		Molecular subtypes	MRNA_CNMF		MRNA_CHIERARCHICAL		MIR_CNMF		MIR_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1p34.3)	0 (0%)	288	0.28519	1	0.13763	1	0.071972	1	0.20016	1	4.7527e-06	0.00445	0.15339	1	0.12133	1	0.7837	1	0.60208	1	0.1044	1	0.069358	1	0.092226	1	0.047893	1	0.53567	1
Amp Peak  2(1q21.3)	0 (0%)	213	0.1858	1	0.11218	1	0.53581	1	0.18765	1	2.9346e-11	2.84e-08	0.0001027	0.0938	0.06009	1	0.0099903	1	0.62753	1	0.27957	1	0.91555	1	0.97204	1	0.78448	1	0.97836	1
Amp Peak  3(1q42.2)	0 (0%)	257	0.020382	1	0.043502	1	0.87255	1	0.12823	1	5.5536e-09	5.31e-06	5.8886e-06	0.0055	0.27927	1	0.20673	1	0.61994	1	0.41838	1	0.18305	1	0.26977	1	0.25807	1	0.21879	1
Amp Peak  4(2p23.2)	0 (0%)	330	0.30202	1	0.16926	1	0.40928	1	0.050084	1	2.1875e-08	2.08e-05	0.004492	1	0.2232	1	0.65841	1	0.031553	1	0.75122	1	0.91142	1	0.11482	1	0.9605	1	0.63774	1
Amp Peak  5(2q31.2)	0 (0%)	319	0.047364	1	0.086451	1	0.15133	1	0.32485	1	1.9013e-10	1.83e-07	0.0027652	1	0.057514	1	0.50728	1	0.22903	1	0.52213	1	0.4562	1	0.66373	1	0.21844	1	0.085553	1
Amp Peak  6(3q26.2)	0 (0%)	96	0.0070511	1	0.057035	1	0.63748	1	0.095416	1	4.0093e-11	3.87e-08	0.083523	1	0.55374	1	0.55333	1	0.016628	1	0.046345	1	0.12268	1	0.43241	1	0.56208	1	0.65945	1
Amp Peak  7(4p16.3)	0 (0%)	414	0.9548	1	0.4729	1	0.044712	1	0.92727	1	0.0001028	0.0938	0.042062	1	0.24406	1	0.76876	1	0.7495	1	0.45544	1	0.6437	1	0.66442	1	0.67608	1	0.42174	1
Amp Peak  8(4q13.3)	0 (0%)	464	0.88726	1	0.97999	1	0.2452	1	0.93385	1	4.5911e-06	0.0043	0.11695	1	0.31225	1	0.14892	1	0.14795	1	0.93527	1	0.97634	1	0.10761	1	0.82891	1	0.47991	1
Amp Peak  9(5p15.33)	0 (0%)	270	0.66712	1	0.92826	1	0.8622	1	0.040392	1	2.2615e-07	0.000215	0.061365	1	0.98199	1	0.4769	1	0.17489	1	0.92737	1	0.013829	1	0.43615	1	0.067736	1	0.38166	1
Amp Peak 10(6p22.3)	0 (0%)	278	0.086057	1	0.042485	1	0.67026	1	0.41747	1	1.6854e-09	1.61e-06	0.12701	1	0.0709	1	0.052988	1	0.83343	1	0.070896	1	0.30352	1	0.43388	1	0.12391	1	0.29539	1
Amp Peak 11(7q36.3)	0 (0%)	265	0.067654	1	0.035878	1	0.51287	1	0.95282	1	7.0246e-06	0.00655	0.41153	1	0.068269	1	0.24191	1	0.96189	1	0.76385	1	0.1648	1	0.14332	1	0.022747	1	0.21057	1
Amp Peak 12(8p11.21)	0 (0%)	367	0.068767	1	0.13628	1	0.11711	1	0.26306	1	8.8309e-08	8.39e-05	0.003506	1	0.036499	1	0.26168	1	0.35177	1	0.21615	1	0.90478	1	0.67237	1	0.59857	1	0.69348	1
Amp Peak 13(8q24.21)	0 (0%)	122	3.9697e-07	0.000376	1.5723e-05	0.0146	0.25383	1	0.00078931	0.704	1.7577e-17	1.72e-14	0.0026451	1	0.9599	1	0.59521	1	4.5152e-07	0.000427	2.4637e-05	0.0228	0.14209	1	0.040558	1	0.083995	1	0.083616	1
Amp Peak 14(10p15.3)	0 (0%)	329	0.87711	1	0.37736	1	0.073199	1	0.12147	1	4.1528e-12	4.03e-09	2.8521e-05	0.0264	0.56203	1	0.40842	1	0.34409	1	0.30582	1	0.46509	1	0.94504	1	0.79793	1	0.65187	1
Amp Peak 15(10q22.3)	0 (0%)	394	0.78566	1	0.69335	1	0.65207	1	0.11616	1	0.35453	1	0.99317	1	0.52683	1	0.9776	1	0.074943	1	0.33248	1	0.11244	1	0.15069	1	0.68998	1	0.33593	1
Amp Peak 16(11q14.1)	0 (0%)	319	0.0064817	1	0.0049999	1	0.56336	1	0.21298	1	1.1906e-09	1.14e-06	0.021087	1	0.60018	1	0.22203	1	0.0037819	1	0.0040494	1	0.20461	1	0.82698	1	0.23264	1	0.89979	1
Amp Peak 17(12p13.33)	0 (0%)	251	0.028147	1	0.023934	1	0.16177	1	0.08021	1	1.0241e-10	9.86e-08	3.0438e-05	0.0281	0.31408	1	0.61446	1	0.012405	1	0.13745	1	0.31956	1	0.9209	1	0.6568	1	0.35729	1
Amp Peak 18(12p12.1)	0 (0%)	268	0.32495	1	0.14473	1	0.88945	1	0.14199	1	9.0547e-15	8.84e-12	5.7299e-06	0.00536	0.81857	1	0.49251	1	0.021381	1	0.13261	1	0.20164	1	0.69951	1	0.50396	1	0.58053	1
Amp Peak 19(12q15)	0 (0%)	359	0.0044953	1	0.0027565	1	0.85303	1	0.32525	1	1.4297e-08	1.36e-05	3.1575e-05	0.0291	0.20395	1	0.32802	1	0.0032364	1	0.00033957	0.307	0.66489	1	0.6198	1	0.7172	1	0.53986	1
Amp Peak 20(14q11.2)	0 (0%)	426	0.0072273	1	0.033396	1	0.37444	1	0.0045106	1	0.045837	1	0.22791	1	0.393	1	0.28794	1	0.25505	1	0.33311	1	0.2343	1	0.33494	1	0.26707	1	0.27863	1
Amp Peak 21(14q32.33)	0 (0%)	419	0.27132	1	0.049598	1	0.74162	1	0.28692	1	0.00015466	0.14	0.31792	1	1	1	0.67109	1	0.18485	1	0.57834	1	0.50815	1	0.7803	1	0.51279	1	0.58436	1
Amp Peak 22(15q26.3)	0 (0%)	413	0.090797	1	0.19582	1	0.82011	1	0.72512	1	8.6878e-10	8.34e-07	0.75745	1	0.97809	1	0.25265	1	0.15745	1	0.94533	1	0.11883	1	0.36343	1	0.18081	1	0.40422	1
Amp Peak 23(17q25.3)	0 (0%)	362	0.53106	1	0.84653	1	0.83099	1	0.12467	1	0.0025792	1	0.90414	1	0.093596	1	0.11207	1	0.016232	1	0.024064	1	0.4061	1	0.16901	1	0.33235	1	0.13449	1
Amp Peak 24(18q11.2)	0 (0%)	431	0.87634	1	0.69903	1	0.81921	1	0.614	1	1.8327e-06	0.00172	0.0093201	1	0.20545	1	0.45327	1	0.042716	1	0.10889	1	0.31304	1	0.82502	1	0.31701	1	0.46882	1
Amp Peak 25(19p13.12)	0 (0%)	264	0.0008114	0.722	3.2437e-06	0.00305	0.021202	1	0.064513	1	6.5967e-13	6.42e-10	1.4279e-06	0.00135	0.00066159	0.594	0.0037834	1	0.21537	1	0.26956	1	0.48203	1	0.59549	1	0.96113	1	0.65605	1
Amp Peak 26(19q12)	0 (0%)	255	0.064554	1	0.0013398	1	0.031597	1	0.54096	1	9.1092e-29	8.93e-26	2.194e-10	2.11e-07	0.080336	1	0.82035	1	0.5507	1	0.85952	1	0.33501	1	0.59597	1	0.73844	1	0.43835	1
Amp Peak 27(19q13.2)	0 (0%)	331	0.92182	1	0.73273	1	0.48052	1	0.75278	1	2.3798e-13	2.32e-10	7.3301e-05	0.0672	0.45652	1	0.38234	1	0.45755	1	0.98471	1	1	1	0.3794	1	0.66406	1	0.37393	1
Amp Peak 28(20p13)	0 (0%)	259	0.25693	1	0.15409	1	0.17352	1	0.056261	1	1.178e-11	1.14e-08	3.2509e-05	0.03	0.32141	1	0.97078	1	0.071585	1	0.6862	1	0.24165	1	0.89627	1	0.72297	1	0.29928	1
Amp Peak 29(20q11.21)	0 (0%)	237	0.005101	1	0.00046421	0.419	0.26114	1	0.012946	1	1.4322e-25	1.4e-22	4.0574e-12	3.94e-09	0.14036	1	0.039225	1	0.00013753	0.125	0.59878	1	0.5432	1	0.25099	1	0.96791	1	0.57291	1
Amp Peak 30(20q13.33)	0 (0%)	177	0.0096003	1	0.0037262	1	0.7387	1	0.36413	1	1.8239e-17	1.78e-14	8.5028e-08	8.09e-05	0.89923	1	0.56042	1	0.0080012	1	0.79319	1	0.4765	1	0.60408	1	0.68875	1	0.31859	1
Amp Peak 31(22q12.2)	0 (0%)	482	0.49083	1	0.48681	1	0.10514	1	0.016494	1	0.00072466	0.648	0.001446	1	1	1	0.057451	1	0.098624	1	0.195	1	0.10137	1	0.011408	1	0.048885	1	0.039466	1
Amp Peak 32(Xp11.23)	0 (0%)	406	0.94261	1	0.3063	1	0.28586	1	0.03835	1	3.287e-06	0.00309	8.7305e-05	0.0799	0.70289	1	0.2224	1	0.28613	1	0.2156	1	0.36494	1	0.87915	1	0.46716	1	0.72007	1
Amp Peak 33(Xq28)	0 (0%)	346	0.13651	1	0.38392	1	0.70232	1	0.46399	1	1.9282e-05	0.0179	0.11531	1	0.35856	1	0.7908	1	0.5486	1	0.4349	1	0.91696	1	0.011929	1	0.89127	1	0.82138	1
Del Peak  1(1p36.11)	0 (0%)	304	0.90668	1	0.69351	1	0.12546	1	0.60592	1	3.3244e-06	0.00312	0.046165	1	0.18884	1	0.41581	1	0.96084	1	0.80721	1	0.22128	1	0.14443	1	0.34491	1	0.16097	1
Del Peak  2(1q32.3)	0 (0%)	475	0.082276	1	0.23709	1	0.46655	1	0.45884	1	3.4574e-07	0.000327	0.2267	1	0.78069	1	0.10493	1	0.11541	1	0.33037	1	0.897	1	0.56961	1	0.95847	1	0.85714	1
Del Peak  3(2p25.3)	0 (0%)	452	0.98178	1	0.92813	1	0.21298	1	0.52397	1	0.28615	1	0.73947	1	0.14867	1	0.11212	1	0.050061	1	0.73405	1	0.90478	1	0.50594	1	0.93266	1	0.55261	1
Del Peak  4(2q22.1)	0 (0%)	436	0.11454	1	0.29925	1	0.41554	1	0.0073213	1	0.038288	1	0.36055	1	0.28134	1	0.70968	1	0.98287	1	0.35733	1	0.56696	1	0.57438	1	0.56518	1	0.15393	1
Del Peak  5(2q37.3)	0 (0%)	396	0.015975	1	0.063316	1	0.5261	1	9.0251e-05	0.0825	3.3292e-05	0.0307	0.12355	1	0.72491	1	0.89364	1	0.01988	1	0.028864	1	0.01865	1	0.012482	1	0.072817	1	0.02752	1
Del Peak  6(3p26.2)	0 (0%)	359	0.1456	1	0.03524	1	0.015236	1	0.10778	1	7.9488e-05	0.0728	0.00022594	0.205	0.96999	1	0.094852	1	0.0031158	1	0.67425	1	0.62801	1	0.61119	1	0.95898	1	0.024851	1
Del Peak  7(4q22.1)	0 (0%)	186	0.050228	1	0.31562	1	0.90732	1	0.25336	1	0.045759	1	0.58009	1	0.059333	1	0.0090796	1	0.10929	1	0.42446	1	0.19509	1	0.0073341	1	0.02275	1	0.11901	1
Del Peak  8(4q34.3)	0 (0%)	157	0.021525	1	0.023864	1	0.010815	1	0.36837	1	0.28284	1	0.69382	1	0.4294	1	0.21123	1	0.08514	1	0.030251	1	0.33715	1	0.17663	1	0.11655	1	0.25189	1
Del Peak  9(5q11.2)	0 (0%)	228	0.76991	1	0.59311	1	0.19791	1	0.26373	1	2.6912e-07	0.000255	0.00052806	0.476	0.73119	1	0.85153	1	0.1817	1	0.12795	1	0.034107	1	0.00055831	0.503	0.015281	1	0.011863	1
Del Peak 10(5q13.2)	0 (0%)	163	0.69869	1	0.49876	1	0.84689	1	0.4775	1	3.8927e-11	3.76e-08	0.12243	1	0.76159	1	0.82409	1	0.3536	1	0.0030253	1	0.12125	1	0.0088524	1	0.10307	1	0.068307	1
Del Peak 11(6q27)	0 (0%)	189	0.13998	1	0.0057951	1	0.55514	1	0.56628	1	8.4624e-09	8.08e-06	2.3467e-05	0.0218	0.42773	1	0.91712	1	2.6855e-05	0.0249	0.24953	1	0.4568	1	0.94464	1	0.31139	1	0.092705	1
Del Peak 12(7p22.1)	0 (0%)	323	0.26027	1	0.69394	1	0.61033	1	0.82723	1	1.4021e-13	1.37e-10	0.8023	1	0.80093	1	0.78182	1	0.28221	1	0.10438	1	0.32752	1	0.56375	1	0.66773	1	0.56365	1
Del Peak 13(8p23.3)	0 (0%)	188	0.10086	1	0.26047	1	0.78833	1	0.003137	1	5.6331e-11	5.43e-08	0.14967	1	0.87324	1	0.61599	1	0.89476	1	0.60024	1	0.23462	1	0.15946	1	0.18727	1	0.40225	1
Del Peak 14(8p21.2)	0 (0%)	171	0.065758	1	0.24788	1	0.11591	1	0.0022215	1	1.3533e-08	1.29e-05	0.20187	1	0.79353	1	0.84768	1	0.36021	1	0.25	1	0.54086	1	0.48426	1	0.90146	1	0.97638	1
Del Peak 15(9p24.3)	0 (0%)	315	0.00090475	0.804	0.0058255	1	0.67942	1	0.01121	1	0.012307	1	6.6032e-05	0.0606	0.45165	1	0.59747	1	0.072551	1	0.074551	1	0.087932	1	0.13694	1	0.058961	1	0.13266	1
Del Peak 16(9q34.13)	0 (0%)	232	0.016563	1	0.019619	1	0.91485	1	0.015657	1	6.6278e-07	0.000626	0.057831	1	0.34379	1	0.37086	1	0.27207	1	1	1	0.03707	1	0.099525	1	0.10195	1	0.057026	1
Del Peak 17(10p15.3)	0 (0%)	449	0.093979	1	0.10327	1	0.036364	1	0.042599	1	0.10053	1	0.36001	1	0.28282	1	0.068751	1	0.014455	1	0.060723	1	0.25458	1	0.33814	1	0.11299	1	0.28842	1
Del Peak 18(10q23.31)	0 (0%)	350	0.22245	1	0.0025812	1	0.00012391	0.113	0.71858	1	0.00066198	0.594	0.0011957	1	0.036002	1	0.012118	1	0.96084	1	0.50205	1	0.073452	1	0.38278	1	0.083633	1	0.16491	1
Del Peak 19(10q26.3)	0 (0%)	381	0.0062108	1	0.00063645	0.572	0.1535	1	0.26008	1	1.5273e-05	0.0142	0.15526	1	0.0924	1	0.01349	1	0.060288	1	0.12159	1	0.016338	1	0.22053	1	0.051276	1	0.23322	1
Del Peak 20(11p15.5)	0 (0%)	231	0.07044	1	0.27925	1	0.76894	1	0.24191	1	1.8916e-11	1.83e-08	0.024875	1	0.96331	1	0.59561	1	0.71737	1	0.272	1	0.12946	1	0.023987	1	0.15703	1	0.28366	1
Del Peak 21(11q25)	0 (0%)	374	0.80036	1	0.32102	1	0.26979	1	0.46151	1	0.052942	1	0.55423	1	0.31973	1	0.17519	1	0.93094	1	0.87676	1	0.5974	1	0.13818	1	0.58935	1	0.2122	1
Del Peak 22(12q24.33)	0 (0%)	353	0.00069507	0.623	0.00058047	0.522	0.21185	1	0.0040363	1	2.1767e-09	2.08e-06	0.015392	1	0.3814	1	0.50179	1	0.069961	1	0.0031356	1	0.017165	1	0.0056917	1	0.021087	1	0.009768	1
Del Peak 23(13q14.2)	0 (0%)	215	0.00355	1	0.025242	1	0.61181	1	0.88534	1	6.6348e-07	0.000626	4.3185e-05	0.0397	0.0014027	1	0.00080734	0.719	0.09885	1	0.25006	1	0.37539	1	0.89057	1	0.45142	1	0.65689	1
Del Peak 24(14q23.3)	0 (0%)	272	0.029491	1	0.11591	1	0.59583	1	0.81462	1	6.1231e-05	0.0563	0.53722	1	0.18481	1	0.24683	1	0.85595	1	0.20068	1	0.8034	1	0.66168	1	0.58532	1	0.20873	1
Del Peak 25(15q15.1)	0 (0%)	212	0.028672	1	0.019469	1	0.011059	1	0.0061803	1	2.1189e-11	2.05e-08	7.2118e-06	0.00672	0.12115	1	0.045597	1	0.01805	1	0.76761	1	0.46434	1	0.67584	1	0.24277	1	0.21388	1
Del Peak 26(16p13.3)	0 (0%)	267	0.46676	1	0.069184	1	0.12356	1	0.18301	1	0.075948	1	0.4141	1	0.92114	1	0.23886	1	0.50761	1	0.78608	1	0.20404	1	0.85155	1	0.096862	1	0.81256	1
Del Peak 27(16q22.1)	0 (0%)	118	0.49177	1	0.89434	1	0.03763	1	0.37173	1	0.00025699	0.233	0.57634	1	0.55204	1	0.35943	1	0.30349	1	0.30528	1	0.41225	1	0.12574	1	0.074694	1	0.19003	1
Del Peak 28(16q23.1)	0 (0%)	127	0.12137	1	0.22782	1	0.12174	1	0.17059	1	0.00012924	0.117	0.60367	1	0.6021	1	0.92483	1	0.39459	1	0.44854	1	0.08924	1	0.039284	1	0.066765	1	0.056936	1
Del Peak 29(17p12)	0 (0%)	89	0.18115	1	0.021349	1	0.94315	1	0.86158	1	0.80236	1	0.28915	1	0.93821	1	0.36217	1	0.1874	1	0.51545	1	0.61003	1	0.62084	1	0.55078	1	0.8327	1
Del Peak 30(17q11.2)	0 (0%)	104	0.95058	1	0.043437	1	0.76496	1	0.076609	1	0.00071136	0.637	0.0049803	1	0.76734	1	0.066573	1	0.37712	1	0.57142	1	0.20232	1	0.56529	1	0.039787	1	0.42715	1
Del Peak 31(18q23)	0 (0%)	197	1	1	0.97975	1	0.088359	1	0.17808	1	0.0020758	1	0.4391	1	0.22796	1	0.275	1	0.21987	1	0.3983	1	0.68926	1	0.68941	1	0.12254	1	0.79313	1
Del Peak 32(19p13.3)	0 (0%)	68	0.38567	1	0.029362	1	0.85169	1	0.54048	1	0.0023957	1	0.012682	1	0.59172	1	0.22869	1	0.33265	1	0.015723	1	0.47594	1	0.85014	1	0.4401	1	0.89881	1
Del Peak 33(19q13.33)	0 (0%)	275	0.0018817	1	0.00076484	0.683	0.022217	1	0.15948	1	0.081044	1	0.005848	1	0.034225	1	0.21418	1	0.0078351	1	0.084428	1	0.25918	1	0.15122	1	0.2444	1	0.4317	1
Del Peak 34(19q13.43)	0 (0%)	290	0.043249	1	0.0079892	1	0.15472	1	0.050803	1	0.0046372	1	0.00010774	0.0981	0.17832	1	0.27795	1	0.5553	1	0.15411	1	0.52674	1	0.45469	1	0.42687	1	0.61885	1
Del Peak 35(21q22.3)	0 (0%)	348	0.43454	1	0.53286	1	0.53531	1	0.5781	1	0.75474	1	0.266	1	0.57876	1	0.62599	1	0.18866	1	0.27222	1	0.73978	1	0.65237	1	0.18512	1	0.41057	1
Del Peak 36(22q13.32)	0 (0%)	76	0.1091	1	0.047806	1	0.043619	1	0.025755	1	0.014892	1	0.066656	1	0.071142	1	0.34908	1	0.068042	1	0.17968	1	0.023586	1	0.29558	1	0.020204	1	0.47952	1
Del Peak 37(Xp21.1)	0 (0%)	206	0.27623	1	0.88103	1	0.12023	1	0.45224	1	0.081775	1	0.028462	1	0.32266	1	0.043386	1	0.90769	1	0.40881	1	0.93591	1	0.42976	1	0.70161	1	0.47574	1
