		Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1p22.3)	0 (0%)	102	0.0018895	0.744	0.081254	1	0.021278	1	0.034694	1	0.5293	1	0.66908	1	0.53411	1	0.72699	1
Amp Peak  2(1q22)	0 (0%)	39	9.3948e-07	0.000394	7.0302e-05	0.0292	0.21452	1	0.60307	1	0.13005	1	0.059128	1	0.090763	1	0.45856	1
Amp Peak  3(1q42.3)	0 (0%)	44	0.0032369	1	0.0080138	1	0.88521	1	0.28385	1	0.73315	1	0.26963	1	0.40533	1	0.30186	1
Amp Peak  4(2p24.1)	0 (0%)	110	0.00083777	0.336	0.8135	1	0.037606	1	0.039422	1	0.31648	1	0.51111	1	0.72961	1	0.36649	1
Amp Peak  5(2q31.2)	0 (0%)	110	0.0092351	1	0.58323	1	0.39906	1	0.48025	1	0.41915	1	1	1	0.72961	1	0.7205	1
Amp Peak  6(3q26.31)	0 (0%)	113	0.00031685	0.13	0.025584	1	0.10945	1	0.078979	1	0.038526	1	0.021172	1	0.65444	1	0.02064	1
Amp Peak  7(5p15.33)	0 (0%)	71	0.0029555	1	0.24098	1	0.52492	1	0.94745	1	0.23873	1	0.09006	1	0.52004	1	0.234	1
Amp Peak  8(5q35.3)	0 (0%)	92	0.020027	1	0.65334	1	0.85856	1	0.37718	1	0.25419	1	0.47264	1	0.31429	1	0.19782	1
Amp Peak  9(6p25.2)	0 (0%)	81	0.0026173	1	0.0033548	1	0.028161	1	0.19422	1	0.94128	1	0.93592	1	0.45396	1	0.96839	1
Amp Peak 10(6p21.1)	0 (0%)	82	0.0046654	1	0.00011157	0.0461	0.0037486	1	0.97264	1	0.93001	1	0.65261	1	0.33814	1	0.82199	1
Amp Peak 11(7q21.2)	0 (0%)	89	0.18016	1	0.15302	1	0.19215	1	0.3421	1	0.15066	1	0.091425	1	0.84235	1	0.2308	1
Amp Peak 12(8q13.1)	0 (0%)	70	3.5051e-09	1.48e-06	0.57362	1	0.0032212	1	0.34728	1	0.22904	1	0.80292	1	0.38998	1	0.88227	1
Amp Peak 13(8q24.13)	0 (0%)	58	1.7494e-08	7.36e-06	0.30595	1	0.0031697	1	0.40878	1	0.33624	1	0.77308	1	0.57064	1	0.82599	1
Amp Peak 14(9q34.2)	0 (0%)	121	0.16472	1	0.048802	1	0.28543	1	0.067944	1	0.37334	1	0.19288	1	0.64023	1	0.010893	1
Amp Peak 15(10p15.1)	0 (0%)	109	0.51734	1	0.14951	1	0.29431	1	0.32857	1	0.815	1	0.83541	1	0.1617	1	0.91542	1
Amp Peak 16(11q13.3)	0 (0%)	114	0.061129	1	1	1	0.049674	1	0.62303	1	0.05757	1	0.25488	1	0.033344	1	0.39512	1
Amp Peak 17(12q23.1)	0 (0%)	113	0.023233	1	0.39108	1	0.23654	1	0.062645	1	0.83892	1	0.81925	1	0.88299	1	0.95058	1
Amp Peak 18(13q32.3)	0 (0%)	113	0.00037164	0.152	0.040533	1	0.071433	1	0.037287	1	0.18951	1	0.34638	1	0.84649	1	0.4509	1
Amp Peak 19(15q26.3)	0 (0%)	117	0.024523	1	0.81906	1	0.43309	1	0.19671	1	0.45843	1	0.43593	1	0.90841	1	0.38442	1
Amp Peak 20(17p11.2)	0 (0%)	120	0.60963	1	0.93773	1	0.1318	1	0.076844	1	0.87191	1	0.9385	1	1	1	0.93851	1
Amp Peak 21(17q23.1)	0 (0%)	82	0.0081061	1	0.19519	1	0.12863	1	0.28084	1	0.50869	1	0.63513	1	0.70677	1	0.43061	1
Amp Peak 22(17q25.3)	0 (0%)	79	0.00093383	0.373	0.039779	1	0.12976	1	0.80103	1	0.33907	1	0.4921	1	0.36382	1	0.32549	1
Amp Peak 23(19p13.12)	0 (0%)	104	0.041815	1	0.0012477	0.495	0.00086855	0.347	0.0056592	1	0.012628	1	0.086465	1	0.00015895	0.0655	0.23024	1
Amp Peak 24(19q13.11)	0 (0%)	96	0.071675	1	0.15453	1	0.015123	1	0.18288	1	0.25516	1	0.162	1	0.066606	1	0.31799	1
Amp Peak 25(20q13.33)	0 (0%)	87	0.0019568	0.767	0.046428	1	0.020167	1	0.060303	1	0.58499	1	0.90574	1	0.31891	1	0.8213	1
Del Peak  1(1p36.32)	0 (0%)	78	0.016516	1	0.010492	1	0.040972	1	0.26332	1	0.81942	1	0.77381	1	0.94848	1	0.61881	1
Del Peak  2(1p35.2)	0 (0%)	90	0.032358	1	0.0062503	1	0.059873	1	0.031871	1	0.4243	1	0.16495	1	0.64906	1	0.096857	1
Del Peak  3(2q22.1)	0 (0%)	123	0.11903	1	0.087168	1	0.04421	1	0.6432	1	0.031624	1	0.0085546	1	0.52617	1	0.018088	1
Del Peak  4(2q37.3)	0 (0%)	112	0.0033346	1	0.80418	1	0.00070758	0.285	0.25089	1	0.07036	1	0.042061	1	0.43693	1	0.11384	1
Del Peak  5(3p13)	0 (0%)	117	0.025836	1	0.12693	1	3.878e-05	0.0161	0.0011661	0.464	0.096106	1	0.32867	1	0.06395	1	0.038723	1
Del Peak  6(4p16.1)	0 (0%)	111	0.30809	1	0.029829	1	0.3156	1	0.39143	1	0.64037	1	0.58209	1	0.15722	1	0.21662	1
Del Peak  7(4q25)	0 (0%)	75	6.2521e-07	0.000263	0.0081229	1	0.0058389	1	0.14736	1	0.76749	1	0.9095	1	0.50577	1	0.82725	1
Del Peak  8(4q35.1)	0 (0%)	80	0.00048661	0.198	0.002793	1	0.0073968	1	0.26332	1	0.92264	1	0.68229	1	1	1	0.54765	1
Del Peak  9(5q23.1)	0 (0%)	120	0.28441	1	0.14933	1	0.90986	1	0.21093	1	0.33592	1	0.64282	1	0.62136	1	0.4612	1
Del Peak 10(6q16.3)	0 (0%)	91	0.0090316	1	0.52538	1	0.0023879	0.924	0.13387	1	0.13682	1	0.40974	1	0.70149	1	0.32973	1
Del Peak 11(6q26)	0 (0%)	86	0.0021118	0.824	0.16455	1	0.0089352	1	0.050351	1	0.0049583	1	0.11126	1	0.48113	1	0.064297	1
Del Peak 12(8p23.2)	0 (0%)	55	1.281e-15	5.43e-13	0.069326	1	0.58353	1	0.61737	1	0.56754	1	0.50404	1	1	1	0.45638	1
Del Peak 13(8p11.22)	0 (0%)	72	7.2675e-15	3.07e-12	0.36652	1	0.81634	1	0.50742	1	0.75365	1	0.33847	1	0.62555	1	0.16976	1
Del Peak 14(9p21.3)	0 (0%)	89	0.0065603	1	0.76638	1	0.077734	1	0.23862	1	0.67931	1	0.58066	1	1	1	0.35948	1
Del Peak 15(9q34.3)	0 (0%)	91	0.00081994	0.33	0.083901	1	0.03478	1	0.23546	1	0.94006	1	0.2967	1	0.79233	1	0.15181	1
Del Peak 16(10q23.31)	0 (0%)	92	0.0019199	0.755	0.6225	1	0.00027727	0.114	0.041937	1	0.040686	1	0.13084	1	0.054862	1	0.38067	1
Del Peak 17(11q23.3)	0 (0%)	109	0.21923	1	0.44466	1	0.1552	1	0.16512	1	0.7769	1	0.65874	1	0.017228	1	0.55026	1
Del Peak 18(12p12.1)	0 (0%)	107	0.014491	1	0.38179	1	0.0027638	1	0.32904	1	0.31183	1	0.21366	1	0.26775	1	0.32278	1
Del Peak 19(12q24.33)	0 (0%)	115	0.0049574	1	0.20432	1	0.096779	1	0.32161	1	0.89101	1	0.72363	1	0.76837	1	0.62091	1
Del Peak 20(13q14.2)	0 (0%)	76	2.0253e-06	0.000847	0.22958	1	9.1342e-05	0.0378	0.016865	1	0.0018108	0.715	0.10855	1	0.0065178	1	0.1791	1
Del Peak 21(13q22.2)	0 (0%)	88	0.0004309	0.176	0.14831	1	0.00049309	0.2	0.18816	1	0.032823	1	0.48627	1	0.059478	1	0.47528	1
Del Peak 22(14q23.3)	0 (0%)	90	0.13375	1	0.06089	1	0.0005479	0.222	0.0049526	1	0.24655	1	0.10062	1	0.19621	1	0.061525	1
Del Peak 23(16q23.1)	0 (0%)	81	0.013883	1	0.0093645	1	0.0023333	0.905	0.019815	1	0.2829	1	0.099769	1	0.74575	1	0.10504	1
Del Peak 24(17p13.3)	0 (0%)	62	3.3183e-06	0.00138	0.21571	1	0.0055257	1	0.066486	1	0.0031476	1	0.0022543	0.877	0.031339	1	0.0020257	0.792
Del Peak 25(17p11.2)	0 (0%)	62	0.0013014	0.515	0.29817	1	0.06407	1	0.025154	1	0.00062823	0.254	0.0034895	1	0.17748	1	0.0024964	0.964
Del Peak 26(18q21.2)	0 (0%)	111	0.01627	1	0.015079	1	0.077739	1	0.69451	1	0.32139	1	0.58209	1	0.64137	1	0.45888	1
Del Peak 27(19p13.3)	0 (0%)	107	0.078916	1	0.016928	1	0.0084115	1	0.41042	1	0.15712	1	0.19077	1	0.59993	1	0.10492	1
Del Peak 28(22q13.32)	0 (0%)	100	0.05491	1	0.55043	1	0.084385	1	0.62906	1	0.87929	1	0.26493	1	0.96832	1	0.76335	1
