		Molecular subtypes	MRNA_CNMF		MRNA_CHIERARCHICAL		MIR_CNMF		MIR_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	0 (0%)	465	0.16295	1	0.31346	1	0.12039	1	0.80107	1	0.19654	1	0.84825	1	0.040032	1	0.33322	1	0.69359	1	0.34382	1	0.1246	1	0.71429	1	0.028709	1	1	1
1q gain	0 (0%)	408	0.49727	1	0.35978	1	0.61769	1	0.15824	1	7.4537e-06	0.00812	0.056973	1	0.36512	1	0.79794	1	0.63953	1	0.61931	1	0.20645	1	0.45684	1	0.1673	1	0.22807	1
2p gain	0 (0%)	440	2.5555e-09	2.83e-06	4.88e-09	5.39e-06	0.61246	1	6.2388e-07	0.000685	7.2439e-11	8.05e-08	8.046e-11	8.93e-08	0.036288	1	0.43918	1	8.6968e-05	0.0933	0.0045651	1	0.42647	1	0.20857	1	0.75166	1	0.38403	1
2q gain	0 (0%)	466	7.1581e-07	0.000785	6.2013e-06	0.00677	0.38016	1	0.00018771	0.2	3.0372e-08	3.35e-05	1.0645e-05	0.0116	0.033757	1	0.32914	1	0.0018348	1	0.0044742	1	0.53464	1	0.48051	1	0.40311	1	0.19319	1
3p gain	0 (0%)	461	0.36305	1	0.6434	1	0.15605	1	0.4635	1	0.001892	1	0.44403	1	0.20096	1	0.46426	1	0.63314	1	0.88875	1	0.7967	1	0.61775	1	0.79866	1	0.30726	1
3q gain	0 (0%)	362	0.9363	1	0.6976	1	0.61695	1	0.80255	1	5.9931e-09	6.62e-06	0.0012785	1	0.44667	1	0.24824	1	0.35198	1	0.67807	1	0.38684	1	0.44891	1	0.065221	1	0.63799	1
4p gain	0 (0%)	539	0.83802	1	0.86136	1	0.005197	1	0.39067	1	0.090389	1	0.10036	1	0.014865	1	0.45762	1	0.95282	1	0.57286	1	0.27219	1	0.28592	1	0.17867	1	0.11302	1
4q gain	0 (0%)	554	0.94809	1	0.61784	1	0.68635	1	0.9011	1	0.34989	1	0.037277	1	0.020772	1	0.25723	1	0.91311	1	0.58536	1	0.0038492	1	0.047904	1	0.0015689	1	0.062631	1
5p gain	0 (0%)	424	0.74145	1	0.90643	1	0.69425	1	0.33648	1	4.4364e-07	0.000488	0.38342	1	0.58946	1	0.15536	1	0.54422	1	0.90517	1	0.056323	1	0.24216	1	0.12783	1	0.13969	1
5q gain	0 (0%)	536	0.041666	1	0.11524	1	0.91926	1	0.26451	1	0.59757	1	0.34564	1	0.15656	1	0.58048	1	0.31644	1	0.65844	1	0.038975	1	0.42186	1	0.17712	1	0.42132	1
6p gain	0 (0%)	448	0.4527	1	0.082859	1	0.84108	1	0.10643	1	1.4405e-06	0.00158	0.0024629	1	0.54553	1	0.74449	1	0.15364	1	0.61917	1	0.29139	1	0.14736	1	0.41562	1	0.092361	1
6q gain	0 (0%)	508	0.7168	1	0.13904	1	0.6938	1	0.046864	1	1.1851e-05	0.0129	0.00011724	0.126	0.14014	1	0.85668	1	0.0031371	1	0.35442	1	0.9301	1	0.41641	1	0.92734	1	0.023701	1
7p gain	0 (0%)	443	0.20487	1	0.2047	1	0.20777	1	0.38178	1	3.5365e-08	3.9e-05	1.3189e-05	0.0143	0.48643	1	0.12635	1	0.083643	1	0.10863	1	0.89266	1	0.41235	1	0.35867	1	0.21947	1
7q gain	0 (0%)	415	0.079486	1	0.075032	1	0.59321	1	0.22351	1	4.3277e-06	0.00473	0.0022071	1	0.31587	1	0.075706	1	0.17509	1	0.17344	1	0.20851	1	0.57159	1	0.07187	1	0.56162	1
8p gain	0 (0%)	484	0.20519	1	0.086782	1	0.95415	1	0.1378	1	0.27691	1	0.71895	1	0.82971	1	0.23221	1	0.54669	1	0.2315	1	0.57854	1	0.34549	1	0.88938	1	0.29956	1
8q gain	0 (0%)	366	0.056493	1	0.15434	1	0.07284	1	0.61458	1	0.016737	1	0.9811	1	0.78613	1	0.12478	1	0.0038502	1	0.37985	1	0.81157	1	0.79525	1	0.42836	1	0.80063	1
9p gain	0 (0%)	507	0.01689	1	0.30479	1	0.31754	1	0.65886	1	0.010512	1	0.0095278	1	0.18357	1	0.68826	1	0.89614	1	0.58663	1	0.15685	1	0.74769	1	0.73414	1	0.29313	1
9q gain	0 (0%)	541	0.49878	1	0.70454	1	0.26027	1	0.23012	1	0.28281	1	0.23371	1	0.51923	1	0.20775	1	0.8134	1	0.048399	1	0.74888	1	0.87116	1	0.7686	1	0.89748	1
10p gain	0 (0%)	438	0.010889	1	0.024794	1	0.7232	1	0.046155	1	2.4144e-09	2.68e-06	0.00015892	0.17	0.2939	1	0.45435	1	0.012621	1	0.86548	1	0.50717	1	0.96254	1	0.3992	1	0.073371	1
10q gain	0 (0%)	502	0.0096869	1	0.024958	1	0.7848	1	0.031057	1	0.015188	1	0.010622	1	0.28258	1	0.51093	1	0.079979	1	0.31168	1	0.38032	1	0.56963	1	0.75309	1	0.24973	1
11p gain	0 (0%)	530	0.39257	1	0.1573	1	0.28205	1	0.27075	1	0.014158	1	0.031372	1	0.022531	1	0.0044087	1	0.042674	1	0.28394	1	0.12078	1	0.18341	1	0.30626	1	0.33039	1
11q gain	0 (0%)	508	0.61553	1	0.29927	1	0.8296	1	0.66109	1	1.943e-05	0.021	0.0015343	1	0.36933	1	0.45147	1	0.57713	1	0.22077	1	0.28109	1	0.43587	1	1	1	0.69144	1
12p gain	0 (0%)	361	2.4848e-05	0.0268	2.0093e-05	0.0217	0.40245	1	0.0012239	1	6.5748e-14	7.32e-11	3.8824e-09	4.29e-06	0.36228	1	0.82455	1	1.464e-05	0.0159	0.00033023	0.35	0.18326	1	0.19382	1	0.27925	1	0.10287	1
12q gain	0 (0%)	447	0.00024669	0.262	7.9156e-06	0.00862	0.82461	1	0.0007671	0.807	6.4303e-15	7.17e-12	2.8416e-06	0.00311	0.0093259	1	0.6627	1	0.00073145	0.77	0.002353	1	0.1021	1	0.11896	1	0.19629	1	0.12183	1
13q gain	0 (0%)	529	0.062735	1	0.02586	1	0.93152	1	0.0064488	1	0.00061604	0.65	0.00059707	0.631	0.70083	1	0.36058	1	0.4509	1	0.94867	1	0.19421	1	0.53622	1	0.67646	1	0.36802	1
14q gain	0 (0%)	536	0.011868	1	0.040314	1	0.61931	1	0.0055041	1	0.95043	1	0.14499	1	0.064406	1	0.0097759	1	0.27288	1	0.036228	1	0.46011	1	0.64157	1	0.46283	1	0.64348	1
15q gain	0 (0%)	545	0.31905	1	0.15109	1	0.36864	1	0.6275	1	0.27799	1	0.59736	1	0.16581	1	0.82401	1	1	1	1	1	0.63843	1	0.54036	1	0.76903	1	0.33213	1
16p gain	0 (0%)	540	0.063297	1	0.05648	1	0.97063	1	0.40187	1	0.16713	1	0.15156	1	0.67479	1	0.10145	1	1	1	1	1	1	1	0.71958	1	0.87815	1	0.58105	1
16q gain	0 (0%)	554	0.013328	1	0.22504	1	0.28641	1	0.093781	1	0.90254	1	0.060998	1	0.51217	1	0.12387	1	NA	NA	NA	NA	0.11882	1	0.26851	1	0.11931	1	0.075919	1
17p gain	0 (0%)	558	0.26395	1	0.20149	1	0.22068	1	0.64514	1	0.043068	1	0.40709	1	0.4141	1	0.79496	1	0.35173	1	0.63157	1	0.58019	1	0.36479	1	0.34311	1	0.10987	1
17q gain	0 (0%)	546	0.8931	1	0.70828	1	0.13628	1	0.22093	1	0.051624	1	0.30586	1	0.50852	1	0.92151	1	0.59097	1	0.68348	1	0.69524	1	0.46579	1	0.82955	1	0.23536	1
18p gain	0 (0%)	496	0.028811	1	0.011704	1	0.8971	1	0.12043	1	0.0070689	1	0.00021703	0.231	0.0028287	1	0.073145	1	0.52655	1	0.61144	1	0.27146	1	0.58921	1	0.25976	1	0.40592	1
18q gain	0 (0%)	529	0.43894	1	0.42572	1	0.67846	1	0.4181	1	0.089201	1	0.044395	1	0.20572	1	0.45416	1	0.61417	1	0.43977	1	0.13648	1	0.79183	1	0.13654	1	0.59725	1
19p gain	0 (0%)	471	0.017636	1	0.05617	1	0.80845	1	0.37108	1	7.7138e-08	8.49e-05	0.0013615	1	0.015067	1	0.23515	1	0.74126	1	0.82177	1	0.67697	1	0.3114	1	0.57276	1	0.92996	1
19q gain	0 (0%)	479	0.009812	1	0.11697	1	0.76754	1	0.10065	1	1.2448e-06	0.00136	0.0014726	1	0.01518	1	0.19679	1	0.5578	1	0.52494	1	0.23497	1	0.1871	1	0.22069	1	0.50199	1
20p gain	0 (0%)	335	0.0021951	1	0.0013348	1	0.11449	1	0.0029102	1	2.0478e-15	2.29e-12	2.7622e-11	3.07e-08	0.32174	1	0.57179	1	0.0037546	1	0.14405	1	0.56911	1	1	1	0.96056	1	0.33345	1
20q gain	0 (0%)	296	1.3237e-05	0.0143	9.7222e-06	0.0106	0.47743	1	0.0042259	1	1.5728e-20	1.76e-17	3.0444e-15	3.4e-12	0.45641	1	0.17546	1	0.0032992	1	0.3947	1	0.35065	1	0.87726	1	0.82837	1	0.21176	1
21q gain	0 (0%)	500	0.37437	1	0.23137	1	0.50017	1	0.64584	1	2.2035e-05	0.0238	0.0002892	0.307	0.2896	1	0.25904	1	0.37056	1	0.17061	1	0.23062	1	0.68336	1	0.34508	1	0.51197	1
22q gain	0 (0%)	561	0.38226	1	0.097852	1	0.52669	1	0.40039	1	0.20487	1	0.91807	1	0.60354	1	0.70144	1	0.83266	1	1	1	0.043254	1	0.47395	1	0.08317	1	0.50617	1
Xq gain	0 (0%)	535	0.13312	1	0.1901	1	0.94986	1	0.18979	1	0.008985	1	0.049463	1	0.090381	1	0.32809	1	0.39338	1	0.4998	1	0.20333	1	0.76711	1	0.0020288	1	0.60555	1
1p loss	0 (0%)	535	0.0045186	1	0.041009	1	0.16446	1	0.40073	1	0.95139	1	0.20882	1	0.50324	1	0.51377	1	0.73621	1	0.36082	1	1	1	1	1	0.12895	1	0.81828	1
1q loss	0 (0%)	548	0.018268	1	0.022636	1	0.0094354	1	0.10597	1	0.22679	1	0.55935	1	0.64762	1	0.18907	1	0.79644	1	0.096428	1	0.3288	1	0.84338	1	0.44874	1	0.62874	1
2p loss	0 (0%)	544	0.667	1	0.51878	1	0.93469	1	0.039803	1	0.35745	1	0.93664	1	0.33212	1	0.58514	1	0.17823	1	0.29035	1	0.83336	1	0.22889	1	0.48488	1	0.89748	1
2q loss	0 (0%)	540	0.76533	1	0.5832	1	0.94285	1	0.041241	1	0.51521	1	0.37214	1	0.28727	1	0.66814	1	0.54632	1	0.24334	1	0.67592	1	0.10933	1	0.59775	1	0.49695	1
3p loss	0 (0%)	509	0.075042	1	0.0554	1	0.89502	1	0.61786	1	0.0017768	1	0.053776	1	0.86993	1	0.24993	1	0.018136	1	0.45827	1	0.19387	1	0.534	1	0.82981	1	0.064071	1
3q loss	0 (0%)	547	0.26742	1	0.10727	1	1	1	0.47634	1	0.093053	1	0.27878	1	0.59221	1	0.60643	1	0.080309	1	0.27615	1	0.48902	1	0.68426	1	1	1	0.38241	1
4p loss	0 (0%)	306	0.18946	1	0.60029	1	0.47262	1	0.78491	1	0.010746	1	0.9319	1	0.14517	1	0.24288	1	0.15212	1	0.29226	1	0.048624	1	0.013504	1	0.021138	1	0.014597	1
4q loss	0 (0%)	267	0.079357	1	0.37012	1	0.40352	1	0.2291	1	0.0022533	1	0.75438	1	0.28585	1	0.092452	1	0.46976	1	0.03565	1	0.047057	1	0.00025273	0.268	0.0055179	1	0.0034616	1
5p loss	0 (0%)	483	0.3454	1	0.24885	1	0.35206	1	0.24827	1	0.012062	1	0.012285	1	0.16117	1	0.099488	1	0.00040668	0.43	0.56173	1	0.89396	1	0.55759	1	0.82695	1	0.081118	1
5q loss	0 (0%)	397	0.00010825	0.116	0.0020219	1	0.6245	1	0.0053177	1	4.3859e-05	0.0472	1.4084e-07	0.000155	0.0059933	1	0.041041	1	0.00066396	0.7	0.28447	1	0.5071	1	0.52475	1	0.22466	1	0.24037	1
6p loss	0 (0%)	444	0.99115	1	0.25664	1	0.64005	1	0.59804	1	0.23324	1	0.19429	1	0.21208	1	0.40748	1	0.47979	1	0.79656	1	0.18022	1	1	1	0.033088	1	0.81149	1
6q loss	0 (0%)	372	0.96031	1	0.38136	1	0.92829	1	0.38502	1	0.10793	1	0.11882	1	0.098587	1	0.65295	1	0.12425	1	0.19354	1	0.21101	1	0.8119	1	0.075684	1	0.70669	1
7p loss	0 (0%)	479	0.91396	1	0.25943	1	0.36066	1	0.3532	1	0.081601	1	0.1054	1	0.38224	1	0.76663	1	0.94356	1	0.034714	1	0.025898	1	0.71828	1	0.25918	1	0.45813	1
7q loss	0 (0%)	522	0.77802	1	0.41354	1	0.48805	1	0.61105	1	0.2722	1	0.028825	1	0.34938	1	0.7556	1	0.57884	1	0.21966	1	0.053667	1	0.83667	1	0.1154	1	1	1
8p loss	0 (0%)	334	0.71535	1	0.66857	1	0.96267	1	0.52094	1	0.0041017	1	0.12232	1	0.19909	1	0.3505	1	0.34002	1	0.91397	1	0.47139	1	0.19113	1	0.96794	1	0.26257	1
8q loss	0 (0%)	506	0.046512	1	0.47271	1	0.2888	1	0.13424	1	0.0069716	1	0.11346	1	0.076626	1	0.48452	1	0.039285	1	0.04403	1	0.78856	1	0.38041	1	0.86555	1	0.59924	1
9p loss	0 (0%)	358	0.0031456	1	0.0016534	1	0.7386	1	0.0096541	1	0.015654	1	0.00021793	0.232	0.67382	1	0.97575	1	0.56685	1	0.13376	1	0.040209	1	0.3305	1	0.049363	1	0.4254	1
9q loss	0 (0%)	329	0.0021506	1	0.0054764	1	0.18544	1	0.0033922	1	3.3012e-12	3.67e-09	0.0026684	1	0.653	1	0.88138	1	0.0027623	1	0.21167	1	0.10882	1	0.030881	1	0.10023	1	0.0091853	1
10p loss	0 (0%)	503	0.41257	1	0.69552	1	0.26881	1	0.75679	1	0.77827	1	0.88181	1	0.19336	1	0.20523	1	0.96423	1	0.6594	1	0.1094	1	0.61294	1	0.078275	1	0.43194	1
10q loss	0 (0%)	479	0.53781	1	0.11249	1	0.086681	1	0.92425	1	0.24694	1	0.43818	1	0.25929	1	0.22741	1	0.76289	1	0.26	1	0.24825	1	0.22232	1	0.5433	1	0.73297	1
11p loss	0 (0%)	424	0.020289	1	0.0075158	1	0.082582	1	0.2629	1	0.063289	1	0.0017506	1	0.55809	1	0.13329	1	0.021253	1	0.68689	1	0.78732	1	0.80869	1	0.069176	1	0.40199	1
11q loss	0 (0%)	463	0.1695	1	0.16784	1	0.0055369	1	0.075065	1	0.093993	1	0.025111	1	0.84513	1	0.099516	1	0.073346	1	0.79656	1	0.28232	1	0.15618	1	0.041947	1	0.033913	1
12p loss	0 (0%)	519	0.46452	1	0.21889	1	0.96366	1	0.83399	1	0.007762	1	0.24725	1	0.97102	1	0.059675	1	0.29621	1	0.43977	1	0.59089	1	0.27694	1	0.35416	1	0.60175	1
12q loss	0 (0%)	494	0.094007	1	0.017363	1	0.79814	1	0.55752	1	0.0027883	1	0.14583	1	0.83859	1	0.26609	1	0.14854	1	0.016182	1	0.42131	1	0.33484	1	0.36452	1	0.57876	1
13q loss	0 (0%)	307	0.064881	1	0.044805	1	0.64851	1	0.52005	1	0.0011933	1	3.2247e-06	0.00352	0.002101	1	0.0034058	1	0.29707	1	0.98503	1	0.3876	1	0.89693	1	0.25602	1	0.8299	1
14q loss	0 (0%)	406	0.084111	1	0.067545	1	0.87395	1	0.69812	1	8.0989e-05	0.087	0.0080694	1	0.96636	1	0.47856	1	0.045438	1	0.55716	1	0.4301	1	0.35573	1	0.68875	1	0.56175	1
15q loss	0 (0%)	350	0.0014649	1	0.012076	1	0.00094218	0.99	0.00037687	0.399	1.1077e-10	1.23e-07	2.4741e-05	0.0267	0.88355	1	0.88461	1	0.024465	1	0.44881	1	0.0050396	1	0.38675	1	0.035024	1	0.0034348	1
16p loss	0 (0%)	299	0.94052	1	0.83526	1	0.35476	1	0.97615	1	0.050784	1	0.082446	1	0.88807	1	0.9312	1	0.36683	1	0.7197	1	0.22788	1	0.59109	1	0.47744	1	0.23932	1
16q loss	0 (0%)	208	0.98046	1	0.56817	1	0.17433	1	0.40817	1	0.015931	1	0.12071	1	0.73291	1	0.97296	1	0.49213	1	0.81181	1	0.31844	1	0.11701	1	0.14156	1	0.19512	1
17p loss	0 (0%)	141	0.17065	1	0.0040477	1	0.69945	1	0.38882	1	0.27052	1	0.031125	1	0.52534	1	0.17806	1	0.29504	1	0.11924	1	0.33909	1	0.41755	1	0.16221	1	0.71222	1
17q loss	0 (0%)	238	0.011428	1	0.00020664	0.22	0.0047145	1	0.47029	1	0.69833	1	0.25844	1	0.18766	1	0.12744	1	0.12763	1	0.10867	1	0.0073363	1	0.28762	1	4.778e-05	0.0514	0.25872	1
18p loss	0 (0%)	383	0.58135	1	0.91257	1	0.24458	1	0.68759	1	0.18645	1	0.024312	1	0.94108	1	0.23955	1	0.01799	1	0.20641	1	0.88053	1	0.91722	1	0.69555	1	0.56509	1
18q loss	0 (0%)	334	0.068751	1	0.26022	1	0.52367	1	0.47167	1	0.75886	1	0.51218	1	0.96308	1	0.13963	1	0.0028468	1	0.10282	1	0.66878	1	0.46685	1	0.57291	1	0.16766	1
19p loss	0 (0%)	423	0.78716	1	0.17273	1	0.20278	1	0.13096	1	0.11204	1	0.075585	1	0.017679	1	0.11951	1	0.4664	1	0.71031	1	0.97156	1	0.75505	1	0.92253	1	1	1
19q loss	0 (0%)	424	0.33041	1	0.11888	1	0.21474	1	0.38854	1	0.15932	1	0.62552	1	0.045368	1	0.39269	1	1	1	0.87081	1	0.20647	1	0.35797	1	0.35169	1	0.3558	1
20p loss	0 (0%)	532	0.3219	1	0.54241	1	0.41413	1	0.34484	1	0.15694	1	0.46311	1	0.65678	1	0.44681	1	0.020756	1	0.075894	1	0.011573	1	0.89061	1	0.038692	1	0.76457	1
20q loss	0 (0%)	548	0.68932	1	0.95926	1	0.16012	1	0.8858	1	0.48026	1	0.89114	1	0.35183	1	0.26939	1	0.2454	1	0.6249	1	0.24834	1	1	1	0.32958	1	0.73682	1
21q loss	0 (0%)	418	0.2571	1	0.15671	1	0.24794	1	0.034588	1	0.60712	1	0.01346	1	0.28555	1	0.38666	1	0.46045	1	0.56346	1	0.4644	1	0.96584	1	0.029784	1	0.67219	1
22q loss	0 (0%)	182	4.3804e-05	0.0472	0.00023726	0.252	0.11547	1	0.00040443	0.428	0.00015563	0.167	0.0016562	1	0.039487	1	0.10113	1	0.080624	1	0.19052	1	0.0027861	1	0.38953	1	0.0032458	1	0.31751	1
Xq loss	0 (0%)	469	0.086219	1	0.33563	1	0.014696	1	0.026965	1	0.16824	1	0.13846	1	1	1	0.46578	1	0.29467	1	0.82155	1	0.97526	1	0.38371	1	0.57024	1	0.48309	1
