-TYPE
  0                           27                             47
  1                            0                              3
                                vv
clus                             M0 M1 MX
  DEL PEAK 21(13Q22.2) MUTATED   34  1  8
  DEL PEAK 21(13Q22.2) WILD-TYPE 56  1 17
D46V6, multiclass
    clus
vv   DEL PEAK 21(13Q22.2) MUTATED DEL PEAK 21(13Q22.2) WILD-TYPE
  M0                           34                             56
  M1                            1                              1
  MX                            8                             17
D46V7, binary
                                cls
clus                              0  1
  DEL PEAK 21(13Q22.2) MUTATED   19 24
  DEL PEAK 21(13Q22.2) WILD-TYPE 25 49
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(13Q22.2) MUTATED     19   24
  DEL PEAK 21(13Q22.2) WILD-TYPE   25   49
        clus
vv       DEL PEAK 21(13Q22.2) MUTATED DEL PEAK 21(13Q22.2) WILD-TYPE
  FEMALE                           19                             25
  MALE                             24                             49
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 21(13Q22.2) MUTATED   32  5  0  4
  DEL PEAK 21(13Q22.2) WILD-TYPE 61  5  1  4
D46V8, multiclass
    clus
vv   DEL PEAK 21(13Q22.2) MUTATED DEL PEAK 21(13Q22.2) WILD-TYPE
  R0                           32                             61
  R1                            5                              5
  R2                            0                              1
  RX                            4                              4

Clustering(47) Variable = DEL PEAK 22(14Q23.3) MUTATION ANALYSIS
D47V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 22(14Q23.3) MUTATED   24 16
  DEL PEAK 22(14Q23.3) WILD-TYPE 37 37
  DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE 
                            40                             74 
  DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE 
                            16                             37 
$`DEL PEAK 22(14Q23.3) MUTATED`
TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10Z TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A3KF 
       27.91        37.32         1.12         5.03        44.42         0.26 
TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-A1HT TCGA-CC-A3MA 
       16.37         0.07         2.86         3.02         3.32         0.07 
TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A115 TCGA-DD-A118 TCGA-DD-A11A 
        0.10         0.13        79.73        83.57       112.96         2.60 
TCGA-DD-A11C TCGA-DD-A1E9 TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39X 
       21.76        90.67         6.02        29.16        13.64        55.66 
TCGA-DD-A3A1 TCGA-DD-A3A7 TCGA-DD-A3A9 TCGA-DD-A4NH TCGA-DD-A4NO TCGA-DD-A4NQ 
        7.66        13.78        30.58        14.24        61.45        12.26 
TCGA-ED-A459 TCGA-EP-A12J TCGA-EP-A2KB TCGA-EP-A3RK TCGA-FV-A3I0 TCGA-FV-A4ZP 
        0.23        10.85         1.97         0.43         0.20        60.36 
TCGA-G3-A25S TCGA-G3-A25X TCGA-G3-A3CH TCGA-G3-A5SM 
        1.22        58.49        25.64         4.37 

$`DEL PEAK 22(14Q23.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10W 
       48.99        10.13        46.78        27.52        27.52         2.99 
TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A110 TCGA-BC-A217 TCGA-BC-A5W4 TCGA-CC-5262 
       25.32        23.34        69.57        13.81         9.50         3.39 
TCGA-CC-5263 TCGA-CC-A3M9 TCGA-DD-A114 TCGA-DD-A116 TCGA-DD-A119 TCGA-DD-A11B 
        4.24         0.10        37.74        53.29         7.33         0.46 
TCGA-DD-A11D TCGA-DD-A1EA TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE 
       51.25        79.36        66.31        19.76        75.65         6.67 
TCGA-DD-A1EF TCGA-DD-A1EH TCGA-DD-A39V TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A0 
       12.95        49.15        21.14         5.59        19.73        25.81 
TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A8 
       70.06        17.59        20.12       102.74       107.11         0.36 
TCGA-DD-A4NA TCGA-DD-A4ND TCGA-DD-A4NE TCGA-DD-A4NF TCGA-DD-A4NG TCGA-DD-A4NI 
       33.14        73.38        21.67        14.07        14.93        10.78 
TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NP TCGA-ED-A5KG 
       15.06        39.75        56.25        29.56        93.67         0.20 
TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KC TCGA-EP-A3JL TCGA-ES-A2HS TCGA-ES-A2HT 
        7.76        11.74         0.62         3.19        23.01        14.40 
TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A496 
       32.45        19.07         6.35         0.13         0.03         0.33 
TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Y 
        0.39        51.02        53.79        28.27        30.71        14.86 
TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SJ 
       21.53        22.13         5.88        19.53        19.23        11.97 
TCGA-G3-A5SK TCGA-G3-A5SL 
        9.93         7.99 

  DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE 
                          0.07                           0.03 
  DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE 
                        112.96                         107.11 
  DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE 
                        11.555                         19.630 
[1] "0.1 - 113.0 (11.6)" "0.0 - 107.1 (19.6)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
  "DEL PEAK 22(14Q23.3) MUTATED"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
  "DEL PEAK 22(14Q23.3) MUTATED" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"DEL PEAK 22(14Q23.3) WILD-TYPE" "DEL PEAK 22(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"DEL PEAK 22(14Q23.3) WILD-TYPE"   "DEL PEAK 22(14Q23.3) MUTATED" 
[1] "hr=" "1.1"
D47V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 22(14Q23.3) MUTATED        11       11         0         12
  DEL PEAK 22(14Q23.3) WILD-TYPE      34       14         2         13
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 22(14Q23.3) MUTATED            2          2        0         0
  DEL PEAK 22(14Q23.3) WILD-TYPE          1          2        1         1
                                vv
clus                             STAGE IVB
  DEL PEAK 22(14Q23.3) MUTATED           1
  DEL PEAK 22(14Q23.3) WILD-TYPE         0
D47V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 22(14Q23.3) MUTATED   12 12 15  2
  DEL PEAK 22(14Q23.3) WILD-TYPE 36 16 19  4
D47V4, multiclass
    clus
vv   DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE
  T1                           12                             36
  T2                           12                             16
  T3                           15                             19
  T4                            2                              4
D47V5, binary
                                cls
clus                              0  1
  DEL PEAK 22(14Q23.3) MUTATED   29  1
  DEL PEAK 22(14Q23.3) WILD-TYPE 45  2
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(14Q23.3) MUTATED     29    1
  DEL PEAK 22(14Q23.3) WILD-TYPE   45    2
   clus
vv  DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE
  0                           29                             45
  1                            1                              2
                                vv
clus                             M0 M1 MX
  DEL PEAK 22(14Q23.3) MUTATED   33  1  7
  DEL PEAK 22(14Q23.3) WILD-TYPE 57  1 18
D47V6, multiclass
    clus
vv   DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE
  M0                           33                             57
  M1                            1                              1
  MX                            7                             18
D47V7, binary
                                cls
clus                              0  1
  DEL PEAK 22(14Q23.3) MUTATED   14 27
  DEL PEAK 22(14Q23.3) WILD-TYPE 30 46
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(14Q23.3) MUTATED     14   27
  DEL PEAK 22(14Q23.3) WILD-TYPE   30   46
        clus
vv       DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE
  FEMALE                           14                             30
  MALE                             27                             46
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 22(14Q23.3) MUTATED   30  4  0  5
  DEL PEAK 22(14Q23.3) WILD-TYPE 63  6  1  3
D47V8, multiclass
    clus
vv   DEL PEAK 22(14Q23.3) MUTATED DEL PEAK 22(14Q23.3) WILD-TYPE
  R0                           30                             63
  R1                            4                              6
  R2                            0                              1
  RX                            5                              3

Clustering(48) Variable = DEL PEAK 23(16Q23.1) MUTATION ANALYSIS
D48V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 23(16Q23.1) MUTATED   24 24
  DEL PEAK 23(16Q23.1) WILD-TYPE 37 29
  DEL PEAK 23(16Q23.1) MUTATED DEL PEAK 23(16Q23.1) WILD-TYPE 
                            48                             66 
  DEL PEAK 23(16Q23.1) MUTATED DEL PEAK 23(16Q23.1) WILD-TYPE 
                            24                             29 
$`DEL PEAK 23(16Q23.1) MUTATED`
TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z 
       10.13        46.78         2.99        25.32        23.34         1.12 
TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KG TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5261 
       44.42        13.81        16.37         0.07         2.86         3.02 
TCGA-CC-5263 TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A113 
        4.24         0.10         0.07         0.10         0.13        79.73 
TCGA-DD-A114 TCGA-DD-A116 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A1EF TCGA-DD-A1EH 
       37.74        53.29         2.60         0.46        12.95        49.15 
TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A39Z TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4ND 
        6.02        29.16        19.73         0.36        30.58        73.38 
TCGA-DD-A4NE TCGA-DD-A4NH TCGA-DD-A4NJ TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NQ 
       21.67        14.24        15.06        29.56        61.45        12.26 
TCGA-ED-A459 TCGA-EP-A2KB TCGA-ES-A2HS TCGA-FV-A23B TCGA-FV-A3I0 TCGA-FV-A3R2 
        0.23         1.97        23.01        32.45         0.20         6.35 
TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CH 
        1.22        53.79        58.49        14.86        21.53        25.64 

$`DEL PEAK 23(16Q23.1) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A110 
       48.99        27.91        37.32        27.52        27.52        69.57 
TCGA-BC-A112 TCGA-BC-A3KF TCGA-BC-A5W4 TCGA-CC-5262 TCGA-CC-A1HT TCGA-DD-A115 
        5.03         0.26         9.50         3.39         3.32        83.57 
TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA 
      112.96         7.33        21.76        51.25        90.67        79.36 
TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EL TCGA-DD-A39V 
       66.31        19.76        75.65         6.67        13.64        21.14 
TCGA-DD-A39X TCGA-DD-A39Y TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 
       55.66         5.59        25.81         7.66        70.06        17.59 
TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A4NA TCGA-DD-A4NF 
       20.12       102.74       107.11        13.78        33.14        14.07 
TCGA-DD-A4NG TCGA-DD-A4NI TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NP TCGA-ED-A5KG 
       14.93        10.78        39.75        56.25        93.67         0.20 
TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK 
       10.85         7.76        11.74         0.62         3.19         0.43 
TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZP 
       14.40        19.07         0.13         0.03         0.33        60.36 
TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A3CG TCGA-G3-A3CI 
        0.39        51.02        28.27        30.71        22.13         5.88 
TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SK TCGA-G3-A5SL TCGA-G3-A5SM 
       19.53        19.23        11.97         9.93         7.99         4.37 

  DEL PEAK 23(16Q23.1) MUTATED DEL PEAK 23(16Q23.1) WILD-TYPE 
                          0.07                           0.03 
  DEL PEAK 23(16Q23.1) MUTATED DEL PEAK 23(16Q23.1) WILD-TYPE 
                         79.73                         112.96 
  DEL PEAK 23(16Q23.1) MUTATED DEL PEAK 23(16Q23.1) WILD-TYPE 
                         14.55                          19.15 
[1] "0.1 - 79.7 (14.6)"  "0.0 - 113.0 (19.1)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 23(16Q23.1) WILD-TYPE"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 23(16Q23.1) WILD-TYPE"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 23(16Q23.1) WILD-TYPE"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 23(16Q23.1) WILD-TYPE"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 23(16Q23.1) WILD-TYPE"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 23(16Q23.1) WILD-TYPE"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK 23(16Q23.1) WILD-TYPE"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 23(16Q23.1) WILD-TYPE"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 23(16Q23.1) WILD-TYPE"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 23(16Q23.1) WILD-TYPE"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 23(16Q23.1) WILD-TYPE"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 23(16Q23.1) WILD-TYPE"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 23(16Q23.1) WILD-TYPE"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 23(16Q23.1) WILD-TYPE"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK 23(16Q23.1) WILD-TYPE"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 23(16Q23.1) WILD-TYPE"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 23(16Q23.1) WILD-TYPE"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 23(16Q23.1) WILD-TYPE"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 23(16Q23.1) WILD-TYPE"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 23(16Q23.1) WILD-TYPE"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 23(16Q23.1) WILD-TYPE"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 23(16Q23.1) WILD-TYPE"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK 23(16Q23.1) WILD-TYPE"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 23(16Q23.1) WILD-TYPE"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "DEL PEAK 23(16Q23.1) MUTATED"   "DEL PEAK 23(16Q23.1) MUTATED" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
  "DEL PEAK 23(16Q23.1) MUTATED" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"DEL PEAK 23(16Q23.1) WILD-TYPE" "DEL PEAK 23(16Q23.1) WILD-TYPE" 
[1] "hr=" "1.7"
D48V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 23(16Q23.1) MUTATED        15       14         1         11
  DEL PEAK 23(16Q23.1) WILD-TYPE      30       11         1         14
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 23(16Q23.1) MUTATED            1          2        0         1
  DEL PEAK 23(16Q23.1) WILD-TYPE          2          2        1         0
                                vv
clus                             STAGE IVB
  DEL PEAK 23(16Q23.1) MUTATED           1
  DEL PEAK 23(16Q23.1) WILD-TYPE         0
D48V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 23(16Q23.1) MUTATED   17 14 15  4
  DEL PEAK 23(16Q23.1) WILD-TYPE 31 14 19  2
D48V4, multiclass
    clus
vv   DEL PEAK 23(16Q23.1) MUTATED DEL PEAK 23(16Q23.1) WILD-TYPE
  T1                           17                             31
  T2                           14                             14
  T3                           15                             19
  T4                            4                              2
D48V5, binary
                                cls
clus                              0  1
  DEL PEAK 23(16Q23.1) MUTATED   36  2
  DEL PEAK 23(16Q23.1) WILD-TYPE 38  1
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(16Q23.1) MUTATED     36    2
  DEL PEAK 23(16Q23.1) WILD-TYPE   38    1
   clus
vv  DEL PEAK 23(16Q23.1) MUTATED DEL PEAK 23(16Q23.1) WILD-TYPE
  0                           36                             38
  1                            2                              1
                                vv
clus                             M0 M1 MX
  DEL PEAK 23(16Q23.1) MUTATED   39  1 10
  DEL PEAK 23(16Q23.1) WILD-TYPE 51  1 15
D48V6, multiclass
    clus
vv   DEL PEAK 23(16Q23.1) MUTATED DEL PEAK 23(16Q23.1) WILD-TYPE
  M0                           39                             51
  M1                            1                              1
  MX                           10                             15
D48V7, binary
                                cls
clus                              0  1
  DEL PEAK 23(16Q23.1) MUTATED   22 28
  DEL PEAK 23(16Q23.1) WILD-TYPE 22 45
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(16Q23.1) MUTATED     22   28
  DEL PEAK 23(16Q23.1) WILD-TYPE   22   45
        clus
vv       DEL PEAK 23(16Q23.1) MUTATED DEL PEAK 23(16Q23.1) WILD-TYPE
  FEMALE                           22                             22
  MALE                             28                             45
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 23(16Q23.1) MUTATED   42  2  0  6
  DEL PEAK 23(16Q23.1) WILD-TYPE 51  8  1  2
D48V8, multiclass
    clus
vv   DEL PEAK 23(16Q23.1) MUTATED DEL PEAK 23(16Q23.1) WILD-TYPE
  R0                           42                             51
  R1                            2                              8
  R2                            0                              1
  RX                            6                              2

Clustering(49) Variable = DEL PEAK 24(17P13.3) MUTATION ANALYSIS
D49V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 24(17P13.3) MUTATED   31 30
  DEL PEAK 24(17P13.3) WILD-TYPE 30 23
  DEL PEAK 24(17P13.3) MUTATED DEL PEAK 24(17P13.3) WILD-TYPE 
                            61                             53 
  DEL PEAK 24(17P13.3) MUTATED DEL PEAK 24(17P13.3) WILD-TYPE 
                            30                             23 
$`DEL PEAK 24(17P13.3) MUTATED`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10U TCGA-BC-A10Y TCGA-BC-A10Z 
       48.99        27.91        10.13        27.52        23.34         1.12 
TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-BC-A5W4 
       69.57         5.03        13.81         0.26        16.37         9.50 
TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A1HT 
        0.07         2.86         3.02         3.39         4.24         3.32 
TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 
        0.07         0.10         0.13        37.74        83.57        53.29 
TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1EA 
      112.96         7.33         2.60        21.76        51.25        79.36 
TCGA-DD-A1EB TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39Y 
       66.31        49.15         6.02        29.16        13.64         5.59 
TCGA-DD-A3A0 TCGA-DD-A3A3 TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A7 TCGA-DD-A4NH 
       25.81        17.59        20.12       102.74        13.78        14.24 
TCGA-DD-A4NJ TCGA-DD-A4NQ TCGA-ED-A459 TCGA-EP-A2KC TCGA-FV-A23B TCGA-FV-A2QR 
       15.06        12.26         0.23         0.62        32.45        19.07 
TCGA-FV-A3I0 TCGA-FV-A495 TCGA-FV-A496 TCGA-G3-A25S TCGA-G3-A25U TCGA-G3-A25V 
        0.20         0.03         0.33         1.22        53.79        28.27 
TCGA-G3-A25W TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CH TCGA-G3-A5SJ TCGA-G3-A5SK 
       30.71        14.86        21.53        25.64        11.97         9.93 
TCGA-G3-A5SM 
        4.37 

$`DEL PEAK 24(17P13.3) WILD-TYPE`
TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A216 
       37.32        46.78        27.52         2.99        25.32        44.42 
TCGA-CC-A3M9 TCGA-DD-A113 TCGA-DD-A11B TCGA-DD-A1E9 TCGA-DD-A1EC TCGA-DD-A1ED 
        0.10        79.73         0.46        90.67        19.76        75.65 
TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A39V TCGA-DD-A39X TCGA-DD-A39Z TCGA-DD-A3A1 
        6.67        12.95        21.14        55.66        19.73         7.66 
TCGA-DD-A3A2 TCGA-DD-A3A6 TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4NA TCGA-DD-A4ND 
       70.06       107.11         0.36        30.58        33.14        73.38 
TCGA-DD-A4NE TCGA-DD-A4NF TCGA-DD-A4NG TCGA-DD-A4NI TCGA-DD-A4NK TCGA-DD-A4NL 
       21.67        14.07        14.93        10.78        39.75        56.25 
TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NP TCGA-ED-A5KG TCGA-EP-A12J TCGA-EP-A26S 
       29.56        61.45        93.67         0.20        10.85         7.76 
TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT 
       11.74         1.97         3.19         0.43        23.01        14.40 
TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25X 
        6.35         0.13        60.36         0.39        51.02        58.49 
TCGA-G3-A3CG TCGA-G3-A3CI TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SL 
       22.13         5.88        19.53        19.23         7.99 

  DEL PEAK 24(17P13.3) MUTATED DEL PEAK 24(17P13.3) WILD-TYPE 
                          0.03                           0.10 
  DEL PEAK 24(17P13.3) MUTATED DEL PEAK 24(17P13.3) WILD-TYPE 
                        112.96                         107.11 
  DEL PEAK 24(17P13.3) MUTATED DEL PEAK 24(17P13.3) WILD-TYPE 
                         13.81                          19.76 
[1] "0.0 - 113.0 (13.8)" "0.1 - 107.1 (19.8)"
                    TCGA-BC-4072                     TCGA-BC-4073 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
  "DEL PEAK 24(17P13.3) MUTATED" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 24(17P13.3) WILD-TYPE" "DEL PEAK 24(17P13.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
  "DEL PEAK 24(17P13.3) MUTATED"   "DEL PEAK 24(17P13.3) MUTATED" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"DEL PEAK 24(17P13.3) WILD-TYPE"   "DEL PEAK 24(17P13.3) MUTATED" 
[1] "hr=" "1.5"
D49V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 24(17P13.3) MUTATED        20       16         2         13
  DEL PEAK 24(17P13.3) WILD-TYPE      25        9         0         12
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 24(17P13.3) MUTATED            3          3        1         1
  DEL PEAK 24(17P13.3) WILD-TYPE          0          1        0         0
                                vv
clus                             STAGE IVB
  DEL PEAK 24(17P13.3) MUTATED           0
  DEL PEAK 24(17P13.3) WILD-TYPE         1
D49V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 24(17P13.3) MUTATED   23 17 21  3
  DEL PEAK 24(17P13.3) WILD-TYPE 25 11 13  3
D49V4, multiclass
    clus
vv   DEL PEAK 24(17P13.3) MUTATED DEL PEAK 24(17P13.3) WILD-TYPE
  T1                           23                             25
  T2                           17                             11
  T3                           21                             13
  T4                            3                              3
D49V5, binary
                                cls
clus                              0  1
  DEL PEAK 24(17P13.3) MUTATED   44  2
  DEL PEAK 24(17P13.3) WILD-TYPE 30  1
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(17P13.3) MUTATED     44    2
  DEL PEAK 24(17P13.3) WILD-TYPE   30    1
   clus
vv  DEL PEAK 24(17P13.3) MUTATED DEL PEAK 24(17P13.3) WILD-TYPE
  0                           44                             30
  1                            2                              1
                                vv
clus                             M0 M1 MX
  DEL PEAK 24(17P13.3) MUTATED   53  1 10
  DEL PEAK 24(17P13.3) WILD-TYPE 37  1 15
D49V6, multiclass
    clus
vv   DEL PEAK 24(17P13.3) MUTATED DEL PEAK 24(17P13.3) WILD-TYPE
  M0                           53                             37
  M1                            1                              1
  MX                           10                             15
D49V7, binary
                                cls
clus                              0  1
  DEL PEAK 24(17P13.3) MUTATED   23 41
  DEL PEAK 24(17P13.3) WILD-TYPE 21 32
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(17P13.3) MUTATED     23   41
  DEL PEAK 24(17P13.3) WILD-TYPE   21   32
        clus
vv       DEL PEAK 24(17P13.3) MUTATED DEL PEAK 24(17P13.3) WILD-TYPE
  FEMALE                           23                             21
  MALE                             41                             32
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 24(17P13.3) MUTATED   49  5  1  7
  DEL PEAK 24(17P13.3) WILD-TYPE 44  5  0  1
D49V8, multiclass
    clus
vv   DEL PEAK 24(17P13.3) MUTATED DEL PEAK 24(17P13.3) WILD-TYPE
  R0                           49                             44
  R1                            5                              5
  R2                            1                              0
  RX                            7                              1

Clustering(50) Variable = DEL PEAK 25(17P11.2) MUTATION ANALYSIS
D50V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 25(17P11.2) MUTATED   31 31
  DEL PEAK 25(17P11.2) WILD-TYPE 30 22
  DEL PEAK 25(17P11.2) MUTATED DEL PEAK 25(17P11.2) WILD-TYPE 
                            62                             52 
  DEL PEAK 25(17P11.2) MUTATED DEL PEAK 25(17P11.2) WILD-TYPE 
                            31                             22 
$`DEL PEAK 25(17P11.2) MUTATED`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10T TCGA-BC-A10U TCGA-BC-A10Y 
       48.99        27.91        10.13        27.52        27.52        23.34 
TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG 
        1.12        69.57         5.03        13.81         0.26        16.37 
TCGA-BC-A5W4 TCGA-CC-5258 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A1HT 
        9.50         0.07         3.02         3.39         4.24         3.32 
TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 
        0.07         0.10         0.13        37.74        83.57        53.29 
TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1EA TCGA-DD-A1EB 
      112.96         7.33        21.76        51.25        79.36        66.31 
TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39Y TCGA-DD-A3A3 TCGA-DD-A3A4 
        6.02        29.16        13.64         5.59        17.59        20.12 
TCGA-DD-A3A5 TCGA-DD-A3A7 TCGA-DD-A4NA TCGA-DD-A4NH TCGA-DD-A4NJ TCGA-DD-A4NO 
      102.74        13.78        33.14        14.24        15.06        61.45 
TCGA-DD-A4NQ TCGA-ED-A459 TCGA-EP-A2KC TCGA-ES-A2HS TCGA-FV-A23B TCGA-FV-A2QR 
       12.26         0.23         0.62        23.01        32.45        19.07 
TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A495 TCGA-FV-A4ZP TCGA-G3-A25S TCGA-G3-A25U 
        0.20         6.35         0.03        60.36         1.22        53.79 
TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH 
       28.27        30.71        14.86        21.53        22.13        25.64 
TCGA-G3-A5SL TCGA-G3-A5SM 
        7.99         4.37 

$`DEL PEAK 25(17P11.2) WILD-TYPE`
TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A216 TCGA-CC-5260 
       37.32        46.78         2.99        25.32        44.42         2.86 
TCGA-CC-A3M9 TCGA-DD-A113 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A1E9 TCGA-DD-A1EC 
        0.10        79.73         2.60         0.46        90.67        19.76 
TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EH TCGA-DD-A39V TCGA-DD-A39X 
       75.65         6.67        12.95        49.15        21.14        55.66 
TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A6 TCGA-DD-A3A8 
       19.73        25.81         7.66        70.06       107.11         0.36 
TCGA-DD-A3A9 TCGA-DD-A4ND TCGA-DD-A4NE TCGA-DD-A4NF TCGA-DD-A4NG TCGA-DD-A4NI 
       30.58        73.38        21.67        14.07        14.93        10.78 
TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NP TCGA-ED-A5KG TCGA-EP-A12J 
       39.75        56.25        29.56        93.67         0.20        10.85 
TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HT 
        7.76        11.74         1.97         3.19         0.43        14.40 
TCGA-FV-A3R3 TCGA-FV-A496 TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25X TCGA-G3-A3CI 
        0.13         0.33         0.39        51.02        58.49         5.88 
TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SK 
       19.53        19.23        11.97         9.93 

  DEL PEAK 25(17P11.2) MUTATED DEL PEAK 25(17P11.2) WILD-TYPE 
                          0.03                           0.10 
  DEL PEAK 25(17P11.2) MUTATED DEL PEAK 25(17P11.2) WILD-TYPE 
                        112.96                         107.11 
  DEL PEAK 25(17P11.2) MUTATED DEL PEAK 25(17P11.2) WILD-TYPE 
                        15.715                         17.080 
[1] "0.0 - 113.0 (15.7)" "0.1 - 107.1 (17.1)"
                    TCGA-BC-4072                     TCGA-BC-4073 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 25(17P11.2) WILD-TYPE"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
  "DEL PEAK 25(17P11.2) MUTATED" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"DEL PEAK 25(17P11.2) WILD-TYPE" "DEL PEAK 25(17P11.2) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
  "DEL PEAK 25(17P11.2) MUTATED"   "DEL PEAK 25(17P11.2) MUTATED" 
[1] "hr=" "1.3"
D50V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 25(17P11.2) MUTATED        19       16         1         14
  DEL PEAK 25(17P11.2) WILD-TYPE      26        9         1         11
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 25(17P11.2) MUTATED            3          3        1         1
  DEL PEAK 25(17P11.2) WILD-TYPE          0          1        0         0
                                vv
clus                             STAGE IVB
  DEL PEAK 25(17P11.2) MUTATED           0
  DEL PEAK 25(17P11.2) WILD-TYPE         1
D50V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 25(17P11.2) MUTATED   22 18 21  3
  DEL PEAK 25(17P11.2) WILD-TYPE 26 10 13  3
D50V4, multiclass
    clus
vv   DEL PEAK 25(17P11.2) MUTATED DEL PEAK 25(17P11.2) WILD-TYPE
  T1                           22                             26
  T2                           18                             10
  T3                           21                             13
  T4                            3                              3
D50V5, binary
                                cls
clus                              0  1
  DEL PEAK 25(17P11.2) MUTATED   42  3
  DEL PEAK 25(17P11.2) WILD-TYPE 32  0
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(17P11.2) MUTATED     42    3
  DEL PEAK 25(17P11.2) WILD-TYPE   32    0
   clus
vv  DEL PEAK 25(17P11.2) MUTATED DEL PEAK 25(17P11.2) WILD-TYPE
  0                           42                             32
  1                            3                              0
                                vv
clus                             M0 M1 MX
  DEL PEAK 25(17P11.2) MUTATED   50  1 13
  DEL PEAK 25(17P11.2) WILD-TYPE 40  1 12
D50V6, multiclass
    clus
vv   DEL PEAK 25(17P11.2) MUTATED DEL PEAK 25(17P11.2) WILD-TYPE
  M0                           50                             40
  M1                            1                              1
  MX                           13                             12
D50V7, binary
                                cls
clus                              0  1
  DEL PEAK 25(17P11.2) MUTATED   22 42
  DEL PEAK 25(17P11.2) WILD-TYPE 22 31
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(17P11.2) MUTATED     22   42
  DEL PEAK 25(17P11.2) WILD-TYPE   22   31
        clus
vv       DEL PEAK 25(17P11.2) MUTATED DEL PEAK 25(17P11.2) WILD-TYPE
  FEMALE                           22                             22
  MALE                             42                             31
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 25(17P11.2) MUTATED   48  8  1  5
  DEL PEAK 25(17P11.2) WILD-TYPE 45  2  0  3
D50V8, multiclass
    clus
vv   DEL PEAK 25(17P11.2) MUTATED DEL PEAK 25(17P11.2) WILD-TYPE
  R0                           48                             45
  R1                            8                              2
  R2                            1                              0
  RX                            5                              3

Clustering(51) Variable = DEL PEAK 26(18Q21.2) MUTATION ANALYSIS
D51V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 26(18Q21.2) MUTATED   10 14
  DEL PEAK 26(18Q21.2) WILD-TYPE 51 39
  DEL PEAK 26(18Q21.2) MUTATED DEL PEAK 26(18Q21.2) WILD-TYPE 
                            24                             90 
  DEL PEAK 26(18Q21.2) MUTATED DEL PEAK 26(18Q21.2) WILD-TYPE 
                            14                             39 
$`DEL PEAK 26(18Q21.2) MUTATED`
TCGA-BC-A10R TCGA-BC-A10U TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KF 
       10.13        27.52         5.03        44.42        13.81         0.26 
TCGA-CC-A3MB TCGA-DD-A118 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A1EJ TCGA-DD-A1EL 
        0.10       112.96         2.60         0.46        29.16        13.64 
TCGA-DD-A39X TCGA-DD-A3A4 TCGA-DD-A3A9 TCGA-DD-A4NE TCGA-DD-A4NN TCGA-DD-A4NO 
       55.66        20.12        30.58        21.67        29.56        61.45 
TCGA-ED-A459 TCGA-ES-A2HS TCGA-FV-A3I0 TCGA-FV-A3R2 TCGA-FV-A496 TCGA-G3-A25S 
        0.23        23.01         0.20         6.35         0.33         1.22 

$`DEL PEAK 26(18Q21.2) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10S TCGA-BC-A10T TCGA-BC-A10W 
       48.99        27.91        37.32        46.78        27.52         2.99 
TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A3KG TCGA-BC-A5W4 
       25.32        23.34         1.12        69.57        16.37         9.50 
TCGA-CC-5258 TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A1HT 
        0.07         2.86         3.02         3.39         4.24         3.32 
TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A115 
        0.10         0.07         0.13        79.73        37.74        83.57 
TCGA-DD-A116 TCGA-DD-A119 TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA 
       53.29         7.33        21.76        51.25        90.67        79.36 
TCGA-DD-A1EB TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EH 
       66.31        19.76        75.65         6.67        12.95        49.15 
TCGA-DD-A1EI TCGA-DD-A39V TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 
        6.02        21.14         5.59        19.73        25.81         7.66 
TCGA-DD-A3A2 TCGA-DD-A3A3 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 
       70.06        17.59       102.74       107.11        13.78         0.36 
TCGA-DD-A4NA TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NG TCGA-DD-A4NH TCGA-DD-A4NI 
       33.14        73.38        14.07        14.93        14.24        10.78 
TCGA-DD-A4NJ TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NP TCGA-DD-A4NQ TCGA-ED-A5KG 
       15.06        39.75        56.25        93.67        12.26         0.20 
TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL 
       10.85         7.76        11.74         1.97         0.62         3.19 
TCGA-EP-A3RK TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3R3 TCGA-FV-A495 
        0.43        14.40        32.45        19.07         0.13         0.03 
TCGA-FV-A4ZP TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W 
       60.36         0.39        51.02        53.79        28.27        30.71 
TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI 
       58.49        14.86        21.53        22.13        25.64         5.88 
TCGA-G3-A3CJ TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SK TCGA-G3-A5SL TCGA-G3-A5SM 
       19.53        19.23        11.97         9.93         7.99         4.37 

  DEL PEAK 26(18Q21.2) MUTATED DEL PEAK 26(18Q21.2) WILD-TYPE 
                          0.10                           0.03 
  DEL PEAK 26(18Q21.2) MUTATED DEL PEAK 26(18Q21.2) WILD-TYPE 
                        112.96                         107.11 
  DEL PEAK 26(18Q21.2) MUTATED DEL PEAK 26(18Q21.2) WILD-TYPE 
                        13.725                         16.980 
[1] "0.1 - 113.0 (13.7)" "0.0 - 107.1 (17.0)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 26(18Q21.2) WILD-TYPE"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "DEL PEAK 26(18Q21.2) MUTATED" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 26(18Q21.2) MUTATED"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 26(18Q21.2) MUTATED"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "DEL PEAK 26(18Q21.2) MUTATED" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 26(18Q21.2) MUTATED" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 26(18Q21.2) MUTATED"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"DEL PEAK 26(18Q21.2) WILD-TYPE"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 26(18Q21.2) MUTATED" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 26(18Q21.2) MUTATED" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 26(18Q21.2) WILD-TYPE"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 26(18Q21.2) MUTATED" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"DEL PEAK 26(18Q21.2) WILD-TYPE"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 26(18Q21.2) WILD-TYPE"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "DEL PEAK 26(18Q21.2) MUTATED" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"DEL PEAK 26(18Q21.2) WILD-TYPE"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "DEL PEAK 26(18Q21.2) MUTATED" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "DEL PEAK 26(18Q21.2) MUTATED"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
  "DEL PEAK 26(18Q21.2) MUTATED" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK 26(18Q21.2) WILD-TYPE"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 26(18Q21.2) WILD-TYPE"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "DEL PEAK 26(18Q21.2) MUTATED" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 26(18Q21.2) MUTATED"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 26(18Q21.2) MUTATED"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "DEL PEAK 26(18Q21.2) MUTATED" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 26(18Q21.2) MUTATED" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 26(18Q21.2) MUTATED"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"DEL PEAK 26(18Q21.2) WILD-TYPE"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 26(18Q21.2) MUTATED" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 26(18Q21.2) MUTATED" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 26(18Q21.2) WILD-TYPE"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 26(18Q21.2) MUTATED" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"DEL PEAK 26(18Q21.2) WILD-TYPE"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 26(18Q21.2) WILD-TYPE"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "DEL PEAK 26(18Q21.2) MUTATED" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"DEL PEAK 26(18Q21.2) WILD-TYPE"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "DEL PEAK 26(18Q21.2) MUTATED" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "DEL PEAK 26(18Q21.2) MUTATED"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
  "DEL PEAK 26(18Q21.2) MUTATED" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK 26(18Q21.2) WILD-TYPE"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 26(18Q21.2) WILD-TYPE"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "DEL PEAK 26(18Q21.2) MUTATED" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 26(18Q21.2) MUTATED"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 26(18Q21.2) MUTATED"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
  "DEL PEAK 26(18Q21.2) MUTATED" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A113                     TCGA-DD-A114 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 26(18Q21.2) MUTATED" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 26(18Q21.2) MUTATED"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
"DEL PEAK 26(18Q21.2) WILD-TYPE"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 26(18Q21.2) MUTATED" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 26(18Q21.2) MUTATED" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 26(18Q21.2) WILD-TYPE"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 26(18Q21.2) MUTATED" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"DEL PEAK 26(18Q21.2) WILD-TYPE"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 26(18Q21.2) WILD-TYPE"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
  "DEL PEAK 26(18Q21.2) MUTATED" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
"DEL PEAK 26(18Q21.2) WILD-TYPE"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
  "DEL PEAK 26(18Q21.2) MUTATED" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
  "DEL PEAK 26(18Q21.2) MUTATED"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
  "DEL PEAK 26(18Q21.2) MUTATED" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK 26(18Q21.2) WILD-TYPE"   "DEL PEAK 26(18Q21.2) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"DEL PEAK 26(18Q21.2) WILD-TYPE" "DEL PEAK 26(18Q21.2) WILD-TYPE" 
[1] "hr=" "1.6"
D51V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 26(18Q21.2) MUTATED        10        5         0          4
  DEL PEAK 26(18Q21.2) WILD-TYPE      35       20         2         21
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 26(18Q21.2) MUTATED            0          1        0         0
  DEL PEAK 26(18Q21.2) WILD-TYPE          3          3        1         1
                                vv
clus                             STAGE IVB
  DEL PEAK 26(18Q21.2) MUTATED           1
  DEL PEAK 26(18Q21.2) WILD-TYPE         0
D51V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 26(18Q21.2) MUTATED   11  6  6  1
  DEL PEAK 26(18Q21.2) WILD-TYPE 37 22 28  5
D51V4, multiclass
    clus
vv   DEL PEAK 26(18Q21.2) MUTATED DEL PEAK 26(18Q21.2) WILD-TYPE
  T1                           11                             37
  T2                            6                             22
  T3                            6                             28
  T4                            1                              5
D51V5, binary
                                cls
clus                              0  1
  DEL PEAK 26(18Q21.2) MUTATED   12  1
  DEL PEAK 26(18Q21.2) WILD-TYPE 62  2
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(18Q21.2) MUTATED     12    1
  DEL PEAK 26(18Q21.2) WILD-TYPE   62    2
   clus
vv  DEL PEAK 26(18Q21.2) MUTATED DEL PEAK 26(18Q21.2) WILD-TYPE
  0                           12                             62
  1                            1                              2
                                vv
clus                             M0 M1 MX
  DEL PEAK 26(18Q21.2) MUTATED   18  1  5
  DEL PEAK 26(18Q21.2) WILD-TYPE 72  1 20
D51V6, multiclass
    clus
vv   DEL PEAK 26(18Q21.2) MUTATED DEL PEAK 26(18Q21.2) WILD-TYPE
  M0                           18                             72
  M1                            1                              1
  MX                            5                             20
D51V7, binary
                                cls
clus                              0  1
  DEL PEAK 26(18Q21.2) MUTATED   12 12
  DEL PEAK 26(18Q21.2) WILD-TYPE 32 61
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(18Q21.2) MUTATED     12   12
  DEL PEAK 26(18Q21.2) WILD-TYPE   32   61
        clus
vv       DEL PEAK 26(18Q21.2) MUTATED DEL PEAK 26(18Q21.2) WILD-TYPE
  FEMALE                           12                             32
  MALE                             12                             61
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 26(18Q21.2) MUTATED   21  2  0  1
  DEL PEAK 26(18Q21.2) WILD-TYPE 72  8  1  7
D51V8, multiclass
    clus
vv   DEL PEAK 26(18Q21.2) MUTATED DEL PEAK 26(18Q21.2) WILD-TYPE
  R0                           21                             72
  R1                            2                              8
  R2                            0                              1
  RX                            1                              7

Clustering(52) Variable = DEL PEAK 27(19P13.3) MUTATION ANALYSIS
D52V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 27(19P13.3) MUTATED   14 12
  DEL PEAK 27(19P13.3) WILD-TYPE 47 41
  DEL PEAK 27(19P13.3) MUTATED DEL PEAK 27(19P13.3) WILD-TYPE 
                            26                             88 
  DEL PEAK 27(19P13.3) MUTATED DEL PEAK 27(19P13.3) WILD-TYPE 
                            12                             41 
$`DEL PEAK 27(19P13.3) MUTATED`
TCGA-BC-A10W TCGA-BC-A112 TCGA-BC-A3KF TCGA-CC-5258 TCGA-CC-5263 TCGA-CC-A1HT 
        2.99         5.03         0.26         0.07         4.24         3.32 
TCGA-CC-A3MC TCGA-DD-A113 TCGA-DD-A115 TCGA-DD-A118 TCGA-DD-A11A TCGA-DD-A1EI 
        0.13        79.73        83.57       112.96         2.60         6.02 
TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39X TCGA-DD-A3A9 TCGA-DD-A4NE TCGA-DD-A4NJ 
       29.16        13.64        55.66        30.58        21.67        15.06 
TCGA-DD-A4NQ TCGA-ED-A459 TCGA-FV-A496 TCGA-FV-A4ZP TCGA-G3-A25S TCGA-G3-A25X 
       12.26         0.23         0.33        60.36         1.22        58.49 
TCGA-G3-A3CH TCGA-G3-A5SM 
       25.64         4.37 

$`DEL PEAK 27(19P13.3) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T 
       48.99        27.91        37.32        10.13        46.78        27.52 
TCGA-BC-A10U TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A216 
       27.52        25.32        23.34         1.12        69.57        44.42 
TCGA-BC-A217 TCGA-BC-A3KG TCGA-BC-A5W4 TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 
       13.81        16.37         9.50         2.86         3.02         3.39 
TCGA-CC-A3M9 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-DD-A114 TCGA-DD-A116 TCGA-DD-A119 
        0.10         0.07         0.10        37.74        53.29         7.33 
TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EB 
        0.46        21.76        51.25        90.67        79.36        66.31 
TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE TCGA-DD-A1EF TCGA-DD-A1EH TCGA-DD-A39V 
       19.76        75.65         6.67        12.95        49.15        21.14 
TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 
        5.59        19.73        25.81         7.66        70.06        17.59 
TCGA-DD-A3A4 TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 TCGA-DD-A3A8 TCGA-DD-A4NA 
       20.12       102.74       107.11        13.78         0.36        33.14 
TCGA-DD-A4ND TCGA-DD-A4NF TCGA-DD-A4NG TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NK 
       73.38        14.07        14.93        14.24        10.78        39.75 
TCGA-DD-A4NL TCGA-DD-A4NN TCGA-DD-A4NO TCGA-DD-A4NP TCGA-ED-A5KG TCGA-EP-A12J 
       56.25        29.56        61.45        93.67         0.20        10.85 
TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC TCGA-EP-A3JL TCGA-EP-A3RK 
        7.76        11.74         1.97         0.62         3.19         0.43 
TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A2QR TCGA-FV-A3I0 TCGA-FV-A3R2 
       23.01        14.40        32.45        19.07         0.20         6.35 
TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A4ZQ TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V 
        0.13         0.03         0.39        51.02        53.79        28.27 
TCGA-G3-A25W TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CI TCGA-G3-A3CJ 
       30.71        14.86        21.53        22.13         5.88        19.53 
TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SK TCGA-G3-A5SL 
       19.23        11.97         9.93         7.99 

  DEL PEAK 27(19P13.3) MUTATED DEL PEAK 27(19P13.3) WILD-TYPE 
                          0.07                           0.03 
  DEL PEAK 27(19P13.3) MUTATED DEL PEAK 27(19P13.3) WILD-TYPE 
                        112.96                         107.11 
  DEL PEAK 27(19P13.3) MUTATED DEL PEAK 27(19P13.3) WILD-TYPE 
                          9.14                          19.15 
[1] "0.1 - 113.0 (9.1)"  "0.0 - 107.1 (19.1)"
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 27(19P13.3) WILD-TYPE"   "DEL PEAK 27(19P13.3) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 27(19P13.3) WILD-TYPE"   "DEL PEAK 27(19P13.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 27(19P13.3) MUTATED"   "DEL PEAK 27(19P13.3) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 27(19P13.3) WILD-TYPE"   "DEL PEAK 27(19P13.3) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "DEL PEAK 27(19P13.3) MUTATED"   "DEL PEAK 27(19P13.3) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"DEL PEAK 27(19P13.3) WILD-TYPE"   "DEL PEAK 27(19P13.3) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
  "DEL PEAK 27(19P13.3) MUTATED"   "DEL PEAK 27(19P13.3) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
  "DEL PEAK 27(19P13.3) MUTATED"   "DEL PEAK 27(19P13.3) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK 27(19P13.3) WILD-TYPE"   "DEL PEAK 27(19P13.3) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"DEL PEAK 27(19P13.3) WILD-TYPE"   "DEL PEAK 27(19P13.3) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 27(19P13.3) WILD-TYPE"   "DEL PEAK 27(19P13.3) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 27(19P13.3) WILD-TYPE"   "DEL PEAK 27(19P13.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 27(19P13.3) MUTATED"   "DEL PEAK 27(19P13.3) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 27(19P13.3) WILD-TYPE"   "DEL PEAK 27(19P13.3) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "DEL PEAK 27(19P13.3) MUTATED"   "DEL PEAK 27(19P13.3) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"DEL PEAK 27(19P13.3) WILD-TYPE"   "DEL PEAK 27(19P13.3) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
  "DEL PEAK 27(19P13.3) MUTATED"   "DEL PEAK 27(19P13.3) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
  "DEL PEAK 27(19P13.3) MUTATED"   "DEL PEAK 27(19P13.3) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK 27(19P13.3) WILD-TYPE"   "DEL PEAK 27(19P13.3) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"DEL PEAK 27(19P13.3) WILD-TYPE"   "DEL PEAK 27(19P13.3) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 27(19P13.3) WILD-TYPE"   "DEL PEAK 27(19P13.3) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 27(19P13.3) WILD-TYPE"   "DEL PEAK 27(19P13.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-BC-A5W4 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-CC-5258                     TCGA-CC-5260 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-CC-5261                     TCGA-CC-5262 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-CC-A1HT 
  "DEL PEAK 27(19P13.3) MUTATED"   "DEL PEAK 27(19P13.3) MUTATED" 
                    TCGA-CC-A3M9                     TCGA-CC-A3MA 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-CC-A3MB                     TCGA-CC-A3MC 
"DEL PEAK 27(19P13.3) WILD-TYPE"   "DEL PEAK 27(19P13.3) MUTATED" 
                    TCGA-DD-A113                     TCGA-DD-A114 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A115                     TCGA-DD-A116 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A118                     TCGA-DD-A119 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A11A                     TCGA-DD-A11B 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A11C                     TCGA-DD-A11D 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1E9                     TCGA-DD-A1EA 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1EB                     TCGA-DD-A1EC 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1ED                     TCGA-DD-A1EE 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1EF                     TCGA-DD-A1EH 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1EI                     TCGA-DD-A1EJ 
  "DEL PEAK 27(19P13.3) MUTATED"   "DEL PEAK 27(19P13.3) MUTATED" 
                    TCGA-DD-A1EL                     TCGA-DD-A39V 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A39X                     TCGA-DD-A39Y 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A39Z                     TCGA-DD-A3A0 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A3A1                     TCGA-DD-A3A2 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A3A3                     TCGA-DD-A3A4 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A3A5                     TCGA-DD-A3A6 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A3A7                     TCGA-DD-A3A8 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A3A9                     TCGA-DD-A4NA 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4ND                     TCGA-DD-A4NE 
"DEL PEAK 27(19P13.3) WILD-TYPE"   "DEL PEAK 27(19P13.3) MUTATED" 
                    TCGA-DD-A4NF                     TCGA-DD-A4NG 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NH                     TCGA-DD-A4NI 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NJ                     TCGA-DD-A4NK 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NL                     TCGA-DD-A4NN 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NO                     TCGA-DD-A4NP 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-DD-A4NQ                     TCGA-ED-A459 
  "DEL PEAK 27(19P13.3) MUTATED"   "DEL PEAK 27(19P13.3) MUTATED" 
                    TCGA-ED-A5KG                     TCGA-EP-A12J 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-EP-A26S                     TCGA-EP-A2KA 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-EP-A2KB                     TCGA-EP-A2KC 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-EP-A3JL                     TCGA-EP-A3RK 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-ES-A2HS                     TCGA-ES-A2HT 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-FV-A23B                     TCGA-FV-A2QR 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-FV-A3I0                     TCGA-FV-A3R2 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-FV-A3R3                     TCGA-FV-A495 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-FV-A496                     TCGA-FV-A4ZP 
  "DEL PEAK 27(19P13.3) MUTATED"   "DEL PEAK 27(19P13.3) MUTATED" 
                    TCGA-FV-A4ZQ                     TCGA-G3-A25S 
"DEL PEAK 27(19P13.3) WILD-TYPE"   "DEL PEAK 27(19P13.3) MUTATED" 
                    TCGA-G3-A25T                     TCGA-G3-A25U 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25V                     TCGA-G3-A25W 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25X                     TCGA-G3-A25Y 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25Z                     TCGA-G3-A3CG 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-G3-A3CH                     TCGA-G3-A3CI 
  "DEL PEAK 27(19P13.3) MUTATED" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-G3-A3CJ                     TCGA-G3-A3CK 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-G3-A5SJ                     TCGA-G3-A5SK 
"DEL PEAK 27(19P13.3) WILD-TYPE" "DEL PEAK 27(19P13.3) WILD-TYPE" 
                    TCGA-G3-A5SL                     TCGA-G3-A5SM 
"DEL PEAK 27(19P13.3) WILD-TYPE"   "DEL PEAK 27(19P13.3) MUTATED" 
[1] "hr=" "1.1"
D52V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 27(19P13.3) MUTATED         6       10         0          7
  DEL PEAK 27(19P13.3) WILD-TYPE      39       15         2         18
                                vv
clus                             STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 27(19P13.3) MUTATED            0          1        0         0
  DEL PEAK 27(19P13.3) WILD-TYPE          3          3        1         1
                                vv
clus                             STAGE IVB
  DEL PEAK 27(19P13.3) MUTATED           1
  DEL PEAK 27(19P13.3) WILD-TYPE         0
D52V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 27(19P13.3) MUTATED    7 10  8  2
  DEL PEAK 27(19P13.3) WILD-TYPE 41 18 26  4
D52V4, multiclass
    clus
vv   DEL PEAK 27(19P13.3) MUTATED DEL PEAK 27(19P13.3) WILD-TYPE
  T1                            7                             41
  T2                           10                             18
  T3                            8                             26
  T4                            2                              4
D52V5, binary
                                cls
clus                              0  1
  DEL PEAK 27(19P13.3) MUTATED   19  1
  DEL PEAK 27(19P13.3) WILD-TYPE 55  2
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(19P13.3) MUTATED     19    1
  DEL PEAK 27(19P13.3) WILD-TYPE   55    2
   clus
vv  DEL PEAK 27(19P13.3) MUTATED DEL PEAK 27(19P13.3) WILD-TYPE
  0                           19                             55
  1                            1                              2
                                vv
clus                             M0 M1 MX
  DEL PEAK 27(19P13.3) MUTATED   23  1  3
  DEL PEAK 27(19P13.3) WILD-TYPE 67  1 22
D52V6, multiclass
    clus
vv   DEL PEAK 27(19P13.3) MUTATED DEL PEAK 27(19P13.3) WILD-TYPE
  M0                           23                             67
  M1                            1                              1
  MX                            3                             22
D52V7, binary
                                cls
clus                              0  1
  DEL PEAK 27(19P13.3) MUTATED   10 17
  DEL PEAK 27(19P13.3) WILD-TYPE 34 56
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(19P13.3) MUTATED     10   17
  DEL PEAK 27(19P13.3) WILD-TYPE   34   56
        clus
vv       DEL PEAK 27(19P13.3) MUTATED DEL PEAK 27(19P13.3) WILD-TYPE
  FEMALE                           10                             34
  MALE                             17                             56
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 27(19P13.3) MUTATED   21  3  0  2
  DEL PEAK 27(19P13.3) WILD-TYPE 72  7  1  6
D52V8, multiclass
    clus
vv   DEL PEAK 27(19P13.3) MUTATED DEL PEAK 27(19P13.3) WILD-TYPE
  R0                           21                             72
  R1                            3                              7
  R2                            0                              1
  RX                            2                              6

Clustering(53) Variable = DEL PEAK 28(22Q13.32) MUTATION ANALYSIS
D53V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 28(22Q13.32) MUTATED   16 13
  DEL PEAK 28(22Q13.32) WILD-TYPE 45 40
  DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE 
                             29                              85 
  DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE 
                             13                              40 
$`DEL PEAK 28(22Q13.32) MUTATED`
TCGA-BC-A10Q TCGA-BC-A10T TCGA-BC-A10Y TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG 
       37.32        27.52        23.34        13.81         0.26        16.37 
TCGA-BC-A5W4 TCGA-CC-5260 TCGA-CC-A1HT TCGA-CC-A3M9 TCGA-DD-A113 TCGA-DD-A114 
        9.50         2.86         3.32         0.10        79.73        37.74 
TCGA-DD-A115 TCGA-DD-A1EB TCGA-DD-A39X TCGA-DD-A3A5 TCGA-DD-A3A6 TCGA-DD-A3A7 
       83.57        66.31        55.66       102.74       107.11        13.78 
TCGA-DD-A4NA TCGA-DD-A4NJ TCGA-DD-A4NO TCGA-DD-A4NP TCGA-ED-A459 TCGA-EP-A2KB 
       33.14        15.06        61.45        93.67         0.23         1.97 
TCGA-FV-A2QR TCGA-FV-A4ZP TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A3CJ 
       19.07        60.36         1.22        51.02        19.53 

$`DEL PEAK 28(22Q13.32) WILD-TYPE`
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10U TCGA-BC-A10W 
       48.99        27.91        10.13        46.78        27.52         2.99 
TCGA-BC-A10X TCGA-BC-A10Z TCGA-BC-A110 TCGA-BC-A112 TCGA-BC-A216 TCGA-CC-5258 
       25.32         1.12        69.57         5.03        44.42         0.07 
TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-A3MA TCGA-CC-A3MB TCGA-CC-A3MC 
        3.02         3.39         4.24         0.07         0.10         0.13 
TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C 
       53.29       112.96         7.33         2.60         0.46        21.76 
TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EA TCGA-DD-A1EC TCGA-DD-A1ED TCGA-DD-A1EE 
       51.25        90.67        79.36        19.76        75.65         6.67 
TCGA-DD-A1EF TCGA-DD-A1EH TCGA-DD-A1EI TCGA-DD-A1EJ TCGA-DD-A1EL TCGA-DD-A39V 
       12.95        49.15         6.02        29.16        13.64        21.14 
TCGA-DD-A39Y TCGA-DD-A39Z TCGA-DD-A3A0 TCGA-DD-A3A1 TCGA-DD-A3A2 TCGA-DD-A3A3 
        5.59        19.73        25.81         7.66        70.06        17.59 
TCGA-DD-A3A4 TCGA-DD-A3A8 TCGA-DD-A3A9 TCGA-DD-A4ND TCGA-DD-A4NE TCGA-DD-A4NF 
       20.12         0.36        30.58        73.38        21.67        14.07 
TCGA-DD-A4NG TCGA-DD-A4NH TCGA-DD-A4NI TCGA-DD-A4NK TCGA-DD-A4NL TCGA-DD-A4NN 
       14.93        14.24        10.78        39.75        56.25        29.56 
TCGA-DD-A4NQ TCGA-ED-A5KG TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KC 
       12.26         0.20        10.85         7.76        11.74         0.62 
TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A23B TCGA-FV-A3I0 
        3.19         0.43        23.01        14.40        32.45         0.20 
TCGA-FV-A3R2 TCGA-FV-A3R3 TCGA-FV-A495 TCGA-FV-A496 TCGA-FV-A4ZQ TCGA-G3-A25U 
        6.35         0.13         0.03         0.33         0.39        53.79 
TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG 
       28.27        30.71        58.49        14.86        21.53        22.13 
TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CK TCGA-G3-A5SJ TCGA-G3-A5SK TCGA-G3-A5SL 
       25.64         5.88        19.23        11.97         9.93         7.99 
TCGA-G3-A5SM 
        4.37 

  DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE 
                           0.10                            0.03 
  DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE 
                         107.11                          112.96 
  DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE 
                          23.34                           14.24 
[1] "0.1 - 107.1 (23.3)" "0.0 - 113.0 (14.2)"
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-CC-5261                      TCGA-CC-5262 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A113                      TCGA-DD-A114 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DD-A115                      TCGA-DD-A116 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EH 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EI                      TCGA-DD-A1EJ 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DD-A4ND                      TCGA-DD-A4NE 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NG 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A4NH                      TCGA-DD-A4NI 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A4NJ                      TCGA-DD-A4NK 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A4NL                      TCGA-DD-A4NN 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A4NO                      TCGA-DD-A4NP 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DD-A4NQ                      TCGA-ED-A459 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-ED-A5KG                      TCGA-EP-A12J 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-FV-A3I0                      TCGA-FV-A3R2 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FV-A3R3                      TCGA-FV-A495 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FV-A496                      TCGA-FV-A4ZP 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-FV-A4ZQ                      TCGA-G3-A25S 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SK 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A5SL                      TCGA-G3-A5SM 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-CC-5261                      TCGA-CC-5262 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A113                      TCGA-DD-A114 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DD-A115                      TCGA-DD-A116 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EH 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EI                      TCGA-DD-A1EJ 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DD-A4ND                      TCGA-DD-A4NE 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NG 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A4NH                      TCGA-DD-A4NI 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A4NJ                      TCGA-DD-A4NK 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A4NL                      TCGA-DD-A4NN 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A4NO                      TCGA-DD-A4NP 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DD-A4NQ                      TCGA-ED-A459 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-ED-A5KG                      TCGA-EP-A12J 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-FV-A3I0                      TCGA-FV-A3R2 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FV-A3R3                      TCGA-FV-A495 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FV-A496                      TCGA-FV-A4ZP 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-FV-A4ZQ                      TCGA-G3-A25S 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SK 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A5SL                      TCGA-G3-A5SM 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-BC-A3KG                      TCGA-BC-A5W4 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-CC-5258                      TCGA-CC-5260 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-CC-5261                      TCGA-CC-5262 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-CC-A1HT 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-CC-A3M9                      TCGA-CC-A3MA 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-CC-A3MB                      TCGA-CC-A3MC 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A113                      TCGA-DD-A114 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DD-A115                      TCGA-DD-A116 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A118                      TCGA-DD-A119 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A11A                      TCGA-DD-A11B 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A11C                      TCGA-DD-A11D 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1E9                      TCGA-DD-A1EA 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EB                      TCGA-DD-A1EC 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1ED                      TCGA-DD-A1EE 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EF                      TCGA-DD-A1EH 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EI                      TCGA-DD-A1EJ 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EL                      TCGA-DD-A39V 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A39X                      TCGA-DD-A39Y 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A39Z                      TCGA-DD-A3A0 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A3A1                      TCGA-DD-A3A2 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A3A3                      TCGA-DD-A3A4 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A3A5                      TCGA-DD-A3A6 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DD-A3A7                      TCGA-DD-A3A8 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A3A9                      TCGA-DD-A4NA 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DD-A4ND                      TCGA-DD-A4NE 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A4NF                      TCGA-DD-A4NG 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A4NH                      TCGA-DD-A4NI 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A4NJ                      TCGA-DD-A4NK 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A4NL                      TCGA-DD-A4NN 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A4NO                      TCGA-DD-A4NP 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DD-A4NQ                      TCGA-ED-A459 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-ED-A5KG                      TCGA-EP-A12J 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A26S                      TCGA-EP-A2KA 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A2KB                      TCGA-EP-A2KC 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A3JL                      TCGA-EP-A3RK 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-ES-A2HS                      TCGA-ES-A2HT 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FV-A23B                      TCGA-FV-A2QR 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-FV-A3I0                      TCGA-FV-A3R2 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FV-A3R3                      TCGA-FV-A495 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FV-A496                      TCGA-FV-A4ZP 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-FV-A4ZQ                      TCGA-G3-A25S 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-G3-A25T                      TCGA-G3-A25U 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25V                      TCGA-G3-A25W 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25X                      TCGA-G3-A25Y 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25Z                      TCGA-G3-A3CG 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A3CH                      TCGA-G3-A3CI 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A3CJ                      TCGA-G3-A3CK 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A5SJ                      TCGA-G3-A5SK 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A5SL                      TCGA-G3-A5SM 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
[1] "hr=" "1.7"
D53V2, continuous
                                 vv
clus                              STAGE I STAGE II STAGE III STAGE IIIA
  DEL PEAK 28(22Q13.32) MUTATED         8        8         1          6
  DEL PEAK 28(22Q13.32) WILD-TYPE      37       17         1         19
                                 vv
clus                              STAGE IIIB STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 28(22Q13.32) MUTATED            1          2        0         0
  DEL PEAK 28(22Q13.32) WILD-TYPE          2          2        1         1
                                 vv
clus                              STAGE IVB
  DEL PEAK 28(22Q13.32) MUTATED           0
  DEL PEAK 28(22Q13.32) WILD-TYPE         1
D53V3, multiclass
                                 vv
clus                              T1 T2 T3 T4
  DEL PEAK 28(22Q13.32) MUTATED    8 10  8  3
  DEL PEAK 28(22Q13.32) WILD-TYPE 40 18 26  3
D53V4, multiclass
    clus
vv   DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE
  T1                             8                              40
  T2                            10                              18
  T3                             8                              26
  T4                             3                               3
D53V5, binary
                                 cls
clus                               0  1
  DEL PEAK 28(22Q13.32) MUTATED   19  1
  DEL PEAK 28(22Q13.32) WILD-TYPE 55  2
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 28(22Q13.32) MUTATED     19    1
  DEL PEAK 28(22Q13.32) WILD-TYPE   55    2
   clus
vv  DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE
  0                            19                              55
  1                             1                               2
                                 vv
clus                              M0 M1 MX
  DEL PEAK 28(22Q13.32) MUTATED   26  0  4
  DEL PEAK 28(22Q13.32) WILD-TYPE 64  2 21
D53V6, multiclass
    clus
vv   DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE
  M0                            26                              64
  M1                             0                               2
  MX                             4                              21
D53V7, binary
                                 cls
clus                               0  1
  DEL PEAK 28(22Q13.32) MUTATED   14 16
  DEL PEAK 28(22Q13.32) WILD-TYPE 30 57
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 28(22Q13.32) MUTATED     14   16
  DEL PEAK 28(22Q13.32) WILD-TYPE   30   57
        clus
vv       DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE
  FEMALE                            14                              30
  MALE                              16                              57
                                 vv
clus                              R0 R1 R2 RX
  DEL PEAK 28(22Q13.32) MUTATED   21  5  0  3
  DEL PEAK 28(22Q13.32) WILD-TYPE 72  5  1  5
D53V8, multiclass
    clus
vv   DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE
  R0                            21                              72
  R1                             5                               5
  R2                             0                               1
  RX                             3                               5
> q(save="no")
