
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PAAD-TP/4468264/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/PAAD-TP/4434820/PAAD-TP.clin.merged.picked.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=PAAD-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=PAAD-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/PAAD-TP/4434820/PAAD-TP.clin.merged.picked.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PAAD-TP/4468264/transformed.cor.cli.txt"

nPatients in clinical file=53, in cluster file=65, common to both=52
[1] 44 52
[1] "AMP PEAK  1(1P34.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                            3                            49 
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                            3                            49 
[1] "AMP PEAK  2(1P12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE 
                          6                          46 
  AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE 
                          6                          46 
[1] "AMP PEAK  3(7Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(7Q22.1) MUTATED AMP PEAK  3(7Q22.1) WILD-TYPE 
                           13                            39 
  AMP PEAK  3(7Q22.1) MUTATED AMP PEAK  3(7Q22.1) WILD-TYPE 
                           13                            39 
[1] "AMP PEAK  4(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(8Q24.21) MUTATED AMP PEAK  4(8Q24.21) WILD-TYPE 
                            19                             33 
  AMP PEAK  4(8Q24.21) MUTATED AMP PEAK  4(8Q24.21) WILD-TYPE 
                            19                             33 
[1] "AMP PEAK  5(9P13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(9P13.3) MUTATED AMP PEAK  5(9P13.3) WILD-TYPE 
                            5                            47 
  AMP PEAK  5(9P13.3) MUTATED AMP PEAK  5(9P13.3) WILD-TYPE 
                            5                            47 
[1] "AMP PEAK  6(11P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(11P11.2) MUTATED AMP PEAK  6(11P11.2) WILD-TYPE 
                             4                             48 
  AMP PEAK  6(11P11.2) MUTATED AMP PEAK  6(11P11.2) WILD-TYPE 
                             4                             48 
[1] "AMP PEAK  7(12P13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(12P13.33) MUTATED AMP PEAK  7(12P13.33) WILD-TYPE 
                              7                              45 
  AMP PEAK  7(12P13.33) MUTATED AMP PEAK  7(12P13.33) WILD-TYPE 
                              7                              45 
[1] "AMP PEAK  8(12P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(12P11.21) MUTATED AMP PEAK  8(12P11.21) WILD-TYPE 
                             10                              42 
  AMP PEAK  8(12P11.21) MUTATED AMP PEAK  8(12P11.21) WILD-TYPE 
                             10                              42 
[1] "AMP PEAK  9(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE 
                           6                           46 
  AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE 
                           6                           46 
[1] "AMP PEAK 10(17P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(17P11.2) MUTATED AMP PEAK 10(17P11.2) WILD-TYPE 
                             3                             49 
  AMP PEAK 10(17P11.2) MUTATED AMP PEAK 10(17P11.2) WILD-TYPE 
                             3                             49 
[1] "AMP PEAK 11(17Q21.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(17Q21.33) MUTATED AMP PEAK 11(17Q21.33) WILD-TYPE 
                              7                              45 
  AMP PEAK 11(17Q21.33) MUTATED AMP PEAK 11(17Q21.33) WILD-TYPE 
                              7                              45 
[1] "AMP PEAK 12(18Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(18Q11.2) MUTATED AMP PEAK 12(18Q11.2) WILD-TYPE 
                            14                             38 
  AMP PEAK 12(18Q11.2) MUTATED AMP PEAK 12(18Q11.2) WILD-TYPE 
                            14                             38 
[1] "AMP PEAK 13(19Q13.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(19Q13.13) MUTATED AMP PEAK 13(19Q13.13) WILD-TYPE 
                             10                              42 
  AMP PEAK 13(19Q13.13) MUTATED AMP PEAK 13(19Q13.13) WILD-TYPE 
                             10                              42 
[1] "AMP PEAK 14(20Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(20Q13.2) MUTATED AMP PEAK 14(20Q13.2) WILD-TYPE 
                            13                             39 
  AMP PEAK 14(20Q13.2) MUTATED AMP PEAK 14(20Q13.2) WILD-TYPE 
                            13                             39 
[1] "AMP PEAK 15(XP22.11) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(XP22.11) MUTATED AMP PEAK 15(XP22.11) WILD-TYPE 
                             4                             48 
  AMP PEAK 15(XP22.11) MUTATED AMP PEAK 15(XP22.11) WILD-TYPE 
                             4                             48 
[1] "AMP PEAK 16(XQ27.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(XQ27.1) MUTATED AMP PEAK 16(XQ27.1) WILD-TYPE 
                            6                            46 
  AMP PEAK 16(XQ27.1) MUTATED AMP PEAK 16(XQ27.1) WILD-TYPE 
                            6                            46 
[1] "DEL PEAK  1(1P36.22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE 
                             9                             43 
  DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE 
                             9                             43 
[1] "DEL PEAK  2(1P36.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                            12                             40 
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                            12                             40 
[1] "DEL PEAK  3(1P21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE 
                            9                            43 
  DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE 
                            9                            43 
[1] "DEL PEAK  4(5Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(5Q14.2) MUTATED DEL PEAK  4(5Q14.2) WILD-TYPE 
                            9                            43 
  DEL PEAK  4(5Q14.2) MUTATED DEL PEAK  4(5Q14.2) WILD-TYPE 
                            9                            43 
[1] "DEL PEAK  5(5Q15) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(5Q15) MUTATED DEL PEAK  5(5Q15) WILD-TYPE 
                         10                          42 
  DEL PEAK  5(5Q15) MUTATED DEL PEAK  5(5Q15) WILD-TYPE 
                         10                          42 
[1] "DEL PEAK  6(6P25.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(6P25.2) MUTATED DEL PEAK  6(6P25.2) WILD-TYPE 
                           19                            33 
  DEL PEAK  6(6P25.2) MUTATED DEL PEAK  6(6P25.2) WILD-TYPE 
                           19                            33 
[1] "DEL PEAK  7(6P22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(6P22.3) MUTATED DEL PEAK  7(6P22.3) WILD-TYPE 
                           19                            33 
  DEL PEAK  7(6P22.3) MUTATED DEL PEAK  7(6P22.3) WILD-TYPE 
                           19                            33 
[1] "DEL PEAK  8(6Q22.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(6Q22.33) MUTATED DEL PEAK  8(6Q22.33) WILD-TYPE 
                            24                             28 
  DEL PEAK  8(6Q22.33) MUTATED DEL PEAK  8(6Q22.33) WILD-TYPE 
                            24                             28 
[1] "DEL PEAK  9(7Q36.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(7Q36.1) MUTATED DEL PEAK  9(7Q36.1) WILD-TYPE 
                            5                            47 
  DEL PEAK  9(7Q36.1) MUTATED DEL PEAK  9(7Q36.1) WILD-TYPE 
                            5                            47 
[1] "DEL PEAK 10(8P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(8P21.3) MUTATED DEL PEAK 10(8P21.3) WILD-TYPE 
                           15                            37 
  DEL PEAK 10(8P21.3) MUTATED DEL PEAK 10(8P21.3) WILD-TYPE 
                           15                            37 
[1] "DEL PEAK 11(8Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(8Q12.1) MUTATED DEL PEAK 11(8Q12.1) WILD-TYPE 
                            4                            48 
  DEL PEAK 11(8Q12.1) MUTATED DEL PEAK 11(8Q12.1) WILD-TYPE 
                            4                            48 
[1] "DEL PEAK 12(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE 
                           29                            23 
  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE 
                           29                            23 
[1] "DEL PEAK 13(10Q23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(10Q23.2) MUTATED DEL PEAK 13(10Q23.2) WILD-TYPE 
                            10                             42 
  DEL PEAK 13(10Q23.2) MUTATED DEL PEAK 13(10Q23.2) WILD-TYPE 
                            10                             42 
[1] "DEL PEAK 14(11P15.4) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(11P15.4) MUTATED DEL PEAK 14(11P15.4) WILD-TYPE 
                            10                             42 
  DEL PEAK 14(11P15.4) MUTATED DEL PEAK 14(11P15.4) WILD-TYPE 
                            10                             42 
[1] "DEL PEAK 15(12P12.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(12P12.3) MUTATED DEL PEAK 15(12P12.3) WILD-TYPE 
                             8                             44 
  DEL PEAK 15(12P12.3) MUTATED DEL PEAK 15(12P12.3) WILD-TYPE 
                             8                             44 
[1] "DEL PEAK 16(12Q12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(12Q12) MUTATED DEL PEAK 16(12Q12) WILD-TYPE 
                           7                           45 
  DEL PEAK 16(12Q12) MUTATED DEL PEAK 16(12Q12) WILD-TYPE 
                           7                           45 
[1] "DEL PEAK 17(12Q24.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(12Q24.31) MUTATED DEL PEAK 17(12Q24.31) WILD-TYPE 
                             12                              40 
  DEL PEAK 17(12Q24.31) MUTATED DEL PEAK 17(12Q24.31) WILD-TYPE 
                             12                              40 
[1] "DEL PEAK 18(15Q15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE 
                             9                             43 
  DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE 
                             9                             43 
[1] "DEL PEAK 19(17P11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(17P11.2) MUTATED DEL PEAK 19(17P11.2) WILD-TYPE 
                            19                             33 
  DEL PEAK 19(17P11.2) MUTATED DEL PEAK 19(17P11.2) WILD-TYPE 
                            19                             33 
[1] "DEL PEAK 20(17Q22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(17Q22) MUTATED DEL PEAK 20(17Q22) WILD-TYPE 
                          15                           37 
  DEL PEAK 20(17Q22) MUTATED DEL PEAK 20(17Q22) WILD-TYPE 
                          15                           37 
[1] "DEL PEAK 21(18P11.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(18P11.32) MUTATED DEL PEAK 21(18P11.32) WILD-TYPE 
                             17                              35 
  DEL PEAK 21(18P11.32) MUTATED DEL PEAK 21(18P11.32) WILD-TYPE 
                             17                              35 
[1] "DEL PEAK 22(18Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(18Q12.1) MUTATED DEL PEAK 22(18Q12.1) WILD-TYPE 
                            27                             25 
  DEL PEAK 22(18Q12.1) MUTATED DEL PEAK 22(18Q12.1) WILD-TYPE 
                            27                             25 
[1] "DEL PEAK 23(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE 
                            33                             19 
  DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE 
                            33                             19 
[1] "DEL PEAK 24(19Q13.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(19Q13.33) MUTATED DEL PEAK 24(19Q13.33) WILD-TYPE 
                              5                              47 
  DEL PEAK 24(19Q13.33) MUTATED DEL PEAK 24(19Q13.33) WILD-TYPE 
                              5                              47 
[1] "DEL PEAK 25(21Q22.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(21Q22.11) MUTATED DEL PEAK 25(21Q22.11) WILD-TYPE 
                             16                              36 
  DEL PEAK 25(21Q22.11) MUTATED DEL PEAK 25(21Q22.11) WILD-TYPE 
                             16                              36 
[1] "DEL PEAK 26(21Q22.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(21Q22.11) MUTATED DEL PEAK 26(21Q22.11) WILD-TYPE 
                             16                              36 
  DEL PEAK 26(21Q22.11) MUTATED DEL PEAK 26(21Q22.11) WILD-TYPE 
                             16                              36 
[1] "DEL PEAK 27(22Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE 
                             12                              40 
  DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE 
                             12                              40 
[1] "DEL PEAK 28(XQ21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(XQ21.1) MUTATED DEL PEAK 28(XQ21.1) WILD-TYPE 
                            6                            46 
  DEL PEAK 28(XQ21.1) MUTATED DEL PEAK 28(XQ21.1) WILD-TYPE 
                            6                            46 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "RADIATIONTHERAPY"                      
[14] "HISTOLOGICALTYPE"                      
[15] "RADIATIONS.RADIATION.REGIMENINDICATION"
[16] "NUMBERPACKYEARSSMOKED"                 
[17] "YEAROFTOBACCOSMOKINGONSET"             
[18] "COMPLETENESS.OF.RESECTION"             
[19] "NUMBER.OF.LYMPH.NODES"                 
[20] "BATCHNUMBER"                           

Input Data has 20 rows and 52 columns.

[1] "Batch" "20"   
[1] "Last Follow UP"
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
          NA          303          360           NA          153          158 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
           4            1          392          232          239           28 
TCGA-HZ-7919 TCGA-HZ-7920 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
          20           NA            4            8          369          366 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
           8           19           30           21           NA           28 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8637 TCGA-HZ-8638 TCGA-HZ-A49G 
          15            3            5           NA           90           23 
TCGA-HZ-A49H TCGA-HZ-A49I TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
          31           NA          182           46          347           NA 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
          NA           NA           NA           NA          476          851 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
          NA           NA           NA           NA           NA          488 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
          NA           NA           17          521 
Variable 1:'AGE':	nDistinctValues=32,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=17,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=32,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=6,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 14:'HISTOLOGICAL.TYPE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 16:'NUMBERPACKYEARSSMOKED':	nDistinctValues=10,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 17:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=10,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'COMPLETENESS.OF.RESECTION':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 19:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=12,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'BATCH.NUMBER':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                       "NEOPLASM.DISEASESTAGE"    
 [3] "PATHOLOGY.T.STAGE"         "PATHOLOGY.N.STAGE"        
 [5] "PATHOLOGY.M.STAGE"         "GENDER"                   
 [7] "HISTOLOGICAL.TYPE"         "NUMBERPACKYEARSSMOKED"    
 [9] "YEAROFTOBACCOSMOKINGONSET" "COMPLETENESS.OF.RESECTION"
[11] "NUMBER.OF.LYMPH.NODES"    
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 52 columns, 1 survival variables, and 11 non-survival variables.
AGE, nv=32, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=6, binary=FALSE, numeric=FALSE
PATHOLOGY.T.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
T1 T2 T3 T4 
 2  3 45  2 
[1] "table(vv)"
vv
T1+T2 T3+T4 
    5    47 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
T1 T2 T3 T4 
 2  3 45  2 

$ClinVariableType
[1] "binary"

$Class0_nSamples
[1] 5

$Class1_nSamples
[1] 47

$Class0_label
[1] "T1+T2"

$Class1_label
[1] "T3+T4"


T1+T2 T3+T4 
    5    47 
PATHOLOGY.N.STAGE, nv=2, binary=FALSE, numeric=TRUE
PATHOLOGY.M.STAGE, nv=3, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=3, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=10, binary=FALSE, numeric=TRUE
YEAROFTOBACCOSMOKINGONSET, nv=10, binary=FALSE, numeric=TRUE
COMPLETENESS.OF.RESECTION, nv=3, binary=FALSE, numeric=FALSE
NUMBER.OF.LYMPH.NODES, nv=12, binary=FALSE, numeric=TRUE

Clustering(1) Variable = AMP PEAK  1(1P34.2) MUTATION ANALYSIS
D1V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  1(1P34.2) MUTATED    2  0
  AMP PEAK  1(1P34.2) WILD-TYPE 30 17
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                            2                            47 
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                            0                            17 
$`AMP PEAK  1(1P34.2) MUTATED`
TCGA-HZ-7289 TCGA-HZ-7925 
        7.86        12.03 

$`AMP PEAK  1(1P34.2) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7919 
        0.13         0.03        12.89         7.63         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.13         0.26        12.13         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 
        0.69         3.91         0.92         0.49         0.10         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.96         0.76         1.02         5.98         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.86        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.58        43.79        15.78        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       16.04         3.85        15.95         0.56        17.13 

  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                         7.86                          0.03 
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                        12.03                         49.38 
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                        9.945                         4.770 
[1] "7.9 - 12.0 (9.9)" "0.0 - 49.4 (4.8)"
                   TCGA-F2-6879                    TCGA-F2-6880 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-8127 
"AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-8127 
"AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-8127 
"AMP PEAK  1(1P34.2) WILD-TYPE" 
[1] "Remove cluster labels:"      "AMP PEAK  1(1P34.2) MUTATED"
clus
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                            2                            47 
                   TCGA-F2-6879                    TCGA-F2-6880 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7926 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-8127 
"AMP PEAK  1(1P34.2) WILD-TYPE" 
D1V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  AMP PEAK  1(1P34.2) MUTATED          0        0         0         3         0
  AMP PEAK  1(1P34.2) WILD-TYPE        2        2         6        35         2
                               vv
clus                            STAGE IV
  AMP PEAK  1(1P34.2) MUTATED          0
  AMP PEAK  1(1P34.2) WILD-TYPE        2
D1V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  AMP PEAK  1(1P34.2) MUTATED       0     3
  AMP PEAK  1(1P34.2) WILD-TYPE     5    44
D1V4, multiclass
       clus
vv      AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  T1+T2                           0                             5
  T3+T4                           3                            44
D1V5, binary
                               cls
clus                             0  1
  AMP PEAK  1(1P34.2) MUTATED    0  3
  AMP PEAK  1(1P34.2) WILD-TYPE 12 37
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P34.2) MUTATED      0    3
  AMP PEAK  1(1P34.2) WILD-TYPE   12   37
   clus
vv  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  0                           0                            12
  1                           3                            37
                               vv
clus                            M0 M1 MX
  AMP PEAK  1(1P34.2) MUTATED    0  0  3
  AMP PEAK  1(1P34.2) WILD-TYPE 27  2 20
D1V6, multiclass
    clus
vv   AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  M0                           0                            27
  M1                           0                             2
  MX                           3                            20
D1V7, binary
                               cls
clus                             0  1
  AMP PEAK  1(1P34.2) MUTATED    1  2
  AMP PEAK  1(1P34.2) WILD-TYPE 27 22
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P34.2) MUTATED      1    2
  AMP PEAK  1(1P34.2) WILD-TYPE   27   22
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  FEMALE                           1                            27
  MALE                             2                            22
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  1(1P34.2) MUTATED                                     2
  AMP PEAK  1(1P34.2) WILD-TYPE                                  44
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  1(1P34.2) MUTATED                                       1
  AMP PEAK  1(1P34.2) WILD-TYPE                                     3
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  1(1P34.2) MUTATED                                                  0
  AMP PEAK  1(1P34.2) WILD-TYPE                                                1
D1V8, multiclass
                                                  clus
vv                                                 AMP PEAK  1(1P34.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        2
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 AMP PEAK  1(1P34.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         44
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D1V9, continuous
D1V10, continuous
                               vv
clus                            R0 R1 RX
  AMP PEAK  1(1P34.2) MUTATED    2  0  1
  AMP PEAK  1(1P34.2) WILD-TYPE 26 20  1
D1V11, multiclass
    clus
vv   AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  R0                           2                            26
  R1                           0                            20
  RX                           1                             1
D1V12, continuous

Clustering(2) Variable = AMP PEAK  2(1P12) MUTATION ANALYSIS
D2V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  2(1P12) MUTATED    2  3
  AMP PEAK  2(1P12) WILD-TYPE 30 14
  AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE 
                          5                          44 
  AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE 
                          3                          14 
$`AMP PEAK  2(1P12) MUTATED`
TCGA-HZ-7925 TCGA-HZ-8636 TCGA-IB-7645 TCGA-IB-7889 TCGA-IB-7893 
       12.03         0.16        49.38        15.78         3.85 

$`AMP PEAK  2(1P12) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
        0.13         0.03        12.89         7.63         7.86         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 
        0.66         0.13         0.26        12.13         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.99         0.69         3.91         0.92         0.49         0.10 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.96         0.76         1.02         5.98         1.51        11.41 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
        4.77        21.86        15.35        19.82        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 
        4.04         3.58        43.79        19.66        16.04        15.95 
TCGA-IB-8126 TCGA-IB-8127 
        0.56        17.13 

  AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE 
                       0.16                        0.03 
  AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE 
                      49.38                       43.79 
  AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE 
                      12.03                        4.90 
[1] "0.2 - 49.4 (12.0)" "0.0 - 43.8 (4.9)" 
                 TCGA-F2-6879                  TCGA-F2-6880 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-F2-7273                  TCGA-F2-7276 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-F2-A44G                  TCGA-F2-A44H 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-FB-A4P5                  TCGA-FB-A545 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-H6-8124                  TCGA-H6-A45N 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7289                  TCGA-HZ-7918 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7919                  TCGA-HZ-7922 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7923                  TCGA-HZ-7924 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7925                  TCGA-HZ-7926 
  "AMP PEAK  2(1P12) MUTATED" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8001                  TCGA-HZ-8002 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8003                  TCGA-HZ-8005 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8315                  TCGA-HZ-8317 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8519                  TCGA-HZ-8636 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-HZ-8638                  TCGA-HZ-A49G 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-A49H                  TCGA-HZ-A4BH 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-A4BK                  TCGA-IB-7644 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7645                  TCGA-IB-7646 
  "AMP PEAK  2(1P12) MUTATED" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7647                  TCGA-IB-7649 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7651                  TCGA-IB-7652 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7885                  TCGA-IB-7886 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7887                  TCGA-IB-7888 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7889                  TCGA-IB-7890 
  "AMP PEAK  2(1P12) MUTATED" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7891                  TCGA-IB-7893 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-IB-7897                  TCGA-IB-8126 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-8127 
"AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-F2-6879                  TCGA-F2-6880 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-F2-7273                  TCGA-F2-7276 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-F2-A44G                  TCGA-F2-A44H 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-FB-A4P5                  TCGA-FB-A545 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-H6-8124                  TCGA-H6-A45N 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7289                  TCGA-HZ-7918 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7919                  TCGA-HZ-7922 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7923                  TCGA-HZ-7924 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7925                  TCGA-HZ-7926 
  "AMP PEAK  2(1P12) MUTATED" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8001                  TCGA-HZ-8002 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8003                  TCGA-HZ-8005 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8315                  TCGA-HZ-8317 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8519                  TCGA-HZ-8636 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-HZ-8638                  TCGA-HZ-A49G 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-A49H                  TCGA-HZ-A4BH 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-A4BK                  TCGA-IB-7644 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7645                  TCGA-IB-7646 
  "AMP PEAK  2(1P12) MUTATED" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7647                  TCGA-IB-7649 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7651                  TCGA-IB-7652 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7885                  TCGA-IB-7886 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7887                  TCGA-IB-7888 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7889                  TCGA-IB-7890 
  "AMP PEAK  2(1P12) MUTATED" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7891                  TCGA-IB-7893 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-IB-7897                  TCGA-IB-8126 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-8127 
"AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-F2-6879                  TCGA-F2-6880 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-F2-7273                  TCGA-F2-7276 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-F2-A44G                  TCGA-F2-A44H 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-FB-A4P5                  TCGA-FB-A545 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-H6-8124                  TCGA-H6-A45N 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7289                  TCGA-HZ-7918 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7919                  TCGA-HZ-7922 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7923                  TCGA-HZ-7924 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7925                  TCGA-HZ-7926 
  "AMP PEAK  2(1P12) MUTATED" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8001                  TCGA-HZ-8002 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8003                  TCGA-HZ-8005 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8315                  TCGA-HZ-8317 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8519                  TCGA-HZ-8636 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-HZ-8638                  TCGA-HZ-A49G 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-A49H                  TCGA-HZ-A4BH 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-A4BK                  TCGA-IB-7644 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7645                  TCGA-IB-7646 
  "AMP PEAK  2(1P12) MUTATED" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7647                  TCGA-IB-7649 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7651                  TCGA-IB-7652 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7885                  TCGA-IB-7886 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7887                  TCGA-IB-7888 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7889                  TCGA-IB-7890 
  "AMP PEAK  2(1P12) MUTATED" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7891                  TCGA-IB-7893 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-IB-7897                  TCGA-IB-8126 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-8127 
"AMP PEAK  2(1P12) WILD-TYPE" 
[1] "hr=" "1.5"
D2V2, continuous
                             vv
clus                          STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  AMP PEAK  2(1P12) MUTATED          0        0         1         4         0
  AMP PEAK  2(1P12) WILD-TYPE        2        2         5        34         2
                             vv
clus                          STAGE IV
  AMP PEAK  2(1P12) MUTATED          1
  AMP PEAK  2(1P12) WILD-TYPE        1
D2V3, multiclass
                             vv
clus                          T1+T2 T3+T4
  AMP PEAK  2(1P12) MUTATED       0     6
  AMP PEAK  2(1P12) WILD-TYPE     5    41
D2V4, multiclass
       clus
vv      AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  T1+T2                         0                           5
  T3+T4                         6                          41
D2V5, binary
                             cls
clus                           0  1
  AMP PEAK  2(1P12) MUTATED    2  4
  AMP PEAK  2(1P12) WILD-TYPE 10 36
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1P12) MUTATED      2    4
  AMP PEAK  2(1P12) WILD-TYPE   10   36
   clus
vv  AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  0                         2                          10
  1                         4                          36
                             vv
clus                          M0 M1 MX
  AMP PEAK  2(1P12) MUTATED    3  1  2
  AMP PEAK  2(1P12) WILD-TYPE 24  1 21
D2V6, multiclass
    clus
vv   AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  M0                         3                          24
  M1                         1                           1
  MX                         2                          21
D2V7, binary
                             cls
clus                           0  1
  AMP PEAK  2(1P12) MUTATED    4  2
  AMP PEAK  2(1P12) WILD-TYPE 24 22
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1P12) MUTATED      4    2
  AMP PEAK  2(1P12) WILD-TYPE   24   22
        clus
vv       AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  FEMALE                         4                          24
  MALE                           2                          22
                             vv
clus                          PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  2(1P12) MUTATED                                     6
  AMP PEAK  2(1P12) WILD-TYPE                                  40
                             vv
clus                          PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  2(1P12) MUTATED                                       0
  AMP PEAK  2(1P12) WILD-TYPE                                     4
                             vv
clus                          PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  2(1P12) MUTATED                                                  0
  AMP PEAK  2(1P12) WILD-TYPE                                                1
D2V8, multiclass
                                                  clus
vv                                                 AMP PEAK  2(1P12) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                      6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                    0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                         0
                                                  clus
vv                                                 AMP PEAK  2(1P12) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                       40
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           1
D2V9, continuous
D2V10, continuous
                             vv
clus                          R0 R1 RX
  AMP PEAK  2(1P12) MUTATED    5  1  0
  AMP PEAK  2(1P12) WILD-TYPE 23 19  2
D2V11, multiclass
    clus
vv   AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  R0                         5                          23
  R1                         1                          19
  RX                         0                           2
D2V12, continuous

Clustering(3) Variable = AMP PEAK  3(7Q22.1) MUTATION ANALYSIS
D3V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  3(7Q22.1) MUTATED    8  5
  AMP PEAK  3(7Q22.1) WILD-TYPE 24 12
  AMP PEAK  3(7Q22.1) MUTATED AMP PEAK  3(7Q22.1) WILD-TYPE 
                           13                            36 
  AMP PEAK  3(7Q22.1) MUTATED AMP PEAK  3(7Q22.1) WILD-TYPE 
                            5                            12 
$`AMP PEAK  3(7Q22.1) MUTATED`
TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7926 TCGA-HZ-8005 TCGA-HZ-8636 
        0.03        12.89         7.86         0.26         3.91         0.16 
TCGA-HZ-A4BH TCGA-IB-7645 TCGA-IB-7652 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 
        5.98        49.38        15.65        15.78        19.66         3.85 
TCGA-IB-8127 
       17.13 

$`AMP PEAK  3(7Q22.1) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 
        0.13         7.63         0.92         0.66         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 
       12.13        12.03         0.62         0.99         0.69         0.92 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK 
        0.49         0.10         2.96         0.76         1.02         1.51 
TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7885 
       11.41         4.77        21.86        15.35        19.82        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 
        4.04         3.58        43.79        16.04        15.95         0.56 

  AMP PEAK  3(7Q22.1) MUTATED AMP PEAK  3(7Q22.1) WILD-TYPE 
                         0.03                          0.10 
  AMP PEAK  3(7Q22.1) MUTATED AMP PEAK  3(7Q22.1) WILD-TYPE 
                        49.38                         43.79 
  AMP PEAK  3(7Q22.1) MUTATED AMP PEAK  3(7Q22.1) WILD-TYPE 
                        7.860                         4.405 
[1] "0.0 - 49.4 (7.9)" "0.1 - 43.8 (4.4)"
                   TCGA-F2-6879                    TCGA-F2-6880 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
  "AMP PEAK  3(7Q22.1) MUTATED"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-8127 
  "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
  "AMP PEAK  3(7Q22.1) MUTATED"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-8127 
  "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
  "AMP PEAK  3(7Q22.1) MUTATED"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-8127 
  "AMP PEAK  3(7Q22.1) MUTATED" 
[1] "hr=" "1.5"
D3V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  AMP PEAK  3(7Q22.1) MUTATED          0        1         1        10         0
  AMP PEAK  3(7Q22.1) WILD-TYPE        2        1         5        28         2
                               vv
clus                            STAGE IV
  AMP PEAK  3(7Q22.1) MUTATED          1
  AMP PEAK  3(7Q22.1) WILD-TYPE        1
D3V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  AMP PEAK  3(7Q22.1) MUTATED       1    12
  AMP PEAK  3(7Q22.1) WILD-TYPE     4    35
D3V4, multiclass
       clus
vv      AMP PEAK  3(7Q22.1) MUTATED AMP PEAK  3(7Q22.1) WILD-TYPE
  T1+T2                           1                             4
  T3+T4                          12                            35
D3V5, binary
                               cls
clus                             0  1
  AMP PEAK  3(7Q22.1) MUTATED    3 10
  AMP PEAK  3(7Q22.1) WILD-TYPE  9 30
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(7Q22.1) MUTATED      3   10
  AMP PEAK  3(7Q22.1) WILD-TYPE    9   30
   clus
vv  AMP PEAK  3(7Q22.1) MUTATED AMP PEAK  3(7Q22.1) WILD-TYPE
  0                           3                             9
  1                          10                            30
                               vv
clus                            M0 M1 MX
  AMP PEAK  3(7Q22.1) MUTATED    8  1  4
  AMP PEAK  3(7Q22.1) WILD-TYPE 19  1 19
D3V6, multiclass
    clus
vv   AMP PEAK  3(7Q22.1) MUTATED AMP PEAK  3(7Q22.1) WILD-TYPE
  M0                           8                            19
  M1                           1                             1
  MX                           4                            19
D3V7, binary
                               cls
clus                             0  1
  AMP PEAK  3(7Q22.1) MUTATED    6  7
  AMP PEAK  3(7Q22.1) WILD-TYPE 22 17
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(7Q22.1) MUTATED      6    7
  AMP PEAK  3(7Q22.1) WILD-TYPE   22   17
        clus
vv       AMP PEAK  3(7Q22.1) MUTATED AMP PEAK  3(7Q22.1) WILD-TYPE
  FEMALE                           6                            22
  MALE                             7                            17
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  3(7Q22.1) MUTATED                                    12
  AMP PEAK  3(7Q22.1) WILD-TYPE                                  34
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  3(7Q22.1) MUTATED                                       1
  AMP PEAK  3(7Q22.1) WILD-TYPE                                     3
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  3(7Q22.1) MUTATED                                                  0
  AMP PEAK  3(7Q22.1) WILD-TYPE                                                1
D3V8, multiclass
                                                  clus
vv                                                 AMP PEAK  3(7Q22.1) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                       12
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 AMP PEAK  3(7Q22.1) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         34
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D3V9, continuous
[1] "Remove cluster labels:"      "AMP PEAK  3(7Q22.1) MUTATED"
clus
  AMP PEAK  3(7Q22.1) MUTATED AMP PEAK  3(7Q22.1) WILD-TYPE 
                            2                            11 
                   TCGA-F2-6880                    TCGA-FB-A4P5 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-H6-A45N                    TCGA-IB-7644 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7891 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-8126 
"AMP PEAK  3(7Q22.1) WILD-TYPE" 
D3V10, continuous
[1] "Remove cluster labels:"      "AMP PEAK  3(7Q22.1) MUTATED"
clus
  AMP PEAK  3(7Q22.1) MUTATED AMP PEAK  3(7Q22.1) WILD-TYPE 
                            2                             8 
                   TCGA-FB-A4P5                    TCGA-IB-7644 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-8126 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                               vv
clus                            R0 R1 RX
  AMP PEAK  3(7Q22.1) MUTATED    5  5  2
  AMP PEAK  3(7Q22.1) WILD-TYPE 23 15  0
D3V11, multiclass
    clus
vv   AMP PEAK  3(7Q22.1) MUTATED AMP PEAK  3(7Q22.1) WILD-TYPE
  R0                           5                            23
  R1                           5                            15
  RX                           2                             0
D3V12, continuous

Clustering(4) Variable = AMP PEAK  4(8Q24.21) MUTATION ANALYSIS
D4V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  4(8Q24.21) MUTATED    9  9
  AMP PEAK  4(8Q24.21) WILD-TYPE 23  8
  AMP PEAK  4(8Q24.21) MUTATED AMP PEAK  4(8Q24.21) WILD-TYPE 
                            18                             31 
  AMP PEAK  4(8Q24.21) MUTATED AMP PEAK  4(8Q24.21) WILD-TYPE 
                             9                              8 
$`AMP PEAK  4(8Q24.21) MUTATED`
TCGA-F2-6879 TCGA-FB-A545 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7925 
       10.98         0.03         7.86         0.92         0.13        12.03 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        3.91         0.92         0.16         4.77        21.86        15.35 
TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-8127 
       15.65         4.04        15.78        19.66         3.85        17.13 

$`AMP PEAK  4(8Q24.21) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.96        11.84         7.07         5.03         5.19         0.13 
TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 
       12.89         7.63         0.66         0.26        12.13         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 
        0.62         0.99         0.69         0.49         0.10         2.96 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         1.02         5.98         1.51        11.41        49.38 
TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7891 TCGA-IB-7897 
       19.82        27.98         3.58        43.79        16.04        15.95 
TCGA-IB-8126 
        0.56 

  AMP PEAK  4(8Q24.21) MUTATED AMP PEAK  4(8Q24.21) WILD-TYPE 
                          0.03                           0.10 
  AMP PEAK  4(8Q24.21) MUTATED AMP PEAK  4(8Q24.21) WILD-TYPE 
                         21.86                          49.38 
  AMP PEAK  4(8Q24.21) MUTATED AMP PEAK  4(8Q24.21) WILD-TYPE 
                         6.315                          5.030 
[1] "0.0 - 21.9 (6.3)" "0.1 - 49.4 (5.0)"
                    TCGA-F2-6879                     TCGA-F2-6880 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "AMP PEAK  4(8Q24.21) MUTATED"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "AMP PEAK  4(8Q24.21) MUTATED"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "AMP PEAK  4(8Q24.21) MUTATED"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-IB-8127 
  "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "AMP PEAK  4(8Q24.21) MUTATED"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "AMP PEAK  4(8Q24.21) MUTATED"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "AMP PEAK  4(8Q24.21) MUTATED"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-IB-8127 
  "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "AMP PEAK  4(8Q24.21) MUTATED"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "AMP PEAK  4(8Q24.21) MUTATED"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "AMP PEAK  4(8Q24.21) MUTATED"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-IB-8127 
  "AMP PEAK  4(8Q24.21) MUTATED" 
[1] "hr=" "2.4"
D4V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK  4(8Q24.21) MUTATED          0        1         2        15
  AMP PEAK  4(8Q24.21) WILD-TYPE        2        1         4        23
                                vv
clus                             STAGE III STAGE IV
  AMP PEAK  4(8Q24.21) MUTATED           0        1
  AMP PEAK  4(8Q24.21) WILD-TYPE         2        1
D4V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  AMP PEAK  4(8Q24.21) MUTATED       1    18
  AMP PEAK  4(8Q24.21) WILD-TYPE     4    29
D4V4, multiclass
       clus
vv      AMP PEAK  4(8Q24.21) MUTATED AMP PEAK  4(8Q24.21) WILD-TYPE
  T1+T2                            1                              4
  T3+T4                           18                             29
D4V5, binary
                                cls
clus                              0  1
  AMP PEAK  4(8Q24.21) MUTATED    4 15
  AMP PEAK  4(8Q24.21) WILD-TYPE  8 25
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  4(8Q24.21) MUTATED      4   15
  AMP PEAK  4(8Q24.21) WILD-TYPE    8   25
   clus
vv  AMP PEAK  4(8Q24.21) MUTATED AMP PEAK  4(8Q24.21) WILD-TYPE
  0                            4                              8
  1                           15                             25
                                vv
clus                             M0 M1 MX
  AMP PEAK  4(8Q24.21) MUTATED   12  1  6
  AMP PEAK  4(8Q24.21) WILD-TYPE 15  1 17
D4V6, multiclass
    clus
vv   AMP PEAK  4(8Q24.21) MUTATED AMP PEAK  4(8Q24.21) WILD-TYPE
  M0                           12                             15
  M1                            1                              1
  MX                            6                             17
D4V7, binary
                                cls
clus                              0  1
  AMP PEAK  4(8Q24.21) MUTATED    9 10
  AMP PEAK  4(8Q24.21) WILD-TYPE 19 14
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  4(8Q24.21) MUTATED      9   10
  AMP PEAK  4(8Q24.21) WILD-TYPE   19   14
        clus
vv       AMP PEAK  4(8Q24.21) MUTATED AMP PEAK  4(8Q24.21) WILD-TYPE
  FEMALE                            9                             19
  MALE                             10                             14
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  4(8Q24.21) MUTATED                                    17
  AMP PEAK  4(8Q24.21) WILD-TYPE                                  29
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  4(8Q24.21) MUTATED                                       1
  AMP PEAK  4(8Q24.21) WILD-TYPE                                     3
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  4(8Q24.21) MUTATED                                                  0
  AMP PEAK  4(8Q24.21) WILD-TYPE                                                1
D4V8, multiclass
                                                  clus
vv                                                 AMP PEAK  4(8Q24.21) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        17
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 AMP PEAK  4(8Q24.21) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          29
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D4V9, continuous
D4V10, continuous
                                vv
clus                             R0 R1 RX
  AMP PEAK  4(8Q24.21) MUTATED    8  9  1
  AMP PEAK  4(8Q24.21) WILD-TYPE 20 11  1
D4V11, multiclass
    clus
vv   AMP PEAK  4(8Q24.21) MUTATED AMP PEAK  4(8Q24.21) WILD-TYPE
  R0                            8                             20
  R1                            9                             11
  RX                            1                              1
D4V12, continuous

Clustering(5) Variable = AMP PEAK  5(9P13.3) MUTATION ANALYSIS
D5V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  5(9P13.3) MUTATED    3  2
  AMP PEAK  5(9P13.3) WILD-TYPE 29 15
  AMP PEAK  5(9P13.3) MUTATED AMP PEAK  5(9P13.3) WILD-TYPE 
                            5                            44 
  AMP PEAK  5(9P13.3) MUTATED AMP PEAK  5(9P13.3) WILD-TYPE 
                            2                            15 
$`AMP PEAK  5(9P13.3) MUTATED`
TCGA-HZ-7925 TCGA-HZ-8636 TCGA-IB-7646 TCGA-IB-7893 TCGA-IB-8126 
       12.03         0.16         4.77         3.85         0.56 

$`AMP PEAK  5(9P13.3) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
        0.13         0.03        12.89         7.63         7.86         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 
        0.66         0.13         0.26        12.13         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.99         0.69         3.91         0.92         0.49         0.10 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.96         0.76         1.02         5.98         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
       49.38        21.86        15.35        19.82        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.58        43.79        15.78        19.66        16.04 
TCGA-IB-7897 TCGA-IB-8127 
       15.95        17.13 

  AMP PEAK  5(9P13.3) MUTATED AMP PEAK  5(9P13.3) WILD-TYPE 
                         0.16                          0.03 
  AMP PEAK  5(9P13.3) MUTATED AMP PEAK  5(9P13.3) WILD-TYPE 
                        12.03                         49.38 
  AMP PEAK  5(9P13.3) MUTATED AMP PEAK  5(9P13.3) WILD-TYPE 
                        3.850                         5.585 
[1] "0.2 - 12.0 (3.9)" "0.0 - 49.4 (5.6)"
                   TCGA-F2-6879                    TCGA-F2-6880 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "AMP PEAK  5(9P13.3) MUTATED" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK  5(9P13.3) WILD-TYPE"   "AMP PEAK  5(9P13.3) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"AMP PEAK  5(9P13.3) WILD-TYPE"   "AMP PEAK  5(9P13.3) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"AMP PEAK  5(9P13.3) WILD-TYPE"   "AMP PEAK  5(9P13.3) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"AMP PEAK  5(9P13.3) WILD-TYPE"   "AMP PEAK  5(9P13.3) MUTATED" 
                   TCGA-IB-8127 
"AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "AMP PEAK  5(9P13.3) MUTATED" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK  5(9P13.3) WILD-TYPE"   "AMP PEAK  5(9P13.3) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"AMP PEAK  5(9P13.3) WILD-TYPE"   "AMP PEAK  5(9P13.3) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"AMP PEAK  5(9P13.3) WILD-TYPE"   "AMP PEAK  5(9P13.3) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"AMP PEAK  5(9P13.3) WILD-TYPE"   "AMP PEAK  5(9P13.3) MUTATED" 
                   TCGA-IB-8127 
"AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "AMP PEAK  5(9P13.3) MUTATED" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK  5(9P13.3) WILD-TYPE"   "AMP PEAK  5(9P13.3) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"AMP PEAK  5(9P13.3) WILD-TYPE"   "AMP PEAK  5(9P13.3) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"AMP PEAK  5(9P13.3) WILD-TYPE"   "AMP PEAK  5(9P13.3) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"AMP PEAK  5(9P13.3) WILD-TYPE"   "AMP PEAK  5(9P13.3) MUTATED" 
                   TCGA-IB-8127 
"AMP PEAK  5(9P13.3) WILD-TYPE" 
[1] "hr=" "3.8"
D5V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  AMP PEAK  5(9P13.3) MUTATED          0        0         1         2         1
  AMP PEAK  5(9P13.3) WILD-TYPE        2        2         5        36         1
                               vv
clus                            STAGE IV
  AMP PEAK  5(9P13.3) MUTATED          1
  AMP PEAK  5(9P13.3) WILD-TYPE        1
D5V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  AMP PEAK  5(9P13.3) MUTATED       0     5
  AMP PEAK  5(9P13.3) WILD-TYPE     5    42
D5V4, multiclass
       clus
vv      AMP PEAK  5(9P13.3) MUTATED AMP PEAK  5(9P13.3) WILD-TYPE
  T1+T2                           0                             5
  T3+T4                           5                            42
D5V5, binary
                               cls
clus                             0  1
  AMP PEAK  5(9P13.3) MUTATED    2  3
  AMP PEAK  5(9P13.3) WILD-TYPE 10 37
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(9P13.3) MUTATED      2    3
  AMP PEAK  5(9P13.3) WILD-TYPE   10   37
   clus
vv  AMP PEAK  5(9P13.3) MUTATED AMP PEAK  5(9P13.3) WILD-TYPE
  0                           2                            10
  1                           3                            37
                               vv
clus                            M0 M1 MX
  AMP PEAK  5(9P13.3) MUTATED    3  1  1
  AMP PEAK  5(9P13.3) WILD-TYPE 24  1 22
D5V6, multiclass
    clus
vv   AMP PEAK  5(9P13.3) MUTATED AMP PEAK  5(9P13.3) WILD-TYPE
  M0                           3                            24
  M1                           1                             1
  MX                           1                            22
D5V7, binary
                               cls
clus                             0  1
  AMP PEAK  5(9P13.3) MUTATED    2  3
  AMP PEAK  5(9P13.3) WILD-TYPE 26 21
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(9P13.3) MUTATED      2    3
  AMP PEAK  5(9P13.3) WILD-TYPE   26   21
        clus
vv       AMP PEAK  5(9P13.3) MUTATED AMP PEAK  5(9P13.3) WILD-TYPE
  FEMALE                           2                            26
  MALE                             3                            21
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  5(9P13.3) MUTATED                                     5
  AMP PEAK  5(9P13.3) WILD-TYPE                                  41
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  5(9P13.3) MUTATED                                       0
  AMP PEAK  5(9P13.3) WILD-TYPE                                     4
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  5(9P13.3) MUTATED                                                  0
  AMP PEAK  5(9P13.3) WILD-TYPE                                                1
D5V8, multiclass
                                                  clus
vv                                                 AMP PEAK  5(9P13.3) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 AMP PEAK  5(9P13.3) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         41
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D5V9, continuous
[1] "Remove cluster labels:"      "AMP PEAK  5(9P13.3) MUTATED"
clus
  AMP PEAK  5(9P13.3) MUTATED AMP PEAK  5(9P13.3) WILD-TYPE 
                            1                            12 
                   TCGA-F2-6880                    TCGA-FB-A4P5 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7649 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7885 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-8127 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
D5V10, continuous
[1] "Remove cluster labels:"      "AMP PEAK  5(9P13.3) MUTATED"
clus
  AMP PEAK  5(9P13.3) MUTATED AMP PEAK  5(9P13.3) WILD-TYPE 
                            1                             9 
                   TCGA-FB-A4P5                    TCGA-H6-8124 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7649 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7885 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7891 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-8127 
"AMP PEAK  5(9P13.3) WILD-TYPE" 
                               vv
clus                            R0 R1 RX
  AMP PEAK  5(9P13.3) MUTATED    2  3  0
  AMP PEAK  5(9P13.3) WILD-TYPE 26 17  2
D5V11, multiclass
    clus
vv   AMP PEAK  5(9P13.3) MUTATED AMP PEAK  5(9P13.3) WILD-TYPE
  R0                           2                            26
  R1                           3                            17
  RX                           0                             2
D5V12, continuous

Clustering(6) Variable = AMP PEAK  6(11P11.2) MUTATION ANALYSIS
D6V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  6(11P11.2) MUTATED    2  2
  AMP PEAK  6(11P11.2) WILD-TYPE 30 15
  AMP PEAK  6(11P11.2) MUTATED AMP PEAK  6(11P11.2) WILD-TYPE 
                             4                             45 
  AMP PEAK  6(11P11.2) MUTATED AMP PEAK  6(11P11.2) WILD-TYPE 
                             2                             15 
$`AMP PEAK  6(11P11.2) MUTATED`
TCGA-FB-A545 TCGA-IB-7647 TCGA-IB-7893 TCGA-IB-8127 
        0.03        21.86         3.85        17.13 

$`AMP PEAK  6(11P11.2) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
        0.13        12.89         7.63         7.86         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        12.03         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.99         0.69         3.91         0.92         0.49         0.10 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.96         0.76         1.02         5.98         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       11.41        49.38         4.77        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.58        43.79        15.78        19.66 
TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 
       16.04        15.95         0.56 

  AMP PEAK  6(11P11.2) MUTATED AMP PEAK  6(11P11.2) WILD-TYPE 
                          0.03                           0.10 
  AMP PEAK  6(11P11.2) MUTATED AMP PEAK  6(11P11.2) WILD-TYPE 
                         21.86                          49.38 
  AMP PEAK  6(11P11.2) MUTATED AMP PEAK  6(11P11.2) WILD-TYPE 
                         10.49                           5.03 
[1] "0.0 - 21.9 (10.5)" "0.1 - 49.4 (5.0)" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK  6(11P11.2) WILD-TYPE"   "AMP PEAK  6(11P11.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "AMP PEAK  6(11P11.2) MUTATED" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK  6(11P11.2) WILD-TYPE"   "AMP PEAK  6(11P11.2) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-8127 
  "AMP PEAK  6(11P11.2) MUTATED" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK  6(11P11.2) WILD-TYPE"   "AMP PEAK  6(11P11.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "AMP PEAK  6(11P11.2) MUTATED" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK  6(11P11.2) WILD-TYPE"   "AMP PEAK  6(11P11.2) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-8127 
  "AMP PEAK  6(11P11.2) MUTATED" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK  6(11P11.2) WILD-TYPE"   "AMP PEAK  6(11P11.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "AMP PEAK  6(11P11.2) MUTATED" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK  6(11P11.2) WILD-TYPE"   "AMP PEAK  6(11P11.2) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-8127 
  "AMP PEAK  6(11P11.2) MUTATED" 
[1] "hr=" "1"  
D6V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK  6(11P11.2) MUTATED          0        0         1         3
  AMP PEAK  6(11P11.2) WILD-TYPE        2        2         5        35
                                vv
clus                             STAGE III STAGE IV
  AMP PEAK  6(11P11.2) MUTATED           0        0
  AMP PEAK  6(11P11.2) WILD-TYPE         2        2
D6V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  AMP PEAK  6(11P11.2) MUTATED       0     4
  AMP PEAK  6(11P11.2) WILD-TYPE     5    43
D6V4, multiclass
       clus
vv      AMP PEAK  6(11P11.2) MUTATED AMP PEAK  6(11P11.2) WILD-TYPE
  T1+T2                            0                              5
  T3+T4                            4                             43
D6V5, binary
                                cls
clus                              0  1
  AMP PEAK  6(11P11.2) MUTATED    1  3
  AMP PEAK  6(11P11.2) WILD-TYPE 11 37
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(11P11.2) MUTATED      1    3
  AMP PEAK  6(11P11.2) WILD-TYPE   11   37
   clus
vv  AMP PEAK  6(11P11.2) MUTATED AMP PEAK  6(11P11.2) WILD-TYPE
  0                            1                             11
  1                            3                             37
                                vv
clus                             M0 M1 MX
  AMP PEAK  6(11P11.2) MUTATED    4  0  0
  AMP PEAK  6(11P11.2) WILD-TYPE 23  2 23
D6V6, multiclass
    clus
vv   AMP PEAK  6(11P11.2) MUTATED AMP PEAK  6(11P11.2) WILD-TYPE
  M0                            4                             23
  M1                            0                              2
  MX                            0                             23
D6V7, binary
                                cls
clus                              0  1
  AMP PEAK  6(11P11.2) MUTATED    2  2
  AMP PEAK  6(11P11.2) WILD-TYPE 26 22
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(11P11.2) MUTATED      2    2
  AMP PEAK  6(11P11.2) WILD-TYPE   26   22
        clus
vv       AMP PEAK  6(11P11.2) MUTATED AMP PEAK  6(11P11.2) WILD-TYPE
  FEMALE                            2                             26
  MALE                              2                             22
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  6(11P11.2) MUTATED                                     4
  AMP PEAK  6(11P11.2) WILD-TYPE                                  42
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  6(11P11.2) MUTATED                                       0
  AMP PEAK  6(11P11.2) WILD-TYPE                                     4
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  6(11P11.2) MUTATED                                                  0
  AMP PEAK  6(11P11.2) WILD-TYPE                                                1
D6V8, multiclass
                                                  clus
vv                                                 AMP PEAK  6(11P11.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 AMP PEAK  6(11P11.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          42
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D6V9, continuous
[1] "Remove cluster labels:"       "AMP PEAK  6(11P11.2) MUTATED"
clus
  AMP PEAK  6(11P11.2) MUTATED AMP PEAK  6(11P11.2) WILD-TYPE 
                             1                             12 
                    TCGA-F2-6880                     TCGA-FB-A4P5 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7649 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7885 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-8126 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
D6V10, continuous
[1] "Remove cluster labels:"       "AMP PEAK  6(11P11.2) MUTATED"
clus
  AMP PEAK  6(11P11.2) MUTATED AMP PEAK  6(11P11.2) WILD-TYPE 
                             1                              9 
                    TCGA-FB-A4P5                     TCGA-H6-8124 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7649 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7885 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7891 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-8126 
"AMP PEAK  6(11P11.2) WILD-TYPE" 
                                vv
clus                             R0 R1 RX
  AMP PEAK  6(11P11.2) MUTATED    1  2  0
  AMP PEAK  6(11P11.2) WILD-TYPE 27 18  2
D6V11, multiclass
    clus
vv   AMP PEAK  6(11P11.2) MUTATED AMP PEAK  6(11P11.2) WILD-TYPE
  R0                            1                             27
  R1                            2                             18
  RX                            0                              2
D6V12, continuous

Clustering(7) Variable = AMP PEAK  7(12P13.33) MUTATION ANALYSIS
D7V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK  7(12P13.33) MUTATED    3  4
  AMP PEAK  7(12P13.33) WILD-TYPE 29 13
  AMP PEAK  7(12P13.33) MUTATED AMP PEAK  7(12P13.33) WILD-TYPE 
                              7                              42 
  AMP PEAK  7(12P13.33) MUTATED AMP PEAK  7(12P13.33) WILD-TYPE 
                              4                              13 
$`AMP PEAK  7(12P13.33) MUTATED`
TCGA-F2-6879 TCGA-HZ-7289 TCGA-HZ-7922 TCGA-HZ-8005 TCGA-IB-7646 TCGA-IB-7890 
       10.98         7.86         0.13         3.91         4.77        19.66 
TCGA-IB-8127 
       17.13 

$`AMP PEAK  7(12P13.33) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.96        11.84         7.07         5.03         5.19         0.13 
TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7923 
        0.03        12.89         7.63         0.92         0.66         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        12.03         0.26         0.62         0.99         0.69 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.92         0.49         0.10         0.16         2.96         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 
        1.02         5.98         1.51        11.41        49.38        21.86 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       15.35        19.82        15.65        27.98         4.04         3.58 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       43.79        15.78        16.04         3.85        15.95         0.56 

  AMP PEAK  7(12P13.33) MUTATED AMP PEAK  7(12P13.33) WILD-TYPE 
                           0.13                            0.03 
  AMP PEAK  7(12P13.33) MUTATED AMP PEAK  7(12P13.33) WILD-TYPE 
                          19.66                           49.38 
  AMP PEAK  7(12P13.33) MUTATED AMP PEAK  7(12P13.33) WILD-TYPE 
                          7.860                           4.535 
[1] "0.1 - 19.7 (7.9)" "0.0 - 49.4 (4.5)"
                     TCGA-F2-6879                      TCGA-F2-6880 
  "AMP PEAK  7(12P13.33) MUTATED" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
  "AMP PEAK  7(12P13.33) MUTATED" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"AMP PEAK  7(12P13.33) WILD-TYPE"   "AMP PEAK  7(12P13.33) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"AMP PEAK  7(12P13.33) WILD-TYPE"   "AMP PEAK  7(12P13.33) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"AMP PEAK  7(12P13.33) WILD-TYPE"   "AMP PEAK  7(12P13.33) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"AMP PEAK  7(12P13.33) WILD-TYPE"   "AMP PEAK  7(12P13.33) MUTATED" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-8127 
  "AMP PEAK  7(12P13.33) MUTATED" 
                     TCGA-F2-6879                      TCGA-F2-6880 
  "AMP PEAK  7(12P13.33) MUTATED" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
  "AMP PEAK  7(12P13.33) MUTATED" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"AMP PEAK  7(12P13.33) WILD-TYPE"   "AMP PEAK  7(12P13.33) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"AMP PEAK  7(12P13.33) WILD-TYPE"   "AMP PEAK  7(12P13.33) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"AMP PEAK  7(12P13.33) WILD-TYPE"   "AMP PEAK  7(12P13.33) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"AMP PEAK  7(12P13.33) WILD-TYPE"   "AMP PEAK  7(12P13.33) MUTATED" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-8127 
  "AMP PEAK  7(12P13.33) MUTATED" 
                     TCGA-F2-6879                      TCGA-F2-6880 
  "AMP PEAK  7(12P13.33) MUTATED" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
  "AMP PEAK  7(12P13.33) MUTATED" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"AMP PEAK  7(12P13.33) WILD-TYPE"   "AMP PEAK  7(12P13.33) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"AMP PEAK  7(12P13.33) WILD-TYPE"   "AMP PEAK  7(12P13.33) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"AMP PEAK  7(12P13.33) WILD-TYPE"   "AMP PEAK  7(12P13.33) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"AMP PEAK  7(12P13.33) WILD-TYPE"   "AMP PEAK  7(12P13.33) MUTATED" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-8127 
  "AMP PEAK  7(12P13.33) MUTATED" 
[1] "hr=" "2"  
D7V2, continuous
                                 vv
clus                              STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK  7(12P13.33) MUTATED          0        1         0         6
  AMP PEAK  7(12P13.33) WILD-TYPE        2        1         6        32
                                 vv
clus                              STAGE III STAGE IV
  AMP PEAK  7(12P13.33) MUTATED           0        0
  AMP PEAK  7(12P13.33) WILD-TYPE         2        2
D7V3, multiclass
                                 vv
clus                              T1+T2 T3+T4
  AMP PEAK  7(12P13.33) MUTATED       1     6
  AMP PEAK  7(12P13.33) WILD-TYPE     4    41
D7V4, multiclass
       clus
vv      AMP PEAK  7(12P13.33) MUTATED AMP PEAK  7(12P13.33) WILD-TYPE
  T1+T2                             1                               4
  T3+T4                             6                              41
D7V5, binary
                                 cls
clus                               0  1
  AMP PEAK  7(12P13.33) MUTATED    1  6
  AMP PEAK  7(12P13.33) WILD-TYPE 11 34
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK  7(12P13.33) MUTATED      1    6
  AMP PEAK  7(12P13.33) WILD-TYPE   11   34
   clus
vv  AMP PEAK  7(12P13.33) MUTATED AMP PEAK  7(12P13.33) WILD-TYPE
  0                             1                              11
  1                             6                              34
                                 vv
clus                              M0 M1 MX
  AMP PEAK  7(12P13.33) MUTATED    4  0  3
  AMP PEAK  7(12P13.33) WILD-TYPE 23  2 20
D7V6, multiclass
    clus
vv   AMP PEAK  7(12P13.33) MUTATED AMP PEAK  7(12P13.33) WILD-TYPE
  M0                             4                              23
  M1                             0                               2
  MX                             3                              20
D7V7, binary
                                 cls
clus                               0  1
  AMP PEAK  7(12P13.33) MUTATED    1  6
  AMP PEAK  7(12P13.33) WILD-TYPE 27 18
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK  7(12P13.33) MUTATED      1    6
  AMP PEAK  7(12P13.33) WILD-TYPE   27   18
        clus
vv       AMP PEAK  7(12P13.33) MUTATED AMP PEAK  7(12P13.33) WILD-TYPE
  FEMALE                             1                              27
  MALE                               6                              18
                                 vv
clus                              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  7(12P13.33) MUTATED                                     5
  AMP PEAK  7(12P13.33) WILD-TYPE                                  41
                                 vv
clus                              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  7(12P13.33) MUTATED                                       1
  AMP PEAK  7(12P13.33) WILD-TYPE                                     3
                                 vv
clus                              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  7(12P13.33) MUTATED                                                  0
  AMP PEAK  7(12P13.33) WILD-TYPE                                                1
D7V8, multiclass
                                                  clus
vv                                                 AMP PEAK  7(12P13.33) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             0
                                                  clus
vv                                                 AMP PEAK  7(12P13.33) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                           41
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                               1
D7V9, continuous
[1] "Remove cluster labels:"        "AMP PEAK  7(12P13.33) MUTATED"
clus
  AMP PEAK  7(12P13.33) MUTATED AMP PEAK  7(12P13.33) WILD-TYPE 
                              1                              12 
                     TCGA-F2-6880                      TCGA-FB-A4P5 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7644                      TCGA-IB-7649 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7885 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7886                      TCGA-IB-7887 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-8126 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
D7V10, continuous
[1] "Remove cluster labels:"        "AMP PEAK  7(12P13.33) MUTATED"
clus
  AMP PEAK  7(12P13.33) MUTATED AMP PEAK  7(12P13.33) WILD-TYPE 
                              1                               9 
                     TCGA-FB-A4P5                      TCGA-H6-8124 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7644                      TCGA-IB-7649 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7885 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7886                      TCGA-IB-7891 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-8126 
"AMP PEAK  7(12P13.33) WILD-TYPE" 
                                 vv
clus                              R0 R1 RX
  AMP PEAK  7(12P13.33) MUTATED    3  3  1
  AMP PEAK  7(12P13.33) WILD-TYPE 25 17  1
D7V11, multiclass
    clus
vv   AMP PEAK  7(12P13.33) MUTATED AMP PEAK  7(12P13.33) WILD-TYPE
  R0                             3                              25
  R1                             3                              17
  RX                             1                               1
D7V12, continuous

Clustering(8) Variable = AMP PEAK  8(12P11.21) MUTATION ANALYSIS
D8V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK  8(12P11.21) MUTATED    6  4
  AMP PEAK  8(12P11.21) WILD-TYPE 26 13
  AMP PEAK  8(12P11.21) MUTATED AMP PEAK  8(12P11.21) WILD-TYPE 
                             10                              39 
  AMP PEAK  8(12P11.21) MUTATED AMP PEAK  8(12P11.21) WILD-TYPE 
                              4                              13 
$`AMP PEAK  8(12P11.21) MUTATED`
TCGA-HZ-7289 TCGA-HZ-7922 TCGA-HZ-8005 TCGA-HZ-8636 TCGA-HZ-A4BH TCGA-HZ-A4BK 
        7.86         0.13         3.91         0.16         5.98         1.51 
TCGA-IB-7646 TCGA-IB-7886 TCGA-IB-7890 TCGA-IB-8127 
        4.77         4.04        19.66        17.13 

$`AMP PEAK  8(12P11.21) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7919 
        0.13         0.03        12.89         7.63         0.92         0.66 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        12.03         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.69         0.92         0.49         0.10         2.96         0.76 
TCGA-HZ-A49H TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
        1.02        11.41        49.38        21.86        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 
       15.65        27.98         3.58        43.79        15.78        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
        3.85        15.95         0.56 

  AMP PEAK  8(12P11.21) MUTATED AMP PEAK  8(12P11.21) WILD-TYPE 
                           0.13                            0.03 
  AMP PEAK  8(12P11.21) MUTATED AMP PEAK  8(12P11.21) WILD-TYPE 
                          19.66                           49.38 
  AMP PEAK  8(12P11.21) MUTATED AMP PEAK  8(12P11.21) WILD-TYPE 
                          4.405                           5.190 
[1] "0.1 - 19.7 (4.4)" "0.0 - 49.4 (5.2)"
                     TCGA-F2-6879                      TCGA-F2-6880 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
  "AMP PEAK  8(12P11.21) MUTATED" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
  "AMP PEAK  8(12P11.21) MUTATED" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-8127 
  "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
  "AMP PEAK  8(12P11.21) MUTATED" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
  "AMP PEAK  8(12P11.21) MUTATED" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-8127 
  "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
  "AMP PEAK  8(12P11.21) MUTATED" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
  "AMP PEAK  8(12P11.21) MUTATED" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-8127 
  "AMP PEAK  8(12P11.21) MUTATED" 
[1] "hr=" "2"  
D8V2, continuous
                                 vv
clus                              STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK  8(12P11.21) MUTATED          0        1         0         8
  AMP PEAK  8(12P11.21) WILD-TYPE        2        1         6        30
                                 vv
clus                              STAGE III STAGE IV
  AMP PEAK  8(12P11.21) MUTATED           0        1
  AMP PEAK  8(12P11.21) WILD-TYPE         2        1
D8V3, multiclass
                                 vv
clus                              T1+T2 T3+T4
  AMP PEAK  8(12P11.21) MUTATED       1     9
  AMP PEAK  8(12P11.21) WILD-TYPE     4    38
D8V4, multiclass
       clus
vv      AMP PEAK  8(12P11.21) MUTATED AMP PEAK  8(12P11.21) WILD-TYPE
  T1+T2                             1                               4
  T3+T4                             9                              38
D8V5, binary
                                 cls
clus                               0  1
  AMP PEAK  8(12P11.21) MUTATED    2  8
  AMP PEAK  8(12P11.21) WILD-TYPE 10 32
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK  8(12P11.21) MUTATED      2    8
  AMP PEAK  8(12P11.21) WILD-TYPE   10   32
   clus
vv  AMP PEAK  8(12P11.21) MUTATED AMP PEAK  8(12P11.21) WILD-TYPE
  0                             2                              10
  1                             8                              32
                                 vv
clus                              M0 M1 MX
  AMP PEAK  8(12P11.21) MUTATED    4  1  5
  AMP PEAK  8(12P11.21) WILD-TYPE 23  1 18
D8V6, multiclass
    clus
vv   AMP PEAK  8(12P11.21) MUTATED AMP PEAK  8(12P11.21) WILD-TYPE
  M0                             4                              23
  M1                             1                               1
  MX                             5                              18
D8V7, binary
                                 cls
clus                               0  1
  AMP PEAK  8(12P11.21) MUTATED    2  8
  AMP PEAK  8(12P11.21) WILD-TYPE 26 16
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK  8(12P11.21) MUTATED      2    8
  AMP PEAK  8(12P11.21) WILD-TYPE   26   16
        clus
vv       AMP PEAK  8(12P11.21) MUTATED AMP PEAK  8(12P11.21) WILD-TYPE
  FEMALE                             2                              26
  MALE                               8                              16
                                 vv
clus                              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  8(12P11.21) MUTATED                                     8
  AMP PEAK  8(12P11.21) WILD-TYPE                                  38
                                 vv
clus                              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  8(12P11.21) MUTATED                                       2
  AMP PEAK  8(12P11.21) WILD-TYPE                                     2
                                 vv
clus                              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  8(12P11.21) MUTATED                                                  0
  AMP PEAK  8(12P11.21) WILD-TYPE                                                1
D8V8, multiclass
                                                  clus
vv                                                 AMP PEAK  8(12P11.21) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             0
                                                  clus
vv                                                 AMP PEAK  8(12P11.21) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                           38
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                          2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                               1
D8V9, continuous
[1] "Remove cluster labels:"        "AMP PEAK  8(12P11.21) MUTATED"
clus
  AMP PEAK  8(12P11.21) MUTATED AMP PEAK  8(12P11.21) WILD-TYPE 
                              2                              11 
                     TCGA-F2-6880                      TCGA-FB-A4P5 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7644                      TCGA-IB-7649 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7885 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7887                      TCGA-IB-7891 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-8126 
"AMP PEAK  8(12P11.21) WILD-TYPE" 
D8V10, continuous
[1] "Remove cluster labels:"        "AMP PEAK  8(12P11.21) MUTATED"
clus
  AMP PEAK  8(12P11.21) MUTATED AMP PEAK  8(12P11.21) WILD-TYPE 
                              2                               8 
                     TCGA-FB-A4P5                      TCGA-H6-8124 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7644                      TCGA-IB-7649 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7885 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-8126 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                                 vv
clus                              R0 R1 RX
  AMP PEAK  8(12P11.21) MUTATED    2  7  1
  AMP PEAK  8(12P11.21) WILD-TYPE 26 13  1
D8V11, multiclass
    clus
vv   AMP PEAK  8(12P11.21) MUTATED AMP PEAK  8(12P11.21) WILD-TYPE
  R0                             2                              26
  R1                             7                              13
  RX                             1                               1
D8V12, continuous

Clustering(9) Variable = AMP PEAK  9(12Q15) MUTATION ANALYSIS
D9V1, survival
                              sevent
clus2                           0  1
  AMP PEAK  9(12Q15) MUTATED    3  2
  AMP PEAK  9(12Q15) WILD-TYPE 29 15
  AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE 
                           5                           44 
  AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE 
                           2                           15 
$`AMP PEAK  9(12Q15) MUTATED`
TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-8005 TCGA-HZ-A4BK TCGA-IB-7646 
       12.89         7.86         3.91         1.51         4.77 

$`AMP PEAK  9(12Q15) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
        0.13         0.03         7.63         0.92         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        12.03         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 
        0.69         0.92         0.49         0.10         0.16         2.96 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 
        0.76         1.02         5.98        11.41        49.38        21.86 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       15.35        19.82        15.65        27.98         4.04         3.58 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.78        19.66        16.04         3.85        15.95 
TCGA-IB-8126 TCGA-IB-8127 
        0.56        17.13 

  AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE 
                        1.51                         0.03 
  AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE 
                       12.89                        49.38 
  AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE 
                        4.77                         5.11 
[1] "1.5 - 12.9 (4.8)" "0.0 - 49.4 (5.1)"
                  TCGA-F2-6879                   TCGA-F2-6880 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-F2-7273                   TCGA-F2-7276 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-F2-A44G                   TCGA-F2-A44H 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-FB-A4P5                   TCGA-FB-A545 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-H6-8124                   TCGA-H6-A45N 
  "AMP PEAK  9(12Q15) MUTATED" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-7289                   TCGA-HZ-7918 
  "AMP PEAK  9(12Q15) MUTATED" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-7919                   TCGA-HZ-7922 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-7923                   TCGA-HZ-7924 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-7925                   TCGA-HZ-7926 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-8001                   TCGA-HZ-8002 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-8003                   TCGA-HZ-8005 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-HZ-8315                   TCGA-HZ-8317 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-8519                   TCGA-HZ-8636 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-8638                   TCGA-HZ-A49G 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-A49H                   TCGA-HZ-A4BH 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-A4BK                   TCGA-IB-7644 
  "AMP PEAK  9(12Q15) MUTATED" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7645                   TCGA-IB-7646 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-IB-7647                   TCGA-IB-7649 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7651                   TCGA-IB-7652 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7885                   TCGA-IB-7886 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7887                   TCGA-IB-7888 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7889                   TCGA-IB-7890 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7891                   TCGA-IB-7893 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7897                   TCGA-IB-8126 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-8127 
"AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-F2-6879                   TCGA-F2-6880 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-F2-7273                   TCGA-F2-7276 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-F2-A44G                   TCGA-F2-A44H 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-FB-A4P5                   TCGA-FB-A545 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-H6-8124                   TCGA-H6-A45N 
  "AMP PEAK  9(12Q15) MUTATED" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-7289                   TCGA-HZ-7918 
  "AMP PEAK  9(12Q15) MUTATED" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-7919                   TCGA-HZ-7922 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-7923                   TCGA-HZ-7924 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-7925                   TCGA-HZ-7926 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-8001                   TCGA-HZ-8002 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-8003                   TCGA-HZ-8005 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-HZ-8315                   TCGA-HZ-8317 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-8519                   TCGA-HZ-8636 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-8638                   TCGA-HZ-A49G 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-A49H                   TCGA-HZ-A4BH 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-A4BK                   TCGA-IB-7644 
  "AMP PEAK  9(12Q15) MUTATED" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7645                   TCGA-IB-7646 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-IB-7647                   TCGA-IB-7649 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7651                   TCGA-IB-7652 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7885                   TCGA-IB-7886 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7887                   TCGA-IB-7888 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7889                   TCGA-IB-7890 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7891                   TCGA-IB-7893 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7897                   TCGA-IB-8126 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-8127 
"AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-F2-6879                   TCGA-F2-6880 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-F2-7273                   TCGA-F2-7276 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-F2-A44G                   TCGA-F2-A44H 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-FB-A4P5                   TCGA-FB-A545 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-H6-8124                   TCGA-H6-A45N 
  "AMP PEAK  9(12Q15) MUTATED" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-7289                   TCGA-HZ-7918 
  "AMP PEAK  9(12Q15) MUTATED" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-7919                   TCGA-HZ-7922 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-7923                   TCGA-HZ-7924 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-7925                   TCGA-HZ-7926 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-8001                   TCGA-HZ-8002 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-8003                   TCGA-HZ-8005 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-HZ-8315                   TCGA-HZ-8317 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-8519                   TCGA-HZ-8636 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-8638                   TCGA-HZ-A49G 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-A49H                   TCGA-HZ-A4BH 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-A4BK                   TCGA-IB-7644 
  "AMP PEAK  9(12Q15) MUTATED" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7645                   TCGA-IB-7646 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-IB-7647                   TCGA-IB-7649 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7651                   TCGA-IB-7652 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7885                   TCGA-IB-7886 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7887                   TCGA-IB-7888 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7889                   TCGA-IB-7890 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7891                   TCGA-IB-7893 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7897                   TCGA-IB-8126 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-8127 
"AMP PEAK  9(12Q15) WILD-TYPE" 
[1] "hr=" "2.5"
D9V2, continuous
                              vv
clus                           STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  AMP PEAK  9(12Q15) MUTATED          0        0         0         6         0
  AMP PEAK  9(12Q15) WILD-TYPE        2        2         6        32         2
                              vv
clus                           STAGE IV
  AMP PEAK  9(12Q15) MUTATED          0
  AMP PEAK  9(12Q15) WILD-TYPE        2
D9V3, multiclass
                              vv
clus                           T1+T2 T3+T4
  AMP PEAK  9(12Q15) MUTATED       0     6
  AMP PEAK  9(12Q15) WILD-TYPE     5    41
D9V4, multiclass
       clus
vv      AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE
  T1+T2                          0                            5
  T3+T4                          6                           41
D9V5, binary
                              cls
clus                            0  1
  AMP PEAK  9(12Q15) MUTATED    0  6
  AMP PEAK  9(12Q15) WILD-TYPE 12 34
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK  9(12Q15) MUTATED      0    6
  AMP PEAK  9(12Q15) WILD-TYPE   12   34
   clus
vv  AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE
  0                          0                           12
  1                          6                           34
                              vv
clus                           M0 M1 MX
  AMP PEAK  9(12Q15) MUTATED    2  0  4
  AMP PEAK  9(12Q15) WILD-TYPE 25  2 19
D9V6, multiclass
    clus
vv   AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE
  M0                          2                           25
  M1                          0                            2
  MX                          4                           19
D9V7, binary
                              cls
clus                            0  1
  AMP PEAK  9(12Q15) MUTATED    1  5
  AMP PEAK  9(12Q15) WILD-TYPE 27 19
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK  9(12Q15) MUTATED      1    5
  AMP PEAK  9(12Q15) WILD-TYPE   27   19
        clus
vv       AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE
  FEMALE                          1                           27
  MALE                            5                           19
                              vv
clus                           PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  9(12Q15) MUTATED                                     4
  AMP PEAK  9(12Q15) WILD-TYPE                                  42
                              vv
clus                           PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  9(12Q15) MUTATED                                       2
  AMP PEAK  9(12Q15) WILD-TYPE                                     2
                              vv
clus                           PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  9(12Q15) MUTATED                                                  0
  AMP PEAK  9(12Q15) WILD-TYPE                                                1
D9V8, multiclass
                                                  clus
vv                                                 AMP PEAK  9(12Q15) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                       4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                     2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                          0
                                                  clus
vv                                                 AMP PEAK  9(12Q15) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        42
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            1
D9V9, continuous
[1] "Remove cluster labels:"     "AMP PEAK  9(12Q15) MUTATED"
clus
  AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE 
                           1                           12 
                  TCGA-F2-6880                   TCGA-FB-A4P5 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-H6-A45N                   TCGA-IB-7644 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7649                   TCGA-IB-7651 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7885                   TCGA-IB-7886 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7887                   TCGA-IB-7891 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-8126                   TCGA-IB-8127 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
D9V10, continuous
[1] "Remove cluster labels:"     "AMP PEAK  9(12Q15) MUTATED"
clus
  AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE 
                           1                            9 
                  TCGA-FB-A4P5                   TCGA-IB-7644 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7649                   TCGA-IB-7651 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7885                   TCGA-IB-7886 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7891                   TCGA-IB-8126 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-8127 
"AMP PEAK  9(12Q15) WILD-TYPE" 
                              vv
clus                           R0 R1 RX
  AMP PEAK  9(12Q15) MUTATED    1  4  1
  AMP PEAK  9(12Q15) WILD-TYPE 27 16  1
D9V11, multiclass
    clus
vv   AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE
  R0                          1                           27
  R1                          4                           16
  RX                          1                            1
D9V12, continuous

Clustering(10) Variable = AMP PEAK 10(17P11.2) MUTATION ANALYSIS
D10V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 10(17P11.2) MUTATED    1  1
  AMP PEAK 10(17P11.2) WILD-TYPE 31 16
  AMP PEAK 10(17P11.2) MUTATED AMP PEAK 10(17P11.2) WILD-TYPE 
                             2                             47 
  AMP PEAK 10(17P11.2) MUTATED AMP PEAK 10(17P11.2) WILD-TYPE 
                             1                             16 
$`AMP PEAK 10(17P11.2) MUTATED`
TCGA-FB-A545 TCGA-IB-7889 
        0.03        15.78 

$`AMP PEAK 10(17P11.2) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
        0.13        12.89         7.63         7.86         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        12.03         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.99         0.69         3.91         0.92         0.49         0.10 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.96         0.76         1.02         5.98         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.86        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 
       15.65        27.98         4.04         3.58        43.79        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       16.04         3.85        15.95         0.56        17.13 

  AMP PEAK 10(17P11.2) MUTATED AMP PEAK 10(17P11.2) WILD-TYPE 
                          0.03                           0.10 
  AMP PEAK 10(17P11.2) MUTATED AMP PEAK 10(17P11.2) WILD-TYPE 
                         15.78                          49.38 
  AMP PEAK 10(17P11.2) MUTATED AMP PEAK 10(17P11.2) WILD-TYPE 
                         7.905                          5.030 
[1] "0.0 - 15.8 (7.9)" "0.1 - 49.4 (5.0)"
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 10(17P11.2) WILD-TYPE"   "AMP PEAK 10(17P11.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "AMP PEAK 10(17P11.2) MUTATED" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-8127 
"AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 10(17P11.2) WILD-TYPE"   "AMP PEAK 10(17P11.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "AMP PEAK 10(17P11.2) MUTATED" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-8127 
"AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 10(17P11.2) WILD-TYPE"   "AMP PEAK 10(17P11.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "AMP PEAK 10(17P11.2) MUTATED" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-8127 
"AMP PEAK 10(17P11.2) WILD-TYPE" 
[1] "Remove cluster labels:"       "AMP PEAK 10(17P11.2) MUTATED"
clus
  AMP PEAK 10(17P11.2) MUTATED AMP PEAK 10(17P11.2) WILD-TYPE 
                             2                             47 
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-H6-8124 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-H6-A45N                     TCGA-HZ-7289 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7890 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-8127 
"AMP PEAK 10(17P11.2) WILD-TYPE" 
D10V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK 10(17P11.2) MUTATED          0        0         0         3
  AMP PEAK 10(17P11.2) WILD-TYPE        2        2         6        35
                                vv
clus                             STAGE III STAGE IV
  AMP PEAK 10(17P11.2) MUTATED           0        0
  AMP PEAK 10(17P11.2) WILD-TYPE         2        2
D10V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  AMP PEAK 10(17P11.2) MUTATED       0     3
  AMP PEAK 10(17P11.2) WILD-TYPE     5    44
D10V4, multiclass
       clus
vv      AMP PEAK 10(17P11.2) MUTATED AMP PEAK 10(17P11.2) WILD-TYPE
  T1+T2                            0                              5
  T3+T4                            3                             44
D10V5, binary
                                cls
clus                              0  1
  AMP PEAK 10(17P11.2) MUTATED    0  3
  AMP PEAK 10(17P11.2) WILD-TYPE 12 37
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(17P11.2) MUTATED      0    3
  AMP PEAK 10(17P11.2) WILD-TYPE   12   37
   clus
vv  AMP PEAK 10(17P11.2) MUTATED AMP PEAK 10(17P11.2) WILD-TYPE
  0                            0                             12
  1                            3                             37
                                vv
clus                             M0 M1 MX
  AMP PEAK 10(17P11.2) MUTATED    2  0  1
  AMP PEAK 10(17P11.2) WILD-TYPE 25  2 22
D10V6, multiclass
    clus
vv   AMP PEAK 10(17P11.2) MUTATED AMP PEAK 10(17P11.2) WILD-TYPE
  M0                            2                             25
  M1                            0                              2
  MX                            1                             22
D10V7, binary
                                cls
clus                              0  1
  AMP PEAK 10(17P11.2) MUTATED    2  1
  AMP PEAK 10(17P11.2) WILD-TYPE 26 23
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(17P11.2) MUTATED      2    1
  AMP PEAK 10(17P11.2) WILD-TYPE   26   23
        clus
vv       AMP PEAK 10(17P11.2) MUTATED AMP PEAK 10(17P11.2) WILD-TYPE
  FEMALE                            2                             26
  MALE                              1                             23
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK 10(17P11.2) MUTATED                                     3
  AMP PEAK 10(17P11.2) WILD-TYPE                                  43
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK 10(17P11.2) MUTATED                                       0
  AMP PEAK 10(17P11.2) WILD-TYPE                                     4
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK 10(17P11.2) MUTATED                                                  0
  AMP PEAK 10(17P11.2) WILD-TYPE                                                1
D10V8, multiclass
                                                  clus
vv                                                 AMP PEAK 10(17P11.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 AMP PEAK 10(17P11.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          43
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D10V9, continuous
D10V10, continuous
                                vv
clus                             R0 R1 RX
  AMP PEAK 10(17P11.2) MUTATED    1  1  0
  AMP PEAK 10(17P11.2) WILD-TYPE 27 19  2
D10V11, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 10(17P11.2) MUTATED"
clus
  AMP PEAK 10(17P11.2) MUTATED AMP PEAK 10(17P11.2) WILD-TYPE 
                             2                             48 
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-H6-8124 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7920 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8637 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
D10V12, continuous

Clustering(11) Variable = AMP PEAK 11(17Q21.33) MUTATION ANALYSIS
D11V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 11(17Q21.33) MUTATED    3  4
  AMP PEAK 11(17Q21.33) WILD-TYPE 29 13
  AMP PEAK 11(17Q21.33) MUTATED AMP PEAK 11(17Q21.33) WILD-TYPE 
                              7                              42 
  AMP PEAK 11(17Q21.33) MUTATED AMP PEAK 11(17Q21.33) WILD-TYPE 
                              4                              13 
$`AMP PEAK 11(17Q21.33) MUTATED`
TCGA-HZ-7922 TCGA-HZ-A4BH TCGA-IB-7646 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7891 
        0.13         5.98         4.77         3.58        43.79        16.04 
TCGA-IB-7893 
        3.85 

$`AMP PEAK 11(17Q21.33) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
        0.13         0.03        12.89         7.63         7.86         0.92 
TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.66         0.26        12.13        12.03         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.99         0.69         3.91         0.92         0.49         0.10 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.96         0.76         1.02         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
       49.38        21.86        15.35        19.82        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
        4.04        15.78        19.66        15.95         0.56        17.13 

  AMP PEAK 11(17Q21.33) MUTATED AMP PEAK 11(17Q21.33) WILD-TYPE 
                           0.13                            0.03 
  AMP PEAK 11(17Q21.33) MUTATED AMP PEAK 11(17Q21.33) WILD-TYPE 
                          43.79                           49.38 
  AMP PEAK 11(17Q21.33) MUTATED AMP PEAK 11(17Q21.33) WILD-TYPE 
                           4.77                            5.11 
[1] "0.1 - 43.8 (4.8)" "0.0 - 49.4 (5.1)"
                     TCGA-F2-6879                      TCGA-F2-6880 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"AMP PEAK 11(17Q21.33) WILD-TYPE"   "AMP PEAK 11(17Q21.33) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"AMP PEAK 11(17Q21.33) WILD-TYPE"   "AMP PEAK 11(17Q21.33) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"AMP PEAK 11(17Q21.33) WILD-TYPE"   "AMP PEAK 11(17Q21.33) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-IB-7887                      TCGA-IB-7888 
  "AMP PEAK 11(17Q21.33) MUTATED"   "AMP PEAK 11(17Q21.33) MUTATED" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
  "AMP PEAK 11(17Q21.33) MUTATED"   "AMP PEAK 11(17Q21.33) MUTATED" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-IB-8127 
"AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"AMP PEAK 11(17Q21.33) WILD-TYPE"   "AMP PEAK 11(17Q21.33) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"AMP PEAK 11(17Q21.33) WILD-TYPE"   "AMP PEAK 11(17Q21.33) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"AMP PEAK 11(17Q21.33) WILD-TYPE"   "AMP PEAK 11(17Q21.33) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-IB-7887                      TCGA-IB-7888 
  "AMP PEAK 11(17Q21.33) MUTATED"   "AMP PEAK 11(17Q21.33) MUTATED" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
  "AMP PEAK 11(17Q21.33) MUTATED"   "AMP PEAK 11(17Q21.33) MUTATED" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-IB-8127 
"AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"AMP PEAK 11(17Q21.33) WILD-TYPE"   "AMP PEAK 11(17Q21.33) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"AMP PEAK 11(17Q21.33) WILD-TYPE"   "AMP PEAK 11(17Q21.33) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"AMP PEAK 11(17Q21.33) WILD-TYPE"   "AMP PEAK 11(17Q21.33) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-IB-7887                      TCGA-IB-7888 
  "AMP PEAK 11(17Q21.33) MUTATED"   "AMP PEAK 11(17Q21.33) MUTATED" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
  "AMP PEAK 11(17Q21.33) MUTATED"   "AMP PEAK 11(17Q21.33) MUTATED" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-IB-8127 
"AMP PEAK 11(17Q21.33) WILD-TYPE" 
[1] "hr=" "1.5"
D11V2, continuous
                                 vv
clus                              STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK 11(17Q21.33) MUTATED          0        0         2         5
  AMP PEAK 11(17Q21.33) WILD-TYPE        2        2         4        33
                                 vv
clus                              STAGE III STAGE IV
  AMP PEAK 11(17Q21.33) MUTATED           0        0
  AMP PEAK 11(17Q21.33) WILD-TYPE         2        2
D11V3, multiclass
                                 vv
clus                              T1+T2 T3+T4
  AMP PEAK 11(17Q21.33) MUTATED       0     7
  AMP PEAK 11(17Q21.33) WILD-TYPE     5    40
D11V4, multiclass
       clus
vv      AMP PEAK 11(17Q21.33) MUTATED AMP PEAK 11(17Q21.33) WILD-TYPE
  T1+T2                             0                               5
  T3+T4                             7                              40
D11V5, binary
                                 cls
clus                               0  1
  AMP PEAK 11(17Q21.33) MUTATED    2  5
  AMP PEAK 11(17Q21.33) WILD-TYPE 10 35
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 11(17Q21.33) MUTATED      2    5
  AMP PEAK 11(17Q21.33) WILD-TYPE   10   35
   clus
vv  AMP PEAK 11(17Q21.33) MUTATED AMP PEAK 11(17Q21.33) WILD-TYPE
  0                             2                              10
  1                             5                              35
                                 vv
clus                              M0 M1 MX
  AMP PEAK 11(17Q21.33) MUTATED    5  0  2
  AMP PEAK 11(17Q21.33) WILD-TYPE 22  2 21
D11V6, multiclass
    clus
vv   AMP PEAK 11(17Q21.33) MUTATED AMP PEAK 11(17Q21.33) WILD-TYPE
  M0                             5                              22
  M1                             0                               2
  MX                             2                              21
D11V7, binary
                                 cls
clus                               0  1
  AMP PEAK 11(17Q21.33) MUTATED    3  4
  AMP PEAK 11(17Q21.33) WILD-TYPE 25 20
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 11(17Q21.33) MUTATED      3    4
  AMP PEAK 11(17Q21.33) WILD-TYPE   25   20
        clus
vv       AMP PEAK 11(17Q21.33) MUTATED AMP PEAK 11(17Q21.33) WILD-TYPE
  FEMALE                             3                              25
  MALE                               4                              20
                                 vv
clus                              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK 11(17Q21.33) MUTATED                                     7
  AMP PEAK 11(17Q21.33) WILD-TYPE                                  39
                                 vv
clus                              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK 11(17Q21.33) MUTATED                                       0
  AMP PEAK 11(17Q21.33) WILD-TYPE                                     4
                                 vv
clus                              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK 11(17Q21.33) MUTATED                                                  0
  AMP PEAK 11(17Q21.33) WILD-TYPE                                                1
D11V8, multiclass
                                                  clus
vv                                                 AMP PEAK 11(17Q21.33) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             0
                                                  clus
vv                                                 AMP PEAK 11(17Q21.33) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                           39
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                               1
D11V9, continuous
[1] "Remove cluster labels:"        "AMP PEAK 11(17Q21.33) MUTATED"
clus
  AMP PEAK 11(17Q21.33) MUTATED AMP PEAK 11(17Q21.33) WILD-TYPE 
                              2                              11 
                     TCGA-F2-6880                      TCGA-FB-A4P5 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-IB-7644                      TCGA-IB-7649 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7885 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-IB-7886                      TCGA-IB-8126 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-IB-8127 
"AMP PEAK 11(17Q21.33) WILD-TYPE" 
D11V10, continuous
[1] "Remove cluster labels:"        "AMP PEAK 11(17Q21.33) MUTATED"
clus
  AMP PEAK 11(17Q21.33) MUTATED AMP PEAK 11(17Q21.33) WILD-TYPE 
                              1                               9 
                     TCGA-FB-A4P5                      TCGA-H6-8124 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-IB-7644                      TCGA-IB-7649 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7885 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-IB-7886                      TCGA-IB-8126 
"AMP PEAK 11(17Q21.33) WILD-TYPE" "AMP PEAK 11(17Q21.33) WILD-TYPE" 
                     TCGA-IB-8127 
"AMP PEAK 11(17Q21.33) WILD-TYPE" 
                                 vv
clus                              R0 R1 RX
  AMP PEAK 11(17Q21.33) MUTATED    4  3  0
  AMP PEAK 11(17Q21.33) WILD-TYPE 24 17  2
D11V11, multiclass
    clus
vv   AMP PEAK 11(17Q21.33) MUTATED AMP PEAK 11(17Q21.33) WILD-TYPE
  R0                             4                              24
  R1                             3                              17
  RX                             0                               2
D11V12, continuous

Clustering(12) Variable = AMP PEAK 12(18Q11.2) MUTATION ANALYSIS
D12V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 12(18Q11.2) MUTATED   10  4
  AMP PEAK 12(18Q11.2) WILD-TYPE 22 13
  AMP PEAK 12(18Q11.2) MUTATED AMP PEAK 12(18Q11.2) WILD-TYPE 
                            14                             35 
  AMP PEAK 12(18Q11.2) MUTATED AMP PEAK 12(18Q11.2) WILD-TYPE 
                             4                             13 
$`AMP PEAK 12(18Q11.2) MUTATED`
TCGA-F2-6879 TCGA-F2-A44G TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-7919 TCGA-HZ-7925 
       10.98         5.03         0.03        12.89         0.66        12.03 
TCGA-HZ-8636 TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7649 TCGA-IB-7886 TCGA-IB-7893 
        0.16         1.51        11.41        15.35         4.04         3.85 
TCGA-IB-8126 TCGA-IB-8127 
        0.56        17.13 

$`AMP PEAK 12(18Q11.2) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A4P5 TCGA-H6-A45N 
        9.96        11.84         7.07         5.19         0.13         7.63 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 
        7.86         0.92         0.13         0.26        12.13         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.99         0.69         3.91         0.92         0.49 
TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7645 
        0.10         2.96         0.76         1.02         5.98        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7887 
        4.77        21.86        19.82        15.65        27.98         3.58 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 
       43.79        15.78        19.66        16.04        15.95 

  AMP PEAK 12(18Q11.2) MUTATED AMP PEAK 12(18Q11.2) WILD-TYPE 
                          0.03                           0.10 
  AMP PEAK 12(18Q11.2) MUTATED AMP PEAK 12(18Q11.2) WILD-TYPE 
                         17.13                          49.38 
  AMP PEAK 12(18Q11.2) MUTATED AMP PEAK 12(18Q11.2) WILD-TYPE 
                         4.535                          5.190 
[1] "0.0 - 17.1 (4.5)" "0.1 - 49.4 (5.2)"
                    TCGA-F2-6879                     TCGA-F2-6880 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "AMP PEAK 12(18Q11.2) MUTATED"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-IB-8127 
  "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "AMP PEAK 12(18Q11.2) MUTATED"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-IB-8127 
  "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "AMP PEAK 12(18Q11.2) MUTATED"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-IB-8127 
  "AMP PEAK 12(18Q11.2) MUTATED" 
[1] "hr=" "1.5"
D12V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK 12(18Q11.2) MUTATED          0        0         1        10
  AMP PEAK 12(18Q11.2) WILD-TYPE        2        2         5        28
                                vv
clus                             STAGE III STAGE IV
  AMP PEAK 12(18Q11.2) MUTATED           1        2
  AMP PEAK 12(18Q11.2) WILD-TYPE         1        0
D12V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  AMP PEAK 12(18Q11.2) MUTATED       0    14
  AMP PEAK 12(18Q11.2) WILD-TYPE     5    33
D12V4, multiclass
       clus
vv      AMP PEAK 12(18Q11.2) MUTATED AMP PEAK 12(18Q11.2) WILD-TYPE
  T1+T2                            0                              5
  T3+T4                           14                             33
D12V5, binary
                                cls
clus                              0  1
  AMP PEAK 12(18Q11.2) MUTATED    2 12
  AMP PEAK 12(18Q11.2) WILD-TYPE 10 28
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(18Q11.2) MUTATED      2   12
  AMP PEAK 12(18Q11.2) WILD-TYPE   10   28
   clus
vv  AMP PEAK 12(18Q11.2) MUTATED AMP PEAK 12(18Q11.2) WILD-TYPE
  0                            2                             10
  1                           12                             28
                                vv
clus                             M0 M1 MX
  AMP PEAK 12(18Q11.2) MUTATED   10  2  2
  AMP PEAK 12(18Q11.2) WILD-TYPE 17  0 21
D12V6, multiclass
    clus
vv   AMP PEAK 12(18Q11.2) MUTATED AMP PEAK 12(18Q11.2) WILD-TYPE
  M0                           10                             17
  M1                            2                              0
  MX                            2                             21
D12V7, binary
                                cls
clus                              0  1
  AMP PEAK 12(18Q11.2) MUTATED    8  6
  AMP PEAK 12(18Q11.2) WILD-TYPE 20 18
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(18Q11.2) MUTATED      8    6
  AMP PEAK 12(18Q11.2) WILD-TYPE   20   18
        clus
vv       AMP PEAK 12(18Q11.2) MUTATED AMP PEAK 12(18Q11.2) WILD-TYPE
  FEMALE                            8                             20
  MALE                              6                             18
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK 12(18Q11.2) MUTATED                                    12
  AMP PEAK 12(18Q11.2) WILD-TYPE                                  34
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK 12(18Q11.2) MUTATED                                       1
  AMP PEAK 12(18Q11.2) WILD-TYPE                                     3
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK 12(18Q11.2) MUTATED                                                  0
  AMP PEAK 12(18Q11.2) WILD-TYPE                                                1
D12V8, multiclass
                                                  clus
vv                                                 AMP PEAK 12(18Q11.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        12
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 AMP PEAK 12(18Q11.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          34
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D12V9, continuous
D12V10, continuous
                                vv
clus                             R0 R1 RX
  AMP PEAK 12(18Q11.2) MUTATED    4  9  0
  AMP PEAK 12(18Q11.2) WILD-TYPE 24 11  2
D12V11, multiclass
    clus
vv   AMP PEAK 12(18Q11.2) MUTATED AMP PEAK 12(18Q11.2) WILD-TYPE
  R0                            4                             24
  R1                            9                             11
  RX                            0                              2
D12V12, continuous

Clustering(13) Variable = AMP PEAK 13(19Q13.13) MUTATION ANALYSIS
D13V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 13(19Q13.13) MUTATED    7  2
  AMP PEAK 13(19Q13.13) WILD-TYPE 25 15
  AMP PEAK 13(19Q13.13) MUTATED AMP PEAK 13(19Q13.13) WILD-TYPE 
                              9                              40 
  AMP PEAK 13(19Q13.13) MUTATED AMP PEAK 13(19Q13.13) WILD-TYPE 
                              2                              15 
$`AMP PEAK 13(19Q13.13) MUTATED`
TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-7922 TCGA-HZ-8001 TCGA-HZ-A4BH TCGA-IB-7886 
        0.03        12.89         0.13         0.62         5.98         4.04 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8127 
       16.04         3.85        17.13 

$`AMP PEAK 13(19Q13.13) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7923 
        0.13         7.63         7.86         0.92         0.66         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       12.13        12.03         0.26         0.99         0.69         3.91 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.92         0.49         0.10         0.16         2.96         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        1.02         1.51        11.41        49.38         4.77        21.86 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 
       15.35        19.82        15.65        27.98         3.58        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7897 TCGA-IB-8126 
       15.78        19.66        15.95         0.56 

  AMP PEAK 13(19Q13.13) MUTATED AMP PEAK 13(19Q13.13) WILD-TYPE 
                           0.03                            0.10 
  AMP PEAK 13(19Q13.13) MUTATED AMP PEAK 13(19Q13.13) WILD-TYPE 
                          17.13                           49.38 
  AMP PEAK 13(19Q13.13) MUTATED AMP PEAK 13(19Q13.13) WILD-TYPE 
                           4.04                            5.11 
[1] "0.0 - 17.1 (4.0)" "0.1 - 49.4 (5.1)"
                     TCGA-F2-6879                      TCGA-F2-6880 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"AMP PEAK 13(19Q13.13) WILD-TYPE"   "AMP PEAK 13(19Q13.13) MUTATED" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
  "AMP PEAK 13(19Q13.13) MUTATED" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"AMP PEAK 13(19Q13.13) WILD-TYPE"   "AMP PEAK 13(19Q13.13) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
  "AMP PEAK 13(19Q13.13) MUTATED" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"AMP PEAK 13(19Q13.13) WILD-TYPE"   "AMP PEAK 13(19Q13.13) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
"AMP PEAK 13(19Q13.13) WILD-TYPE"   "AMP PEAK 13(19Q13.13) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
  "AMP PEAK 13(19Q13.13) MUTATED"   "AMP PEAK 13(19Q13.13) MUTATED" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-IB-8127 
  "AMP PEAK 13(19Q13.13) MUTATED" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"AMP PEAK 13(19Q13.13) WILD-TYPE"   "AMP PEAK 13(19Q13.13) MUTATED" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
  "AMP PEAK 13(19Q13.13) MUTATED" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"AMP PEAK 13(19Q13.13) WILD-TYPE"   "AMP PEAK 13(19Q13.13) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
  "AMP PEAK 13(19Q13.13) MUTATED" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"AMP PEAK 13(19Q13.13) WILD-TYPE"   "AMP PEAK 13(19Q13.13) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
"AMP PEAK 13(19Q13.13) WILD-TYPE"   "AMP PEAK 13(19Q13.13) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
  "AMP PEAK 13(19Q13.13) MUTATED"   "AMP PEAK 13(19Q13.13) MUTATED" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-IB-8127 
  "AMP PEAK 13(19Q13.13) MUTATED" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"AMP PEAK 13(19Q13.13) WILD-TYPE"   "AMP PEAK 13(19Q13.13) MUTATED" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
  "AMP PEAK 13(19Q13.13) MUTATED" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"AMP PEAK 13(19Q13.13) WILD-TYPE"   "AMP PEAK 13(19Q13.13) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
  "AMP PEAK 13(19Q13.13) MUTATED" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"AMP PEAK 13(19Q13.13) WILD-TYPE"   "AMP PEAK 13(19Q13.13) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
"AMP PEAK 13(19Q13.13) WILD-TYPE"   "AMP PEAK 13(19Q13.13) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
  "AMP PEAK 13(19Q13.13) MUTATED"   "AMP PEAK 13(19Q13.13) MUTATED" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"AMP PEAK 13(19Q13.13) WILD-TYPE" "AMP PEAK 13(19Q13.13) WILD-TYPE" 
                     TCGA-IB-8127 
  "AMP PEAK 13(19Q13.13) MUTATED" 
[1] "hr=" "1.1"
D13V2, continuous
                                 vv
clus                              STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK 13(19Q13.13) MUTATED          0        0         1         8
  AMP PEAK 13(19Q13.13) WILD-TYPE        2        2         5        30
                                 vv
clus                              STAGE III STAGE IV
  AMP PEAK 13(19Q13.13) MUTATED           1        0
  AMP PEAK 13(19Q13.13) WILD-TYPE         1        2
D13V3, multiclass
                                 vv
clus                              T1+T2 T3+T4
  AMP PEAK 13(19Q13.13) MUTATED       0    10
  AMP PEAK 13(19Q13.13) WILD-TYPE     5    37
D13V4, multiclass
       clus
vv      AMP PEAK 13(19Q13.13) MUTATED AMP PEAK 13(19Q13.13) WILD-TYPE
  T1+T2                             0                               5
  T3+T4                            10                              37
D13V5, binary
                                 cls
clus                               0  1
  AMP PEAK 13(19Q13.13) MUTATED    2  8
  AMP PEAK 13(19Q13.13) WILD-TYPE 10 32
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 13(19Q13.13) MUTATED      2    8
  AMP PEAK 13(19Q13.13) WILD-TYPE   10   32
   clus
vv  AMP PEAK 13(19Q13.13) MUTATED AMP PEAK 13(19Q13.13) WILD-TYPE
  0                             2                              10
  1                             8                              32
                                 vv
clus                              M0 M1 MX
  AMP PEAK 13(19Q13.13) MUTATED    6  0  4
  AMP PEAK 13(19Q13.13) WILD-TYPE 21  2 19
D13V6, multiclass
    clus
vv   AMP PEAK 13(19Q13.13) MUTATED AMP PEAK 13(19Q13.13) WILD-TYPE
  M0                             6                              21
  M1                             0                               2
  MX                             4                              19
D13V7, binary
                                 cls
clus                               0  1
  AMP PEAK 13(19Q13.13) MUTATED    3  7
  AMP PEAK 13(19Q13.13) WILD-TYPE 25 17
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 13(19Q13.13) MUTATED      3    7
  AMP PEAK 13(19Q13.13) WILD-TYPE   25   17
        clus
vv       AMP PEAK 13(19Q13.13) MUTATED AMP PEAK 13(19Q13.13) WILD-TYPE
  FEMALE                             3                              25
  MALE                               7                              17
                                 vv
clus                              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK 13(19Q13.13) MUTATED                                    10
  AMP PEAK 13(19Q13.13) WILD-TYPE                                  36
                                 vv
clus                              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK 13(19Q13.13) MUTATED                                       0
  AMP PEAK 13(19Q13.13) WILD-TYPE                                     4
                                 vv
clus                              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK 13(19Q13.13) MUTATED                                                  0
  AMP PEAK 13(19Q13.13) WILD-TYPE                                                1
D13V8, multiclass
                                                  clus
vv                                                 AMP PEAK 13(19Q13.13) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         10
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             0
                                                  clus
vv                                                 AMP PEAK 13(19Q13.13) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                           36
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                               1
D13V9, continuous
D13V10, continuous
                                 vv
clus                              R0 R1 RX
  AMP PEAK 13(19Q13.13) MUTATED    5  4  0
  AMP PEAK 13(19Q13.13) WILD-TYPE 23 16  2
D13V11, multiclass
    clus
vv   AMP PEAK 13(19Q13.13) MUTATED AMP PEAK 13(19Q13.13) WILD-TYPE
  R0                             5                              23
  R1                             4                              16
  RX                             0                               2
D13V12, continuous

Clustering(14) Variable = AMP PEAK 14(20Q13.2) MUTATION ANALYSIS
D14V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 14(20Q13.2) MUTATED    6  6
  AMP PEAK 14(20Q13.2) WILD-TYPE 26 11
  AMP PEAK 14(20Q13.2) MUTATED AMP PEAK 14(20Q13.2) WILD-TYPE 
                            12                             37 
  AMP PEAK 14(20Q13.2) MUTATED AMP PEAK 14(20Q13.2) WILD-TYPE 
                             6                             11 
$`AMP PEAK 14(20Q13.2) MUTATED`
TCGA-F2-6879 TCGA-FB-A545 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-8005 
       10.98         0.03         7.86         0.92         0.13         3.91 
TCGA-HZ-A4BK TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7886 TCGA-IB-7890 TCGA-IB-8127 
        1.51         4.77        21.86         4.04        19.66        17.13 

$`AMP PEAK 14(20Q13.2) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.96        11.84         7.07         5.03         5.19         0.13 
TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
       12.89         7.63         0.66         0.26        12.13        12.03 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.99         0.69         0.92         0.49 
TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.10         0.16         2.96         0.76         1.02         5.98 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
       11.41        49.38        15.35        19.82        15.65        27.98 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
        3.58        43.79        15.78        16.04         3.85        15.95 
TCGA-IB-8126 
        0.56 

  AMP PEAK 14(20Q13.2) MUTATED AMP PEAK 14(20Q13.2) WILD-TYPE 
                          0.03                           0.10 
  AMP PEAK 14(20Q13.2) MUTATED AMP PEAK 14(20Q13.2) WILD-TYPE 
                         21.86                          49.38 
  AMP PEAK 14(20Q13.2) MUTATED AMP PEAK 14(20Q13.2) WILD-TYPE 
                         4.405                          5.190 
[1] "0.0 - 21.9 (4.4)" "0.1 - 49.4 (5.2)"
                    TCGA-F2-6879                     TCGA-F2-6880 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "AMP PEAK 14(20Q13.2) MUTATED"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-8127 
  "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "AMP PEAK 14(20Q13.2) MUTATED"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-8127 
  "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "AMP PEAK 14(20Q13.2) MUTATED"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-8127 
  "AMP PEAK 14(20Q13.2) MUTATED" 
[1] "hr=" "1.9"
D14V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK 14(20Q13.2) MUTATED          0        1         0        12
  AMP PEAK 14(20Q13.2) WILD-TYPE        2        1         6        26
                                vv
clus                             STAGE III STAGE IV
  AMP PEAK 14(20Q13.2) MUTATED           0        0
  AMP PEAK 14(20Q13.2) WILD-TYPE         2        2
D14V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  AMP PEAK 14(20Q13.2) MUTATED       1    12
  AMP PEAK 14(20Q13.2) WILD-TYPE     4    35
D14V4, multiclass
       clus
vv      AMP PEAK 14(20Q13.2) MUTATED AMP PEAK 14(20Q13.2) WILD-TYPE
  T1+T2                            1                              4
  T3+T4                           12                             35
D14V5, binary
                                cls
clus                              0  1
  AMP PEAK 14(20Q13.2) MUTATED    1 12
  AMP PEAK 14(20Q13.2) WILD-TYPE 11 28
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(20Q13.2) MUTATED      1   12
  AMP PEAK 14(20Q13.2) WILD-TYPE   11   28
   clus
vv  AMP PEAK 14(20Q13.2) MUTATED AMP PEAK 14(20Q13.2) WILD-TYPE
  0                            1                             11
  1                           12                             28
                                vv
clus                             M0 M1 MX
  AMP PEAK 14(20Q13.2) MUTATED    8  0  5
  AMP PEAK 14(20Q13.2) WILD-TYPE 19  2 18
D14V6, multiclass
    clus
vv   AMP PEAK 14(20Q13.2) MUTATED AMP PEAK 14(20Q13.2) WILD-TYPE
  M0                            8                             19
  M1                            0                              2
  MX                            5                             18
D14V7, binary
                                cls
clus                              0  1
  AMP PEAK 14(20Q13.2) MUTATED    4  9
  AMP PEAK 14(20Q13.2) WILD-TYPE 24 15
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(20Q13.2) MUTATED      4    9
  AMP PEAK 14(20Q13.2) WILD-TYPE   24   15
        clus
vv       AMP PEAK 14(20Q13.2) MUTATED AMP PEAK 14(20Q13.2) WILD-TYPE
  FEMALE                            4                             24
  MALE                              9                             15
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK 14(20Q13.2) MUTATED                                    10
  AMP PEAK 14(20Q13.2) WILD-TYPE                                  36
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK 14(20Q13.2) MUTATED                                       2
  AMP PEAK 14(20Q13.2) WILD-TYPE                                     2
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK 14(20Q13.2) MUTATED                                                  0
  AMP PEAK 14(20Q13.2) WILD-TYPE                                                1
D14V8, multiclass
                                                  clus
vv                                                 AMP PEAK 14(20Q13.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        10
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 AMP PEAK 14(20Q13.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          36
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D14V9, continuous
[1] "Remove cluster labels:"       "AMP PEAK 14(20Q13.2) MUTATED"
clus
  AMP PEAK 14(20Q13.2) MUTATED AMP PEAK 14(20Q13.2) WILD-TYPE 
                             2                             11 
                    TCGA-F2-6880                     TCGA-FB-A4P5 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7649 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7885 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7891 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-8126 
"AMP PEAK 14(20Q13.2) WILD-TYPE" 
D14V10, continuous
[1] "Remove cluster labels:"       "AMP PEAK 14(20Q13.2) MUTATED"
clus
  AMP PEAK 14(20Q13.2) MUTATED AMP PEAK 14(20Q13.2) WILD-TYPE 
                             2                              8 
                    TCGA-FB-A4P5                     TCGA-H6-8124 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7649 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7885 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-8126 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                                vv
clus                             R0 R1 RX
  AMP PEAK 14(20Q13.2) MUTATED    5  6  1
  AMP PEAK 14(20Q13.2) WILD-TYPE 23 14  1
D14V11, multiclass
    clus
vv   AMP PEAK 14(20Q13.2) MUTATED AMP PEAK 14(20Q13.2) WILD-TYPE
  R0                            5                             23
  R1                            6                             14
  RX                            1                              1
D14V12, continuous

Clustering(15) Variable = AMP PEAK 15(XP22.11) MUTATION ANALYSIS
D15V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 15(XP22.11) MUTATED    3  1
  AMP PEAK 15(XP22.11) WILD-TYPE 29 16
  AMP PEAK 15(XP22.11) MUTATED AMP PEAK 15(XP22.11) WILD-TYPE 
                             4                             45 
  AMP PEAK 15(XP22.11) MUTATED AMP PEAK 15(XP22.11) WILD-TYPE 
                             1                             16 
$`AMP PEAK 15(XP22.11) MUTATED`
TCGA-F2-6880 TCGA-F2-7276 TCGA-HZ-7925 TCGA-HZ-A4BK 
        9.96         7.07        12.03         1.51 

$`AMP PEAK 15(XP22.11) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A545 
       10.98        11.84         5.03         5.19         0.13         0.03 
TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
       12.89         7.63         7.86         0.92         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
        0.26        12.13         0.26         0.62         0.99         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 
        3.91         0.92         0.49         0.10         0.16         2.96 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        0.76         1.02         5.98        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
       21.86        15.35        19.82        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.58        43.79        15.78        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       15.95         0.56        17.13 

  AMP PEAK 15(XP22.11) MUTATED AMP PEAK 15(XP22.11) WILD-TYPE 
                          1.51                           0.03 
  AMP PEAK 15(XP22.11) MUTATED AMP PEAK 15(XP22.11) WILD-TYPE 
                         12.03                          49.38 
  AMP PEAK 15(XP22.11) MUTATED AMP PEAK 15(XP22.11) WILD-TYPE 
                         8.515                          4.770 
[1] "1.5 - 12.0 (8.5)" "0.0 - 49.4 (4.8)"
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK 15(XP22.11) WILD-TYPE"   "AMP PEAK 15(XP22.11) MUTATED" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 15(XP22.11) WILD-TYPE"   "AMP PEAK 15(XP22.11) MUTATED" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "AMP PEAK 15(XP22.11) MUTATED" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "AMP PEAK 15(XP22.11) MUTATED" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-8127 
"AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK 15(XP22.11) WILD-TYPE"   "AMP PEAK 15(XP22.11) MUTATED" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 15(XP22.11) WILD-TYPE"   "AMP PEAK 15(XP22.11) MUTATED" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "AMP PEAK 15(XP22.11) MUTATED" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "AMP PEAK 15(XP22.11) MUTATED" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-8127 
"AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK 15(XP22.11) WILD-TYPE"   "AMP PEAK 15(XP22.11) MUTATED" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 15(XP22.11) WILD-TYPE"   "AMP PEAK 15(XP22.11) MUTATED" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "AMP PEAK 15(XP22.11) MUTATED" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "AMP PEAK 15(XP22.11) MUTATED" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-8127 
"AMP PEAK 15(XP22.11) WILD-TYPE" 
[1] "hr=" "1.1"
D15V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK 15(XP22.11) MUTATED          0        0         0         4
  AMP PEAK 15(XP22.11) WILD-TYPE        2        2         6        34
                                vv
clus                             STAGE III STAGE IV
  AMP PEAK 15(XP22.11) MUTATED           0        0
  AMP PEAK 15(XP22.11) WILD-TYPE         2        2
D15V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  AMP PEAK 15(XP22.11) MUTATED       0     4
  AMP PEAK 15(XP22.11) WILD-TYPE     5    43
D15V4, multiclass
       clus
vv      AMP PEAK 15(XP22.11) MUTATED AMP PEAK 15(XP22.11) WILD-TYPE
  T1+T2                            0                              5
  T3+T4                            4                             43
D15V5, binary
                                cls
clus                              0  1
  AMP PEAK 15(XP22.11) MUTATED    0  4
  AMP PEAK 15(XP22.11) WILD-TYPE 12 36
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(XP22.11) MUTATED      0    4
  AMP PEAK 15(XP22.11) WILD-TYPE   12   36
   clus
vv  AMP PEAK 15(XP22.11) MUTATED AMP PEAK 15(XP22.11) WILD-TYPE
  0                            0                             12
  1                            4                             36
                                vv
clus                             M0 M1 MX
  AMP PEAK 15(XP22.11) MUTATED    2  0  2
  AMP PEAK 15(XP22.11) WILD-TYPE 25  2 21
D15V6, multiclass
    clus
vv   AMP PEAK 15(XP22.11) MUTATED AMP PEAK 15(XP22.11) WILD-TYPE
  M0                            2                             25
  M1                            0                              2
  MX                            2                             21
D15V7, binary
                                cls
clus                              0  1
  AMP PEAK 15(XP22.11) MUTATED    0  4
  AMP PEAK 15(XP22.11) WILD-TYPE 28 20
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(XP22.11) MUTATED      0    4
  AMP PEAK 15(XP22.11) WILD-TYPE   28   20
        clus
vv       AMP PEAK 15(XP22.11) MUTATED AMP PEAK 15(XP22.11) WILD-TYPE
  FEMALE                            0                             28
  MALE                              4                             20
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK 15(XP22.11) MUTATED                                     3
  AMP PEAK 15(XP22.11) WILD-TYPE                                  43
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK 15(XP22.11) MUTATED                                       1
  AMP PEAK 15(XP22.11) WILD-TYPE                                     3
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK 15(XP22.11) MUTATED                                                  0
  AMP PEAK 15(XP22.11) WILD-TYPE                                                1
D15V8, multiclass
                                                  clus
vv                                                 AMP PEAK 15(XP22.11) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 AMP PEAK 15(XP22.11) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          43
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D15V9, continuous
[1] "Remove cluster labels:"       "AMP PEAK 15(XP22.11) MUTATED"
clus
  AMP PEAK 15(XP22.11) MUTATED AMP PEAK 15(XP22.11) WILD-TYPE 
                             1                             12 
                    TCGA-FB-A4P5                     TCGA-H6-8124 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-H6-A45N                     TCGA-IB-7644 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7891 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
D15V10, continuous
                                vv
clus                             R0 R1 RX
  AMP PEAK 15(XP22.11) MUTATED    3  1  0
  AMP PEAK 15(XP22.11) WILD-TYPE 25 19  2
D15V11, multiclass
    clus
vv   AMP PEAK 15(XP22.11) MUTATED AMP PEAK 15(XP22.11) WILD-TYPE
  R0                            3                             25
  R1                            1                             19
  RX                            0                              2
D15V12, continuous

Clustering(16) Variable = AMP PEAK 16(XQ27.1) MUTATION ANALYSIS
D16V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 16(XQ27.1) MUTATED    4  1
  AMP PEAK 16(XQ27.1) WILD-TYPE 28 16
  AMP PEAK 16(XQ27.1) MUTATED AMP PEAK 16(XQ27.1) WILD-TYPE 
                            5                            44 
  AMP PEAK 16(XQ27.1) MUTATED AMP PEAK 16(XQ27.1) WILD-TYPE 
                            1                            16 
$`AMP PEAK 16(XQ27.1) MUTATED`
TCGA-F2-6879 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-8001 TCGA-IB-7652 
       10.98         7.86         0.92         0.62        15.65 

$`AMP PEAK 16(XQ27.1) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.96        11.84         7.07         5.03         5.19         0.13 
TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 
        0.03        12.89         7.63         0.66         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       12.13        12.03         0.26         0.99         0.69         3.91 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.92         0.49         0.10         0.16         2.96         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        1.02         5.98         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.86        15.35        19.82        27.98         4.04         3.58 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.78        19.66        16.04         3.85        15.95 
TCGA-IB-8126 TCGA-IB-8127 
        0.56        17.13 

  AMP PEAK 16(XQ27.1) MUTATED AMP PEAK 16(XQ27.1) WILD-TYPE 
                         0.62                          0.03 
  AMP PEAK 16(XQ27.1) MUTATED AMP PEAK 16(XQ27.1) WILD-TYPE 
                        15.65                         49.38 
  AMP PEAK 16(XQ27.1) MUTATED AMP PEAK 16(XQ27.1) WILD-TYPE 
                         7.86                          4.90 
[1] "0.6 - 15.7 (7.9)" "0.0 - 49.4 (4.9)"
                   TCGA-F2-6879                    TCGA-F2-6880 
  "AMP PEAK 16(XQ27.1) MUTATED" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "AMP PEAK 16(XQ27.1) MUTATED"   "AMP PEAK 16(XQ27.1) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
  "AMP PEAK 16(XQ27.1) MUTATED" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"AMP PEAK 16(XQ27.1) WILD-TYPE"   "AMP PEAK 16(XQ27.1) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-8127 
"AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
  "AMP PEAK 16(XQ27.1) MUTATED" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "AMP PEAK 16(XQ27.1) MUTATED"   "AMP PEAK 16(XQ27.1) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
  "AMP PEAK 16(XQ27.1) MUTATED" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"AMP PEAK 16(XQ27.1) WILD-TYPE"   "AMP PEAK 16(XQ27.1) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-8127 
"AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
  "AMP PEAK 16(XQ27.1) MUTATED" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "AMP PEAK 16(XQ27.1) MUTATED"   "AMP PEAK 16(XQ27.1) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
  "AMP PEAK 16(XQ27.1) MUTATED" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"AMP PEAK 16(XQ27.1) WILD-TYPE"   "AMP PEAK 16(XQ27.1) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-8127 
"AMP PEAK 16(XQ27.1) WILD-TYPE" 
[1] "hr=" "1.1"
D16V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  AMP PEAK 16(XQ27.1) MUTATED          0        0         0         5         1
  AMP PEAK 16(XQ27.1) WILD-TYPE        2        2         6        33         1
                               vv
clus                            STAGE IV
  AMP PEAK 16(XQ27.1) MUTATED          0
  AMP PEAK 16(XQ27.1) WILD-TYPE        2
D16V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  AMP PEAK 16(XQ27.1) MUTATED       0     6
  AMP PEAK 16(XQ27.1) WILD-TYPE     5    41
D16V4, multiclass
       clus
vv      AMP PEAK 16(XQ27.1) MUTATED AMP PEAK 16(XQ27.1) WILD-TYPE
  T1+T2                           0                             5
  T3+T4                           6                            41
D16V5, binary
                               cls
clus                             0  1
  AMP PEAK 16(XQ27.1) MUTATED    1  5
  AMP PEAK 16(XQ27.1) WILD-TYPE 11 35
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 16(XQ27.1) MUTATED      1    5
  AMP PEAK 16(XQ27.1) WILD-TYPE   11   35
   clus
vv  AMP PEAK 16(XQ27.1) MUTATED AMP PEAK 16(XQ27.1) WILD-TYPE
  0                           1                            11
  1                           5                            35
                               vv
clus                            M0 M1 MX
  AMP PEAK 16(XQ27.1) MUTATED    3  0  3
  AMP PEAK 16(XQ27.1) WILD-TYPE 24  2 20
D16V6, multiclass
    clus
vv   AMP PEAK 16(XQ27.1) MUTATED AMP PEAK 16(XQ27.1) WILD-TYPE
  M0                           3                            24
  M1                           0                             2
  MX                           3                            20
D16V7, binary
                               cls
clus                             0  1
  AMP PEAK 16(XQ27.1) MUTATED    2  4
  AMP PEAK 16(XQ27.1) WILD-TYPE 26 20
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 16(XQ27.1) MUTATED      2    4
  AMP PEAK 16(XQ27.1) WILD-TYPE   26   20
        clus
vv       AMP PEAK 16(XQ27.1) MUTATED AMP PEAK 16(XQ27.1) WILD-TYPE
  FEMALE                           2                            26
  MALE                             4                            20
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK 16(XQ27.1) MUTATED                                     4
  AMP PEAK 16(XQ27.1) WILD-TYPE                                  42
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK 16(XQ27.1) MUTATED                                       1
  AMP PEAK 16(XQ27.1) WILD-TYPE                                     3
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK 16(XQ27.1) MUTATED                                                  0
  AMP PEAK 16(XQ27.1) WILD-TYPE                                                1
D16V8, multiclass
                                                  clus
vv                                                 AMP PEAK 16(XQ27.1) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 AMP PEAK 16(XQ27.1) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         42
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D16V9, continuous
D16V10, continuous
                               vv
clus                            R0 R1 RX
  AMP PEAK 16(XQ27.1) MUTATED    4  1  1
  AMP PEAK 16(XQ27.1) WILD-TYPE 24 19  1
D16V11, multiclass
    clus
vv   AMP PEAK 16(XQ27.1) MUTATED AMP PEAK 16(XQ27.1) WILD-TYPE
  R0                           4                            24
  R1                           1                            19
  RX                           1                             1
D16V12, continuous

Clustering(17) Variable = DEL PEAK  1(1P36.22) MUTATION ANALYSIS
D17V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  1(1P36.22) MUTATED    3  6
  DEL PEAK  1(1P36.22) WILD-TYPE 29 11
  DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE 
                             9                             40 
  DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE 
                             6                             11 
$`DEL PEAK  1(1P36.22) MUTATED`
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-8005 TCGA-IB-7646 TCGA-IB-7651 TCGA-IB-7886 
        7.86         0.92         3.91         4.77        19.82         4.04 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-8127 
       15.78        19.66        17.13 

$`DEL PEAK  1(1P36.22) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-7922 
        0.13         0.03        12.89         7.63         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        12.03         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 
        0.69         0.92         0.49         0.10         0.16         2.96 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         1.02         5.98         1.51        11.41        49.38 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 
       21.86        15.35        15.65        27.98         3.58        43.79 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       16.04         3.85        15.95         0.56 

  DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE 
                          0.92                           0.03 
  DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE 
                         19.82                          49.38 
  DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE 
                          7.86                           4.44 
[1] "0.9 - 19.8 (7.9)" "0.0 - 49.4 (4.4)"
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK  1(1P36.22) MUTATED"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK  1(1P36.22) WILD-TYPE"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK  1(1P36.22) WILD-TYPE"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
  "DEL PEAK  1(1P36.22) MUTATED" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK  1(1P36.22) WILD-TYPE"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK  1(1P36.22) MUTATED"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-8127 
  "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK  1(1P36.22) MUTATED"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK  1(1P36.22) WILD-TYPE"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK  1(1P36.22) WILD-TYPE"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
  "DEL PEAK  1(1P36.22) MUTATED" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK  1(1P36.22) WILD-TYPE"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK  1(1P36.22) MUTATED"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-8127 
  "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK  1(1P36.22) MUTATED"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK  1(1P36.22) WILD-TYPE"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK  1(1P36.22) WILD-TYPE"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
  "DEL PEAK  1(1P36.22) MUTATED" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK  1(1P36.22) WILD-TYPE"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK  1(1P36.22) MUTATED"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-8127 
  "DEL PEAK  1(1P36.22) MUTATED" 
[1] "hr=" "2"  
D17V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK  1(1P36.22) MUTATED          0        1         0         8
  DEL PEAK  1(1P36.22) WILD-TYPE        2        1         6        30
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK  1(1P36.22) MUTATED           0        0
  DEL PEAK  1(1P36.22) WILD-TYPE         2        2
D17V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  DEL PEAK  1(1P36.22) MUTATED       1     8
  DEL PEAK  1(1P36.22) WILD-TYPE     4    39
D17V4, multiclass
       clus
vv      DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE
  T1+T2                            1                              4
  T3+T4                            8                             39
D17V5, binary
                                cls
clus                              0  1
  DEL PEAK  1(1P36.22) MUTATED    1  8
  DEL PEAK  1(1P36.22) WILD-TYPE 11 32
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.22) MUTATED      1    8
  DEL PEAK  1(1P36.22) WILD-TYPE   11   32
   clus
vv  DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE
  0                            1                             11
  1                            8                             32
                                vv
clus                             M0 M1 MX
  DEL PEAK  1(1P36.22) MUTATED    7  0  2
  DEL PEAK  1(1P36.22) WILD-TYPE 20  2 21
D17V6, multiclass
    clus
vv   DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE
  M0                            7                             20
  M1                            0                              2
  MX                            2                             21
D17V7, binary
                                cls
clus                              0  1
  DEL PEAK  1(1P36.22) MUTATED    2  7
  DEL PEAK  1(1P36.22) WILD-TYPE 26 17
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.22) MUTATED      2    7
  DEL PEAK  1(1P36.22) WILD-TYPE   26   17
        clus
vv       DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE
  FEMALE                            2                             26
  MALE                              7                             17
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  1(1P36.22) MUTATED                                     8
  DEL PEAK  1(1P36.22) WILD-TYPE                                  38
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  1(1P36.22) MUTATED                                       1
  DEL PEAK  1(1P36.22) WILD-TYPE                                     3
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  1(1P36.22) MUTATED                                                  0
  DEL PEAK  1(1P36.22) WILD-TYPE                                                1
D17V8, multiclass
                                                  clus
vv                                                 DEL PEAK  1(1P36.22) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 DEL PEAK  1(1P36.22) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          38
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D17V9, continuous
D17V10, continuous
                                vv
clus                             R0 R1 RX
  DEL PEAK  1(1P36.22) MUTATED    4  4  1
  DEL PEAK  1(1P36.22) WILD-TYPE 24 16  1
D17V11, multiclass
    clus
vv   DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE
  R0                            4                             24
  R1                            4                             16
  RX                            1                              1
D17V12, continuous

Clustering(18) Variable = DEL PEAK  2(1P36.11) MUTATION ANALYSIS
D18V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  2(1P36.11) MUTATED    5  7
  DEL PEAK  2(1P36.11) WILD-TYPE 27 10
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                            12                             37 
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                             7                             10 
$`DEL PEAK  2(1P36.11) MUTATED`
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7925 TCGA-HZ-8005 TCGA-IB-7646 TCGA-IB-7651 
        7.86         0.92        12.03         3.91         4.77        19.82 
TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-8127 
       15.65         4.04        15.78        19.66         3.85        17.13 

$`DEL PEAK  2(1P36.11) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-7922 
        0.13         0.03        12.89         7.63         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
        0.26        12.13         0.26         0.62         0.99         0.69 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.92         0.49         0.10         0.16         2.96         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 
        1.02         5.98         1.51        11.41        49.38        21.86 
TCGA-IB-7649 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7891 TCGA-IB-7897 
       15.35        27.98         3.58        43.79        16.04        15.95 
TCGA-IB-8126 
        0.56 

  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                          0.92                           0.03 
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                         19.82                          49.38 
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                         9.945                          3.580 
[1] "0.9 - 19.8 (9.9)" "0.0 - 49.4 (3.6)"
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK  2(1P36.11) MUTATED"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
  "DEL PEAK  2(1P36.11) MUTATED"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK  2(1P36.11) MUTATED"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-8127 
  "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK  2(1P36.11) MUTATED"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
  "DEL PEAK  2(1P36.11) MUTATED"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK  2(1P36.11) MUTATED"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-8127 
  "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK  2(1P36.11) MUTATED"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
  "DEL PEAK  2(1P36.11) MUTATED"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK  2(1P36.11) MUTATED"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-8127 
  "DEL PEAK  2(1P36.11) MUTATED" 
[1] "hr=" "1.9"
D18V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK  2(1P36.11) MUTATED          0        1         1        10
  DEL PEAK  2(1P36.11) WILD-TYPE        2        1         5        28
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK  2(1P36.11) MUTATED           0        0
  DEL PEAK  2(1P36.11) WILD-TYPE         2        2
D18V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  DEL PEAK  2(1P36.11) MUTATED       1    11
  DEL PEAK  2(1P36.11) WILD-TYPE     4    36
D18V4, multiclass
       clus
vv      DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  T1+T2                            1                              4
  T3+T4                           11                             36
D18V5, binary
                                cls
clus                              0  1
  DEL PEAK  2(1P36.11) MUTATED    2 10
  DEL PEAK  2(1P36.11) WILD-TYPE 10 30
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  2(1P36.11) MUTATED      2   10
  DEL PEAK  2(1P36.11) WILD-TYPE   10   30
   clus
vv  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  0                            2                             10
  1                           10                             30
                                vv
clus                             M0 M1 MX
  DEL PEAK  2(1P36.11) MUTATED    9  0  3
  DEL PEAK  2(1P36.11) WILD-TYPE 18  2 20
D18V6, multiclass
    clus
vv   DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  M0                            9                             18
  M1                            0                              2
  MX                            3                             20
D18V7, binary
                                cls
clus                              0  1
  DEL PEAK  2(1P36.11) MUTATED    3  9
  DEL PEAK  2(1P36.11) WILD-TYPE 25 15
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  2(1P36.11) MUTATED      3    9
  DEL PEAK  2(1P36.11) WILD-TYPE   25   15
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  FEMALE                            3                             25
  MALE                              9                             15
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  2(1P36.11) MUTATED                                    11
  DEL PEAK  2(1P36.11) WILD-TYPE                                  35
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  2(1P36.11) MUTATED                                       1
  DEL PEAK  2(1P36.11) WILD-TYPE                                     3
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  2(1P36.11) MUTATED                                                  0
  DEL PEAK  2(1P36.11) WILD-TYPE                                                1
D18V8, multiclass
                                                  clus
vv                                                 DEL PEAK  2(1P36.11) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        11
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 DEL PEAK  2(1P36.11) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          35
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D18V9, continuous
D18V10, continuous
                                vv
clus                             R0 R1 RX
  DEL PEAK  2(1P36.11) MUTATED    6  5  1
  DEL PEAK  2(1P36.11) WILD-TYPE 22 15  1
D18V11, multiclass
    clus
vv   DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  R0                            6                             22
  R1                            5                             15
  RX                            1                              1
D18V12, continuous

Clustering(19) Variable = DEL PEAK  3(1P21.2) MUTATION ANALYSIS
D19V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  3(1P21.2) MUTATED    4  5
  DEL PEAK  3(1P21.2) WILD-TYPE 28 12
  DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE 
                            9                            40 
  DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE 
                            5                            12 
$`DEL PEAK  3(1P21.2) MUTATED`
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-8005 TCGA-IB-7646 TCGA-IB-7651 TCGA-IB-7652 
        7.86         0.92         3.91         4.77        19.82        15.65 
TCGA-IB-7886 TCGA-IB-7890 TCGA-IB-8127 
        4.04        19.66        17.13 

$`DEL PEAK  3(1P21.2) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-7922 
        0.13         0.03        12.89         7.63         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        12.03         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 
        0.69         0.92         0.49         0.10         0.16         2.96 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         1.02         5.98         1.51        11.41        49.38 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       21.86        15.35        27.98         3.58        43.79        15.78 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       16.04         3.85        15.95         0.56 

  DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE 
                         0.92                          0.03 
  DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE 
                        19.82                         49.38 
  DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE 
                         7.86                          4.44 
[1] "0.9 - 19.8 (7.9)" "0.0 - 49.4 (4.4)"
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK  3(1P21.2) MUTATED"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  3(1P21.2) WILD-TYPE"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  3(1P21.2) WILD-TYPE"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
  "DEL PEAK  3(1P21.2) MUTATED"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  3(1P21.2) WILD-TYPE"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK  3(1P21.2) WILD-TYPE"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-8127 
  "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK  3(1P21.2) MUTATED"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  3(1P21.2) WILD-TYPE"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  3(1P21.2) WILD-TYPE"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
  "DEL PEAK  3(1P21.2) MUTATED"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  3(1P21.2) WILD-TYPE"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK  3(1P21.2) WILD-TYPE"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-8127 
  "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK  3(1P21.2) MUTATED"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  3(1P21.2) WILD-TYPE"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  3(1P21.2) WILD-TYPE"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
  "DEL PEAK  3(1P21.2) MUTATED"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  3(1P21.2) WILD-TYPE"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK  3(1P21.2) WILD-TYPE"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-8127 
  "DEL PEAK  3(1P21.2) MUTATED" 
[1] "hr=" "1.5"
D19V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK  3(1P21.2) MUTATED          0        1         0         8         0
  DEL PEAK  3(1P21.2) WILD-TYPE        2        1         6        30         2
                               vv
clus                            STAGE IV
  DEL PEAK  3(1P21.2) MUTATED          0
  DEL PEAK  3(1P21.2) WILD-TYPE        2
D19V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  DEL PEAK  3(1P21.2) MUTATED       1     8
  DEL PEAK  3(1P21.2) WILD-TYPE     4    39
D19V4, multiclass
       clus
vv      DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE
  T1+T2                           1                             4
  T3+T4                           8                            39
D19V5, binary
                               cls
clus                             0  1
  DEL PEAK  3(1P21.2) MUTATED    1  8
  DEL PEAK  3(1P21.2) WILD-TYPE 11 32
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(1P21.2) MUTATED      1    8
  DEL PEAK  3(1P21.2) WILD-TYPE   11   32
   clus
vv  DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE
  0                           1                            11
  1                           8                            32
                               vv
clus                            M0 M1 MX
  DEL PEAK  3(1P21.2) MUTATED    7  0  2
  DEL PEAK  3(1P21.2) WILD-TYPE 20  2 21
D19V6, multiclass
    clus
vv   DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE
  M0                           7                            20
  M1                           0                             2
  MX                           2                            21
D19V7, binary
                               cls
clus                             0  1
  DEL PEAK  3(1P21.2) MUTATED    2  7
  DEL PEAK  3(1P21.2) WILD-TYPE 26 17
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(1P21.2) MUTATED      2    7
  DEL PEAK  3(1P21.2) WILD-TYPE   26   17
        clus
vv       DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE
  FEMALE                           2                            26
  MALE                             7                            17
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  3(1P21.2) MUTATED                                     8
  DEL PEAK  3(1P21.2) WILD-TYPE                                  38
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  3(1P21.2) MUTATED                                       1
  DEL PEAK  3(1P21.2) WILD-TYPE                                     3
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  3(1P21.2) MUTATED                                                  0
  DEL PEAK  3(1P21.2) WILD-TYPE                                                1
D19V8, multiclass
                                                  clus
vv                                                 DEL PEAK  3(1P21.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 DEL PEAK  3(1P21.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         38
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D19V9, continuous
D19V10, continuous
                               vv
clus                            R0 R1 RX
  DEL PEAK  3(1P21.2) MUTATED    3  5  1
  DEL PEAK  3(1P21.2) WILD-TYPE 25 15  1
D19V11, multiclass
    clus
vv   DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE
  R0                           3                            25
  R1                           5                            15
  RX                           1                             1
D19V12, continuous

Clustering(20) Variable = DEL PEAK  4(5Q14.2) MUTATION ANALYSIS
D20V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  4(5Q14.2) MUTATED    6  2
  DEL PEAK  4(5Q14.2) WILD-TYPE 26 15
  DEL PEAK  4(5Q14.2) MUTATED DEL PEAK  4(5Q14.2) WILD-TYPE 
                            8                            41 
  DEL PEAK  4(5Q14.2) MUTATED DEL PEAK  4(5Q14.2) WILD-TYPE 
                            2                            15 
$`DEL PEAK  4(5Q14.2) MUTATED`
TCGA-FB-A545 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-8005 TCGA-IB-7652 
        0.03         7.86         0.92         0.13         3.91        15.65 
TCGA-IB-7893 TCGA-IB-8127 
        3.85        17.13 

$`DEL PEAK  4(5Q14.2) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 
        0.13        12.89         7.63         0.66         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 
       12.03         0.26         0.62         0.99         0.69         0.92 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.49         0.10         0.16         2.96         0.76         1.02 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        5.98         1.51        11.41        49.38         4.77        21.86 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       15.35        19.82        27.98         4.04         3.58        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 
       15.78        19.66        16.04        15.95         0.56 

  DEL PEAK  4(5Q14.2) MUTATED DEL PEAK  4(5Q14.2) WILD-TYPE 
                         0.03                          0.10 
  DEL PEAK  4(5Q14.2) MUTATED DEL PEAK  4(5Q14.2) WILD-TYPE 
                        17.13                         49.38 
  DEL PEAK  4(5Q14.2) MUTATED DEL PEAK  4(5Q14.2) WILD-TYPE 
                         3.88                          5.19 
[1] "0.0 - 17.1 (3.9)" "0.1 - 49.4 (5.2)"
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  4(5Q14.2) WILD-TYPE"   "DEL PEAK  4(5Q14.2) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK  4(5Q14.2) MUTATED"   "DEL PEAK  4(5Q14.2) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK  4(5Q14.2) WILD-TYPE"   "DEL PEAK  4(5Q14.2) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  4(5Q14.2) WILD-TYPE"   "DEL PEAK  4(5Q14.2) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK  4(5Q14.2) WILD-TYPE"   "DEL PEAK  4(5Q14.2) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  4(5Q14.2) WILD-TYPE"   "DEL PEAK  4(5Q14.2) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-IB-8127 
  "DEL PEAK  4(5Q14.2) MUTATED" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  4(5Q14.2) WILD-TYPE"   "DEL PEAK  4(5Q14.2) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK  4(5Q14.2) MUTATED"   "DEL PEAK  4(5Q14.2) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK  4(5Q14.2) WILD-TYPE"   "DEL PEAK  4(5Q14.2) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  4(5Q14.2) WILD-TYPE"   "DEL PEAK  4(5Q14.2) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK  4(5Q14.2) WILD-TYPE"   "DEL PEAK  4(5Q14.2) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  4(5Q14.2) WILD-TYPE"   "DEL PEAK  4(5Q14.2) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-IB-8127 
  "DEL PEAK  4(5Q14.2) MUTATED" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  4(5Q14.2) WILD-TYPE"   "DEL PEAK  4(5Q14.2) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK  4(5Q14.2) MUTATED"   "DEL PEAK  4(5Q14.2) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK  4(5Q14.2) WILD-TYPE"   "DEL PEAK  4(5Q14.2) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  4(5Q14.2) WILD-TYPE"   "DEL PEAK  4(5Q14.2) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK  4(5Q14.2) WILD-TYPE"   "DEL PEAK  4(5Q14.2) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  4(5Q14.2) WILD-TYPE"   "DEL PEAK  4(5Q14.2) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-IB-8127 
  "DEL PEAK  4(5Q14.2) MUTATED" 
[1] "hr=" "1.3"
D20V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK  4(5Q14.2) MUTATED          0        0         1         8         0
  DEL PEAK  4(5Q14.2) WILD-TYPE        2        2         5        30         2
                               vv
clus                            STAGE IV
  DEL PEAK  4(5Q14.2) MUTATED          0
  DEL PEAK  4(5Q14.2) WILD-TYPE        2
D20V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  DEL PEAK  4(5Q14.2) MUTATED       0     9
  DEL PEAK  4(5Q14.2) WILD-TYPE     5    38
D20V4, multiclass
       clus
vv      DEL PEAK  4(5Q14.2) MUTATED DEL PEAK  4(5Q14.2) WILD-TYPE
  T1+T2                           0                             5
  T3+T4                           9                            38
D20V5, binary
                               cls
clus                             0  1
  DEL PEAK  4(5Q14.2) MUTATED    1  8
  DEL PEAK  4(5Q14.2) WILD-TYPE 11 32
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(5Q14.2) MUTATED      1    8
  DEL PEAK  4(5Q14.2) WILD-TYPE   11   32
   clus
vv  DEL PEAK  4(5Q14.2) MUTATED DEL PEAK  4(5Q14.2) WILD-TYPE
  0                           1                            11
  1                           8                            32
                               vv
clus                            M0 M1 MX
  DEL PEAK  4(5Q14.2) MUTATED    5  0  4
  DEL PEAK  4(5Q14.2) WILD-TYPE 22  2 19
D20V6, multiclass
    clus
vv   DEL PEAK  4(5Q14.2) MUTATED DEL PEAK  4(5Q14.2) WILD-TYPE
  M0                           5                            22
  M1                           0                             2
  MX                           4                            19
D20V7, binary
                               cls
clus                             0  1
  DEL PEAK  4(5Q14.2) MUTATED    4  5
  DEL PEAK  4(5Q14.2) WILD-TYPE 24 19
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(5Q14.2) MUTATED      4    5
  DEL PEAK  4(5Q14.2) WILD-TYPE   24   19
        clus
vv       DEL PEAK  4(5Q14.2) MUTATED DEL PEAK  4(5Q14.2) WILD-TYPE
  FEMALE                           4                            24
  MALE                             5                            19
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  4(5Q14.2) MUTATED                                     8
  DEL PEAK  4(5Q14.2) WILD-TYPE                                  38
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  4(5Q14.2) MUTATED                                       1
  DEL PEAK  4(5Q14.2) WILD-TYPE                                     3
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  4(5Q14.2) MUTATED                                                  0
  DEL PEAK  4(5Q14.2) WILD-TYPE                                                1
D20V8, multiclass
                                                  clus
vv                                                 DEL PEAK  4(5Q14.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 DEL PEAK  4(5Q14.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         38
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D20V9, continuous
[1] "Remove cluster labels:"      "DEL PEAK  4(5Q14.2) MUTATED"
clus
  DEL PEAK  4(5Q14.2) MUTATED DEL PEAK  4(5Q14.2) WILD-TYPE 
                            1                            12 
                   TCGA-F2-6880                    TCGA-FB-A4P5 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7649 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7885 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-8126 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
D20V10, continuous
[1] "Remove cluster labels:"      "DEL PEAK  4(5Q14.2) MUTATED"
clus
  DEL PEAK  4(5Q14.2) MUTATED DEL PEAK  4(5Q14.2) WILD-TYPE 
                            1                             9 
                   TCGA-FB-A4P5                    TCGA-H6-8124 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7649 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7885 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7891 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-IB-8126 
"DEL PEAK  4(5Q14.2) WILD-TYPE" 
                               vv
clus                            R0 R1 RX
  DEL PEAK  4(5Q14.2) MUTATED    4  3  1
  DEL PEAK  4(5Q14.2) WILD-TYPE 24 17  1
D20V11, multiclass
    clus
vv   DEL PEAK  4(5Q14.2) MUTATED DEL PEAK  4(5Q14.2) WILD-TYPE
  R0                           4                            24
  R1                           3                            17
  RX                           1                             1
D20V12, continuous

Clustering(21) Variable = DEL PEAK  5(5Q15) MUTATION ANALYSIS
D21V1, survival
                             sevent
clus2                          0  1
  DEL PEAK  5(5Q15) MUTATED    6  2
  DEL PEAK  5(5Q15) WILD-TYPE 26 15
  DEL PEAK  5(5Q15) MUTATED DEL PEAK  5(5Q15) WILD-TYPE 
                          8                          41 
  DEL PEAK  5(5Q15) MUTATED DEL PEAK  5(5Q15) WILD-TYPE 
                          2                          15 
$`DEL PEAK  5(5Q15) MUTATED`
TCGA-FB-A545 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-8005 TCGA-IB-7652 
        0.03         7.86         0.92         0.13         3.91        15.65 
TCGA-IB-7893 TCGA-IB-8127 
        3.85        17.13 

$`DEL PEAK  5(5Q15) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 
        0.13        12.89         7.63         0.66         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 
       12.03         0.26         0.62         0.99         0.69         0.92 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.49         0.10         0.16         2.96         0.76         1.02 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        5.98         1.51        11.41        49.38         4.77        21.86 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       15.35        19.82        27.98         4.04         3.58        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 
       15.78        19.66        16.04        15.95         0.56 

  DEL PEAK  5(5Q15) MUTATED DEL PEAK  5(5Q15) WILD-TYPE 
                       0.03                        0.10 
  DEL PEAK  5(5Q15) MUTATED DEL PEAK  5(5Q15) WILD-TYPE 
                      17.13                       49.38 
  DEL PEAK  5(5Q15) MUTATED DEL PEAK  5(5Q15) WILD-TYPE 
                       3.88                        5.19 
[1] "0.0 - 17.1 (3.9)" "0.1 - 49.4 (5.2)"
                 TCGA-F2-6879                  TCGA-F2-6880 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-F2-7273                  TCGA-F2-7276 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-F2-A44G                  TCGA-F2-A44H 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-FB-A4P5                  TCGA-FB-A545 
"DEL PEAK  5(5Q15) WILD-TYPE"   "DEL PEAK  5(5Q15) MUTATED" 
                 TCGA-H6-8124                  TCGA-H6-A45N 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-HZ-7289                  TCGA-HZ-7918 
  "DEL PEAK  5(5Q15) MUTATED"   "DEL PEAK  5(5Q15) MUTATED" 
                 TCGA-HZ-7919                  TCGA-HZ-7922 
"DEL PEAK  5(5Q15) WILD-TYPE"   "DEL PEAK  5(5Q15) MUTATED" 
                 TCGA-HZ-7923                  TCGA-HZ-7924 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-HZ-7925                  TCGA-HZ-7926 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-HZ-8001                  TCGA-HZ-8002 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-HZ-8003                  TCGA-HZ-8005 
"DEL PEAK  5(5Q15) WILD-TYPE"   "DEL PEAK  5(5Q15) MUTATED" 
                 TCGA-HZ-8315                  TCGA-HZ-8317 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-HZ-8519                  TCGA-HZ-8636 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-HZ-8638                  TCGA-HZ-A49G 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-HZ-A49H                  TCGA-HZ-A4BH 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-HZ-A4BK                  TCGA-IB-7644 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-IB-7645                  TCGA-IB-7646 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-IB-7647                  TCGA-IB-7649 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-IB-7651                  TCGA-IB-7652 
"DEL PEAK  5(5Q15) WILD-TYPE"   "DEL PEAK  5(5Q15) MUTATED" 
                 TCGA-IB-7885                  TCGA-IB-7886 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-IB-7887                  TCGA-IB-7888 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-IB-7889                  TCGA-IB-7890 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-IB-7891                  TCGA-IB-7893 
"DEL PEAK  5(5Q15) WILD-TYPE"   "DEL PEAK  5(5Q15) MUTATED" 
                 TCGA-IB-7897                  TCGA-IB-8126 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-IB-8127 
  "DEL PEAK  5(5Q15) MUTATED" 
                 TCGA-F2-6879                  TCGA-F2-6880 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-F2-7273                  TCGA-F2-7276 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-F2-A44G                  TCGA-F2-A44H 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-FB-A4P5                  TCGA-FB-A545 
"DEL PEAK  5(5Q15) WILD-TYPE"   "DEL PEAK  5(5Q15) MUTATED" 
                 TCGA-H6-8124                  TCGA-H6-A45N 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-HZ-7289                  TCGA-HZ-7918 
  "DEL PEAK  5(5Q15) MUTATED"   "DEL PEAK  5(5Q15) MUTATED" 
                 TCGA-HZ-7919                  TCGA-HZ-7922 
"DEL PEAK  5(5Q15) WILD-TYPE"   "DEL PEAK  5(5Q15) MUTATED" 
                 TCGA-HZ-7923                  TCGA-HZ-7924 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-HZ-7925                  TCGA-HZ-7926 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-HZ-8001                  TCGA-HZ-8002 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-HZ-8003                  TCGA-HZ-8005 
"DEL PEAK  5(5Q15) WILD-TYPE"   "DEL PEAK  5(5Q15) MUTATED" 
                 TCGA-HZ-8315                  TCGA-HZ-8317 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-HZ-8519                  TCGA-HZ-8636 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-HZ-8638                  TCGA-HZ-A49G 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-HZ-A49H                  TCGA-HZ-A4BH 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-HZ-A4BK                  TCGA-IB-7644 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-IB-7645                  TCGA-IB-7646 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-IB-7647                  TCGA-IB-7649 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-IB-7651                  TCGA-IB-7652 
"DEL PEAK  5(5Q15) WILD-TYPE"   "DEL PEAK  5(5Q15) MUTATED" 
                 TCGA-IB-7885                  TCGA-IB-7886 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-IB-7887                  TCGA-IB-7888 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-IB-7889                  TCGA-IB-7890 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-IB-7891                  TCGA-IB-7893 
"DEL PEAK  5(5Q15) WILD-TYPE"   "DEL PEAK  5(5Q15) MUTATED" 
                 TCGA-IB-7897                  TCGA-IB-8126 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-IB-8127 
  "DEL PEAK  5(5Q15) MUTATED" 
                 TCGA-F2-6879                  TCGA-F2-6880 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-F2-7273                  TCGA-F2-7276 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-F2-A44G                  TCGA-F2-A44H 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-FB-A4P5                  TCGA-FB-A545 
"DEL PEAK  5(5Q15) WILD-TYPE"   "DEL PEAK  5(5Q15) MUTATED" 
                 TCGA-H6-8124                  TCGA-H6-A45N 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-HZ-7289                  TCGA-HZ-7918 
  "DEL PEAK  5(5Q15) MUTATED"   "DEL PEAK  5(5Q15) MUTATED" 
                 TCGA-HZ-7919                  TCGA-HZ-7922 
"DEL PEAK  5(5Q15) WILD-TYPE"   "DEL PEAK  5(5Q15) MUTATED" 
                 TCGA-HZ-7923                  TCGA-HZ-7924 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-HZ-7925                  TCGA-HZ-7926 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-HZ-8001                  TCGA-HZ-8002 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-HZ-8003                  TCGA-HZ-8005 
"DEL PEAK  5(5Q15) WILD-TYPE"   "DEL PEAK  5(5Q15) MUTATED" 
                 TCGA-HZ-8315                  TCGA-HZ-8317 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-HZ-8519                  TCGA-HZ-8636 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-HZ-8638                  TCGA-HZ-A49G 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-HZ-A49H                  TCGA-HZ-A4BH 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-HZ-A4BK                  TCGA-IB-7644 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-IB-7645                  TCGA-IB-7646 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-IB-7647                  TCGA-IB-7649 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-IB-7651                  TCGA-IB-7652 
"DEL PEAK  5(5Q15) WILD-TYPE"   "DEL PEAK  5(5Q15) MUTATED" 
                 TCGA-IB-7885                  TCGA-IB-7886 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-IB-7887                  TCGA-IB-7888 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-IB-7889                  TCGA-IB-7890 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-IB-7891                  TCGA-IB-7893 
"DEL PEAK  5(5Q15) WILD-TYPE"   "DEL PEAK  5(5Q15) MUTATED" 
                 TCGA-IB-7897                  TCGA-IB-8126 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-IB-8127 
  "DEL PEAK  5(5Q15) MUTATED" 
[1] "hr=" "1.3"
D21V2, continuous
                             vv
clus                          STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK  5(5Q15) MUTATED          0        0         1         9         0
  DEL PEAK  5(5Q15) WILD-TYPE        2        2         5        29         2
                             vv
clus                          STAGE IV
  DEL PEAK  5(5Q15) MUTATED          0
  DEL PEAK  5(5Q15) WILD-TYPE        2
D21V3, multiclass
                             vv
clus                          T1+T2 T3+T4
  DEL PEAK  5(5Q15) MUTATED       0    10
  DEL PEAK  5(5Q15) WILD-TYPE     5    37
D21V4, multiclass
       clus
vv      DEL PEAK  5(5Q15) MUTATED DEL PEAK  5(5Q15) WILD-TYPE
  T1+T2                         0                           5
  T3+T4                        10                          37
D21V5, binary
                             cls
clus                           0  1
  DEL PEAK  5(5Q15) MUTATED    1  9
  DEL PEAK  5(5Q15) WILD-TYPE 11 31
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  5(5Q15) MUTATED      1    9
  DEL PEAK  5(5Q15) WILD-TYPE   11   31
   clus
vv  DEL PEAK  5(5Q15) MUTATED DEL PEAK  5(5Q15) WILD-TYPE
  0                         1                          11
  1                         9                          31
                             vv
clus                          M0 M1 MX
  DEL PEAK  5(5Q15) MUTATED    5  0  5
  DEL PEAK  5(5Q15) WILD-TYPE 22  2 18
D21V6, multiclass
    clus
vv   DEL PEAK  5(5Q15) MUTATED DEL PEAK  5(5Q15) WILD-TYPE
  M0                         5                          22
  M1                         0                           2
  MX                         5                          18
D21V7, binary
                             cls
clus                           0  1
  DEL PEAK  5(5Q15) MUTATED    4  6
  DEL PEAK  5(5Q15) WILD-TYPE 24 18
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  5(5Q15) MUTATED      4    6
  DEL PEAK  5(5Q15) WILD-TYPE   24   18
        clus
vv       DEL PEAK  5(5Q15) MUTATED DEL PEAK  5(5Q15) WILD-TYPE
  FEMALE                         4                          24
  MALE                           6                          18
                             vv
clus                          PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  5(5Q15) MUTATED                                     9
  DEL PEAK  5(5Q15) WILD-TYPE                                  37
                             vv
clus                          PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  5(5Q15) MUTATED                                       1
  DEL PEAK  5(5Q15) WILD-TYPE                                     3
                             vv
clus                          PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  5(5Q15) MUTATED                                                  0
  DEL PEAK  5(5Q15) WILD-TYPE                                                1
D21V8, multiclass
                                                  clus
vv                                                 DEL PEAK  5(5Q15) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                      9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                    1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                         0
                                                  clus
vv                                                 DEL PEAK  5(5Q15) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                       37
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           1
D21V9, continuous
[1] "Remove cluster labels:"    "DEL PEAK  5(5Q15) MUTATED"
clus
  DEL PEAK  5(5Q15) MUTATED DEL PEAK  5(5Q15) WILD-TYPE 
                          1                          12 
                 TCGA-F2-6880                  TCGA-FB-A4P5 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-H6-8124                  TCGA-H6-A45N 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-IB-7644                  TCGA-IB-7649 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-IB-7651                  TCGA-IB-7885 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-IB-7886                  TCGA-IB-7887 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-IB-7891                  TCGA-IB-8126 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
D21V10, continuous
[1] "Remove cluster labels:"    "DEL PEAK  5(5Q15) MUTATED"
clus
  DEL PEAK  5(5Q15) MUTATED DEL PEAK  5(5Q15) WILD-TYPE 
                          1                           9 
                 TCGA-FB-A4P5                  TCGA-H6-8124 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-IB-7644                  TCGA-IB-7649 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-IB-7651                  TCGA-IB-7885 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-IB-7886                  TCGA-IB-7891 
"DEL PEAK  5(5Q15) WILD-TYPE" "DEL PEAK  5(5Q15) WILD-TYPE" 
                 TCGA-IB-8126 
"DEL PEAK  5(5Q15) WILD-TYPE" 
                             vv
clus                          R0 R1 RX
  DEL PEAK  5(5Q15) MUTATED    4  4  1
  DEL PEAK  5(5Q15) WILD-TYPE 24 16  1
D21V11, multiclass
    clus
vv   DEL PEAK  5(5Q15) MUTATED DEL PEAK  5(5Q15) WILD-TYPE
  R0                         4                          24
  R1                         4                          16
  RX                         1                           1
D21V12, continuous

Clustering(22) Variable = DEL PEAK  6(6P25.2) MUTATION ANALYSIS
D22V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  6(6P25.2) MUTATED   11  8
  DEL PEAK  6(6P25.2) WILD-TYPE 21  9
  DEL PEAK  6(6P25.2) MUTATED DEL PEAK  6(6P25.2) WILD-TYPE 
                           19                            30 
  DEL PEAK  6(6P25.2) MUTATED DEL PEAK  6(6P25.2) WILD-TYPE 
                            8                             9 
$`DEL PEAK  6(6P25.2) MUTATED`
TCGA-F2-6879 TCGA-F2-A44H TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7918 
       10.98         5.19         0.03        12.89         7.86         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-8001 TCGA-HZ-8315 TCGA-HZ-A4BK TCGA-IB-7646 
        0.66         0.13         0.62         0.92         1.51         4.77 
TCGA-IB-7647 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 
       21.86         4.04         3.58        15.78        19.66         3.85 
TCGA-IB-8127 
       17.13 

$`DEL PEAK  6(6P25.2) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-H6-A45N 
        9.96        11.84         7.07         5.03         0.13         7.63 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 
        0.26        12.13        12.03         0.26         0.99         0.69 
TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        3.91         0.49         0.10         0.16         2.96         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7649 TCGA-IB-7651 
        1.02         5.98        11.41        49.38        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7888 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 
       15.65        27.98        43.79        16.04        15.95         0.56 

  DEL PEAK  6(6P25.2) MUTATED DEL PEAK  6(6P25.2) WILD-TYPE 
                         0.03                          0.10 
  DEL PEAK  6(6P25.2) MUTATED DEL PEAK  6(6P25.2) WILD-TYPE 
                        21.86                         49.38 
  DEL PEAK  6(6P25.2) MUTATED DEL PEAK  6(6P25.2) WILD-TYPE 
                        4.040                         6.525 
[1] "0.0 - 21.9 (4.0)" "0.1 - 49.4 (6.5)"
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK  6(6P25.2) MUTATED" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  6(6P25.2) WILD-TYPE" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  6(6P25.2) WILD-TYPE"   "DEL PEAK  6(6P25.2) MUTATED" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  6(6P25.2) WILD-TYPE"   "DEL PEAK  6(6P25.2) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK  6(6P25.2) MUTATED" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK  6(6P25.2) MUTATED"   "DEL PEAK  6(6P25.2) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
  "DEL PEAK  6(6P25.2) MUTATED"   "DEL PEAK  6(6P25.2) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  6(6P25.2) WILD-TYPE" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  6(6P25.2) WILD-TYPE" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
  "DEL PEAK  6(6P25.2) MUTATED" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  6(6P25.2) WILD-TYPE" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
  "DEL PEAK  6(6P25.2) MUTATED" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  6(6P25.2) WILD-TYPE" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  6(6P25.2) WILD-TYPE" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  6(6P25.2) WILD-TYPE" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
  "DEL PEAK  6(6P25.2) MUTATED" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  6(6P25.2) WILD-TYPE"   "DEL PEAK  6(6P25.2) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
  "DEL PEAK  6(6P25.2) MUTATED" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK  6(6P25.2) WILD-TYPE" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  6(6P25.2) WILD-TYPE"   "DEL PEAK  6(6P25.2) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
  "DEL PEAK  6(6P25.2) MUTATED" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
  "DEL PEAK  6(6P25.2) MUTATED"   "DEL PEAK  6(6P25.2) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  6(6P25.2) WILD-TYPE"   "DEL PEAK  6(6P25.2) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  6(6P25.2) WILD-TYPE" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-IB-8127 
  "DEL PEAK  6(6P25.2) MUTATED" 
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK  6(6P25.2) MUTATED" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  6(6P25.2) WILD-TYPE" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  6(6P25.2) WILD-TYPE"   "DEL PEAK  6(6P25.2) MUTATED" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  6(6P25.2) WILD-TYPE"   "DEL PEAK  6(6P25.2) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK  6(6P25.2) MUTATED" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK  6(6P25.2) MUTATED"   "DEL PEAK  6(6P25.2) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
  "DEL PEAK  6(6P25.2) MUTATED"   "DEL PEAK  6(6P25.2) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  6(6P25.2) WILD-TYPE" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  6(6P25.2) WILD-TYPE" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
  "DEL PEAK  6(6P25.2) MUTATED" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  6(6P25.2) WILD-TYPE" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
  "DEL PEAK  6(6P25.2) MUTATED" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  6(6P25.2) WILD-TYPE" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  6(6P25.2) WILD-TYPE" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  6(6P25.2) WILD-TYPE" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
  "DEL PEAK  6(6P25.2) MUTATED" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  6(6P25.2) WILD-TYPE"   "DEL PEAK  6(6P25.2) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
  "DEL PEAK  6(6P25.2) MUTATED" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK  6(6P25.2) WILD-TYPE" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  6(6P25.2) WILD-TYPE"   "DEL PEAK  6(6P25.2) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
  "DEL PEAK  6(6P25.2) MUTATED" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
  "DEL PEAK  6(6P25.2) MUTATED"   "DEL PEAK  6(6P25.2) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  6(6P25.2) WILD-TYPE"   "DEL PEAK  6(6P25.2) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  6(6P25.2) WILD-TYPE" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-IB-8127 
  "DEL PEAK  6(6P25.2) MUTATED" 
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK  6(6P25.2) MUTATED" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  6(6P25.2) WILD-TYPE" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  6(6P25.2) WILD-TYPE"   "DEL PEAK  6(6P25.2) MUTATED" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  6(6P25.2) WILD-TYPE"   "DEL PEAK  6(6P25.2) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK  6(6P25.2) MUTATED" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK  6(6P25.2) MUTATED"   "DEL PEAK  6(6P25.2) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
  "DEL PEAK  6(6P25.2) MUTATED"   "DEL PEAK  6(6P25.2) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  6(6P25.2) WILD-TYPE" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  6(6P25.2) WILD-TYPE" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
  "DEL PEAK  6(6P25.2) MUTATED" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  6(6P25.2) WILD-TYPE" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
  "DEL PEAK  6(6P25.2) MUTATED" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  6(6P25.2) WILD-TYPE" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  6(6P25.2) WILD-TYPE" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  6(6P25.2) WILD-TYPE" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
  "DEL PEAK  6(6P25.2) MUTATED" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  6(6P25.2) WILD-TYPE"   "DEL PEAK  6(6P25.2) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
  "DEL PEAK  6(6P25.2) MUTATED" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK  6(6P25.2) WILD-TYPE" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  6(6P25.2) WILD-TYPE"   "DEL PEAK  6(6P25.2) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
  "DEL PEAK  6(6P25.2) MUTATED" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
  "DEL PEAK  6(6P25.2) MUTATED"   "DEL PEAK  6(6P25.2) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  6(6P25.2) WILD-TYPE"   "DEL PEAK  6(6P25.2) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  6(6P25.2) WILD-TYPE" "DEL PEAK  6(6P25.2) WILD-TYPE" 
                   TCGA-IB-8127 
  "DEL PEAK  6(6P25.2) MUTATED" 
[1] "hr=" "2.3"
D22V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK  6(6P25.2) MUTATED          0        1         3        14         1
  DEL PEAK  6(6P25.2) WILD-TYPE        2        1         3        24         1
                               vv
clus                            STAGE IV
  DEL PEAK  6(6P25.2) MUTATED          0
  DEL PEAK  6(6P25.2) WILD-TYPE        2
D22V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  DEL PEAK  6(6P25.2) MUTATED       1    18
  DEL PEAK  6(6P25.2) WILD-TYPE     4    29
D22V4, multiclass
       clus
vv      DEL PEAK  6(6P25.2) MUTATED DEL PEAK  6(6P25.2) WILD-TYPE
  T1+T2                           1                             4
  T3+T4                          18                            29
D22V5, binary
                               cls
clus                             0  1
  DEL PEAK  6(6P25.2) MUTATED    5 14
  DEL PEAK  6(6P25.2) WILD-TYPE  7 26
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(6P25.2) MUTATED      5   14
  DEL PEAK  6(6P25.2) WILD-TYPE    7   26
   clus
vv  DEL PEAK  6(6P25.2) MUTATED DEL PEAK  6(6P25.2) WILD-TYPE
  0                           5                             7
  1                          14                            26
                               vv
clus                            M0 M1 MX
  DEL PEAK  6(6P25.2) MUTATED   14  0  5
  DEL PEAK  6(6P25.2) WILD-TYPE 13  2 18
D22V6, multiclass
    clus
vv   DEL PEAK  6(6P25.2) MUTATED DEL PEAK  6(6P25.2) WILD-TYPE
  M0                          14                            13
  M1                           0                             2
  MX                           5                            18
D22V7, binary
                               cls
clus                             0  1
  DEL PEAK  6(6P25.2) MUTATED    8 11
  DEL PEAK  6(6P25.2) WILD-TYPE 20 13
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(6P25.2) MUTATED      8   11
  DEL PEAK  6(6P25.2) WILD-TYPE   20   13
        clus
vv       DEL PEAK  6(6P25.2) MUTATED DEL PEAK  6(6P25.2) WILD-TYPE
  FEMALE                           8                            20
  MALE                            11                            13
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  6(6P25.2) MUTATED                                    16
  DEL PEAK  6(6P25.2) WILD-TYPE                                  30
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  6(6P25.2) MUTATED                                       2
  DEL PEAK  6(6P25.2) WILD-TYPE                                     2
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  6(6P25.2) MUTATED                                                  0
  DEL PEAK  6(6P25.2) WILD-TYPE                                                1
D22V8, multiclass
                                                  clus
vv                                                 DEL PEAK  6(6P25.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                       16
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 DEL PEAK  6(6P25.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         30
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D22V9, continuous
D22V10, continuous
                               vv
clus                            R0 R1 RX
  DEL PEAK  6(6P25.2) MUTATED    9  8  1
  DEL PEAK  6(6P25.2) WILD-TYPE 19 12  1
D22V11, multiclass
    clus
vv   DEL PEAK  6(6P25.2) MUTATED DEL PEAK  6(6P25.2) WILD-TYPE
  R0                           9                            19
  R1                           8                            12
  RX                           1                             1
D22V12, continuous

Clustering(23) Variable = DEL PEAK  7(6P22.3) MUTATION ANALYSIS
D23V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  7(6P22.3) MUTATED   12  7
  DEL PEAK  7(6P22.3) WILD-TYPE 20 10
  DEL PEAK  7(6P22.3) MUTATED DEL PEAK  7(6P22.3) WILD-TYPE 
                           19                            30 
  DEL PEAK  7(6P22.3) MUTATED DEL PEAK  7(6P22.3) WILD-TYPE 
                            7                            10 
$`DEL PEAK  7(6P22.3) MUTATED`
TCGA-F2-6879 TCGA-F2-A44H TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7918 
       10.98         5.19         0.03        12.89         7.86         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7925 TCGA-HZ-8001 TCGA-HZ-8315 TCGA-HZ-A4BK 
        0.66         0.13        12.03         0.62         0.92         1.51 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7886 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 
        4.77        21.86         4.04        15.78        19.66         3.85 
TCGA-IB-8127 
       17.13 

$`DEL PEAK  7(6P22.3) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-H6-A45N 
        9.96        11.84         7.07         5.03         0.13         7.63 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
        0.26        12.13         0.26         0.99         0.69         3.91 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.49         0.10         0.16         2.96         0.76         1.02 
TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
        5.98        11.41        49.38        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 
       27.98         3.58        43.79        16.04        15.95         0.56 

  DEL PEAK  7(6P22.3) MUTATED DEL PEAK  7(6P22.3) WILD-TYPE 
                         0.03                          0.10 
  DEL PEAK  7(6P22.3) MUTATED DEL PEAK  7(6P22.3) WILD-TYPE 
                        21.86                         49.38 
  DEL PEAK  7(6P22.3) MUTATED DEL PEAK  7(6P22.3) WILD-TYPE 
                        4.770                         5.505 
[1] "0.0 - 21.9 (4.8)" "0.1 - 49.4 (5.5)"
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK  7(6P22.3) MUTATED" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  7(6P22.3) WILD-TYPE" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  7(6P22.3) WILD-TYPE"   "DEL PEAK  7(6P22.3) MUTATED" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  7(6P22.3) WILD-TYPE"   "DEL PEAK  7(6P22.3) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK  7(6P22.3) MUTATED" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK  7(6P22.3) MUTATED"   "DEL PEAK  7(6P22.3) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
  "DEL PEAK  7(6P22.3) MUTATED"   "DEL PEAK  7(6P22.3) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  7(6P22.3) WILD-TYPE" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "DEL PEAK  7(6P22.3) MUTATED" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
  "DEL PEAK  7(6P22.3) MUTATED" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  7(6P22.3) WILD-TYPE" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
  "DEL PEAK  7(6P22.3) MUTATED" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  7(6P22.3) WILD-TYPE" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  7(6P22.3) WILD-TYPE" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  7(6P22.3) WILD-TYPE" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
  "DEL PEAK  7(6P22.3) MUTATED" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  7(6P22.3) WILD-TYPE"   "DEL PEAK  7(6P22.3) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
  "DEL PEAK  7(6P22.3) MUTATED" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK  7(6P22.3) WILD-TYPE" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  7(6P22.3) WILD-TYPE"   "DEL PEAK  7(6P22.3) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK  7(6P22.3) WILD-TYPE" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
  "DEL PEAK  7(6P22.3) MUTATED"   "DEL PEAK  7(6P22.3) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  7(6P22.3) WILD-TYPE"   "DEL PEAK  7(6P22.3) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  7(6P22.3) WILD-TYPE" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-IB-8127 
  "DEL PEAK  7(6P22.3) MUTATED" 
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK  7(6P22.3) MUTATED" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  7(6P22.3) WILD-TYPE" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  7(6P22.3) WILD-TYPE"   "DEL PEAK  7(6P22.3) MUTATED" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  7(6P22.3) WILD-TYPE"   "DEL PEAK  7(6P22.3) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK  7(6P22.3) MUTATED" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK  7(6P22.3) MUTATED"   "DEL PEAK  7(6P22.3) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
  "DEL PEAK  7(6P22.3) MUTATED"   "DEL PEAK  7(6P22.3) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  7(6P22.3) WILD-TYPE" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "DEL PEAK  7(6P22.3) MUTATED" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
  "DEL PEAK  7(6P22.3) MUTATED" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  7(6P22.3) WILD-TYPE" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
  "DEL PEAK  7(6P22.3) MUTATED" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  7(6P22.3) WILD-TYPE" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  7(6P22.3) WILD-TYPE" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  7(6P22.3) WILD-TYPE" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
  "DEL PEAK  7(6P22.3) MUTATED" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  7(6P22.3) WILD-TYPE"   "DEL PEAK  7(6P22.3) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
  "DEL PEAK  7(6P22.3) MUTATED" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK  7(6P22.3) WILD-TYPE" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  7(6P22.3) WILD-TYPE"   "DEL PEAK  7(6P22.3) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK  7(6P22.3) WILD-TYPE" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
  "DEL PEAK  7(6P22.3) MUTATED"   "DEL PEAK  7(6P22.3) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  7(6P22.3) WILD-TYPE"   "DEL PEAK  7(6P22.3) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  7(6P22.3) WILD-TYPE" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-IB-8127 
  "DEL PEAK  7(6P22.3) MUTATED" 
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK  7(6P22.3) MUTATED" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  7(6P22.3) WILD-TYPE" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  7(6P22.3) WILD-TYPE"   "DEL PEAK  7(6P22.3) MUTATED" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  7(6P22.3) WILD-TYPE"   "DEL PEAK  7(6P22.3) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK  7(6P22.3) MUTATED" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK  7(6P22.3) MUTATED"   "DEL PEAK  7(6P22.3) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
  "DEL PEAK  7(6P22.3) MUTATED"   "DEL PEAK  7(6P22.3) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  7(6P22.3) WILD-TYPE" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "DEL PEAK  7(6P22.3) MUTATED" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
  "DEL PEAK  7(6P22.3) MUTATED" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  7(6P22.3) WILD-TYPE" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
  "DEL PEAK  7(6P22.3) MUTATED" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  7(6P22.3) WILD-TYPE" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  7(6P22.3) WILD-TYPE" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  7(6P22.3) WILD-TYPE" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
  "DEL PEAK  7(6P22.3) MUTATED" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  7(6P22.3) WILD-TYPE"   "DEL PEAK  7(6P22.3) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
  "DEL PEAK  7(6P22.3) MUTATED" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK  7(6P22.3) WILD-TYPE" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  7(6P22.3) WILD-TYPE"   "DEL PEAK  7(6P22.3) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK  7(6P22.3) WILD-TYPE" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
  "DEL PEAK  7(6P22.3) MUTATED"   "DEL PEAK  7(6P22.3) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  7(6P22.3) WILD-TYPE"   "DEL PEAK  7(6P22.3) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  7(6P22.3) WILD-TYPE" "DEL PEAK  7(6P22.3) WILD-TYPE" 
                   TCGA-IB-8127 
  "DEL PEAK  7(6P22.3) MUTATED" 
[1] "hr=" "1.6"
D23V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK  7(6P22.3) MUTATED          0        1         3        14         1
  DEL PEAK  7(6P22.3) WILD-TYPE        2        1         3        24         1
                               vv
clus                            STAGE IV
  DEL PEAK  7(6P22.3) MUTATED          0
  DEL PEAK  7(6P22.3) WILD-TYPE        2
D23V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  DEL PEAK  7(6P22.3) MUTATED       1    18
  DEL PEAK  7(6P22.3) WILD-TYPE     4    29
D23V4, multiclass
       clus
vv      DEL PEAK  7(6P22.3) MUTATED DEL PEAK  7(6P22.3) WILD-TYPE
  T1+T2                           1                             4
  T3+T4                          18                            29
D23V5, binary
                               cls
clus                             0  1
  DEL PEAK  7(6P22.3) MUTATED    5 14
  DEL PEAK  7(6P22.3) WILD-TYPE  7 26
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(6P22.3) MUTATED      5   14
  DEL PEAK  7(6P22.3) WILD-TYPE    7   26
   clus
vv  DEL PEAK  7(6P22.3) MUTATED DEL PEAK  7(6P22.3) WILD-TYPE
  0                           5                             7
  1                          14                            26
                               vv
clus                            M0 M1 MX
  DEL PEAK  7(6P22.3) MUTATED   13  0  6
  DEL PEAK  7(6P22.3) WILD-TYPE 14  2 17
D23V6, multiclass
    clus
vv   DEL PEAK  7(6P22.3) MUTATED DEL PEAK  7(6P22.3) WILD-TYPE
  M0                          13                            14
  M1                           0                             2
  MX                           6                            17
D23V7, binary
                               cls
clus                             0  1
  DEL PEAK  7(6P22.3) MUTATED    7 12
  DEL PEAK  7(6P22.3) WILD-TYPE 21 12
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(6P22.3) MUTATED      7   12
  DEL PEAK  7(6P22.3) WILD-TYPE   21   12
        clus
vv       DEL PEAK  7(6P22.3) MUTATED DEL PEAK  7(6P22.3) WILD-TYPE
  FEMALE                           7                            21
  MALE                            12                            12
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  7(6P22.3) MUTATED                                    16
  DEL PEAK  7(6P22.3) WILD-TYPE                                  30
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  7(6P22.3) MUTATED                                       2
  DEL PEAK  7(6P22.3) WILD-TYPE                                     2
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  7(6P22.3) MUTATED                                                  0
  DEL PEAK  7(6P22.3) WILD-TYPE                                                1
D23V8, multiclass
                                                  clus
vv                                                 DEL PEAK  7(6P22.3) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                       16
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 DEL PEAK  7(6P22.3) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         30
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D23V9, continuous
D23V10, continuous
                               vv
clus                            R0 R1 RX
  DEL PEAK  7(6P22.3) MUTATED   10  7  1
  DEL PEAK  7(6P22.3) WILD-TYPE 18 13  1
D23V11, multiclass
    clus
vv   DEL PEAK  7(6P22.3) MUTATED DEL PEAK  7(6P22.3) WILD-TYPE
  R0                          10                            18
  R1                           7                            13
  RX                           1                             1
D23V12, continuous

Clustering(24) Variable = DEL PEAK  8(6Q22.33) MUTATION ANALYSIS
D24V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  8(6Q22.33) MUTATED   14 10
  DEL PEAK  8(6Q22.33) WILD-TYPE 18  7
  DEL PEAK  8(6Q22.33) MUTATED DEL PEAK  8(6Q22.33) WILD-TYPE 
                            24                             25 
  DEL PEAK  8(6Q22.33) MUTATED DEL PEAK  8(6Q22.33) WILD-TYPE 
                            10                              7 
$`DEL PEAK  8(6Q22.33) MUTATED`
TCGA-F2-6879 TCGA-F2-A44H TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 
       10.98         5.19         0.03        12.89         7.63         7.86 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7925 TCGA-HZ-8001 TCGA-HZ-8005 
        0.92         0.66         0.13        12.03         0.62         3.91 
TCGA-HZ-8315 TCGA-HZ-8636 TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7885 
        0.92         0.16        11.41         4.77        21.86        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-8127 
        4.04         3.58        15.78        19.66         3.85        17.13 

$`DEL PEAK  8(6Q22.33) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-HZ-7923 
        9.96        11.84         7.07         5.03         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8317 TCGA-HZ-8519 
       12.13         0.26         0.99         0.69         0.49         0.10 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7645 
        2.96         0.76         1.02         5.98         1.51        49.38 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7888 TCGA-IB-7891 TCGA-IB-7897 
       15.35        19.82        15.65        43.79        16.04        15.95 
TCGA-IB-8126 
        0.56 

  DEL PEAK  8(6Q22.33) MUTATED DEL PEAK  8(6Q22.33) WILD-TYPE 
                          0.03                           0.10 
  DEL PEAK  8(6Q22.33) MUTATED DEL PEAK  8(6Q22.33) WILD-TYPE 
                         27.98                          49.38 
  DEL PEAK  8(6Q22.33) MUTATED DEL PEAK  8(6Q22.33) WILD-TYPE 
                          4.98                           5.03 
[1] "0.0 - 28.0 (5.0)" "0.1 - 49.4 (5.0)"
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK  8(6Q22.33) MUTATED" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK  8(6Q22.33) WILD-TYPE" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK  8(6Q22.33) WILD-TYPE"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK  8(6Q22.33) WILD-TYPE"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK  8(6Q22.33) MUTATED"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK  8(6Q22.33) MUTATED"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "DEL PEAK  8(6Q22.33) MUTATED"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK  8(6Q22.33) WILD-TYPE" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "DEL PEAK  8(6Q22.33) MUTATED" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
  "DEL PEAK  8(6Q22.33) MUTATED" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK  8(6Q22.33) WILD-TYPE"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
  "DEL PEAK  8(6Q22.33) MUTATED" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK  8(6Q22.33) WILD-TYPE"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK  8(6Q22.33) WILD-TYPE" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK  8(6Q22.33) WILD-TYPE" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK  8(6Q22.33) WILD-TYPE"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK  8(6Q22.33) WILD-TYPE"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "DEL PEAK  8(6Q22.33) MUTATED" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK  8(6Q22.33) WILD-TYPE" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
  "DEL PEAK  8(6Q22.33) MUTATED"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
  "DEL PEAK  8(6Q22.33) MUTATED" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK  8(6Q22.33) MUTATED"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK  8(6Q22.33) WILD-TYPE"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK  8(6Q22.33) WILD-TYPE" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-IB-8127 
  "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK  8(6Q22.33) MUTATED" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK  8(6Q22.33) WILD-TYPE" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK  8(6Q22.33) WILD-TYPE"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK  8(6Q22.33) WILD-TYPE"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK  8(6Q22.33) MUTATED"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK  8(6Q22.33) MUTATED"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "DEL PEAK  8(6Q22.33) MUTATED"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK  8(6Q22.33) WILD-TYPE" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "DEL PEAK  8(6Q22.33) MUTATED" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
  "DEL PEAK  8(6Q22.33) MUTATED" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK  8(6Q22.33) WILD-TYPE"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
  "DEL PEAK  8(6Q22.33) MUTATED" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK  8(6Q22.33) WILD-TYPE"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK  8(6Q22.33) WILD-TYPE" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK  8(6Q22.33) WILD-TYPE" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK  8(6Q22.33) WILD-TYPE"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK  8(6Q22.33) WILD-TYPE"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "DEL PEAK  8(6Q22.33) MUTATED" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK  8(6Q22.33) WILD-TYPE" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
  "DEL PEAK  8(6Q22.33) MUTATED"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
  "DEL PEAK  8(6Q22.33) MUTATED" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK  8(6Q22.33) MUTATED"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK  8(6Q22.33) WILD-TYPE"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK  8(6Q22.33) WILD-TYPE" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-IB-8127 
  "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK  8(6Q22.33) MUTATED" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK  8(6Q22.33) WILD-TYPE" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK  8(6Q22.33) WILD-TYPE"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK  8(6Q22.33) WILD-TYPE"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK  8(6Q22.33) MUTATED"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK  8(6Q22.33) MUTATED"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "DEL PEAK  8(6Q22.33) MUTATED"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK  8(6Q22.33) WILD-TYPE" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "DEL PEAK  8(6Q22.33) MUTATED" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
  "DEL PEAK  8(6Q22.33) MUTATED" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK  8(6Q22.33) WILD-TYPE"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
  "DEL PEAK  8(6Q22.33) MUTATED" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK  8(6Q22.33) WILD-TYPE"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK  8(6Q22.33) WILD-TYPE" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK  8(6Q22.33) WILD-TYPE" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK  8(6Q22.33) WILD-TYPE"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK  8(6Q22.33) WILD-TYPE"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "DEL PEAK  8(6Q22.33) MUTATED" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK  8(6Q22.33) WILD-TYPE" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
  "DEL PEAK  8(6Q22.33) MUTATED"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
  "DEL PEAK  8(6Q22.33) MUTATED" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK  8(6Q22.33) MUTATED"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK  8(6Q22.33) WILD-TYPE"   "DEL PEAK  8(6Q22.33) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK  8(6Q22.33) WILD-TYPE" "DEL PEAK  8(6Q22.33) WILD-TYPE" 
                    TCGA-IB-8127 
  "DEL PEAK  8(6Q22.33) MUTATED" 
[1] "hr=" "2.1"
D24V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK  8(6Q22.33) MUTATED          0        1         3        17
  DEL PEAK  8(6Q22.33) WILD-TYPE        2        1         3        21
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK  8(6Q22.33) MUTATED           1        2
  DEL PEAK  8(6Q22.33) WILD-TYPE         1        0
D24V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  DEL PEAK  8(6Q22.33) MUTATED       1    23
  DEL PEAK  8(6Q22.33) WILD-TYPE     4    24
D24V4, multiclass
       clus
vv      DEL PEAK  8(6Q22.33) MUTATED DEL PEAK  8(6Q22.33) WILD-TYPE
  T1+T2                            1                              4
  T3+T4                           23                             24
D24V5, binary
                                cls
clus                              0  1
  DEL PEAK  8(6Q22.33) MUTATED    6 18
  DEL PEAK  8(6Q22.33) WILD-TYPE  6 22
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  8(6Q22.33) MUTATED      6   18
  DEL PEAK  8(6Q22.33) WILD-TYPE    6   22
   clus
vv  DEL PEAK  8(6Q22.33) MUTATED DEL PEAK  8(6Q22.33) WILD-TYPE
  0                            6                              6
  1                           18                             22
                                vv
clus                             M0 M1 MX
  DEL PEAK  8(6Q22.33) MUTATED   15  2  7
  DEL PEAK  8(6Q22.33) WILD-TYPE 12  0 16
D24V6, multiclass
    clus
vv   DEL PEAK  8(6Q22.33) MUTATED DEL PEAK  8(6Q22.33) WILD-TYPE
  M0                           15                             12
  M1                            2                              0
  MX                            7                             16
D24V7, binary
                                cls
clus                              0  1
  DEL PEAK  8(6Q22.33) MUTATED   12 12
  DEL PEAK  8(6Q22.33) WILD-TYPE 16 12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  8(6Q22.33) MUTATED     12   12
  DEL PEAK  8(6Q22.33) WILD-TYPE   16   12
        clus
vv       DEL PEAK  8(6Q22.33) MUTATED DEL PEAK  8(6Q22.33) WILD-TYPE
  FEMALE                           12                             16
  MALE                             12                             12
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  8(6Q22.33) MUTATED                                    21
  DEL PEAK  8(6Q22.33) WILD-TYPE                                  25
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  8(6Q22.33) MUTATED                                       2
  DEL PEAK  8(6Q22.33) WILD-TYPE                                     2
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  8(6Q22.33) MUTATED                                                  0
  DEL PEAK  8(6Q22.33) WILD-TYPE                                                1
D24V8, multiclass
                                                  clus
vv                                                 DEL PEAK  8(6Q22.33) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        21
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 DEL PEAK  8(6Q22.33) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          25
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D24V9, continuous
D24V10, continuous
                                vv
clus                             R0 R1 RX
  DEL PEAK  8(6Q22.33) MUTATED   11 10  1
  DEL PEAK  8(6Q22.33) WILD-TYPE 17 10  1
D24V11, multiclass
    clus
vv   DEL PEAK  8(6Q22.33) MUTATED DEL PEAK  8(6Q22.33) WILD-TYPE
  R0                           11                             17
  R1                           10                             10
  RX                            1                              1
D24V12, continuous

Clustering(25) Variable = DEL PEAK  9(7Q36.1) MUTATION ANALYSIS
D25V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  9(7Q36.1) MUTATED    3  2
  DEL PEAK  9(7Q36.1) WILD-TYPE 29 15
  DEL PEAK  9(7Q36.1) MUTATED DEL PEAK  9(7Q36.1) WILD-TYPE 
                            5                            44 
  DEL PEAK  9(7Q36.1) MUTATED DEL PEAK  9(7Q36.1) WILD-TYPE 
                            2                            15 
$`DEL PEAK  9(7Q36.1) MUTATED`
TCGA-H6-8124 TCGA-HZ-7922 TCGA-HZ-A4BH TCGA-IB-7646 TCGA-IB-7890 
       12.89         0.13         5.98         4.77        19.66 

$`DEL PEAK  9(7Q36.1) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
        0.13         0.03         7.63         7.86         0.92         0.66 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        12.03         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 
        0.69         3.91         0.92         0.49         0.10         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        2.96         0.76         1.02         1.51        11.41        49.38 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
       21.86        15.35        19.82        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
        3.58        43.79        15.78        16.04         3.85        15.95 
TCGA-IB-8126 TCGA-IB-8127 
        0.56        17.13 

  DEL PEAK  9(7Q36.1) MUTATED DEL PEAK  9(7Q36.1) WILD-TYPE 
                         0.13                          0.03 
  DEL PEAK  9(7Q36.1) MUTATED DEL PEAK  9(7Q36.1) WILD-TYPE 
                        19.66                         49.38 
  DEL PEAK  9(7Q36.1) MUTATED DEL PEAK  9(7Q36.1) WILD-TYPE 
                        5.980                         4.535 
[1] "0.1 - 19.7 (6.0)" "0.0 - 49.4 (4.5)"
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK  9(7Q36.1) MUTATED" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK  9(7Q36.1) WILD-TYPE"   "DEL PEAK  9(7Q36.1) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  9(7Q36.1) WILD-TYPE"   "DEL PEAK  9(7Q36.1) MUTATED" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  9(7Q36.1) WILD-TYPE"   "DEL PEAK  9(7Q36.1) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK  9(7Q36.1) WILD-TYPE"   "DEL PEAK  9(7Q36.1) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-8127 
"DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK  9(7Q36.1) MUTATED" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK  9(7Q36.1) WILD-TYPE"   "DEL PEAK  9(7Q36.1) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  9(7Q36.1) WILD-TYPE"   "DEL PEAK  9(7Q36.1) MUTATED" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  9(7Q36.1) WILD-TYPE"   "DEL PEAK  9(7Q36.1) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK  9(7Q36.1) WILD-TYPE"   "DEL PEAK  9(7Q36.1) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-8127 
"DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK  9(7Q36.1) MUTATED" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK  9(7Q36.1) WILD-TYPE"   "DEL PEAK  9(7Q36.1) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  9(7Q36.1) WILD-TYPE"   "DEL PEAK  9(7Q36.1) MUTATED" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  9(7Q36.1) WILD-TYPE"   "DEL PEAK  9(7Q36.1) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK  9(7Q36.1) WILD-TYPE"   "DEL PEAK  9(7Q36.1) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-8127 
"DEL PEAK  9(7Q36.1) WILD-TYPE" 
[1] "hr=" "1.3"
D25V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK  9(7Q36.1) MUTATED          0        1         0         4         0
  DEL PEAK  9(7Q36.1) WILD-TYPE        2        1         6        34         2
                               vv
clus                            STAGE IV
  DEL PEAK  9(7Q36.1) MUTATED          0
  DEL PEAK  9(7Q36.1) WILD-TYPE        2
D25V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  DEL PEAK  9(7Q36.1) MUTATED       1     4
  DEL PEAK  9(7Q36.1) WILD-TYPE     4    43
D25V4, multiclass
       clus
vv      DEL PEAK  9(7Q36.1) MUTATED DEL PEAK  9(7Q36.1) WILD-TYPE
  T1+T2                           1                             4
  T3+T4                           4                            43
D25V5, binary
                               cls
clus                             0  1
  DEL PEAK  9(7Q36.1) MUTATED    1  4
  DEL PEAK  9(7Q36.1) WILD-TYPE 11 36
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(7Q36.1) MUTATED      1    4
  DEL PEAK  9(7Q36.1) WILD-TYPE   11   36
   clus
vv  DEL PEAK  9(7Q36.1) MUTATED DEL PEAK  9(7Q36.1) WILD-TYPE
  0                           1                            11
  1                           4                            36
                               vv
clus                            M0 M1 MX
  DEL PEAK  9(7Q36.1) MUTATED    3  0  2
  DEL PEAK  9(7Q36.1) WILD-TYPE 24  2 21
D25V6, multiclass
    clus
vv   DEL PEAK  9(7Q36.1) MUTATED DEL PEAK  9(7Q36.1) WILD-TYPE
  M0                           3                            24
  M1                           0                             2
  MX                           2                            21
D25V7, binary
                               cls
clus                             0  1
  DEL PEAK  9(7Q36.1) MUTATED    2  3
  DEL PEAK  9(7Q36.1) WILD-TYPE 26 21
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(7Q36.1) MUTATED      2    3
  DEL PEAK  9(7Q36.1) WILD-TYPE   26   21
        clus
vv       DEL PEAK  9(7Q36.1) MUTATED DEL PEAK  9(7Q36.1) WILD-TYPE
  FEMALE                           2                            26
  MALE                             3                            21
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  9(7Q36.1) MUTATED                                     5
  DEL PEAK  9(7Q36.1) WILD-TYPE                                  41
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  9(7Q36.1) MUTATED                                       0
  DEL PEAK  9(7Q36.1) WILD-TYPE                                     4
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  9(7Q36.1) MUTATED                                                  0
  DEL PEAK  9(7Q36.1) WILD-TYPE                                                1
D25V8, multiclass
                                                  clus
vv                                                 DEL PEAK  9(7Q36.1) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 DEL PEAK  9(7Q36.1) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         41
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D25V9, continuous
[1] "Remove cluster labels:"      "DEL PEAK  9(7Q36.1) MUTATED"
clus
  DEL PEAK  9(7Q36.1) MUTATED DEL PEAK  9(7Q36.1) WILD-TYPE 
                            1                            12 
                   TCGA-F2-6880                    TCGA-FB-A4P5 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-H6-A45N                    TCGA-IB-7644 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7891 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
D25V10, continuous
[1] "Remove cluster labels:"      "DEL PEAK  9(7Q36.1) MUTATED"
clus
  DEL PEAK  9(7Q36.1) MUTATED DEL PEAK  9(7Q36.1) WILD-TYPE 
                            1                             9 
                   TCGA-FB-A4P5                    TCGA-IB-7644 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-8126 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-8127 
"DEL PEAK  9(7Q36.1) WILD-TYPE" 
                               vv
clus                            R0 R1 RX
  DEL PEAK  9(7Q36.1) MUTATED    3  2  0
  DEL PEAK  9(7Q36.1) WILD-TYPE 25 18  2
D25V11, multiclass
    clus
vv   DEL PEAK  9(7Q36.1) MUTATED DEL PEAK  9(7Q36.1) WILD-TYPE
  R0                           3                            25
  R1                           2                            18
  RX                           0                             2
D25V12, continuous

Clustering(26) Variable = DEL PEAK 10(8P21.3) MUTATION ANALYSIS
D26V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 10(8P21.3) MUTATED    8  7
  DEL PEAK 10(8P21.3) WILD-TYPE 24 10
  DEL PEAK 10(8P21.3) MUTATED DEL PEAK 10(8P21.3) WILD-TYPE 
                           15                            34 
  DEL PEAK 10(8P21.3) MUTATED DEL PEAK 10(8P21.3) WILD-TYPE 
                            7                            10 
$`DEL PEAK 10(8P21.3) MUTATED`
TCGA-F2-6879 TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7925 TCGA-HZ-8005 
       10.98         7.86         0.66         0.13        12.03         3.91 
TCGA-HZ-8636 TCGA-HZ-A4BK TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7652 TCGA-IB-7886 
        0.16         1.51         4.77        21.86        15.65         4.04 
TCGA-IB-7887 TCGA-IB-7890 TCGA-IB-8127 
        3.58        19.66        17.13 

$`DEL PEAK 10(8P21.3) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.96        11.84         7.07         5.03         5.19         0.13 
TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7923 TCGA-HZ-7924 
        0.03        12.89         7.63         0.92         0.26        12.13 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.99         0.69         0.92         0.49 
TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 
        0.10         2.96         0.76         1.02         5.98        11.41 
TCGA-IB-7645 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7888 TCGA-IB-7889 
       49.38        15.35        19.82        27.98        43.79        15.78 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       16.04         3.85        15.95         0.56 

  DEL PEAK 10(8P21.3) MUTATED DEL PEAK 10(8P21.3) WILD-TYPE 
                         0.13                          0.03 
  DEL PEAK 10(8P21.3) MUTATED DEL PEAK 10(8P21.3) WILD-TYPE 
                        21.86                         49.38 
  DEL PEAK 10(8P21.3) MUTATED DEL PEAK 10(8P21.3) WILD-TYPE 
                         4.77                          5.11 
[1] "0.1 - 21.9 (4.8)" "0.0 - 49.4 (5.1)"
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
  "DEL PEAK 10(8P21.3) MUTATED"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-8127 
  "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
  "DEL PEAK 10(8P21.3) MUTATED"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-8127 
  "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
  "DEL PEAK 10(8P21.3) MUTATED"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-8127 
  "DEL PEAK 10(8P21.3) MUTATED" 
[1] "hr=" "1.9"
D26V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK 10(8P21.3) MUTATED          0        1         0        13         0
  DEL PEAK 10(8P21.3) WILD-TYPE        2        1         6        25         2
                               vv
clus                            STAGE IV
  DEL PEAK 10(8P21.3) MUTATED          1
  DEL PEAK 10(8P21.3) WILD-TYPE        1
D26V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  DEL PEAK 10(8P21.3) MUTATED       1    14
  DEL PEAK 10(8P21.3) WILD-TYPE     4    33
D26V4, multiclass
       clus
vv      DEL PEAK 10(8P21.3) MUTATED DEL PEAK 10(8P21.3) WILD-TYPE
  T1+T2                           1                             4
  T3+T4                          14                            33
D26V5, binary
                               cls
clus                             0  1
  DEL PEAK 10(8P21.3) MUTATED    2 13
  DEL PEAK 10(8P21.3) WILD-TYPE 10 27
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(8P21.3) MUTATED      2   13
  DEL PEAK 10(8P21.3) WILD-TYPE   10   27
   clus
vv  DEL PEAK 10(8P21.3) MUTATED DEL PEAK 10(8P21.3) WILD-TYPE
  0                           2                            10
  1                          13                            27
                               vv
clus                            M0 M1 MX
  DEL PEAK 10(8P21.3) MUTATED    9  1  5
  DEL PEAK 10(8P21.3) WILD-TYPE 18  1 18
D26V6, multiclass
    clus
vv   DEL PEAK 10(8P21.3) MUTATED DEL PEAK 10(8P21.3) WILD-TYPE
  M0                           9                            18
  M1                           1                             1
  MX                           5                            18
D26V7, binary
                               cls
clus                             0  1
  DEL PEAK 10(8P21.3) MUTATED    6  9
  DEL PEAK 10(8P21.3) WILD-TYPE 22 15
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(8P21.3) MUTATED      6    9
  DEL PEAK 10(8P21.3) WILD-TYPE   22   15
        clus
vv       DEL PEAK 10(8P21.3) MUTATED DEL PEAK 10(8P21.3) WILD-TYPE
  FEMALE                           6                            22
  MALE                             9                            15
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 10(8P21.3) MUTATED                                    12
  DEL PEAK 10(8P21.3) WILD-TYPE                                  34
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 10(8P21.3) MUTATED                                       2
  DEL PEAK 10(8P21.3) WILD-TYPE                                     2
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 10(8P21.3) MUTATED                                                  0
  DEL PEAK 10(8P21.3) WILD-TYPE                                                1
D26V8, multiclass
                                                  clus
vv                                                 DEL PEAK 10(8P21.3) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                       12
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 DEL PEAK 10(8P21.3) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         34
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D26V9, continuous
D26V10, continuous
[1] "Remove cluster labels:"      "DEL PEAK 10(8P21.3) MUTATED"
clus
  DEL PEAK 10(8P21.3) MUTATED DEL PEAK 10(8P21.3) WILD-TYPE 
                            2                             8 
                   TCGA-FB-A4P5                    TCGA-H6-8124 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7649 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7885 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-8126 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                               vv
clus                            R0 R1 RX
  DEL PEAK 10(8P21.3) MUTATED    4 10  1
  DEL PEAK 10(8P21.3) WILD-TYPE 24 10  1
D26V11, multiclass
    clus
vv   DEL PEAK 10(8P21.3) MUTATED DEL PEAK 10(8P21.3) WILD-TYPE
  R0                           4                            24
  R1                          10                            10
  RX                           1                             1
D26V12, continuous

Clustering(27) Variable = DEL PEAK 11(8Q12.1) MUTATION ANALYSIS
D27V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 11(8Q12.1) MUTATED    3  1
  DEL PEAK 11(8Q12.1) WILD-TYPE 29 16
  DEL PEAK 11(8Q12.1) MUTATED DEL PEAK 11(8Q12.1) WILD-TYPE 
                            4                            45 
  DEL PEAK 11(8Q12.1) MUTATED DEL PEAK 11(8Q12.1) WILD-TYPE 
                            1                            16 
$`DEL PEAK 11(8Q12.1) MUTATED`
TCGA-HZ-7925 TCGA-HZ-8636 TCGA-HZ-A4BK TCGA-IB-7647 
       12.03         0.16         1.51        21.86 

$`DEL PEAK 11(8Q12.1) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
        0.13         0.03        12.89         7.63         7.86         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 
        0.66         0.13         0.26        12.13         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.99         0.69         3.91         0.92         0.49         0.10 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 
        2.96         0.76         1.02         5.98        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        15.35        19.82        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.58        43.79        15.78        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       15.95         0.56        17.13 

  DEL PEAK 11(8Q12.1) MUTATED DEL PEAK 11(8Q12.1) WILD-TYPE 
                         0.16                          0.03 
  DEL PEAK 11(8Q12.1) MUTATED DEL PEAK 11(8Q12.1) WILD-TYPE 
                        21.86                         49.38 
  DEL PEAK 11(8Q12.1) MUTATED DEL PEAK 11(8Q12.1) WILD-TYPE 
                         6.77                          5.03 
[1] "0.2 - 21.9 (6.8)" "0.0 - 49.4 (5.0)"
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "DEL PEAK 11(8Q12.1) MUTATED" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 11(8Q12.1) WILD-TYPE"   "DEL PEAK 11(8Q12.1) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
  "DEL PEAK 11(8Q12.1) MUTATED" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
  "DEL PEAK 11(8Q12.1) MUTATED" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-8127 
"DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "DEL PEAK 11(8Q12.1) MUTATED" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 11(8Q12.1) WILD-TYPE"   "DEL PEAK 11(8Q12.1) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
  "DEL PEAK 11(8Q12.1) MUTATED" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
  "DEL PEAK 11(8Q12.1) MUTATED" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-8127 
"DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "DEL PEAK 11(8Q12.1) MUTATED" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 11(8Q12.1) WILD-TYPE"   "DEL PEAK 11(8Q12.1) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
  "DEL PEAK 11(8Q12.1) MUTATED" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
  "DEL PEAK 11(8Q12.1) MUTATED" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-8127 
"DEL PEAK 11(8Q12.1) WILD-TYPE" 
[1] "hr=" "1.8"
D27V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK 11(8Q12.1) MUTATED          0        0         0         3         0
  DEL PEAK 11(8Q12.1) WILD-TYPE        2        2         6        35         2
                               vv
clus                            STAGE IV
  DEL PEAK 11(8Q12.1) MUTATED          1
  DEL PEAK 11(8Q12.1) WILD-TYPE        1
D27V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  DEL PEAK 11(8Q12.1) MUTATED       0     4
  DEL PEAK 11(8Q12.1) WILD-TYPE     5    43
D27V4, multiclass
       clus
vv      DEL PEAK 11(8Q12.1) MUTATED DEL PEAK 11(8Q12.1) WILD-TYPE
  T1+T2                           0                             5
  T3+T4                           4                            43
D27V5, binary
                               cls
clus                             0  1
  DEL PEAK 11(8Q12.1) MUTATED    1  3
  DEL PEAK 11(8Q12.1) WILD-TYPE 11 37
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(8Q12.1) MUTATED      1    3
  DEL PEAK 11(8Q12.1) WILD-TYPE   11   37
   clus
vv  DEL PEAK 11(8Q12.1) MUTATED DEL PEAK 11(8Q12.1) WILD-TYPE
  0                           1                            11
  1                           3                            37
                               vv
clus                            M0 M1 MX
  DEL PEAK 11(8Q12.1) MUTATED    1  1  2
  DEL PEAK 11(8Q12.1) WILD-TYPE 26  1 21
D27V6, multiclass
    clus
vv   DEL PEAK 11(8Q12.1) MUTATED DEL PEAK 11(8Q12.1) WILD-TYPE
  M0                           1                            26
  M1                           1                             1
  MX                           2                            21
D27V7, binary
                               cls
clus                             0  1
  DEL PEAK 11(8Q12.1) MUTATED    2  2
  DEL PEAK 11(8Q12.1) WILD-TYPE 26 22
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(8Q12.1) MUTATED      2    2
  DEL PEAK 11(8Q12.1) WILD-TYPE   26   22
        clus
vv       DEL PEAK 11(8Q12.1) MUTATED DEL PEAK 11(8Q12.1) WILD-TYPE
  FEMALE                           2                            26
  MALE                             2                            22
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 11(8Q12.1) MUTATED                                     3
  DEL PEAK 11(8Q12.1) WILD-TYPE                                  43
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 11(8Q12.1) MUTATED                                       1
  DEL PEAK 11(8Q12.1) WILD-TYPE                                     3
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 11(8Q12.1) MUTATED                                                  0
  DEL PEAK 11(8Q12.1) WILD-TYPE                                                1
D27V8, multiclass
                                                  clus
vv                                                 DEL PEAK 11(8Q12.1) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 DEL PEAK 11(8Q12.1) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         43
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D27V9, continuous
D27V10, continuous
                               vv
clus                            R0 R1 RX
  DEL PEAK 11(8Q12.1) MUTATED    1  3  0
  DEL PEAK 11(8Q12.1) WILD-TYPE 27 17  2
D27V11, multiclass
    clus
vv   DEL PEAK 11(8Q12.1) MUTATED DEL PEAK 11(8Q12.1) WILD-TYPE
  R0                           1                            27
  R1                           3                            17
  RX                           0                             2
D27V12, continuous

Clustering(28) Variable = DEL PEAK 12(9P21.3) MUTATION ANALYSIS
D28V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 12(9P21.3) MUTATED   18  9
  DEL PEAK 12(9P21.3) WILD-TYPE 14  8
  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE 
                           27                            22 
  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE 
                            9                             8 
$`DEL PEAK 12(9P21.3) MUTATED`
TCGA-F2-6879 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-7289 
       10.98         5.03         5.19         0.03        12.89         7.86 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7925 TCGA-HZ-8005 TCGA-HZ-8315 
        0.92         0.66         0.13        12.03         3.91         0.92 
TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 
        0.16         0.76         5.98         1.51        11.41         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.86        15.35        15.65        27.98         4.04         3.58 
TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-8127 
       19.66         3.85        17.13 

$`DEL PEAK 12(9P21.3) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-FB-A4P5 TCGA-H6-A45N TCGA-HZ-7923 
        9.96        11.84         7.07         0.13         7.63         0.26 
TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8317 
       12.13         0.26         0.62         0.99         0.69         0.49 
TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-IB-7645 TCGA-IB-7651 TCGA-IB-7888 
        0.10         2.96         1.02        49.38        19.82        43.79 
TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 
       15.78        16.04        15.95         0.56 

  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE 
                         0.03                          0.10 
  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE 
                        27.98                         49.38 
  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE 
                        5.030                         5.015 
[1] "0.0 - 28.0 (5.0)" "0.1 - 49.4 (5.0)"
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-IB-8127 
  "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-IB-8127 
  "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-IB-8127 
  "DEL PEAK 12(9P21.3) MUTATED" 
[1] "hr=" "1.4"
D28V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK 12(9P21.3) MUTATED          0        1         3        23         0
  DEL PEAK 12(9P21.3) WILD-TYPE        2        1         3        15         2
                               vv
clus                            STAGE IV
  DEL PEAK 12(9P21.3) MUTATED          2
  DEL PEAK 12(9P21.3) WILD-TYPE        0
D28V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  DEL PEAK 12(9P21.3) MUTATED       2    27
  DEL PEAK 12(9P21.3) WILD-TYPE     3    20
D28V4, multiclass
       clus
vv      DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  T1+T2                           2                             3
  T3+T4                          27                            20
D28V5, binary
                               cls
clus                             0  1
  DEL PEAK 12(9P21.3) MUTATED    5 24
  DEL PEAK 12(9P21.3) WILD-TYPE  7 16
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(9P21.3) MUTATED      5   24
  DEL PEAK 12(9P21.3) WILD-TYPE    7   16
   clus
vv  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  0                           5                             7
  1                          24                            16
                               vv
clus                            M0 M1 MX
  DEL PEAK 12(9P21.3) MUTATED   17  2 10
  DEL PEAK 12(9P21.3) WILD-TYPE 10  0 13
D28V6, multiclass
    clus
vv   DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  M0                          17                            10
  M1                           2                             0
  MX                          10                            13
D28V7, binary
                               cls
clus                             0  1
  DEL PEAK 12(9P21.3) MUTATED   15 14
  DEL PEAK 12(9P21.3) WILD-TYPE 13 10
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(9P21.3) MUTATED     15   14
  DEL PEAK 12(9P21.3) WILD-TYPE   13   10
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  FEMALE                          15                            13
  MALE                            14                            10
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 12(9P21.3) MUTATED                                    26
  DEL PEAK 12(9P21.3) WILD-TYPE                                  20
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 12(9P21.3) MUTATED                                       2
  DEL PEAK 12(9P21.3) WILD-TYPE                                     2
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 12(9P21.3) MUTATED                                                  0
  DEL PEAK 12(9P21.3) WILD-TYPE                                                1
D28V8, multiclass
                                                  clus
vv                                                 DEL PEAK 12(9P21.3) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                       26
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 DEL PEAK 12(9P21.3) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         20
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D28V9, continuous
D28V10, continuous
                               vv
clus                            R0 R1 RX
  DEL PEAK 12(9P21.3) MUTATED   10 17  1
  DEL PEAK 12(9P21.3) WILD-TYPE 18  3  1
D28V11, multiclass
    clus
vv   DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  R0                          10                            18
  R1                          17                             3
  RX                           1                             1
D28V12, continuous

Clustering(29) Variable = DEL PEAK 13(10Q23.2) MUTATION ANALYSIS
D29V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 13(10Q23.2) MUTATED    5  5
  DEL PEAK 13(10Q23.2) WILD-TYPE 27 12
  DEL PEAK 13(10Q23.2) MUTATED DEL PEAK 13(10Q23.2) WILD-TYPE 
                            10                             39 
  DEL PEAK 13(10Q23.2) MUTATED DEL PEAK 13(10Q23.2) WILD-TYPE 
                             5                             12 
$`DEL PEAK 13(10Q23.2) MUTATED`
TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-8005 TCGA-IB-7646 
        0.03        12.89         7.86         0.92         3.91         4.77 
TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7890 TCGA-IB-7893 
       27.98         3.58        19.66         3.85 

$`DEL PEAK 13(10Q23.2) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        0.13         7.63         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 
       12.03         0.26         0.62         0.99         0.69         0.92 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.49         0.10         0.16         2.96         0.76         1.02 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 
        5.98         1.51        11.41        49.38        21.86        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 
       19.82        15.65         4.04        43.79        15.78        16.04 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       15.95         0.56        17.13 

  DEL PEAK 13(10Q23.2) MUTATED DEL PEAK 13(10Q23.2) WILD-TYPE 
                          0.03                           0.10 
  DEL PEAK 13(10Q23.2) MUTATED DEL PEAK 13(10Q23.2) WILD-TYPE 
                         27.98                          49.38 
  DEL PEAK 13(10Q23.2) MUTATED DEL PEAK 13(10Q23.2) WILD-TYPE 
                          4.34                           5.19 
[1] "0.0 - 28.0 (4.3)" "0.1 - 49.4 (5.2)"
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 13(10Q23.2) WILD-TYPE"   "DEL PEAK 13(10Q23.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 13(10Q23.2) MUTATED" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 13(10Q23.2) MUTATED"   "DEL PEAK 13(10Q23.2) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 13(10Q23.2) WILD-TYPE"   "DEL PEAK 13(10Q23.2) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 13(10Q23.2) WILD-TYPE"   "DEL PEAK 13(10Q23.2) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
  "DEL PEAK 13(10Q23.2) MUTATED" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
  "DEL PEAK 13(10Q23.2) MUTATED" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"DEL PEAK 13(10Q23.2) WILD-TYPE"   "DEL PEAK 13(10Q23.2) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 13(10Q23.2) WILD-TYPE"   "DEL PEAK 13(10Q23.2) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-IB-8127 
"DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 13(10Q23.2) WILD-TYPE"   "DEL PEAK 13(10Q23.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 13(10Q23.2) MUTATED" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 13(10Q23.2) MUTATED"   "DEL PEAK 13(10Q23.2) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 13(10Q23.2) WILD-TYPE"   "DEL PEAK 13(10Q23.2) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 13(10Q23.2) WILD-TYPE"   "DEL PEAK 13(10Q23.2) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
  "DEL PEAK 13(10Q23.2) MUTATED" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
  "DEL PEAK 13(10Q23.2) MUTATED" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"DEL PEAK 13(10Q23.2) WILD-TYPE"   "DEL PEAK 13(10Q23.2) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 13(10Q23.2) WILD-TYPE"   "DEL PEAK 13(10Q23.2) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-IB-8127 
"DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 13(10Q23.2) WILD-TYPE"   "DEL PEAK 13(10Q23.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 13(10Q23.2) MUTATED" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 13(10Q23.2) MUTATED"   "DEL PEAK 13(10Q23.2) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 13(10Q23.2) WILD-TYPE"   "DEL PEAK 13(10Q23.2) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 13(10Q23.2) WILD-TYPE"   "DEL PEAK 13(10Q23.2) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
  "DEL PEAK 13(10Q23.2) MUTATED" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
  "DEL PEAK 13(10Q23.2) MUTATED" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"DEL PEAK 13(10Q23.2) WILD-TYPE"   "DEL PEAK 13(10Q23.2) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 13(10Q23.2) WILD-TYPE"   "DEL PEAK 13(10Q23.2) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-IB-8127 
"DEL PEAK 13(10Q23.2) WILD-TYPE" 
[1] "hr=" "1.9"
D29V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 13(10Q23.2) MUTATED          0        1         1         8
  DEL PEAK 13(10Q23.2) WILD-TYPE        2        1         5        30
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK 13(10Q23.2) MUTATED           0        0
  DEL PEAK 13(10Q23.2) WILD-TYPE         2        2
D29V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  DEL PEAK 13(10Q23.2) MUTATED       1     9
  DEL PEAK 13(10Q23.2) WILD-TYPE     4    38
D29V4, multiclass
       clus
vv      DEL PEAK 13(10Q23.2) MUTATED DEL PEAK 13(10Q23.2) WILD-TYPE
  T1+T2                            1                              4
  T3+T4                            9                             38
D29V5, binary
                                cls
clus                              0  1
  DEL PEAK 13(10Q23.2) MUTATED    2  8
  DEL PEAK 13(10Q23.2) WILD-TYPE 10 32
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(10Q23.2) MUTATED      2    8
  DEL PEAK 13(10Q23.2) WILD-TYPE   10   32
   clus
vv  DEL PEAK 13(10Q23.2) MUTATED DEL PEAK 13(10Q23.2) WILD-TYPE
  0                            2                             10
  1                            8                             32
                                vv
clus                             M0 M1 MX
  DEL PEAK 13(10Q23.2) MUTATED    8  0  2
  DEL PEAK 13(10Q23.2) WILD-TYPE 19  2 21
D29V6, multiclass
    clus
vv   DEL PEAK 13(10Q23.2) MUTATED DEL PEAK 13(10Q23.2) WILD-TYPE
  M0                            8                             19
  M1                            0                              2
  MX                            2                             21
D29V7, binary
                                cls
clus                              0  1
  DEL PEAK 13(10Q23.2) MUTATED    4  6
  DEL PEAK 13(10Q23.2) WILD-TYPE 24 18
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(10Q23.2) MUTATED      4    6
  DEL PEAK 13(10Q23.2) WILD-TYPE   24   18
        clus
vv       DEL PEAK 13(10Q23.2) MUTATED DEL PEAK 13(10Q23.2) WILD-TYPE
  FEMALE                            4                             24
  MALE                              6                             18
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 13(10Q23.2) MUTATED                                     9
  DEL PEAK 13(10Q23.2) WILD-TYPE                                  37
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 13(10Q23.2) MUTATED                                       1
  DEL PEAK 13(10Q23.2) WILD-TYPE                                     3
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 13(10Q23.2) MUTATED                                                  0
  DEL PEAK 13(10Q23.2) WILD-TYPE                                                1
D29V8, multiclass
                                                  clus
vv                                                 DEL PEAK 13(10Q23.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 DEL PEAK 13(10Q23.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          37
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D29V9, continuous
D29V10, continuous
[1] "Remove cluster labels:"       "DEL PEAK 13(10Q23.2) MUTATED"
clus
  DEL PEAK 13(10Q23.2) MUTATED DEL PEAK 13(10Q23.2) WILD-TYPE 
                             2                              8 
                    TCGA-FB-A4P5                     TCGA-IB-7644 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7891 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                                vv
clus                             R0 R1 RX
  DEL PEAK 13(10Q23.2) MUTATED    5  3  1
  DEL PEAK 13(10Q23.2) WILD-TYPE 23 17  1
D29V11, multiclass
    clus
vv   DEL PEAK 13(10Q23.2) MUTATED DEL PEAK 13(10Q23.2) WILD-TYPE
  R0                            5                             23
  R1                            3                             17
  RX                            1                              1
D29V12, continuous

Clustering(30) Variable = DEL PEAK 14(11P15.4) MUTATION ANALYSIS
D30V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 14(11P15.4) MUTATED    7  3
  DEL PEAK 14(11P15.4) WILD-TYPE 25 14
  DEL PEAK 14(11P15.4) MUTATED DEL PEAK 14(11P15.4) WILD-TYPE 
                            10                             39 
  DEL PEAK 14(11P15.4) MUTATED DEL PEAK 14(11P15.4) WILD-TYPE 
                             3                             14 
$`DEL PEAK 14(11P15.4) MUTATED`
TCGA-F2-A44H TCGA-FB-A545 TCGA-HZ-7918 TCGA-HZ-A4BH TCGA-IB-7645 TCGA-IB-7652 
        5.19         0.03         0.92         5.98        49.38        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-8127 
       27.98         4.04         3.58        17.13 

$`DEL PEAK 14(11P15.4) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.96        11.84         7.07         5.03         0.13 
TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 
       12.89         7.63         7.86         0.66         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        12.03         0.26         0.62         0.99         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 
        3.91         0.92         0.49         0.10         0.16         2.96 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 
        0.76         1.02         1.51        11.41         4.77        21.86 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       15.35        19.82        43.79        15.78        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
        3.85        15.95         0.56 

  DEL PEAK 14(11P15.4) MUTATED DEL PEAK 14(11P15.4) WILD-TYPE 
                          0.03                           0.10 
  DEL PEAK 14(11P15.4) MUTATED DEL PEAK 14(11P15.4) WILD-TYPE 
                         49.38                          43.79 
  DEL PEAK 14(11P15.4) MUTATED DEL PEAK 14(11P15.4) WILD-TYPE 
                         5.585                          4.770 
[1] "0.0 - 49.4 (5.6)" "0.1 - 43.8 (4.8)"
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 14(11P15.4) WILD-TYPE"   "DEL PEAK 14(11P15.4) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 14(11P15.4) WILD-TYPE"   "DEL PEAK 14(11P15.4) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"DEL PEAK 14(11P15.4) WILD-TYPE"   "DEL PEAK 14(11P15.4) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 14(11P15.4) WILD-TYPE"   "DEL PEAK 14(11P15.4) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
  "DEL PEAK 14(11P15.4) MUTATED" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 14(11P15.4) WILD-TYPE"   "DEL PEAK 14(11P15.4) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
  "DEL PEAK 14(11P15.4) MUTATED"   "DEL PEAK 14(11P15.4) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
  "DEL PEAK 14(11P15.4) MUTATED" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-IB-8127 
  "DEL PEAK 14(11P15.4) MUTATED" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 14(11P15.4) WILD-TYPE"   "DEL PEAK 14(11P15.4) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 14(11P15.4) WILD-TYPE"   "DEL PEAK 14(11P15.4) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"DEL PEAK 14(11P15.4) WILD-TYPE"   "DEL PEAK 14(11P15.4) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 14(11P15.4) WILD-TYPE"   "DEL PEAK 14(11P15.4) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
  "DEL PEAK 14(11P15.4) MUTATED" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 14(11P15.4) WILD-TYPE"   "DEL PEAK 14(11P15.4) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
  "DEL PEAK 14(11P15.4) MUTATED"   "DEL PEAK 14(11P15.4) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
  "DEL PEAK 14(11P15.4) MUTATED" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-IB-8127 
  "DEL PEAK 14(11P15.4) MUTATED" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 14(11P15.4) WILD-TYPE"   "DEL PEAK 14(11P15.4) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 14(11P15.4) WILD-TYPE"   "DEL PEAK 14(11P15.4) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"DEL PEAK 14(11P15.4) WILD-TYPE"   "DEL PEAK 14(11P15.4) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 14(11P15.4) WILD-TYPE"   "DEL PEAK 14(11P15.4) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
  "DEL PEAK 14(11P15.4) MUTATED" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 14(11P15.4) WILD-TYPE"   "DEL PEAK 14(11P15.4) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
  "DEL PEAK 14(11P15.4) MUTATED"   "DEL PEAK 14(11P15.4) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
  "DEL PEAK 14(11P15.4) MUTATED" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 14(11P15.4) WILD-TYPE" "DEL PEAK 14(11P15.4) WILD-TYPE" 
                    TCGA-IB-8127 
  "DEL PEAK 14(11P15.4) MUTATED" 
[1] "hr=" "3.1"
D30V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 14(11P15.4) MUTATED          0        0         1         9
  DEL PEAK 14(11P15.4) WILD-TYPE        2        2         5        29
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK 14(11P15.4) MUTATED           0        0
  DEL PEAK 14(11P15.4) WILD-TYPE         2        2
D30V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  DEL PEAK 14(11P15.4) MUTATED       0    10
  DEL PEAK 14(11P15.4) WILD-TYPE     5    37
D30V4, multiclass
       clus
vv      DEL PEAK 14(11P15.4) MUTATED DEL PEAK 14(11P15.4) WILD-TYPE
  T1+T2                            0                              5
  T3+T4                           10                             37
D30V5, binary
                                cls
clus                              0  1
  DEL PEAK 14(11P15.4) MUTATED    1  9
  DEL PEAK 14(11P15.4) WILD-TYPE 11 31
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 14(11P15.4) MUTATED      1    9
  DEL PEAK 14(11P15.4) WILD-TYPE   11   31
   clus
vv  DEL PEAK 14(11P15.4) MUTATED DEL PEAK 14(11P15.4) WILD-TYPE
  0                            1                             11
  1                            9                             31
                                vv
clus                             M0 M1 MX
  DEL PEAK 14(11P15.4) MUTATED    9  0  1
  DEL PEAK 14(11P15.4) WILD-TYPE 18  2 22
D30V6, multiclass
    clus
vv   DEL PEAK 14(11P15.4) MUTATED DEL PEAK 14(11P15.4) WILD-TYPE
  M0                            9                             18
  M1                            0                              2
  MX                            1                             22
D30V7, binary
                                cls
clus                              0  1
  DEL PEAK 14(11P15.4) MUTATED    5  5
  DEL PEAK 14(11P15.4) WILD-TYPE 23 19
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 14(11P15.4) MUTATED      5    5
  DEL PEAK 14(11P15.4) WILD-TYPE   23   19
        clus
vv       DEL PEAK 14(11P15.4) MUTATED DEL PEAK 14(11P15.4) WILD-TYPE
  FEMALE                            5                             23
  MALE                              5                             19
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 14(11P15.4) MUTATED                                    10
  DEL PEAK 14(11P15.4) WILD-TYPE                                  36
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 14(11P15.4) MUTATED                                       0
  DEL PEAK 14(11P15.4) WILD-TYPE                                     4
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 14(11P15.4) MUTATED                                                  0
  DEL PEAK 14(11P15.4) WILD-TYPE                                                1
D30V8, multiclass
                                                  clus
vv                                                 DEL PEAK 14(11P15.4) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        10
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 DEL PEAK 14(11P15.4) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          36
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D30V9, continuous
D30V10, continuous
                                vv
clus                             R0 R1 RX
  DEL PEAK 14(11P15.4) MUTATED    4  5  0
  DEL PEAK 14(11P15.4) WILD-TYPE 24 15  2
D30V11, multiclass
    clus
vv   DEL PEAK 14(11P15.4) MUTATED DEL PEAK 14(11P15.4) WILD-TYPE
  R0                            4                             24
  R1                            5                             15
  RX                            0                              2
D30V12, continuous

Clustering(31) Variable = DEL PEAK 15(12P12.3) MUTATION ANALYSIS
D31V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 15(12P12.3) MUTATED    4  3
  DEL PEAK 15(12P12.3) WILD-TYPE 28 14
  DEL PEAK 15(12P12.3) MUTATED DEL PEAK 15(12P12.3) WILD-TYPE 
                             7                             42 
  DEL PEAK 15(12P12.3) MUTATED DEL PEAK 15(12P12.3) WILD-TYPE 
                             3                             14 
$`DEL PEAK 15(12P12.3) MUTATED`
TCGA-F2-6879 TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-8636 TCGA-HZ-A4BH TCGA-IB-7886 
       10.98         7.86         0.66         0.16         5.98         4.04 
TCGA-IB-7893 
        3.85 

$`DEL PEAK 15(12P12.3) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.96        11.84         7.07         5.03         5.19         0.13 
TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 
        0.03        12.89         7.63         0.92         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        12.03         0.26         0.62         0.99         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G 
        3.91         0.92         0.49         0.10         2.96         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        1.02         1.51        11.41        49.38         4.77        21.86 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 
       15.35        19.82        15.65        27.98         3.58        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       15.78        19.66        16.04        15.95         0.56        17.13 

  DEL PEAK 15(12P12.3) MUTATED DEL PEAK 15(12P12.3) WILD-TYPE 
                          0.16                           0.03 
  DEL PEAK 15(12P12.3) MUTATED DEL PEAK 15(12P12.3) WILD-TYPE 
                         10.98                          49.38 
  DEL PEAK 15(12P12.3) MUTATED DEL PEAK 15(12P12.3) WILD-TYPE 
                          4.04                           5.11 
[1] "0.2 - 11.0 (4.0)" "0.0 - 49.4 (5.1)"
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK 15(12P12.3) MUTATED" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 15(12P12.3) MUTATED" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "DEL PEAK 15(12P12.3) MUTATED" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 15(12P12.3) WILD-TYPE"   "DEL PEAK 15(12P12.3) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 15(12P12.3) WILD-TYPE"   "DEL PEAK 15(12P12.3) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK 15(12P12.3) WILD-TYPE"   "DEL PEAK 15(12P12.3) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 15(12P12.3) WILD-TYPE"   "DEL PEAK 15(12P12.3) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-IB-8127 
"DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK 15(12P12.3) MUTATED" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 15(12P12.3) MUTATED" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "DEL PEAK 15(12P12.3) MUTATED" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 15(12P12.3) WILD-TYPE"   "DEL PEAK 15(12P12.3) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 15(12P12.3) WILD-TYPE"   "DEL PEAK 15(12P12.3) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK 15(12P12.3) WILD-TYPE"   "DEL PEAK 15(12P12.3) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 15(12P12.3) WILD-TYPE"   "DEL PEAK 15(12P12.3) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-IB-8127 
"DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK 15(12P12.3) MUTATED" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 15(12P12.3) MUTATED" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "DEL PEAK 15(12P12.3) MUTATED" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 15(12P12.3) WILD-TYPE"   "DEL PEAK 15(12P12.3) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 15(12P12.3) WILD-TYPE"   "DEL PEAK 15(12P12.3) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK 15(12P12.3) WILD-TYPE"   "DEL PEAK 15(12P12.3) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 15(12P12.3) WILD-TYPE"   "DEL PEAK 15(12P12.3) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-IB-8127 
"DEL PEAK 15(12P12.3) WILD-TYPE" 
[1] "hr=" "4.4"
D31V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 15(12P12.3) MUTATED          0        0         1         6
  DEL PEAK 15(12P12.3) WILD-TYPE        2        2         5        32
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK 15(12P12.3) MUTATED           0        1
  DEL PEAK 15(12P12.3) WILD-TYPE         2        1
D31V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  DEL PEAK 15(12P12.3) MUTATED       0     8
  DEL PEAK 15(12P12.3) WILD-TYPE     5    39
D31V4, multiclass
       clus
vv      DEL PEAK 15(12P12.3) MUTATED DEL PEAK 15(12P12.3) WILD-TYPE
  T1+T2                            0                              5
  T3+T4                            8                             39
D31V5, binary
                                cls
clus                              0  1
  DEL PEAK 15(12P12.3) MUTATED    2  6
  DEL PEAK 15(12P12.3) WILD-TYPE 10 34
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(12P12.3) MUTATED      2    6
  DEL PEAK 15(12P12.3) WILD-TYPE   10   34
   clus
vv  DEL PEAK 15(12P12.3) MUTATED DEL PEAK 15(12P12.3) WILD-TYPE
  0                            2                             10
  1                            6                             34
                                vv
clus                             M0 M1 MX
  DEL PEAK 15(12P12.3) MUTATED    4  1  3
  DEL PEAK 15(12P12.3) WILD-TYPE 23  1 20
D31V6, multiclass
    clus
vv   DEL PEAK 15(12P12.3) MUTATED DEL PEAK 15(12P12.3) WILD-TYPE
  M0                            4                             23
  M1                            1                              1
  MX                            3                             20
D31V7, binary
                                cls
clus                              0  1
  DEL PEAK 15(12P12.3) MUTATED    2  6
  DEL PEAK 15(12P12.3) WILD-TYPE 26 18
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(12P12.3) MUTATED      2    6
  DEL PEAK 15(12P12.3) WILD-TYPE   26   18
        clus
vv       DEL PEAK 15(12P12.3) MUTATED DEL PEAK 15(12P12.3) WILD-TYPE
  FEMALE                            2                             26
  MALE                              6                             18
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 15(12P12.3) MUTATED                                     6
  DEL PEAK 15(12P12.3) WILD-TYPE                                  40
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 15(12P12.3) MUTATED                                       1
  DEL PEAK 15(12P12.3) WILD-TYPE                                     3
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 15(12P12.3) MUTATED                                                  0
  DEL PEAK 15(12P12.3) WILD-TYPE                                                1
D31V8, multiclass
                                                  clus
vv                                                 DEL PEAK 15(12P12.3) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 DEL PEAK 15(12P12.3) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          40
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D31V9, continuous
[1] "Remove cluster labels:"       "DEL PEAK 15(12P12.3) MUTATED"
clus
  DEL PEAK 15(12P12.3) MUTATED DEL PEAK 15(12P12.3) WILD-TYPE 
                             1                             12 
                    TCGA-F2-6880                     TCGA-FB-A4P5 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7649 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7885 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7891 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
D31V10, continuous
[1] "Remove cluster labels:"       "DEL PEAK 15(12P12.3) MUTATED"
clus
  DEL PEAK 15(12P12.3) MUTATED DEL PEAK 15(12P12.3) WILD-TYPE 
                             1                              9 
                    TCGA-FB-A4P5                     TCGA-H6-8124 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7649 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7885 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-8126 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-IB-8127 
"DEL PEAK 15(12P12.3) WILD-TYPE" 
                                vv
clus                             R0 R1 RX
  DEL PEAK 15(12P12.3) MUTATED    2  5  1
  DEL PEAK 15(12P12.3) WILD-TYPE 26 15  1
D31V11, multiclass
    clus
vv   DEL PEAK 15(12P12.3) MUTATED DEL PEAK 15(12P12.3) WILD-TYPE
  R0                            2                             26
  R1                            5                             15
  RX                            1                              1
D31V12, continuous

Clustering(32) Variable = DEL PEAK 16(12Q12) MUTATION ANALYSIS
D32V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 16(12Q12) MUTATED    3  4
  DEL PEAK 16(12Q12) WILD-TYPE 29 13
  DEL PEAK 16(12Q12) MUTATED DEL PEAK 16(12Q12) WILD-TYPE 
                           7                           42 
  DEL PEAK 16(12Q12) MUTATED DEL PEAK 16(12Q12) WILD-TYPE 
                           4                           13 
$`DEL PEAK 16(12Q12) MUTATED`
TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-8636 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7890 
        0.03        12.89         0.16         4.04         3.58        19.66 
TCGA-IB-7893 
        3.85 

$`DEL PEAK 16(12Q12) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
        0.13         7.63         7.86         0.92         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        12.03         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 
        0.69         3.91         0.92         0.49         0.10         2.96 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         1.02         5.98         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
        4.77        21.86        15.35        19.82        15.65        27.98 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       43.79        15.78        16.04        15.95         0.56        17.13 

  DEL PEAK 16(12Q12) MUTATED DEL PEAK 16(12Q12) WILD-TYPE 
                        0.03                         0.10 
  DEL PEAK 16(12Q12) MUTATED DEL PEAK 16(12Q12) WILD-TYPE 
                       19.66                        49.38 
  DEL PEAK 16(12Q12) MUTATED DEL PEAK 16(12Q12) WILD-TYPE 
                       3.850                        5.585 
[1] "0.0 - 19.7 (3.9)" "0.1 - 49.4 (5.6)"
                  TCGA-F2-6879                   TCGA-F2-6880 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-F2-7273                   TCGA-F2-7276 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-F2-A44G                   TCGA-F2-A44H 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-FB-A4P5                   TCGA-FB-A545 
"DEL PEAK 16(12Q12) WILD-TYPE"   "DEL PEAK 16(12Q12) MUTATED" 
                  TCGA-H6-8124                   TCGA-H6-A45N 
  "DEL PEAK 16(12Q12) MUTATED" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-HZ-7289                   TCGA-HZ-7918 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-HZ-7919                   TCGA-HZ-7922 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-HZ-7923                   TCGA-HZ-7924 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-HZ-7925                   TCGA-HZ-7926 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-HZ-8001                   TCGA-HZ-8002 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-HZ-8003                   TCGA-HZ-8005 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-HZ-8315                   TCGA-HZ-8317 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-HZ-8519                   TCGA-HZ-8636 
"DEL PEAK 16(12Q12) WILD-TYPE"   "DEL PEAK 16(12Q12) MUTATED" 
                  TCGA-HZ-8638                   TCGA-HZ-A49G 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-HZ-A49H                   TCGA-HZ-A4BH 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-HZ-A4BK                   TCGA-IB-7644 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-IB-7645                   TCGA-IB-7646 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-IB-7647                   TCGA-IB-7649 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-IB-7651                   TCGA-IB-7652 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-IB-7885                   TCGA-IB-7886 
"DEL PEAK 16(12Q12) WILD-TYPE"   "DEL PEAK 16(12Q12) MUTATED" 
                  TCGA-IB-7887                   TCGA-IB-7888 
  "DEL PEAK 16(12Q12) MUTATED" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-IB-7889                   TCGA-IB-7890 
"DEL PEAK 16(12Q12) WILD-TYPE"   "DEL PEAK 16(12Q12) MUTATED" 
                  TCGA-IB-7891                   TCGA-IB-7893 
"DEL PEAK 16(12Q12) WILD-TYPE"   "DEL PEAK 16(12Q12) MUTATED" 
                  TCGA-IB-7897                   TCGA-IB-8126 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-IB-8127 
"DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-F2-6879                   TCGA-F2-6880 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-F2-7273                   TCGA-F2-7276 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-F2-A44G                   TCGA-F2-A44H 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-FB-A4P5                   TCGA-FB-A545 
"DEL PEAK 16(12Q12) WILD-TYPE"   "DEL PEAK 16(12Q12) MUTATED" 
                  TCGA-H6-8124                   TCGA-H6-A45N 
  "DEL PEAK 16(12Q12) MUTATED" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-HZ-7289                   TCGA-HZ-7918 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-HZ-7919                   TCGA-HZ-7922 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-HZ-7923                   TCGA-HZ-7924 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-HZ-7925                   TCGA-HZ-7926 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-HZ-8001                   TCGA-HZ-8002 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-HZ-8003                   TCGA-HZ-8005 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-HZ-8315                   TCGA-HZ-8317 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-HZ-8519                   TCGA-HZ-8636 
"DEL PEAK 16(12Q12) WILD-TYPE"   "DEL PEAK 16(12Q12) MUTATED" 
                  TCGA-HZ-8638                   TCGA-HZ-A49G 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-HZ-A49H                   TCGA-HZ-A4BH 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-HZ-A4BK                   TCGA-IB-7644 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-IB-7645                   TCGA-IB-7646 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-IB-7647                   TCGA-IB-7649 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-IB-7651                   TCGA-IB-7652 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-IB-7885                   TCGA-IB-7886 
"DEL PEAK 16(12Q12) WILD-TYPE"   "DEL PEAK 16(12Q12) MUTATED" 
                  TCGA-IB-7887                   TCGA-IB-7888 
  "DEL PEAK 16(12Q12) MUTATED" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-IB-7889                   TCGA-IB-7890 
"DEL PEAK 16(12Q12) WILD-TYPE"   "DEL PEAK 16(12Q12) MUTATED" 
                  TCGA-IB-7891                   TCGA-IB-7893 
"DEL PEAK 16(12Q12) WILD-TYPE"   "DEL PEAK 16(12Q12) MUTATED" 
                  TCGA-IB-7897                   TCGA-IB-8126 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-IB-8127 
"DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-F2-6879                   TCGA-F2-6880 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-F2-7273                   TCGA-F2-7276 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-F2-A44G                   TCGA-F2-A44H 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-FB-A4P5                   TCGA-FB-A545 
"DEL PEAK 16(12Q12) WILD-TYPE"   "DEL PEAK 16(12Q12) MUTATED" 
                  TCGA-H6-8124                   TCGA-H6-A45N 
  "DEL PEAK 16(12Q12) MUTATED" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-HZ-7289                   TCGA-HZ-7918 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-HZ-7919                   TCGA-HZ-7922 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-HZ-7923                   TCGA-HZ-7924 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-HZ-7925                   TCGA-HZ-7926 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-HZ-8001                   TCGA-HZ-8002 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-HZ-8003                   TCGA-HZ-8005 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-HZ-8315                   TCGA-HZ-8317 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-HZ-8519                   TCGA-HZ-8636 
"DEL PEAK 16(12Q12) WILD-TYPE"   "DEL PEAK 16(12Q12) MUTATED" 
                  TCGA-HZ-8638                   TCGA-HZ-A49G 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-HZ-A49H                   TCGA-HZ-A4BH 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-HZ-A4BK                   TCGA-IB-7644 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-IB-7645                   TCGA-IB-7646 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-IB-7647                   TCGA-IB-7649 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-IB-7651                   TCGA-IB-7652 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-IB-7885                   TCGA-IB-7886 
"DEL PEAK 16(12Q12) WILD-TYPE"   "DEL PEAK 16(12Q12) MUTATED" 
                  TCGA-IB-7887                   TCGA-IB-7888 
  "DEL PEAK 16(12Q12) MUTATED" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-IB-7889                   TCGA-IB-7890 
"DEL PEAK 16(12Q12) WILD-TYPE"   "DEL PEAK 16(12Q12) MUTATED" 
                  TCGA-IB-7891                   TCGA-IB-7893 
"DEL PEAK 16(12Q12) WILD-TYPE"   "DEL PEAK 16(12Q12) MUTATED" 
                  TCGA-IB-7897                   TCGA-IB-8126 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-IB-8127 
"DEL PEAK 16(12Q12) WILD-TYPE" 
[1] "hr=" "3.5"
D32V2, continuous
                              vv
clus                           STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK 16(12Q12) MUTATED          0        1         1         4         0
  DEL PEAK 16(12Q12) WILD-TYPE        2        1         5        34         2
                              vv
clus                           STAGE IV
  DEL PEAK 16(12Q12) MUTATED          1
  DEL PEAK 16(12Q12) WILD-TYPE        1
D32V3, multiclass
                              vv
clus                           T1+T2 T3+T4
  DEL PEAK 16(12Q12) MUTATED       1     6
  DEL PEAK 16(12Q12) WILD-TYPE     4    41
D32V4, multiclass
       clus
vv      DEL PEAK 16(12Q12) MUTATED DEL PEAK 16(12Q12) WILD-TYPE
  T1+T2                          1                            4
  T3+T4                          6                           41
D32V5, binary
                              cls
clus                            0  1
  DEL PEAK 16(12Q12) MUTATED    3  4
  DEL PEAK 16(12Q12) WILD-TYPE  9 36
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 16(12Q12) MUTATED      3    4
  DEL PEAK 16(12Q12) WILD-TYPE    9   36
   clus
vv  DEL PEAK 16(12Q12) MUTATED DEL PEAK 16(12Q12) WILD-TYPE
  0                          3                            9
  1                          4                           36
                              vv
clus                           M0 M1 MX
  DEL PEAK 16(12Q12) MUTATED    6  1  0
  DEL PEAK 16(12Q12) WILD-TYPE 21  1 23
D32V6, multiclass
    clus
vv   DEL PEAK 16(12Q12) MUTATED DEL PEAK 16(12Q12) WILD-TYPE
  M0                          6                           21
  M1                          1                            1
  MX                          0                           23
D32V7, binary
                              cls
clus                            0  1
  DEL PEAK 16(12Q12) MUTATED    4  3
  DEL PEAK 16(12Q12) WILD-TYPE 24 21
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 16(12Q12) MUTATED      4    3
  DEL PEAK 16(12Q12) WILD-TYPE   24   21
        clus
vv       DEL PEAK 16(12Q12) MUTATED DEL PEAK 16(12Q12) WILD-TYPE
  FEMALE                          4                           24
  MALE                            3                           21
                              vv
clus                           PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 16(12Q12) MUTATED                                     7
  DEL PEAK 16(12Q12) WILD-TYPE                                  39
                              vv
clus                           PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 16(12Q12) MUTATED                                       0
  DEL PEAK 16(12Q12) WILD-TYPE                                     4
                              vv
clus                           PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 16(12Q12) MUTATED                                                  0
  DEL PEAK 16(12Q12) WILD-TYPE                                                1
D32V8, multiclass
                                                  clus
vv                                                 DEL PEAK 16(12Q12) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                       7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                     0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                          0
                                                  clus
vv                                                 DEL PEAK 16(12Q12) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        39
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            1
D32V9, continuous
D32V10, continuous
[1] "Remove cluster labels:"     "DEL PEAK 16(12Q12) MUTATED"
clus
  DEL PEAK 16(12Q12) MUTATED DEL PEAK 16(12Q12) WILD-TYPE 
                           2                            8 
                  TCGA-FB-A4P5                   TCGA-IB-7644 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-IB-7649                   TCGA-IB-7651 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-IB-7885                   TCGA-IB-7891 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                  TCGA-IB-8126                   TCGA-IB-8127 
"DEL PEAK 16(12Q12) WILD-TYPE" "DEL PEAK 16(12Q12) WILD-TYPE" 
                              vv
clus                           R0 R1 RX
  DEL PEAK 16(12Q12) MUTATED    3  3  0
  DEL PEAK 16(12Q12) WILD-TYPE 25 17  2
D32V11, multiclass
    clus
vv   DEL PEAK 16(12Q12) MUTATED DEL PEAK 16(12Q12) WILD-TYPE
  R0                          3                           25
  R1                          3                           17
  RX                          0                            2
D32V12, continuous

Clustering(33) Variable = DEL PEAK 17(12Q24.31) MUTATION ANALYSIS
D33V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 17(12Q24.31) MUTATED    7  4
  DEL PEAK 17(12Q24.31) WILD-TYPE 25 13
  DEL PEAK 17(12Q24.31) MUTATED DEL PEAK 17(12Q24.31) WILD-TYPE 
                             11                              38 
  DEL PEAK 17(12Q24.31) MUTATED DEL PEAK 17(12Q24.31) WILD-TYPE 
                              4                              13 
$`DEL PEAK 17(12Q24.31) MUTATED`
TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7922 TCGA-HZ-8636 TCGA-IB-7652 TCGA-IB-7885 
       12.89         7.86         0.13         0.16        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-8127 
        4.04         3.58        19.66         3.85        17.13 

$`DEL PEAK 17(12Q24.31) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7923 
        0.13         0.03         7.63         0.92         0.66         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        12.03         0.26         0.62         0.99         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G 
        3.91         0.92         0.49         0.10         2.96         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        1.02         5.98         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 
       21.86        15.35        19.82        43.79        15.78        16.04 
TCGA-IB-7897 TCGA-IB-8126 
       15.95         0.56 

  DEL PEAK 17(12Q24.31) MUTATED DEL PEAK 17(12Q24.31) WILD-TYPE 
                           0.13                            0.03 
  DEL PEAK 17(12Q24.31) MUTATED DEL PEAK 17(12Q24.31) WILD-TYPE 
                          27.98                           49.38 
  DEL PEAK 17(12Q24.31) MUTATED DEL PEAK 17(12Q24.31) WILD-TYPE 
                           7.86                            4.90 
[1] "0.1 - 28.0 (7.9)" "0.0 - 49.4 (4.9)"
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
  "DEL PEAK 17(12Q24.31) MUTATED" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
  "DEL PEAK 17(12Q24.31) MUTATED" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"DEL PEAK 17(12Q24.31) WILD-TYPE"   "DEL PEAK 17(12Q24.31) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 17(12Q24.31) WILD-TYPE"   "DEL PEAK 17(12Q24.31) MUTATED" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"DEL PEAK 17(12Q24.31) WILD-TYPE"   "DEL PEAK 17(12Q24.31) MUTATED" 
                     TCGA-IB-7885                      TCGA-IB-7886 
  "DEL PEAK 17(12Q24.31) MUTATED"   "DEL PEAK 17(12Q24.31) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
  "DEL PEAK 17(12Q24.31) MUTATED" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"DEL PEAK 17(12Q24.31) WILD-TYPE"   "DEL PEAK 17(12Q24.31) MUTATED" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"DEL PEAK 17(12Q24.31) WILD-TYPE"   "DEL PEAK 17(12Q24.31) MUTATED" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-IB-8127 
  "DEL PEAK 17(12Q24.31) MUTATED" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
  "DEL PEAK 17(12Q24.31) MUTATED" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
  "DEL PEAK 17(12Q24.31) MUTATED" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"DEL PEAK 17(12Q24.31) WILD-TYPE"   "DEL PEAK 17(12Q24.31) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 17(12Q24.31) WILD-TYPE"   "DEL PEAK 17(12Q24.31) MUTATED" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"DEL PEAK 17(12Q24.31) WILD-TYPE"   "DEL PEAK 17(12Q24.31) MUTATED" 
                     TCGA-IB-7885                      TCGA-IB-7886 
  "DEL PEAK 17(12Q24.31) MUTATED"   "DEL PEAK 17(12Q24.31) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
  "DEL PEAK 17(12Q24.31) MUTATED" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"DEL PEAK 17(12Q24.31) WILD-TYPE"   "DEL PEAK 17(12Q24.31) MUTATED" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"DEL PEAK 17(12Q24.31) WILD-TYPE"   "DEL PEAK 17(12Q24.31) MUTATED" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-IB-8127 
  "DEL PEAK 17(12Q24.31) MUTATED" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
  "DEL PEAK 17(12Q24.31) MUTATED" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
  "DEL PEAK 17(12Q24.31) MUTATED" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"DEL PEAK 17(12Q24.31) WILD-TYPE"   "DEL PEAK 17(12Q24.31) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 17(12Q24.31) WILD-TYPE"   "DEL PEAK 17(12Q24.31) MUTATED" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"DEL PEAK 17(12Q24.31) WILD-TYPE"   "DEL PEAK 17(12Q24.31) MUTATED" 
                     TCGA-IB-7885                      TCGA-IB-7886 
  "DEL PEAK 17(12Q24.31) MUTATED"   "DEL PEAK 17(12Q24.31) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
  "DEL PEAK 17(12Q24.31) MUTATED" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"DEL PEAK 17(12Q24.31) WILD-TYPE"   "DEL PEAK 17(12Q24.31) MUTATED" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"DEL PEAK 17(12Q24.31) WILD-TYPE"   "DEL PEAK 17(12Q24.31) MUTATED" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"DEL PEAK 17(12Q24.31) WILD-TYPE" "DEL PEAK 17(12Q24.31) WILD-TYPE" 
                     TCGA-IB-8127 
  "DEL PEAK 17(12Q24.31) MUTATED" 
[1] "hr=" "1.1"
D33V2, continuous
                                 vv
clus                              STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 17(12Q24.31) MUTATED          0        1         1         9
  DEL PEAK 17(12Q24.31) WILD-TYPE        2        1         5        29
                                 vv
clus                              STAGE III STAGE IV
  DEL PEAK 17(12Q24.31) MUTATED           0        1
  DEL PEAK 17(12Q24.31) WILD-TYPE         2        1
D33V3, multiclass
                                 vv
clus                              T1+T2 T3+T4
  DEL PEAK 17(12Q24.31) MUTATED       1    11
  DEL PEAK 17(12Q24.31) WILD-TYPE     4    36
D33V4, multiclass
       clus
vv      DEL PEAK 17(12Q24.31) MUTATED DEL PEAK 17(12Q24.31) WILD-TYPE
  T1+T2                             1                               4
  T3+T4                            11                              36
D33V5, binary
                                 cls
clus                               0  1
  DEL PEAK 17(12Q24.31) MUTATED    3  9
  DEL PEAK 17(12Q24.31) WILD-TYPE  9 31
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 17(12Q24.31) MUTATED      3    9
  DEL PEAK 17(12Q24.31) WILD-TYPE    9   31
   clus
vv  DEL PEAK 17(12Q24.31) MUTATED DEL PEAK 17(12Q24.31) WILD-TYPE
  0                             3                               9
  1                             9                              31
                                 vv
clus                              M0 M1 MX
  DEL PEAK 17(12Q24.31) MUTATED    8  1  3
  DEL PEAK 17(12Q24.31) WILD-TYPE 19  1 20
D33V6, multiclass
    clus
vv   DEL PEAK 17(12Q24.31) MUTATED DEL PEAK 17(12Q24.31) WILD-TYPE
  M0                             8                              19
  M1                             1                               1
  MX                             3                              20
D33V7, binary
                                 cls
clus                               0  1
  DEL PEAK 17(12Q24.31) MUTATED    6  6
  DEL PEAK 17(12Q24.31) WILD-TYPE 22 18
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 17(12Q24.31) MUTATED      6    6
  DEL PEAK 17(12Q24.31) WILD-TYPE   22   18
        clus
vv       DEL PEAK 17(12Q24.31) MUTATED DEL PEAK 17(12Q24.31) WILD-TYPE
  FEMALE                             6                              22
  MALE                               6                              18
                                 vv
clus                              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 17(12Q24.31) MUTATED                                    11
  DEL PEAK 17(12Q24.31) WILD-TYPE                                  35
                                 vv
clus                              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 17(12Q24.31) MUTATED                                       1
  DEL PEAK 17(12Q24.31) WILD-TYPE                                     3
                                 vv
clus                              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 17(12Q24.31) MUTATED                                                  0
  DEL PEAK 17(12Q24.31) WILD-TYPE                                                1
D33V8, multiclass
                                                  clus
vv                                                 DEL PEAK 17(12Q24.31) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         11
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             0
                                                  clus
vv                                                 DEL PEAK 17(12Q24.31) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                           35
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                               1
D33V9, continuous
D33V10, continuous
                                 vv
clus                              R0 R1 RX
  DEL PEAK 17(12Q24.31) MUTATED    5  6  1
  DEL PEAK 17(12Q24.31) WILD-TYPE 23 14  1
D33V11, multiclass
    clus
vv   DEL PEAK 17(12Q24.31) MUTATED DEL PEAK 17(12Q24.31) WILD-TYPE
  R0                             5                              23
  R1                             6                              14
  RX                             1                               1
D33V12, continuous

Clustering(34) Variable = DEL PEAK 18(15Q15.1) MUTATION ANALYSIS
D34V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 18(15Q15.1) MUTATED    6  3
  DEL PEAK 18(15Q15.1) WILD-TYPE 26 14
  DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE 
                             9                             40 
  DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE 
                             3                             14 
$`DEL PEAK 18(15Q15.1) MUTATED`
TCGA-FB-A545 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-8005 TCGA-IB-7644 
        0.03         7.86         0.92         0.13         3.91        11.41 
TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-8127 
       19.66         3.85        17.13 

$`DEL PEAK 18(15Q15.1) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 
        0.13        12.89         7.63         0.66         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 
       12.03         0.26         0.62         0.99         0.69         0.92 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.49         0.10         0.16         2.96         0.76         1.02 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        5.98         1.51        49.38         4.77        21.86        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       19.82        15.65        27.98         4.04         3.58        43.79 
TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 
       15.78        16.04        15.95         0.56 

  DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE 
                          0.03                           0.10 
  DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE 
                         19.66                          49.38 
  DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE 
                          3.91                           5.11 
[1] "0.0 - 19.7 (3.9)" "0.1 - 49.4 (5.1)"
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 18(15Q15.1) WILD-TYPE"   "DEL PEAK 18(15Q15.1) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 18(15Q15.1) MUTATED"   "DEL PEAK 18(15Q15.1) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK 18(15Q15.1) WILD-TYPE"   "DEL PEAK 18(15Q15.1) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 18(15Q15.1) WILD-TYPE"   "DEL PEAK 18(15Q15.1) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK 18(15Q15.1) WILD-TYPE"   "DEL PEAK 18(15Q15.1) MUTATED" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"DEL PEAK 18(15Q15.1) WILD-TYPE"   "DEL PEAK 18(15Q15.1) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 18(15Q15.1) WILD-TYPE"   "DEL PEAK 18(15Q15.1) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-IB-8127 
  "DEL PEAK 18(15Q15.1) MUTATED" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 18(15Q15.1) WILD-TYPE"   "DEL PEAK 18(15Q15.1) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 18(15Q15.1) MUTATED"   "DEL PEAK 18(15Q15.1) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK 18(15Q15.1) WILD-TYPE"   "DEL PEAK 18(15Q15.1) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 18(15Q15.1) WILD-TYPE"   "DEL PEAK 18(15Q15.1) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK 18(15Q15.1) WILD-TYPE"   "DEL PEAK 18(15Q15.1) MUTATED" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"DEL PEAK 18(15Q15.1) WILD-TYPE"   "DEL PEAK 18(15Q15.1) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 18(15Q15.1) WILD-TYPE"   "DEL PEAK 18(15Q15.1) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-IB-8127 
  "DEL PEAK 18(15Q15.1) MUTATED" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 18(15Q15.1) WILD-TYPE"   "DEL PEAK 18(15Q15.1) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 18(15Q15.1) MUTATED"   "DEL PEAK 18(15Q15.1) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK 18(15Q15.1) WILD-TYPE"   "DEL PEAK 18(15Q15.1) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 18(15Q15.1) WILD-TYPE"   "DEL PEAK 18(15Q15.1) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK 18(15Q15.1) WILD-TYPE"   "DEL PEAK 18(15Q15.1) MUTATED" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"DEL PEAK 18(15Q15.1) WILD-TYPE"   "DEL PEAK 18(15Q15.1) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 18(15Q15.1) WILD-TYPE"   "DEL PEAK 18(15Q15.1) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-IB-8127 
  "DEL PEAK 18(15Q15.1) MUTATED" 
[1] "hr=" "1.4"
D34V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 18(15Q15.1) MUTATED          0        1         1         6
  DEL PEAK 18(15Q15.1) WILD-TYPE        2        1         5        32
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK 18(15Q15.1) MUTATED           0        1
  DEL PEAK 18(15Q15.1) WILD-TYPE         2        1
D34V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  DEL PEAK 18(15Q15.1) MUTATED       1     8
  DEL PEAK 18(15Q15.1) WILD-TYPE     4    39
D34V4, multiclass
       clus
vv      DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE
  T1+T2                            1                              4
  T3+T4                            8                             39
D34V5, binary
                                cls
clus                              0  1
  DEL PEAK 18(15Q15.1) MUTATED    2  7
  DEL PEAK 18(15Q15.1) WILD-TYPE 10 33
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(15Q15.1) MUTATED      2    7
  DEL PEAK 18(15Q15.1) WILD-TYPE   10   33
   clus
vv  DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE
  0                            2                             10
  1                            7                             33
                                vv
clus                             M0 M1 MX
  DEL PEAK 18(15Q15.1) MUTATED    5  1  3
  DEL PEAK 18(15Q15.1) WILD-TYPE 22  1 20
D34V6, multiclass
    clus
vv   DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE
  M0                            5                             22
  M1                            1                              1
  MX                            3                             20
D34V7, binary
                                cls
clus                              0  1
  DEL PEAK 18(15Q15.1) MUTATED    3  6
  DEL PEAK 18(15Q15.1) WILD-TYPE 25 18
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(15Q15.1) MUTATED      3    6
  DEL PEAK 18(15Q15.1) WILD-TYPE   25   18
        clus
vv       DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE
  FEMALE                            3                             25
  MALE                              6                             18
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 18(15Q15.1) MUTATED                                     8
  DEL PEAK 18(15Q15.1) WILD-TYPE                                  38
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 18(15Q15.1) MUTATED                                       1
  DEL PEAK 18(15Q15.1) WILD-TYPE                                     3
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 18(15Q15.1) MUTATED                                                  0
  DEL PEAK 18(15Q15.1) WILD-TYPE                                                1
D34V8, multiclass
                                                  clus
vv                                                 DEL PEAK 18(15Q15.1) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 DEL PEAK 18(15Q15.1) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          38
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D34V9, continuous
[1] "Remove cluster labels:"       "DEL PEAK 18(15Q15.1) MUTATED"
clus
  DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE 
                             2                             11 
                    TCGA-F2-6880                     TCGA-FB-A4P5 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7891 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-IB-8126 
"DEL PEAK 18(15Q15.1) WILD-TYPE" 
D34V10, continuous
[1] "Remove cluster labels:"       "DEL PEAK 18(15Q15.1) MUTATED"
clus
  DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE 
                             2                              8 
                    TCGA-FB-A4P5                     TCGA-H6-8124 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-8126 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                                vv
clus                             R0 R1 RX
  DEL PEAK 18(15Q15.1) MUTATED    4  3  1
  DEL PEAK 18(15Q15.1) WILD-TYPE 24 17  1
D34V11, multiclass
    clus
vv   DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE
  R0                            4                             24
  R1                            3                             17
  RX                            1                              1
D34V12, continuous

Clustering(35) Variable = DEL PEAK 19(17P11.2) MUTATION ANALYSIS
D35V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 19(17P11.2) MUTATED   13  6
  DEL PEAK 19(17P11.2) WILD-TYPE 19 11
  DEL PEAK 19(17P11.2) MUTATED DEL PEAK 19(17P11.2) WILD-TYPE 
                            19                             30 
  DEL PEAK 19(17P11.2) MUTATED DEL PEAK 19(17P11.2) WILD-TYPE 
                             6                             11 
$`DEL PEAK 19(17P11.2) MUTATED`
TCGA-F2-6879 TCGA-F2-A44G TCGA-FB-A545 TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7922 
       10.98         5.03         0.03         7.86         0.66         0.13 
TCGA-HZ-8001 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.62         3.91         0.92         0.16         5.98         1.51 
TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7889 TCGA-IB-7893 
       11.41         4.77        15.65         4.04        15.78         3.85 
TCGA-IB-8127 
       17.13 

$`DEL PEAK 19(17P11.2) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A4P5 TCGA-H6-8124 
        9.96        11.84         7.07         5.19         0.13        12.89 
TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        7.63         0.92         0.26        12.13        12.03         0.26 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.99         0.69         0.49         0.10         2.96         0.76 
TCGA-HZ-A49H TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7885 
        1.02        49.38        21.86        15.35        19.82        27.98 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 
        3.58        43.79        19.66        16.04        15.95         0.56 

  DEL PEAK 19(17P11.2) MUTATED DEL PEAK 19(17P11.2) WILD-TYPE 
                          0.03                           0.10 
  DEL PEAK 19(17P11.2) MUTATED DEL PEAK 19(17P11.2) WILD-TYPE 
                         17.13                          49.38 
  DEL PEAK 19(17P11.2) MUTATED DEL PEAK 19(17P11.2) WILD-TYPE 
                          4.04                           7.35 
[1] "0.0 - 17.1 (4.0)" "0.1 - 49.4 (7.3)"
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK 19(17P11.2) MUTATED" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
  "DEL PEAK 19(17P11.2) MUTATED" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 19(17P11.2) WILD-TYPE"   "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 19(17P11.2) MUTATED" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "DEL PEAK 19(17P11.2) MUTATED"   "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
  "DEL PEAK 19(17P11.2) MUTATED" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 19(17P11.2) WILD-TYPE"   "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
  "DEL PEAK 19(17P11.2) MUTATED" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 19(17P11.2) WILD-TYPE"   "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 19(17P11.2) WILD-TYPE"   "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "DEL PEAK 19(17P11.2) MUTATED"   "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 19(17P11.2) WILD-TYPE"   "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 19(17P11.2) WILD-TYPE"   "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK 19(17P11.2) WILD-TYPE"   "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK 19(17P11.2) MUTATED" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 19(17P11.2) WILD-TYPE"   "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-IB-8127 
  "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK 19(17P11.2) MUTATED" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
  "DEL PEAK 19(17P11.2) MUTATED" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 19(17P11.2) WILD-TYPE"   "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 19(17P11.2) MUTATED" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "DEL PEAK 19(17P11.2) MUTATED"   "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
  "DEL PEAK 19(17P11.2) MUTATED" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 19(17P11.2) WILD-TYPE"   "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
  "DEL PEAK 19(17P11.2) MUTATED" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 19(17P11.2) WILD-TYPE"   "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 19(17P11.2) WILD-TYPE"   "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "DEL PEAK 19(17P11.2) MUTATED"   "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 19(17P11.2) WILD-TYPE"   "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 19(17P11.2) WILD-TYPE"   "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK 19(17P11.2) WILD-TYPE"   "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK 19(17P11.2) MUTATED" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 19(17P11.2) WILD-TYPE"   "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-IB-8127 
  "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK 19(17P11.2) MUTATED" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
  "DEL PEAK 19(17P11.2) MUTATED" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 19(17P11.2) WILD-TYPE"   "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 19(17P11.2) MUTATED" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "DEL PEAK 19(17P11.2) MUTATED"   "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
  "DEL PEAK 19(17P11.2) MUTATED" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 19(17P11.2) WILD-TYPE"   "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
  "DEL PEAK 19(17P11.2) MUTATED" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 19(17P11.2) WILD-TYPE"   "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 19(17P11.2) WILD-TYPE"   "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "DEL PEAK 19(17P11.2) MUTATED"   "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 19(17P11.2) WILD-TYPE"   "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 19(17P11.2) WILD-TYPE"   "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK 19(17P11.2) WILD-TYPE"   "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK 19(17P11.2) MUTATED" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 19(17P11.2) WILD-TYPE"   "DEL PEAK 19(17P11.2) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-IB-8127 
  "DEL PEAK 19(17P11.2) MUTATED" 
[1] "hr=" "2.5"
D35V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 19(17P11.2) MUTATED          0        0         2        14
  DEL PEAK 19(17P11.2) WILD-TYPE        2        2         4        24
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK 19(17P11.2) MUTATED           1        2
  DEL PEAK 19(17P11.2) WILD-TYPE         1        0
D35V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  DEL PEAK 19(17P11.2) MUTATED       0    19
  DEL PEAK 19(17P11.2) WILD-TYPE     5    28
D35V4, multiclass
       clus
vv      DEL PEAK 19(17P11.2) MUTATED DEL PEAK 19(17P11.2) WILD-TYPE
  T1+T2                            0                              5
  T3+T4                           19                             28
D35V5, binary
                                cls
clus                              0  1
  DEL PEAK 19(17P11.2) MUTATED    4 15
  DEL PEAK 19(17P11.2) WILD-TYPE  8 25
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(17P11.2) MUTATED      4   15
  DEL PEAK 19(17P11.2) WILD-TYPE    8   25
   clus
vv  DEL PEAK 19(17P11.2) MUTATED DEL PEAK 19(17P11.2) WILD-TYPE
  0                            4                              8
  1                           15                             25
                                vv
clus                             M0 M1 MX
  DEL PEAK 19(17P11.2) MUTATED   10  2  7
  DEL PEAK 19(17P11.2) WILD-TYPE 17  0 16
D35V6, multiclass
    clus
vv   DEL PEAK 19(17P11.2) MUTATED DEL PEAK 19(17P11.2) WILD-TYPE
  M0                           10                             17
  M1                            2                              0
  MX                            7                             16
D35V7, binary
                                cls
clus                              0  1
  DEL PEAK 19(17P11.2) MUTATED    9 10
  DEL PEAK 19(17P11.2) WILD-TYPE 19 14
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(17P11.2) MUTATED      9   10
  DEL PEAK 19(17P11.2) WILD-TYPE   19   14
        clus
vv       DEL PEAK 19(17P11.2) MUTATED DEL PEAK 19(17P11.2) WILD-TYPE
  FEMALE                            9                             19
  MALE                             10                             14
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 19(17P11.2) MUTATED                                    16
  DEL PEAK 19(17P11.2) WILD-TYPE                                  30
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 19(17P11.2) MUTATED                                       2
  DEL PEAK 19(17P11.2) WILD-TYPE                                     2
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 19(17P11.2) MUTATED                                                  0
  DEL PEAK 19(17P11.2) WILD-TYPE                                                1
D35V8, multiclass
                                                  clus
vv                                                 DEL PEAK 19(17P11.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        16
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 DEL PEAK 19(17P11.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          30
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D35V9, continuous
D35V10, continuous
                                vv
clus                             R0 R1 RX
  DEL PEAK 19(17P11.2) MUTATED    5 12  1
  DEL PEAK 19(17P11.2) WILD-TYPE 23  8  1
D35V11, multiclass
    clus
vv   DEL PEAK 19(17P11.2) MUTATED DEL PEAK 19(17P11.2) WILD-TYPE
  R0                            5                             23
  R1                           12                              8
  RX                            1                              1
D35V12, continuous

Clustering(36) Variable = DEL PEAK 20(17Q22) MUTATION ANALYSIS
D36V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 20(17Q22) MUTATED    9  6
  DEL PEAK 20(17Q22) WILD-TYPE 23 11
  DEL PEAK 20(17Q22) MUTATED DEL PEAK 20(17Q22) WILD-TYPE 
                          15                           34 
  DEL PEAK 20(17Q22) MUTATED DEL PEAK 20(17Q22) WILD-TYPE 
                           6                           11 
$`DEL PEAK 20(17Q22) MUTATED`
TCGA-F2-6879 TCGA-FB-A545 TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-8005 
       10.98         0.03         7.86         0.66         0.13         3.91 
TCGA-HZ-8636 TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7652 TCGA-IB-7886 
        0.16         5.98        11.41         4.77        15.65         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-8127 
        3.58        43.79        17.13 

$`DEL PEAK 20(17Q22) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.96        11.84         7.07         5.03         5.19         0.13 
TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
       12.89         7.63         0.92         0.26        12.13        12.03 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.99         0.69         0.92         0.49 
TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7645 
        0.10         2.96         0.76         1.02         1.51        49.38 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7889 TCGA-IB-7890 
       21.86        15.35        19.82        27.98        15.78        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       16.04         3.85        15.95         0.56 

  DEL PEAK 20(17Q22) MUTATED DEL PEAK 20(17Q22) WILD-TYPE 
                        0.03                         0.10 
  DEL PEAK 20(17Q22) MUTATED DEL PEAK 20(17Q22) WILD-TYPE 
                       43.79                        49.38 
  DEL PEAK 20(17Q22) MUTATED DEL PEAK 20(17Q22) WILD-TYPE 
                        4.77                         5.11 
[1] "0.0 - 43.8 (4.8)" "0.1 - 49.4 (5.1)"
                  TCGA-F2-6879                   TCGA-F2-6880 
  "DEL PEAK 20(17Q22) MUTATED" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-F2-7273                   TCGA-F2-7276 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-F2-A44G                   TCGA-F2-A44H 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-FB-A4P5                   TCGA-FB-A545 
"DEL PEAK 20(17Q22) WILD-TYPE"   "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-H6-8124                   TCGA-H6-A45N 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-HZ-7289                   TCGA-HZ-7918 
  "DEL PEAK 20(17Q22) MUTATED" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-HZ-7919                   TCGA-HZ-7922 
  "DEL PEAK 20(17Q22) MUTATED"   "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-HZ-7923                   TCGA-HZ-7924 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-HZ-7925                   TCGA-HZ-7926 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-HZ-8001                   TCGA-HZ-8002 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-HZ-8003                   TCGA-HZ-8005 
"DEL PEAK 20(17Q22) WILD-TYPE"   "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-HZ-8315                   TCGA-HZ-8317 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-HZ-8519                   TCGA-HZ-8636 
"DEL PEAK 20(17Q22) WILD-TYPE"   "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-HZ-8638                   TCGA-HZ-A49G 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-HZ-A49H                   TCGA-HZ-A4BH 
"DEL PEAK 20(17Q22) WILD-TYPE"   "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-HZ-A4BK                   TCGA-IB-7644 
"DEL PEAK 20(17Q22) WILD-TYPE"   "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-IB-7645                   TCGA-IB-7646 
"DEL PEAK 20(17Q22) WILD-TYPE"   "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-IB-7647                   TCGA-IB-7649 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-IB-7651                   TCGA-IB-7652 
"DEL PEAK 20(17Q22) WILD-TYPE"   "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-IB-7885                   TCGA-IB-7886 
"DEL PEAK 20(17Q22) WILD-TYPE"   "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-IB-7887                   TCGA-IB-7888 
  "DEL PEAK 20(17Q22) MUTATED"   "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-IB-7889                   TCGA-IB-7890 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-IB-7891                   TCGA-IB-7893 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-IB-7897                   TCGA-IB-8126 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-IB-8127 
  "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-F2-6879                   TCGA-F2-6880 
  "DEL PEAK 20(17Q22) MUTATED" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-F2-7273                   TCGA-F2-7276 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-F2-A44G                   TCGA-F2-A44H 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-FB-A4P5                   TCGA-FB-A545 
"DEL PEAK 20(17Q22) WILD-TYPE"   "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-H6-8124                   TCGA-H6-A45N 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-HZ-7289                   TCGA-HZ-7918 
  "DEL PEAK 20(17Q22) MUTATED" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-HZ-7919                   TCGA-HZ-7922 
  "DEL PEAK 20(17Q22) MUTATED"   "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-HZ-7923                   TCGA-HZ-7924 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-HZ-7925                   TCGA-HZ-7926 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-HZ-8001                   TCGA-HZ-8002 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-HZ-8003                   TCGA-HZ-8005 
"DEL PEAK 20(17Q22) WILD-TYPE"   "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-HZ-8315                   TCGA-HZ-8317 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-HZ-8519                   TCGA-HZ-8636 
"DEL PEAK 20(17Q22) WILD-TYPE"   "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-HZ-8638                   TCGA-HZ-A49G 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-HZ-A49H                   TCGA-HZ-A4BH 
"DEL PEAK 20(17Q22) WILD-TYPE"   "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-HZ-A4BK                   TCGA-IB-7644 
"DEL PEAK 20(17Q22) WILD-TYPE"   "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-IB-7645                   TCGA-IB-7646 
"DEL PEAK 20(17Q22) WILD-TYPE"   "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-IB-7647                   TCGA-IB-7649 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-IB-7651                   TCGA-IB-7652 
"DEL PEAK 20(17Q22) WILD-TYPE"   "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-IB-7885                   TCGA-IB-7886 
"DEL PEAK 20(17Q22) WILD-TYPE"   "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-IB-7887                   TCGA-IB-7888 
  "DEL PEAK 20(17Q22) MUTATED"   "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-IB-7889                   TCGA-IB-7890 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-IB-7891                   TCGA-IB-7893 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-IB-7897                   TCGA-IB-8126 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-IB-8127 
  "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-F2-6879                   TCGA-F2-6880 
  "DEL PEAK 20(17Q22) MUTATED" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-F2-7273                   TCGA-F2-7276 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-F2-A44G                   TCGA-F2-A44H 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-FB-A4P5                   TCGA-FB-A545 
"DEL PEAK 20(17Q22) WILD-TYPE"   "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-H6-8124                   TCGA-H6-A45N 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-HZ-7289                   TCGA-HZ-7918 
  "DEL PEAK 20(17Q22) MUTATED" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-HZ-7919                   TCGA-HZ-7922 
  "DEL PEAK 20(17Q22) MUTATED"   "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-HZ-7923                   TCGA-HZ-7924 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-HZ-7925                   TCGA-HZ-7926 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-HZ-8001                   TCGA-HZ-8002 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-HZ-8003                   TCGA-HZ-8005 
"DEL PEAK 20(17Q22) WILD-TYPE"   "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-HZ-8315                   TCGA-HZ-8317 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-HZ-8519                   TCGA-HZ-8636 
"DEL PEAK 20(17Q22) WILD-TYPE"   "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-HZ-8638                   TCGA-HZ-A49G 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-HZ-A49H                   TCGA-HZ-A4BH 
"DEL PEAK 20(17Q22) WILD-TYPE"   "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-HZ-A4BK                   TCGA-IB-7644 
"DEL PEAK 20(17Q22) WILD-TYPE"   "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-IB-7645                   TCGA-IB-7646 
"DEL PEAK 20(17Q22) WILD-TYPE"   "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-IB-7647                   TCGA-IB-7649 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-IB-7651                   TCGA-IB-7652 
"DEL PEAK 20(17Q22) WILD-TYPE"   "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-IB-7885                   TCGA-IB-7886 
"DEL PEAK 20(17Q22) WILD-TYPE"   "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-IB-7887                   TCGA-IB-7888 
  "DEL PEAK 20(17Q22) MUTATED"   "DEL PEAK 20(17Q22) MUTATED" 
                  TCGA-IB-7889                   TCGA-IB-7890 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-IB-7891                   TCGA-IB-7893 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-IB-7897                   TCGA-IB-8126 
"DEL PEAK 20(17Q22) WILD-TYPE" "DEL PEAK 20(17Q22) WILD-TYPE" 
                  TCGA-IB-8127 
  "DEL PEAK 20(17Q22) MUTATED" 
[1] "hr=" "1.5"
D36V2, continuous
                              vv
clus                           STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK 20(17Q22) MUTATED          0        0         1        12         0
  DEL PEAK 20(17Q22) WILD-TYPE        2        2         5        26         2
                              vv
clus                           STAGE IV
  DEL PEAK 20(17Q22) MUTATED          2
  DEL PEAK 20(17Q22) WILD-TYPE        0
D36V3, multiclass
                              vv
clus                           T1+T2 T3+T4
  DEL PEAK 20(17Q22) MUTATED       0    15
  DEL PEAK 20(17Q22) WILD-TYPE     5    32
D36V4, multiclass
       clus
vv      DEL PEAK 20(17Q22) MUTATED DEL PEAK 20(17Q22) WILD-TYPE
  T1+T2                          0                            5
  T3+T4                         15                           32
D36V5, binary
                              cls
clus                            0  1
  DEL PEAK 20(17Q22) MUTATED    2 13
  DEL PEAK 20(17Q22) WILD-TYPE 10 27
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 20(17Q22) MUTATED      2   13
  DEL PEAK 20(17Q22) WILD-TYPE   10   27
   clus
vv  DEL PEAK 20(17Q22) MUTATED DEL PEAK 20(17Q22) WILD-TYPE
  0                          2                           10
  1                         13                           27
                              vv
clus                           M0 M1 MX
  DEL PEAK 20(17Q22) MUTATED    9  2  4
  DEL PEAK 20(17Q22) WILD-TYPE 18  0 19
D36V6, multiclass
    clus
vv   DEL PEAK 20(17Q22) MUTATED DEL PEAK 20(17Q22) WILD-TYPE
  M0                          9                           18
  M1                          2                            0
  MX                          4                           19
D36V7, binary
                              cls
clus                            0  1
  DEL PEAK 20(17Q22) MUTATED    8  7
  DEL PEAK 20(17Q22) WILD-TYPE 20 17
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 20(17Q22) MUTATED      8    7
  DEL PEAK 20(17Q22) WILD-TYPE   20   17
        clus
vv       DEL PEAK 20(17Q22) MUTATED DEL PEAK 20(17Q22) WILD-TYPE
  FEMALE                          8                           20
  MALE                            7                           17
                              vv
clus                           PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 20(17Q22) MUTATED                                    13
  DEL PEAK 20(17Q22) WILD-TYPE                                  33
                              vv
clus                           PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 20(17Q22) MUTATED                                       1
  DEL PEAK 20(17Q22) WILD-TYPE                                     3
                              vv
clus                           PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 20(17Q22) MUTATED                                                  0
  DEL PEAK 20(17Q22) WILD-TYPE                                                1
D36V8, multiclass
                                                  clus
vv                                                 DEL PEAK 20(17Q22) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                      13
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                     1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                          0
                                                  clus
vv                                                 DEL PEAK 20(17Q22) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        33
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            1
D36V9, continuous
D36V10, continuous
                              vv
clus                           R0 R1 RX
  DEL PEAK 20(17Q22) MUTATED    3 10  1
  DEL PEAK 20(17Q22) WILD-TYPE 25 10  1
D36V11, multiclass
    clus
vv   DEL PEAK 20(17Q22) MUTATED DEL PEAK 20(17Q22) WILD-TYPE
  R0                          3                           25
  R1                         10                           10
  RX                          1                            1
D36V12, continuous

Clustering(37) Variable = DEL PEAK 21(18P11.32) MUTATION ANALYSIS
D37V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 21(18P11.32) MUTATED   11  5
  DEL PEAK 21(18P11.32) WILD-TYPE 21 12
  DEL PEAK 21(18P11.32) MUTATED DEL PEAK 21(18P11.32) WILD-TYPE 
                             16                              33 
  DEL PEAK 21(18P11.32) MUTATED DEL PEAK 21(18P11.32) WILD-TYPE 
                              5                              12 
$`DEL PEAK 21(18P11.32) MUTATED`
TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A545 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7926 
        5.03         5.19         0.03         7.63         0.92         0.26 
TCGA-HZ-8001 TCGA-HZ-8315 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7649 
        0.62         0.92         0.76         5.98         1.51        15.35 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04        15.78        19.66 

$`DEL PEAK 21(18P11.32) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-FB-A4P5 TCGA-H6-8124 
       10.98         9.96        11.84         7.07         0.13        12.89 
TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        7.86         0.66         0.13         0.26        12.13        12.03 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 
        0.99         0.69         3.91         0.49         0.10         0.16 
TCGA-HZ-8638 TCGA-HZ-A49H TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        2.96         1.02        11.41        49.38         4.77        21.86 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7891 TCGA-IB-7893 
       19.82        15.65         3.58        43.79        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       15.95         0.56        17.13 

  DEL PEAK 21(18P11.32) MUTATED DEL PEAK 21(18P11.32) WILD-TYPE 
                           0.03                            0.10 
  DEL PEAK 21(18P11.32) MUTATED DEL PEAK 21(18P11.32) WILD-TYPE 
                          27.98                           49.38 
  DEL PEAK 21(18P11.32) MUTATED DEL PEAK 21(18P11.32) WILD-TYPE 
                          4.535                           7.070 
[1] "0.0 - 28.0 (4.5)" "0.1 - 49.4 (7.1)"
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
  "DEL PEAK 21(18P11.32) MUTATED"   "DEL PEAK 21(18P11.32) MUTATED" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 21(18P11.32) WILD-TYPE"   "DEL PEAK 21(18P11.32) MUTATED" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"DEL PEAK 21(18P11.32) WILD-TYPE"   "DEL PEAK 21(18P11.32) MUTATED" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"DEL PEAK 21(18P11.32) WILD-TYPE"   "DEL PEAK 21(18P11.32) MUTATED" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 21(18P11.32) WILD-TYPE"   "DEL PEAK 21(18P11.32) MUTATED" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
  "DEL PEAK 21(18P11.32) MUTATED" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
  "DEL PEAK 21(18P11.32) MUTATED" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"DEL PEAK 21(18P11.32) WILD-TYPE"   "DEL PEAK 21(18P11.32) MUTATED" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"DEL PEAK 21(18P11.32) WILD-TYPE"   "DEL PEAK 21(18P11.32) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
  "DEL PEAK 21(18P11.32) MUTATED" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"DEL PEAK 21(18P11.32) WILD-TYPE"   "DEL PEAK 21(18P11.32) MUTATED" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
  "DEL PEAK 21(18P11.32) MUTATED"   "DEL PEAK 21(18P11.32) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
  "DEL PEAK 21(18P11.32) MUTATED"   "DEL PEAK 21(18P11.32) MUTATED" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-IB-8127 
"DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
  "DEL PEAK 21(18P11.32) MUTATED"   "DEL PEAK 21(18P11.32) MUTATED" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 21(18P11.32) WILD-TYPE"   "DEL PEAK 21(18P11.32) MUTATED" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"DEL PEAK 21(18P11.32) WILD-TYPE"   "DEL PEAK 21(18P11.32) MUTATED" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"DEL PEAK 21(18P11.32) WILD-TYPE"   "DEL PEAK 21(18P11.32) MUTATED" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 21(18P11.32) WILD-TYPE"   "DEL PEAK 21(18P11.32) MUTATED" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
  "DEL PEAK 21(18P11.32) MUTATED" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
  "DEL PEAK 21(18P11.32) MUTATED" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"DEL PEAK 21(18P11.32) WILD-TYPE"   "DEL PEAK 21(18P11.32) MUTATED" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"DEL PEAK 21(18P11.32) WILD-TYPE"   "DEL PEAK 21(18P11.32) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
  "DEL PEAK 21(18P11.32) MUTATED" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"DEL PEAK 21(18P11.32) WILD-TYPE"   "DEL PEAK 21(18P11.32) MUTATED" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
  "DEL PEAK 21(18P11.32) MUTATED"   "DEL PEAK 21(18P11.32) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
  "DEL PEAK 21(18P11.32) MUTATED"   "DEL PEAK 21(18P11.32) MUTATED" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-IB-8127 
"DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
  "DEL PEAK 21(18P11.32) MUTATED"   "DEL PEAK 21(18P11.32) MUTATED" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 21(18P11.32) WILD-TYPE"   "DEL PEAK 21(18P11.32) MUTATED" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"DEL PEAK 21(18P11.32) WILD-TYPE"   "DEL PEAK 21(18P11.32) MUTATED" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"DEL PEAK 21(18P11.32) WILD-TYPE"   "DEL PEAK 21(18P11.32) MUTATED" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 21(18P11.32) WILD-TYPE"   "DEL PEAK 21(18P11.32) MUTATED" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
  "DEL PEAK 21(18P11.32) MUTATED" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
  "DEL PEAK 21(18P11.32) MUTATED" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"DEL PEAK 21(18P11.32) WILD-TYPE"   "DEL PEAK 21(18P11.32) MUTATED" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"DEL PEAK 21(18P11.32) WILD-TYPE"   "DEL PEAK 21(18P11.32) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
  "DEL PEAK 21(18P11.32) MUTATED" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"DEL PEAK 21(18P11.32) WILD-TYPE"   "DEL PEAK 21(18P11.32) MUTATED" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
  "DEL PEAK 21(18P11.32) MUTATED"   "DEL PEAK 21(18P11.32) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
  "DEL PEAK 21(18P11.32) MUTATED"   "DEL PEAK 21(18P11.32) MUTATED" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"DEL PEAK 21(18P11.32) WILD-TYPE" "DEL PEAK 21(18P11.32) WILD-TYPE" 
                     TCGA-IB-8127 
"DEL PEAK 21(18P11.32) WILD-TYPE" 
[1] "hr=" "1.3"
D37V2, continuous
                                 vv
clus                              STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 21(18P11.32) MUTATED          0        1         2        13
  DEL PEAK 21(18P11.32) WILD-TYPE        2        1         4        25
                                 vv
clus                              STAGE III STAGE IV
  DEL PEAK 21(18P11.32) MUTATED           1        0
  DEL PEAK 21(18P11.32) WILD-TYPE         1        2
D37V3, multiclass
                                 vv
clus                              T1+T2 T3+T4
  DEL PEAK 21(18P11.32) MUTATED       2    15
  DEL PEAK 21(18P11.32) WILD-TYPE     3    32
D37V4, multiclass
       clus
vv      DEL PEAK 21(18P11.32) MUTATED DEL PEAK 21(18P11.32) WILD-TYPE
  T1+T2                             2                               3
  T3+T4                            15                              32
D37V5, binary
                                 cls
clus                               0  1
  DEL PEAK 21(18P11.32) MUTATED    4 13
  DEL PEAK 21(18P11.32) WILD-TYPE  8 27
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 21(18P11.32) MUTATED      4   13
  DEL PEAK 21(18P11.32) WILD-TYPE    8   27
   clus
vv  DEL PEAK 21(18P11.32) MUTATED DEL PEAK 21(18P11.32) WILD-TYPE
  0                             4                               8
  1                            13                              27
                                 vv
clus                              M0 M1 MX
  DEL PEAK 21(18P11.32) MUTATED    9  0  8
  DEL PEAK 21(18P11.32) WILD-TYPE 18  2 15
D37V6, multiclass
    clus
vv   DEL PEAK 21(18P11.32) MUTATED DEL PEAK 21(18P11.32) WILD-TYPE
  M0                             9                              18
  M1                             0                               2
  MX                             8                              15
D37V7, binary
                                 cls
clus                               0  1
  DEL PEAK 21(18P11.32) MUTATED    9  8
  DEL PEAK 21(18P11.32) WILD-TYPE 19 16
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 21(18P11.32) MUTATED      9    8
  DEL PEAK 21(18P11.32) WILD-TYPE   19   16
        clus
vv       DEL PEAK 21(18P11.32) MUTATED DEL PEAK 21(18P11.32) WILD-TYPE
  FEMALE                             9                              19
  MALE                               8                              16
                                 vv
clus                              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 21(18P11.32) MUTATED                                    15
  DEL PEAK 21(18P11.32) WILD-TYPE                                  31
                                 vv
clus                              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 21(18P11.32) MUTATED                                       2
  DEL PEAK 21(18P11.32) WILD-TYPE                                     2
                                 vv
clus                              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 21(18P11.32) MUTATED                                                  0
  DEL PEAK 21(18P11.32) WILD-TYPE                                                1
D37V8, multiclass
                                                  clus
vv                                                 DEL PEAK 21(18P11.32) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         15
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             0
                                                  clus
vv                                                 DEL PEAK 21(18P11.32) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                           31
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                          2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                               1
D37V9, continuous
D37V10, continuous
                                 vv
clus                              R0 R1 RX
  DEL PEAK 21(18P11.32) MUTATED    7  7  1
  DEL PEAK 21(18P11.32) WILD-TYPE 21 13  1
D37V11, multiclass
    clus
vv   DEL PEAK 21(18P11.32) MUTATED DEL PEAK 21(18P11.32) WILD-TYPE
  R0                             7                              21
  R1                             7                              13
  RX                             1                               1
D37V12, continuous

Clustering(38) Variable = DEL PEAK 22(18Q12.1) MUTATION ANALYSIS
D38V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 22(18Q12.1) MUTATED   18  7
  DEL PEAK 22(18Q12.1) WILD-TYPE 14 10
  DEL PEAK 22(18Q12.1) MUTATED DEL PEAK 22(18Q12.1) WILD-TYPE 
                            25                             24 
  DEL PEAK 22(18Q12.1) MUTATED DEL PEAK 22(18Q12.1) WILD-TYPE 
                             7                             10 
$`DEL PEAK 22(18Q12.1) MUTATED`
TCGA-F2-6879 TCGA-F2-A44H TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 
       10.98         5.19         0.03        12.89         7.63         7.86 
TCGA-HZ-7919 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8315 TCGA-HZ-8636 
        0.66        12.03         0.26         0.62         0.92         0.16 
TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
        0.76         5.98         1.51        21.86        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 
       27.98        15.78        19.66        16.04         3.85         0.56 
TCGA-IB-8127 
       17.13 

$`DEL PEAK 22(18Q12.1) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-HZ-7918 
        9.96        11.84         7.07         5.03         0.13         0.92 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
        0.13         0.26        12.13         0.99         0.69         3.91 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-IB-7644 TCGA-IB-7645 
        0.49         0.10         2.96         1.02        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7651 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7897 
        4.77        19.82         4.04         3.58        43.79        15.95 

  DEL PEAK 22(18Q12.1) MUTATED DEL PEAK 22(18Q12.1) WILD-TYPE 
                          0.03                           0.10 
  DEL PEAK 22(18Q12.1) MUTATED DEL PEAK 22(18Q12.1) WILD-TYPE 
                         27.98                          49.38 
  DEL PEAK 22(18Q12.1) MUTATED DEL PEAK 22(18Q12.1) WILD-TYPE 
                         7.630                          3.975 
[1] "0.0 - 28.0 (7.6)" "0.1 - 49.4 (4.0)"
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK 22(18Q12.1) MUTATED" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 22(18Q12.1) WILD-TYPE" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 22(18Q12.1) WILD-TYPE"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 22(18Q12.1) WILD-TYPE"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 22(18Q12.1) MUTATED"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 22(18Q12.1) MUTATED" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "DEL PEAK 22(18Q12.1) MUTATED" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 22(18Q12.1) WILD-TYPE" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "DEL PEAK 22(18Q12.1) MUTATED"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
  "DEL PEAK 22(18Q12.1) MUTATED" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 22(18Q12.1) WILD-TYPE" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
  "DEL PEAK 22(18Q12.1) MUTATED" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 22(18Q12.1) WILD-TYPE"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 22(18Q12.1) WILD-TYPE"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 22(18Q12.1) WILD-TYPE"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "DEL PEAK 22(18Q12.1) MUTATED" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 22(18Q12.1) WILD-TYPE" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "DEL PEAK 22(18Q12.1) MUTATED"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 22(18Q12.1) WILD-TYPE"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
  "DEL PEAK 22(18Q12.1) MUTATED" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK 22(18Q12.1) WILD-TYPE" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK 22(18Q12.1) MUTATED"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
  "DEL PEAK 22(18Q12.1) MUTATED"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 22(18Q12.1) WILD-TYPE"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-IB-8127 
  "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK 22(18Q12.1) MUTATED" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 22(18Q12.1) WILD-TYPE" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 22(18Q12.1) WILD-TYPE"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 22(18Q12.1) WILD-TYPE"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 22(18Q12.1) MUTATED"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 22(18Q12.1) MUTATED" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "DEL PEAK 22(18Q12.1) MUTATED" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 22(18Q12.1) WILD-TYPE" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "DEL PEAK 22(18Q12.1) MUTATED"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
  "DEL PEAK 22(18Q12.1) MUTATED" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 22(18Q12.1) WILD-TYPE" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
  "DEL PEAK 22(18Q12.1) MUTATED" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 22(18Q12.1) WILD-TYPE"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 22(18Q12.1) WILD-TYPE"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 22(18Q12.1) WILD-TYPE"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "DEL PEAK 22(18Q12.1) MUTATED" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 22(18Q12.1) WILD-TYPE" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "DEL PEAK 22(18Q12.1) MUTATED"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 22(18Q12.1) WILD-TYPE"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
  "DEL PEAK 22(18Q12.1) MUTATED" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK 22(18Q12.1) WILD-TYPE" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK 22(18Q12.1) MUTATED"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
  "DEL PEAK 22(18Q12.1) MUTATED"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 22(18Q12.1) WILD-TYPE"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-IB-8127 
  "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK 22(18Q12.1) MUTATED" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 22(18Q12.1) WILD-TYPE" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 22(18Q12.1) WILD-TYPE"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 22(18Q12.1) WILD-TYPE"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 22(18Q12.1) MUTATED"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 22(18Q12.1) MUTATED" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "DEL PEAK 22(18Q12.1) MUTATED" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 22(18Q12.1) WILD-TYPE" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "DEL PEAK 22(18Q12.1) MUTATED"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
  "DEL PEAK 22(18Q12.1) MUTATED" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 22(18Q12.1) WILD-TYPE" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
  "DEL PEAK 22(18Q12.1) MUTATED" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 22(18Q12.1) WILD-TYPE"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 22(18Q12.1) WILD-TYPE"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 22(18Q12.1) WILD-TYPE"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "DEL PEAK 22(18Q12.1) MUTATED" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 22(18Q12.1) WILD-TYPE" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "DEL PEAK 22(18Q12.1) MUTATED"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 22(18Q12.1) WILD-TYPE"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
  "DEL PEAK 22(18Q12.1) MUTATED" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK 22(18Q12.1) WILD-TYPE" "DEL PEAK 22(18Q12.1) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK 22(18Q12.1) MUTATED"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
  "DEL PEAK 22(18Q12.1) MUTATED"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 22(18Q12.1) WILD-TYPE"   "DEL PEAK 22(18Q12.1) MUTATED" 
                    TCGA-IB-8127 
  "DEL PEAK 22(18Q12.1) MUTATED" 
[1] "hr=" "1.5"
D38V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 22(18Q12.1) MUTATED          0        1         3        20
  DEL PEAK 22(18Q12.1) WILD-TYPE        2        1         3        18
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK 22(18Q12.1) MUTATED           2        1
  DEL PEAK 22(18Q12.1) WILD-TYPE         0        1
D38V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  DEL PEAK 22(18Q12.1) MUTATED       2    25
  DEL PEAK 22(18Q12.1) WILD-TYPE     3    22
D38V4, multiclass
       clus
vv      DEL PEAK 22(18Q12.1) MUTATED DEL PEAK 22(18Q12.1) WILD-TYPE
  T1+T2                            2                              3
  T3+T4                           25                             22
D38V5, binary
                                cls
clus                              0  1
  DEL PEAK 22(18Q12.1) MUTATED    6 21
  DEL PEAK 22(18Q12.1) WILD-TYPE  6 19
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(18Q12.1) MUTATED      6   21
  DEL PEAK 22(18Q12.1) WILD-TYPE    6   19
   clus
vv  DEL PEAK 22(18Q12.1) MUTATED DEL PEAK 22(18Q12.1) WILD-TYPE
  0                            6                              6
  1                           21                             19
                                vv
clus                             M0 M1 MX
  DEL PEAK 22(18Q12.1) MUTATED   15  1 11
  DEL PEAK 22(18Q12.1) WILD-TYPE 12  1 12
D38V6, multiclass
    clus
vv   DEL PEAK 22(18Q12.1) MUTATED DEL PEAK 22(18Q12.1) WILD-TYPE
  M0                           15                             12
  M1                            1                              1
  MX                           11                             12
D38V7, binary
                                cls
clus                              0  1
  DEL PEAK 22(18Q12.1) MUTATED   14 13
  DEL PEAK 22(18Q12.1) WILD-TYPE 14 11
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(18Q12.1) MUTATED     14   13
  DEL PEAK 22(18Q12.1) WILD-TYPE   14   11
        clus
vv       DEL PEAK 22(18Q12.1) MUTATED DEL PEAK 22(18Q12.1) WILD-TYPE
  FEMALE                           14                             14
  MALE                             13                             11
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 22(18Q12.1) MUTATED                                    23
  DEL PEAK 22(18Q12.1) WILD-TYPE                                  23
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 22(18Q12.1) MUTATED                                       3
  DEL PEAK 22(18Q12.1) WILD-TYPE                                     1
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 22(18Q12.1) MUTATED                                                  0
  DEL PEAK 22(18Q12.1) WILD-TYPE                                                1
D38V8, multiclass
                                                  clus
vv                                                 DEL PEAK 22(18Q12.1) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        23
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 DEL PEAK 22(18Q12.1) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          23
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D38V9, continuous
D38V10, continuous
                                vv
clus                             R0 R1 RX
  DEL PEAK 22(18Q12.1) MUTATED   11 12  2
  DEL PEAK 22(18Q12.1) WILD-TYPE 17  8  0
D38V11, multiclass
    clus
vv   DEL PEAK 22(18Q12.1) MUTATED DEL PEAK 22(18Q12.1) WILD-TYPE
  R0                           11                             17
  R1                           12                              8
  RX                            2                              0
D38V12, continuous

Clustering(39) Variable = DEL PEAK 23(18Q21.2) MUTATION ANALYSIS
D39V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 23(18Q21.2) MUTATED   21 10
  DEL PEAK 23(18Q21.2) WILD-TYPE 11  7
  DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE 
                            31                             18 
  DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE 
                            10                              7 
$`DEL PEAK 23(18Q21.2) MUTATED`
TCGA-F2-6879 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N 
       10.98         5.03         5.19         0.03        12.89         7.63 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        7.86         0.92         0.66        12.03         0.26         0.62 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK 
        3.91         0.92         0.16         0.76         5.98         1.51 
TCGA-IB-7644 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
       11.41        21.86        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 
        3.58        15.78        19.66        16.04         3.85         0.56 
TCGA-IB-8127 
       17.13 

$`DEL PEAK 23(18Q21.2) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-FB-A4P5 TCGA-HZ-7922 TCGA-HZ-7923 
        9.96        11.84         7.07         0.13         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 
       12.13         0.99         0.69         0.49         0.10         2.96 
TCGA-HZ-A49H TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-7897 
        1.02        49.38         4.77        19.82        43.79        15.95 

  DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE 
                          0.03                           0.10 
  DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE 
                         27.98                          49.38 
  DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE 
                         5.190                          3.865 
[1] "0.0 - 28.0 (5.2)" "0.1 - 49.4 (3.9)"
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-8127 
  "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-8127 
  "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-8127 
  "DEL PEAK 23(18Q21.2) MUTATED" 
[1] "hr=" "1.3"
D39V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 23(18Q21.2) MUTATED          0        1         3        25
  DEL PEAK 23(18Q21.2) WILD-TYPE        2        1         3        13
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK 23(18Q21.2) MUTATED           2        2
  DEL PEAK 23(18Q21.2) WILD-TYPE         0        0
D39V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  DEL PEAK 23(18Q21.2) MUTATED       2    31
  DEL PEAK 23(18Q21.2) WILD-TYPE     3    16
D39V4, multiclass
       clus
vv      DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE
  T1+T2                            2                              3
  T3+T4                           31                             16
D39V5, binary
                                cls
clus                              0  1
  DEL PEAK 23(18Q21.2) MUTATED    6 27
  DEL PEAK 23(18Q21.2) WILD-TYPE  6 13
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(18Q21.2) MUTATED      6   27
  DEL PEAK 23(18Q21.2) WILD-TYPE    6   13
   clus
vv  DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE
  0                            6                              6
  1                           27                             13
                                vv
clus                             M0 M1 MX
  DEL PEAK 23(18Q21.2) MUTATED   19  2 12
  DEL PEAK 23(18Q21.2) WILD-TYPE  8  0 11
D39V6, multiclass
    clus
vv   DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE
  M0                           19                              8
  M1                            2                              0
  MX                           12                             11
D39V7, binary
                                cls
clus                              0  1
  DEL PEAK 23(18Q21.2) MUTATED   17 16
  DEL PEAK 23(18Q21.2) WILD-TYPE 11  8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(18Q21.2) MUTATED     17   16
  DEL PEAK 23(18Q21.2) WILD-TYPE   11    8
        clus
vv       DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE
  FEMALE                           17                             11
  MALE                             16                              8
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 23(18Q21.2) MUTATED                                    29
  DEL PEAK 23(18Q21.2) WILD-TYPE                                  17
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 23(18Q21.2) MUTATED                                       3
  DEL PEAK 23(18Q21.2) WILD-TYPE                                     1
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 23(18Q21.2) MUTATED                                                  0
  DEL PEAK 23(18Q21.2) WILD-TYPE                                                1
D39V8, multiclass
                                                  clus
vv                                                 DEL PEAK 23(18Q21.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        29
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 DEL PEAK 23(18Q21.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          17
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D39V9, continuous
D39V10, continuous
[1] "Remove cluster labels:"         "DEL PEAK 23(18Q21.2) WILD-TYPE"
clus
  DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE 
                             8                              2 
                  TCGA-H6-8124                   TCGA-IB-7644 
"DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) MUTATED" 
                  TCGA-IB-7649                   TCGA-IB-7885 
"DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) MUTATED" 
                  TCGA-IB-7886                   TCGA-IB-7891 
"DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) MUTATED" 
                  TCGA-IB-8126                   TCGA-IB-8127 
"DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) MUTATED" 
                                vv
clus                             R0 R1 RX
  DEL PEAK 23(18Q21.2) MUTATED   12 17  2
  DEL PEAK 23(18Q21.2) WILD-TYPE 16  3  0
D39V11, multiclass
    clus
vv   DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE
  R0                           12                             16
  R1                           17                              3
  RX                            2                              0
D39V12, continuous

Clustering(40) Variable = DEL PEAK 24(19Q13.33) MUTATION ANALYSIS
D40V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 24(19Q13.33) MUTATED    3  1
  DEL PEAK 24(19Q13.33) WILD-TYPE 29 16
  DEL PEAK 24(19Q13.33) MUTATED DEL PEAK 24(19Q13.33) WILD-TYPE 
                              4                              45 
  DEL PEAK 24(19Q13.33) MUTATED DEL PEAK 24(19Q13.33) WILD-TYPE 
                              1                              16 
$`DEL PEAK 24(19Q13.33) MUTATED`
TCGA-HZ-A4BH TCGA-IB-7646 TCGA-IB-7652 TCGA-IB-7885 
        5.98         4.77        15.65        27.98 

$`DEL PEAK 24(19Q13.33) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
        0.13         0.03        12.89         7.63         7.86         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        12.03         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.99         0.69         3.91         0.92         0.49 
TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK 
        0.10         0.16         2.96         0.76         1.02         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7886 
       11.41        49.38        21.86        15.35        19.82         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.58        43.79        15.78        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       15.95         0.56        17.13 

  DEL PEAK 24(19Q13.33) MUTATED DEL PEAK 24(19Q13.33) WILD-TYPE 
                           4.77                            0.03 
  DEL PEAK 24(19Q13.33) MUTATED DEL PEAK 24(19Q13.33) WILD-TYPE 
                          27.98                           49.38 
  DEL PEAK 24(19Q13.33) MUTATED DEL PEAK 24(19Q13.33) WILD-TYPE 
                         10.815                           4.040 
[1] "4.8 - 28.0 (10.8)" "0.0 - 49.4 (4.0)" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"DEL PEAK 24(19Q13.33) WILD-TYPE"   "DEL PEAK 24(19Q13.33) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"DEL PEAK 24(19Q13.33) WILD-TYPE"   "DEL PEAK 24(19Q13.33) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"DEL PEAK 24(19Q13.33) WILD-TYPE"   "DEL PEAK 24(19Q13.33) MUTATED" 
                     TCGA-IB-7885                      TCGA-IB-7886 
  "DEL PEAK 24(19Q13.33) MUTATED" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-IB-8127 
"DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"DEL PEAK 24(19Q13.33) WILD-TYPE"   "DEL PEAK 24(19Q13.33) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"DEL PEAK 24(19Q13.33) WILD-TYPE"   "DEL PEAK 24(19Q13.33) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"DEL PEAK 24(19Q13.33) WILD-TYPE"   "DEL PEAK 24(19Q13.33) MUTATED" 
                     TCGA-IB-7885                      TCGA-IB-7886 
  "DEL PEAK 24(19Q13.33) MUTATED" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-IB-8127 
"DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"DEL PEAK 24(19Q13.33) WILD-TYPE"   "DEL PEAK 24(19Q13.33) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"DEL PEAK 24(19Q13.33) WILD-TYPE"   "DEL PEAK 24(19Q13.33) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"DEL PEAK 24(19Q13.33) WILD-TYPE"   "DEL PEAK 24(19Q13.33) MUTATED" 
                     TCGA-IB-7885                      TCGA-IB-7886 
  "DEL PEAK 24(19Q13.33) MUTATED" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-IB-8127 
"DEL PEAK 24(19Q13.33) WILD-TYPE" 
[1] "hr=" "2.3"
D40V2, continuous
                                 vv
clus                              STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 24(19Q13.33) MUTATED          0        0         0         5
  DEL PEAK 24(19Q13.33) WILD-TYPE        2        2         6        33
                                 vv
clus                              STAGE III STAGE IV
  DEL PEAK 24(19Q13.33) MUTATED           0        0
  DEL PEAK 24(19Q13.33) WILD-TYPE         2        2
D40V3, multiclass
                                 vv
clus                              T1+T2 T3+T4
  DEL PEAK 24(19Q13.33) MUTATED       0     5
  DEL PEAK 24(19Q13.33) WILD-TYPE     5    42
D40V4, multiclass
       clus
vv      DEL PEAK 24(19Q13.33) MUTATED DEL PEAK 24(19Q13.33) WILD-TYPE
  T1+T2                             0                               5
  T3+T4                             5                              42
D40V5, binary
                                 cls
clus                               0  1
  DEL PEAK 24(19Q13.33) MUTATED    0  5
  DEL PEAK 24(19Q13.33) WILD-TYPE 12 35
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 24(19Q13.33) MUTATED      0    5
  DEL PEAK 24(19Q13.33) WILD-TYPE   12   35
   clus
vv  DEL PEAK 24(19Q13.33) MUTATED DEL PEAK 24(19Q13.33) WILD-TYPE
  0                             0                              12
  1                             5                              35
                                 vv
clus                              M0 M1 MX
  DEL PEAK 24(19Q13.33) MUTATED    3  0  2
  DEL PEAK 24(19Q13.33) WILD-TYPE 24  2 21
D40V6, multiclass
    clus
vv   DEL PEAK 24(19Q13.33) MUTATED DEL PEAK 24(19Q13.33) WILD-TYPE
  M0                             3                              24
  M1                             0                               2
  MX                             2                              21
D40V7, binary
                                 cls
clus                               0  1
  DEL PEAK 24(19Q13.33) MUTATED    2  3
  DEL PEAK 24(19Q13.33) WILD-TYPE 26 21
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 24(19Q13.33) MUTATED      2    3
  DEL PEAK 24(19Q13.33) WILD-TYPE   26   21
        clus
vv       DEL PEAK 24(19Q13.33) MUTATED DEL PEAK 24(19Q13.33) WILD-TYPE
  FEMALE                             2                              26
  MALE                               3                              21
                                 vv
clus                              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 24(19Q13.33) MUTATED                                     5
  DEL PEAK 24(19Q13.33) WILD-TYPE                                  41
                                 vv
clus                              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 24(19Q13.33) MUTATED                                       0
  DEL PEAK 24(19Q13.33) WILD-TYPE                                     4
                                 vv
clus                              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 24(19Q13.33) MUTATED                                                  0
  DEL PEAK 24(19Q13.33) WILD-TYPE                                                1
D40V8, multiclass
                                                  clus
vv                                                 DEL PEAK 24(19Q13.33) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             0
                                                  clus
vv                                                 DEL PEAK 24(19Q13.33) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                           41
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                               1
D40V9, continuous
[1] "Remove cluster labels:"        "DEL PEAK 24(19Q13.33) MUTATED"
clus
  DEL PEAK 24(19Q13.33) MUTATED DEL PEAK 24(19Q13.33) WILD-TYPE 
                              1                              12 
                     TCGA-F2-6880                      TCGA-FB-A4P5 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-IB-7644                      TCGA-IB-7649 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7886 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-IB-7887                      TCGA-IB-7891 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-IB-8126                      TCGA-IB-8127 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
D40V10, continuous
[1] "Remove cluster labels:"        "DEL PEAK 24(19Q13.33) MUTATED"
clus
  DEL PEAK 24(19Q13.33) MUTATED DEL PEAK 24(19Q13.33) WILD-TYPE 
                              1                               9 
                     TCGA-FB-A4P5                      TCGA-H6-8124 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-IB-7644                      TCGA-IB-7649 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7886 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-8126 
"DEL PEAK 24(19Q13.33) WILD-TYPE" "DEL PEAK 24(19Q13.33) WILD-TYPE" 
                     TCGA-IB-8127 
"DEL PEAK 24(19Q13.33) WILD-TYPE" 
                                 vv
clus                              R0 R1 RX
  DEL PEAK 24(19Q13.33) MUTATED    1  4  0
  DEL PEAK 24(19Q13.33) WILD-TYPE 27 16  2
D40V11, multiclass
    clus
vv   DEL PEAK 24(19Q13.33) MUTATED DEL PEAK 24(19Q13.33) WILD-TYPE
  R0                             1                              27
  R1                             4                              16
  RX                             0                               2
D40V12, continuous

Clustering(41) Variable = DEL PEAK 25(21Q22.11) MUTATION ANALYSIS
D41V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 25(21Q22.11) MUTATED    9  6
  DEL PEAK 25(21Q22.11) WILD-TYPE 23 11
  DEL PEAK 25(21Q22.11) MUTATED DEL PEAK 25(21Q22.11) WILD-TYPE 
                             15                              34 
  DEL PEAK 25(21Q22.11) MUTATED DEL PEAK 25(21Q22.11) WILD-TYPE 
                              6                              11 
$`DEL PEAK 25(21Q22.11) MUTATED`
TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-8005 
        0.03        12.89         0.92         0.66         0.13         3.91 
TCGA-HZ-8636 TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7651 
        0.16         5.98        11.41         4.77        15.35        19.82 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       27.98         4.04         3.58 

$`DEL PEAK 25(21Q22.11) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.13         7.63         7.86         0.26        12.13        12.03 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.99         0.69         0.92         0.49 
TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7645 
        0.10         2.96         0.76         1.02         1.51        49.38 
TCGA-IB-7647 TCGA-IB-7652 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       21.86        15.65        43.79        15.78        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
        3.85        15.95         0.56        17.13 

  DEL PEAK 25(21Q22.11) MUTATED DEL PEAK 25(21Q22.11) WILD-TYPE 
                           0.03                            0.10 
  DEL PEAK 25(21Q22.11) MUTATED DEL PEAK 25(21Q22.11) WILD-TYPE 
                          27.98                           49.38 
  DEL PEAK 25(21Q22.11) MUTATED DEL PEAK 25(21Q22.11) WILD-TYPE 
                           4.04                            6.13 
[1] "0.0 - 28.0 (4.0)" "0.1 - 49.4 (6.1)"
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 25(21Q22.11) WILD-TYPE"   "DEL PEAK 25(21Q22.11) MUTATED" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
  "DEL PEAK 25(21Q22.11) MUTATED" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"DEL PEAK 25(21Q22.11) WILD-TYPE"   "DEL PEAK 25(21Q22.11) MUTATED" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
  "DEL PEAK 25(21Q22.11) MUTATED"   "DEL PEAK 25(21Q22.11) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 25(21Q22.11) WILD-TYPE"   "DEL PEAK 25(21Q22.11) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 25(21Q22.11) WILD-TYPE"   "DEL PEAK 25(21Q22.11) MUTATED" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"DEL PEAK 25(21Q22.11) WILD-TYPE"   "DEL PEAK 25(21Q22.11) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"DEL PEAK 25(21Q22.11) WILD-TYPE"   "DEL PEAK 25(21Q22.11) MUTATED" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"DEL PEAK 25(21Q22.11) WILD-TYPE"   "DEL PEAK 25(21Q22.11) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"DEL PEAK 25(21Q22.11) WILD-TYPE"   "DEL PEAK 25(21Q22.11) MUTATED" 
                     TCGA-IB-7651                      TCGA-IB-7652 
  "DEL PEAK 25(21Q22.11) MUTATED" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
  "DEL PEAK 25(21Q22.11) MUTATED"   "DEL PEAK 25(21Q22.11) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
  "DEL PEAK 25(21Q22.11) MUTATED" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-IB-8127 
"DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 25(21Q22.11) WILD-TYPE"   "DEL PEAK 25(21Q22.11) MUTATED" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
  "DEL PEAK 25(21Q22.11) MUTATED" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"DEL PEAK 25(21Q22.11) WILD-TYPE"   "DEL PEAK 25(21Q22.11) MUTATED" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
  "DEL PEAK 25(21Q22.11) MUTATED"   "DEL PEAK 25(21Q22.11) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 25(21Q22.11) WILD-TYPE"   "DEL PEAK 25(21Q22.11) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 25(21Q22.11) WILD-TYPE"   "DEL PEAK 25(21Q22.11) MUTATED" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"DEL PEAK 25(21Q22.11) WILD-TYPE"   "DEL PEAK 25(21Q22.11) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"DEL PEAK 25(21Q22.11) WILD-TYPE"   "DEL PEAK 25(21Q22.11) MUTATED" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"DEL PEAK 25(21Q22.11) WILD-TYPE"   "DEL PEAK 25(21Q22.11) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"DEL PEAK 25(21Q22.11) WILD-TYPE"   "DEL PEAK 25(21Q22.11) MUTATED" 
                     TCGA-IB-7651                      TCGA-IB-7652 
  "DEL PEAK 25(21Q22.11) MUTATED" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
  "DEL PEAK 25(21Q22.11) MUTATED"   "DEL PEAK 25(21Q22.11) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
  "DEL PEAK 25(21Q22.11) MUTATED" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-IB-8127 
"DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 25(21Q22.11) WILD-TYPE"   "DEL PEAK 25(21Q22.11) MUTATED" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
  "DEL PEAK 25(21Q22.11) MUTATED" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"DEL PEAK 25(21Q22.11) WILD-TYPE"   "DEL PEAK 25(21Q22.11) MUTATED" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
  "DEL PEAK 25(21Q22.11) MUTATED"   "DEL PEAK 25(21Q22.11) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 25(21Q22.11) WILD-TYPE"   "DEL PEAK 25(21Q22.11) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 25(21Q22.11) WILD-TYPE"   "DEL PEAK 25(21Q22.11) MUTATED" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"DEL PEAK 25(21Q22.11) WILD-TYPE"   "DEL PEAK 25(21Q22.11) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"DEL PEAK 25(21Q22.11) WILD-TYPE"   "DEL PEAK 25(21Q22.11) MUTATED" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"DEL PEAK 25(21Q22.11) WILD-TYPE"   "DEL PEAK 25(21Q22.11) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"DEL PEAK 25(21Q22.11) WILD-TYPE"   "DEL PEAK 25(21Q22.11) MUTATED" 
                     TCGA-IB-7651                      TCGA-IB-7652 
  "DEL PEAK 25(21Q22.11) MUTATED" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
  "DEL PEAK 25(21Q22.11) MUTATED"   "DEL PEAK 25(21Q22.11) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
  "DEL PEAK 25(21Q22.11) MUTATED" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"DEL PEAK 25(21Q22.11) WILD-TYPE" "DEL PEAK 25(21Q22.11) WILD-TYPE" 
                     TCGA-IB-8127 
"DEL PEAK 25(21Q22.11) WILD-TYPE" 
[1] "hr=" "1.7"
D41V2, continuous
                                 vv
clus                              STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 25(21Q22.11) MUTATED          0        0         0        14
  DEL PEAK 25(21Q22.11) WILD-TYPE        2        2         6        24
                                 vv
clus                              STAGE III STAGE IV
  DEL PEAK 25(21Q22.11) MUTATED           0        2
  DEL PEAK 25(21Q22.11) WILD-TYPE         2        0
D41V3, multiclass
                                 vv
clus                              T1+T2 T3+T4
  DEL PEAK 25(21Q22.11) MUTATED       0    16
  DEL PEAK 25(21Q22.11) WILD-TYPE     5    31
D41V4, multiclass
       clus
vv      DEL PEAK 25(21Q22.11) MUTATED DEL PEAK 25(21Q22.11) WILD-TYPE
  T1+T2                             0                               5
  T3+T4                            16                              31
D41V5, binary
                                 cls
clus                               0  1
  DEL PEAK 25(21Q22.11) MUTATED    1 15
  DEL PEAK 25(21Q22.11) WILD-TYPE 11 25
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 25(21Q22.11) MUTATED      1   15
  DEL PEAK 25(21Q22.11) WILD-TYPE   11   25
   clus
vv  DEL PEAK 25(21Q22.11) MUTATED DEL PEAK 25(21Q22.11) WILD-TYPE
  0                             1                              11
  1                            15                              25
                                 vv
clus                              M0 M1 MX
  DEL PEAK 25(21Q22.11) MUTATED   10  2  4
  DEL PEAK 25(21Q22.11) WILD-TYPE 17  0 19
D41V6, multiclass
    clus
vv   DEL PEAK 25(21Q22.11) MUTATED DEL PEAK 25(21Q22.11) WILD-TYPE
  M0                            10                              17
  M1                             2                               0
  MX                             4                              19
D41V7, binary
                                 cls
clus                               0  1
  DEL PEAK 25(21Q22.11) MUTATED   11  5
  DEL PEAK 25(21Q22.11) WILD-TYPE 17 19
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 25(21Q22.11) MUTATED     11    5
  DEL PEAK 25(21Q22.11) WILD-TYPE   17   19
        clus
vv       DEL PEAK 25(21Q22.11) MUTATED DEL PEAK 25(21Q22.11) WILD-TYPE
  FEMALE                            11                              17
  MALE                               5                              19
                                 vv
clus                              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 25(21Q22.11) MUTATED                                    16
  DEL PEAK 25(21Q22.11) WILD-TYPE                                  30
                                 vv
clus                              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 25(21Q22.11) MUTATED                                       0
  DEL PEAK 25(21Q22.11) WILD-TYPE                                     4
                                 vv
clus                              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 25(21Q22.11) MUTATED                                                  0
  DEL PEAK 25(21Q22.11) WILD-TYPE                                                1
D41V8, multiclass
                                                  clus
vv                                                 DEL PEAK 25(21Q22.11) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         16
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             0
                                                  clus
vv                                                 DEL PEAK 25(21Q22.11) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                           30
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                               1
D41V9, continuous
D41V10, continuous
                                 vv
clus                              R0 R1 RX
  DEL PEAK 25(21Q22.11) MUTATED    6  9  0
  DEL PEAK 25(21Q22.11) WILD-TYPE 22 11  2
D41V11, multiclass
    clus
vv   DEL PEAK 25(21Q22.11) MUTATED DEL PEAK 25(21Q22.11) WILD-TYPE
  R0                             6                              22
  R1                             9                              11
  RX                             0                               2
D41V12, continuous

Clustering(42) Variable = DEL PEAK 26(21Q22.11) MUTATION ANALYSIS
D42V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 26(21Q22.11) MUTATED    9  6
  DEL PEAK 26(21Q22.11) WILD-TYPE 23 11
  DEL PEAK 26(21Q22.11) MUTATED DEL PEAK 26(21Q22.11) WILD-TYPE 
                             15                              34 
  DEL PEAK 26(21Q22.11) MUTATED DEL PEAK 26(21Q22.11) WILD-TYPE 
                              6                              11 
$`DEL PEAK 26(21Q22.11) MUTATED`
TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-8005 
        0.03        12.89         0.92         0.66         0.13         3.91 
TCGA-HZ-8636 TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7651 
        0.16         5.98        11.41         4.77        15.35        19.82 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       27.98         4.04         3.58 

$`DEL PEAK 26(21Q22.11) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.13         7.63         7.86         0.26        12.13        12.03 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.99         0.69         0.92         0.49 
TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7645 
        0.10         2.96         0.76         1.02         1.51        49.38 
TCGA-IB-7647 TCGA-IB-7652 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       21.86        15.65        43.79        15.78        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
        3.85        15.95         0.56        17.13 

  DEL PEAK 26(21Q22.11) MUTATED DEL PEAK 26(21Q22.11) WILD-TYPE 
                           0.03                            0.10 
  DEL PEAK 26(21Q22.11) MUTATED DEL PEAK 26(21Q22.11) WILD-TYPE 
                          27.98                           49.38 
  DEL PEAK 26(21Q22.11) MUTATED DEL PEAK 26(21Q22.11) WILD-TYPE 
                           4.04                            6.13 
[1] "0.0 - 28.0 (4.0)" "0.1 - 49.4 (6.1)"
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
  "DEL PEAK 26(21Q22.11) MUTATED" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
  "DEL PEAK 26(21Q22.11) MUTATED"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-IB-7651                      TCGA-IB-7652 
  "DEL PEAK 26(21Q22.11) MUTATED" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
  "DEL PEAK 26(21Q22.11) MUTATED"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
  "DEL PEAK 26(21Q22.11) MUTATED" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-8127 
"DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
  "DEL PEAK 26(21Q22.11) MUTATED" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
  "DEL PEAK 26(21Q22.11) MUTATED"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-IB-7651                      TCGA-IB-7652 
  "DEL PEAK 26(21Q22.11) MUTATED" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
  "DEL PEAK 26(21Q22.11) MUTATED"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
  "DEL PEAK 26(21Q22.11) MUTATED" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-8127 
"DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
  "DEL PEAK 26(21Q22.11) MUTATED" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
  "DEL PEAK 26(21Q22.11) MUTATED"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-IB-7651                      TCGA-IB-7652 
  "DEL PEAK 26(21Q22.11) MUTATED" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
  "DEL PEAK 26(21Q22.11) MUTATED"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
  "DEL PEAK 26(21Q22.11) MUTATED" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-8127 
"DEL PEAK 26(21Q22.11) WILD-TYPE" 
[1] "hr=" "1.7"
D42V2, continuous
                                 vv
clus                              STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 26(21Q22.11) MUTATED          0        0         0        14
  DEL PEAK 26(21Q22.11) WILD-TYPE        2        2         6        24
                                 vv
clus                              STAGE III STAGE IV
  DEL PEAK 26(21Q22.11) MUTATED           0        2
  DEL PEAK 26(21Q22.11) WILD-TYPE         2        0
D42V3, multiclass
                                 vv
clus                              T1+T2 T3+T4
  DEL PEAK 26(21Q22.11) MUTATED       0    16
  DEL PEAK 26(21Q22.11) WILD-TYPE     5    31
D42V4, multiclass
       clus
vv      DEL PEAK 26(21Q22.11) MUTATED DEL PEAK 26(21Q22.11) WILD-TYPE
  T1+T2                             0                               5
  T3+T4                            16                              31
D42V5, binary
                                 cls
clus                               0  1
  DEL PEAK 26(21Q22.11) MUTATED    1 15
  DEL PEAK 26(21Q22.11) WILD-TYPE 11 25
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 26(21Q22.11) MUTATED      1   15
  DEL PEAK 26(21Q22.11) WILD-TYPE   11   25
   clus
vv  DEL PEAK 26(21Q22.11) MUTATED DEL PEAK 26(21Q22.11) WILD-TYPE
  0                             1                              11
  1                            15                              25
                                 vv
clus                              M0 M1 MX
  DEL PEAK 26(21Q22.11) MUTATED   10  2  4
  DEL PEAK 26(21Q22.11) WILD-TYPE 17  0 19
D42V6, multiclass
    clus
vv   DEL PEAK 26(21Q22.11) MUTATED DEL PEAK 26(21Q22.11) WILD-TYPE
  M0                            10                              17
  M1                             2                               0
  MX                             4                              19
D42V7, binary
                                 cls
clus                               0  1
  DEL PEAK 26(21Q22.11) MUTATED   11  5
  DEL PEAK 26(21Q22.11) WILD-TYPE 17 19
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 26(21Q22.11) MUTATED     11    5
  DEL PEAK 26(21Q22.11) WILD-TYPE   17   19
        clus
vv       DEL PEAK 26(21Q22.11) MUTATED DEL PEAK 26(21Q22.11) WILD-TYPE
  FEMALE                            11                              17
  MALE                               5                              19
                                 vv
clus                              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 26(21Q22.11) MUTATED                                    16
  DEL PEAK 26(21Q22.11) WILD-TYPE                                  30
                                 vv
clus                              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 26(21Q22.11) MUTATED                                       0
  DEL PEAK 26(21Q22.11) WILD-TYPE                                     4
                                 vv
clus                              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 26(21Q22.11) MUTATED                                                  0
  DEL PEAK 26(21Q22.11) WILD-TYPE                                                1
D42V8, multiclass
                                                  clus
vv                                                 DEL PEAK 26(21Q22.11) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         16
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             0
                                                  clus
vv                                                 DEL PEAK 26(21Q22.11) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                           30
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                               1
D42V9, continuous
D42V10, continuous
                                 vv
clus                              R0 R1 RX
  DEL PEAK 26(21Q22.11) MUTATED    6  9  0
  DEL PEAK 26(21Q22.11) WILD-TYPE 22 11  2
D42V11, multiclass
    clus
vv   DEL PEAK 26(21Q22.11) MUTATED DEL PEAK 26(21Q22.11) WILD-TYPE
  R0                             6                              22
  R1                             9                              11
  RX                             0                               2
D42V12, continuous

Clustering(43) Variable = DEL PEAK 27(22Q13.31) MUTATION ANALYSIS
D43V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 27(22Q13.31) MUTATED    7  5
  DEL PEAK 27(22Q13.31) WILD-TYPE 25 12
  DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE 
                             12                              37 
  DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE 
                              5                              12 
$`DEL PEAK 27(22Q13.31) MUTATED`
TCGA-F2-6879 TCGA-F2-A44H TCGA-HZ-7919 TCGA-HZ-8005 TCGA-HZ-8636 TCGA-HZ-A4BH 
       10.98         5.19         0.66         3.91         0.16         5.98 
TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7886 TCGA-IB-7891 TCGA-IB-8127 
       11.41         4.77        15.35         4.04        16.04        17.13 

$`DEL PEAK 27(22Q13.31) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A545 
        9.96        11.84         7.07         5.03         0.13         0.03 
TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 
       12.89         7.63         7.86         0.92         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        12.03         0.26         0.62         0.99         0.69 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.92         0.49         0.10         2.96         0.76         1.02 
TCGA-HZ-A4BK TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
        1.51        49.38        21.86        19.82        15.65        27.98 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-7897 
        3.58        43.79        15.78        19.66         3.85        15.95 
TCGA-IB-8126 
        0.56 

  DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE 
                           0.16                            0.03 
  DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE 
                          17.13                           49.38 
  DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE 
                          5.585                           3.850 
[1] "0.2 - 17.1 (5.6)" "0.0 - 49.4 (3.9)"
                     TCGA-F2-6879                      TCGA-F2-6880 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-8127 
  "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-F2-6879                      TCGA-F2-6880 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-8127 
  "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-F2-6879                      TCGA-F2-6880 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-8127 
  "DEL PEAK 27(22Q13.31) MUTATED" 
[1] "hr=" "1.9"
D43V2, continuous
                                 vv
clus                              STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 27(22Q13.31) MUTATED          0        0         1         9
  DEL PEAK 27(22Q13.31) WILD-TYPE        2        2         5        29
                                 vv
clus                              STAGE III STAGE IV
  DEL PEAK 27(22Q13.31) MUTATED           0        2
  DEL PEAK 27(22Q13.31) WILD-TYPE         2        0
D43V3, multiclass
                                 vv
clus                              T1+T2 T3+T4
  DEL PEAK 27(22Q13.31) MUTATED       0    12
  DEL PEAK 27(22Q13.31) WILD-TYPE     5    35
D43V4, multiclass
       clus
vv      DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE
  T1+T2                             0                               5
  T3+T4                            12                              35
D43V5, binary
                                 cls
clus                               0  1
  DEL PEAK 27(22Q13.31) MUTATED    2 10
  DEL PEAK 27(22Q13.31) WILD-TYPE 10 30
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 27(22Q13.31) MUTATED      2   10
  DEL PEAK 27(22Q13.31) WILD-TYPE   10   30
   clus
vv  DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE
  0                             2                              10
  1                            10                              30
                                 vv
clus                              M0 M1 MX
  DEL PEAK 27(22Q13.31) MUTATED    8  2  2
  DEL PEAK 27(22Q13.31) WILD-TYPE 19  0 21
D43V6, multiclass
    clus
vv   DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE
  M0                             8                              19
  M1                             2                               0
  MX                             2                              21
D43V7, binary
                                 cls
clus                               0  1
  DEL PEAK 27(22Q13.31) MUTATED    4  8
  DEL PEAK 27(22Q13.31) WILD-TYPE 24 16
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 27(22Q13.31) MUTATED      4    8
  DEL PEAK 27(22Q13.31) WILD-TYPE   24   16
        clus
vv       DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE
  FEMALE                             4                              24
  MALE                               8                              16
                                 vv
clus                              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 27(22Q13.31) MUTATED                                    11
  DEL PEAK 27(22Q13.31) WILD-TYPE                                  35
                                 vv
clus                              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 27(22Q13.31) MUTATED                                       0
  DEL PEAK 27(22Q13.31) WILD-TYPE                                     4
                                 vv
clus                              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 27(22Q13.31) MUTATED                                                  0
  DEL PEAK 27(22Q13.31) WILD-TYPE                                                1
D43V8, multiclass
                                                  clus
vv                                                 DEL PEAK 27(22Q13.31) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         11
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             0
                                                  clus
vv                                                 DEL PEAK 27(22Q13.31) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                           35
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                               1
D43V9, continuous
D43V10, continuous
                                 vv
clus                              R0 R1 RX
  DEL PEAK 27(22Q13.31) MUTATED    3  9  0
  DEL PEAK 27(22Q13.31) WILD-TYPE 25 11  2
D43V11, multiclass
    clus
vv   DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE
  R0                             3                              25
  R1                             9                              11
  RX                             0                               2
D43V12, continuous

Clustering(44) Variable = DEL PEAK 28(XQ21.1) MUTATION ANALYSIS
D44V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 28(XQ21.1) MUTATED    4  2
  DEL PEAK 28(XQ21.1) WILD-TYPE 28 15
  DEL PEAK 28(XQ21.1) MUTATED DEL PEAK 28(XQ21.1) WILD-TYPE 
                            6                            43 
  DEL PEAK 28(XQ21.1) MUTATED DEL PEAK 28(XQ21.1) WILD-TYPE 
                            2                            15 
$`DEL PEAK 28(XQ21.1) MUTATED`
TCGA-F2-6879 TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-IB-7652 TCGA-IB-7886 
       10.98        12.89         7.86         0.92        15.65         4.04 

$`DEL PEAK 28(XQ21.1) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.96        11.84         7.07         5.03         5.19         0.13 
TCGA-FB-A545 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        0.03         7.63         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       12.03         0.26         0.62         0.99         0.69         3.91 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.92         0.49         0.10         0.16         2.96         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        1.02         5.98         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 
       21.86        15.35        19.82        27.98         3.58        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       15.78        19.66        16.04         3.85        15.95         0.56 
TCGA-IB-8127 
       17.13 

  DEL PEAK 28(XQ21.1) MUTATED DEL PEAK 28(XQ21.1) WILD-TYPE 
                         0.92                          0.03 
  DEL PEAK 28(XQ21.1) MUTATED DEL PEAK 28(XQ21.1) WILD-TYPE 
                        15.65                         49.38 
  DEL PEAK 28(XQ21.1) MUTATED DEL PEAK 28(XQ21.1) WILD-TYPE 
                         9.42                          4.77 
[1] "0.9 - 15.7 (9.4)" "0.0 - 49.4 (4.8)"
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK 28(XQ21.1) MUTATED" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK 28(XQ21.1) MUTATED" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK 28(XQ21.1) MUTATED"   "DEL PEAK 28(XQ21.1) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK 28(XQ21.1) WILD-TYPE"   "DEL PEAK 28(XQ21.1) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK 28(XQ21.1) WILD-TYPE"   "DEL PEAK 28(XQ21.1) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-IB-8127 
"DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK 28(XQ21.1) MUTATED" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK 28(XQ21.1) MUTATED" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK 28(XQ21.1) MUTATED"   "DEL PEAK 28(XQ21.1) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK 28(XQ21.1) WILD-TYPE"   "DEL PEAK 28(XQ21.1) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK 28(XQ21.1) WILD-TYPE"   "DEL PEAK 28(XQ21.1) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-IB-8127 
"DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK 28(XQ21.1) MUTATED" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK 28(XQ21.1) MUTATED" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK 28(XQ21.1) MUTATED"   "DEL PEAK 28(XQ21.1) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK 28(XQ21.1) WILD-TYPE"   "DEL PEAK 28(XQ21.1) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK 28(XQ21.1) WILD-TYPE"   "DEL PEAK 28(XQ21.1) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-IB-8127 
"DEL PEAK 28(XQ21.1) WILD-TYPE" 
[1] "hr=" "1.3"
D44V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK 28(XQ21.1) MUTATED          0        0         0         6         0
  DEL PEAK 28(XQ21.1) WILD-TYPE        2        2         6        32         2
                               vv
clus                            STAGE IV
  DEL PEAK 28(XQ21.1) MUTATED          0
  DEL PEAK 28(XQ21.1) WILD-TYPE        2
D44V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  DEL PEAK 28(XQ21.1) MUTATED       0     6
  DEL PEAK 28(XQ21.1) WILD-TYPE     5    41
D44V4, multiclass
       clus
vv      DEL PEAK 28(XQ21.1) MUTATED DEL PEAK 28(XQ21.1) WILD-TYPE
  T1+T2                           0                             5
  T3+T4                           6                            41
D44V5, binary
                               cls
clus                             0  1
  DEL PEAK 28(XQ21.1) MUTATED    0  6
  DEL PEAK 28(XQ21.1) WILD-TYPE 12 34
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 28(XQ21.1) MUTATED      0    6
  DEL PEAK 28(XQ21.1) WILD-TYPE   12   34
   clus
vv  DEL PEAK 28(XQ21.1) MUTATED DEL PEAK 28(XQ21.1) WILD-TYPE
  0                           0                            12
  1                           6                            34
                               vv
clus                            M0 M1 MX
  DEL PEAK 28(XQ21.1) MUTATED    5  0  1
  DEL PEAK 28(XQ21.1) WILD-TYPE 22  2 22
D44V6, multiclass
    clus
vv   DEL PEAK 28(XQ21.1) MUTATED DEL PEAK 28(XQ21.1) WILD-TYPE
  M0                           5                            22
  M1                           0                             2
  MX                           1                            22
D44V7, binary
                               cls
clus                             0  1
  DEL PEAK 28(XQ21.1) MUTATED    2  4
  DEL PEAK 28(XQ21.1) WILD-TYPE 26 20
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 28(XQ21.1) MUTATED      2    4
  DEL PEAK 28(XQ21.1) WILD-TYPE   26   20
        clus
vv       DEL PEAK 28(XQ21.1) MUTATED DEL PEAK 28(XQ21.1) WILD-TYPE
  FEMALE                           2                            26
  MALE                             4                            20
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 28(XQ21.1) MUTATED                                     4
  DEL PEAK 28(XQ21.1) WILD-TYPE                                  42
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 28(XQ21.1) MUTATED                                       1
  DEL PEAK 28(XQ21.1) WILD-TYPE                                     3
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 28(XQ21.1) MUTATED                                                  0
  DEL PEAK 28(XQ21.1) WILD-TYPE                                                1
D44V8, multiclass
                                                  clus
vv                                                 DEL PEAK 28(XQ21.1) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 DEL PEAK 28(XQ21.1) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         42
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D44V9, continuous
[1] "Remove cluster labels:"      "DEL PEAK 28(XQ21.1) MUTATED"
clus
  DEL PEAK 28(XQ21.1) MUTATED DEL PEAK 28(XQ21.1) WILD-TYPE 
                            2                            11 
                   TCGA-F2-6880                    TCGA-FB-A4P5 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-H6-A45N                    TCGA-IB-7644 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7887 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-8126 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-IB-8127 
"DEL PEAK 28(XQ21.1) WILD-TYPE" 
D44V10, continuous
[1] "Remove cluster labels:"      "DEL PEAK 28(XQ21.1) MUTATED"
clus
  DEL PEAK 28(XQ21.1) MUTATED DEL PEAK 28(XQ21.1) WILD-TYPE 
                            2                             8 
                   TCGA-FB-A4P5                    TCGA-IB-7644 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7891 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK 28(XQ21.1) WILD-TYPE" "DEL PEAK 28(XQ21.1) WILD-TYPE" 
                               vv
clus                            R0 R1 RX
  DEL PEAK 28(XQ21.1) MUTATED    3  2  1
  DEL PEAK 28(XQ21.1) WILD-TYPE 25 18  1
D44V11, multiclass
    clus
vv   DEL PEAK 28(XQ21.1) MUTATED DEL PEAK 28(XQ21.1) WILD-TYPE
  R0                           3                            25
  R1                           2                            18
  RX                           1                             1
D44V12, continuous
> q(save="no")
