		Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1p34.2)	0 (0%)	60	0.17342	1	0.72851	1	1	1	1	1	0.6555	1	1	1	0.8211	1	1	1
Amp Peak  2(1p12)	0 (0%)	54	0.044512	1	0.2509	1	0.95242	1	0.74621	1	0.88878	1	0.88519	1	0.47361	1	0.79125	1
Amp Peak  3(7q22.1)	0 (0%)	47	0.00076585	0.227	0.00010079	0.0328	0.26954	1	0.19099	1	0.12507	1	0.21834	1	0.10894	1	0.16233	1
Amp Peak  4(8q24.21)	0 (0%)	40	7.9149e-06	0.0027	0.0028714	0.778	0.00057869	0.176	0.0033286	0.895	0.028413	1	0.074383	1	0.0098308	1	0.035752	1
Amp Peak  5(9p13.3)	0 (0%)	58	0.077037	1	0.40443	1	0.1329	1	0.11879	1	0.30461	1	0.2261	1	0.16063	1	0.16625	1
Amp Peak  6(11p11.2)	0 (0%)	59	0.088799	1	0.059014	1	0.31426	1	0.19458	1	0.57097	1	0.19452	1	0.31157	1	0.20578	1
Amp Peak  7(12p13.33)	0 (0%)	55	2.522e-07	8.8e-05	0.0056511	1	0.058744	1	0.056163	1	0.043589	1	0.11348	1	0.015766	1	0.079146	1
Amp Peak  8(12p11.21)	0 (0%)	51	1.515e-05	0.00514	0.00069638	0.208	0.003279	0.885	0.082384	1	0.0042792	1	0.016959	1	0.0058408	1	0.013538	1
Amp Peak  9(12q15)	0 (0%)	57	0.0054877	1	0.031052	1	0.23711	1	0.035521	1	0.022523	1	0.01311	1	0.0046303	1	0.0087395	1
Amp Peak 10(17p11.2)	0 (0%)	62	0.63542	1	0.33756	1	0.88473	1	0.68302	1	0.57707	1	1	1	1	1	1	1
Amp Peak 11(17q21.33)	0 (0%)	58	0.0162	1	0.23854	1	0.60921	1	0.72031	1	1	1	0.75602	1	0.66973	1	0.76834	1
Amp Peak 12(18q11.2)	0 (0%)	46	0.00029253	0.0919	0.0036938	0.983	0.00036851	0.115	0.0080723	1	0.0058872	1	0.001089	0.313	0.00047846	0.147	0.00055624	0.17
Amp Peak 13(19q13.13)	0 (0%)	51	0.022874	1	0.074541	1	0.30943	1	0.044273	1	0.28605	1	0.21972	1	0.28588	1	0.43386	1
Amp Peak 14(20q13.2)	0 (0%)	48	2.8753e-06	0.000992	0.12143	1	0.053036	1	0.19099	1	0.14571	1	0.21834	1	0.036755	1	0.16233	1
Amp Peak 15(Xp22.11)	0 (0%)	61	0.24753	1	0.66713	1	0.88473	1	0.31161	1	1	1	0.81799	1	0.8211	1	0.81615	1
Amp Peak 16(Xq27.1)	0 (0%)	59	0.016524	1	0.873	1	0.39102	1	0.61513	1	0.46269	1	1	1	0.62433	1	0.7437	1
Del Peak  1(1p36.22)	0 (0%)	51	0.02066	1	0.0036089	0.964	0.075284	1	0.13403	1	0.033904	1	0.18563	1	0.068637	1	0.10652	1
Del Peak  2(1p36.11)	0 (0%)	47	0.00068007	0.205	0.00061917	0.187	0.0095313	1	0.25998	1	0.080149	1	0.076949	1	0.0091087	1	0.051788	1
Del Peak  3(1p21.2)	0 (0%)	54	0.00015231	0.0489	0.03819	1	0.15254	1	0.2524	1	0.066796	1	0.31634	1	0.013735	1	0.20866	1
Del Peak  4(5q14.2)	0 (0%)	53	0.00060074	0.182	0.32861	1	0.2338	1	0.24521	1	0.18382	1	0.50022	1	0.051746	1	0.46711	1
Del Peak  5(5q15)	0 (0%)	51	0.0006881	0.206	0.087654	1	0.54577	1	0.11317	1	0.12437	1	0.33103	1	0.029033	1	0.25601	1
Del Peak  6(6p25.2)	0 (0%)	39	4.1214e-05	0.0136	1.7624e-05	0.00596	0.00019273	0.0611	0.0072382	1	0.022568	1	0.0059696	1	0.0073686	1	0.017963	1
Del Peak  7(6p22.3)	0 (0%)	40	0.00085397	0.249	6.3229e-05	0.0207	0.00011913	0.0386	0.0022761	0.63	0.0063285	1	0.0025225	0.694	0.0049658	1	0.013422	1
Del Peak  8(6q22.33)	0 (0%)	34	0.00072787	0.216	3.7881e-05	0.0126	0.0021817	0.607	4.3884e-06	0.00151	0.0006926	0.207	0.00014803	0.0477	0.00016261	0.052	0.00046571	0.143
Del Peak  9(7q36.1)	0 (0%)	58	0.0018906	0.533	0.043891	1	0.1329	1	0.11879	1	0.30461	1	0.74022	1	0.46088	1	0.64301	1
Del Peak 10(8p21.3)	0 (0%)	46	2.5213e-05	0.00847	0.0002108	0.0666	8.9287e-05	0.0292	0.00053771	0.165	0.00078949	0.233	0.0020113	0.561	0.00016282	0.052	0.0011473	0.328
Del Peak 11(8q12.1)	0 (0%)	60	0.034937	1	0.076987	1	0.31426	1	0.25655	1	0.57097	1	0.19452	1	0.31157	1	0.20578	1
Del Peak 12(9p21.3)	0 (0%)	24	1.4333e-06	0.000496	9.1119e-08	3.2e-05	2.1551e-05	0.00726	4.0864e-06	0.00141	2.9466e-05	0.00987	4.0178e-05	0.0133	2.7831e-07	9.69e-05	4.8823e-06	0.00167
Del Peak 13(10q23.2)	0 (0%)	51	1.2013e-07	4.2e-05	0.037096	1	0.089185	1	0.020884	1	0.042065	1	0.014878	1	0.0011845	0.336	0.010745	1
Del Peak 14(11p15.4)	0 (0%)	53	0.030429	1	0.46739	1	0.76115	1	0.59153	1	0.52504	1	1	1	0.73166	1	1	1
Del Peak 15(12p12.3)	0 (0%)	54	0.00040825	0.127	0.00266	0.729	0.12456	1	0.13403	1	0.043589	1	0.0098869	1	0.018102	1	0.0073896	1
Del Peak 16(12q12)	0 (0%)	55	0.0001404	0.0453	3.9057e-05	0.013	0.024388	1	0.018512	1	0.10834	1	0.061447	1	0.01384	1	0.041297	1
Del Peak 17(12q24.31)	0 (0%)	49	0.00094835	0.275	9.0128e-05	0.0294	0.013836	1	0.00016911	0.0538	0.0010749	0.31	0.0054147	1	0.00045366	0.14	0.004017	1
Del Peak 18(15q15.1)	0 (0%)	51	1.2862e-06	0.000446	0.0035906	0.962	0.041446	1	0.0094249	1	0.019447	1	0.034649	1	0.00099418	0.287	0.015912	1
Del Peak 19(17p11.2)	0 (0%)	39	5.4266e-05	0.0179	1.1326e-08	3.99e-06	0.00080936	0.238	0.00082408	0.241	0.0023298	0.643	0.00033169	0.104	0.0002458	0.0774	0.0016492	0.467
Del Peak 20(17q22)	0 (0%)	47	9.6755e-06	0.00329	3.5445e-05	0.0118	0.04034	1	0.0027211	0.74	0.014201	1	0.029912	1	0.0082249	1	0.018297	1
Del Peak 21(18p11.32)	0 (0%)	44	0.124	1	1	1	0.54237	1	1	1	0.218	1	0.93509	1	0.66357	1	1	1
Del Peak 22(18q12.1)	0 (0%)	28	0.019967	1	0.084368	1	0.11305	1	0.33792	1	0.083495	1	0.088884	1	0.063179	1	0.14104	1
Del Peak 23(18q21.2)	0 (0%)	20	0.0026711	0.729	0.00094608	0.275	0.0090731	1	0.022586	1	0.008608	1	0.0019678	0.551	0.0011491	0.328	0.0043565	1
Del Peak 24(19q13.33)	0 (0%)	58	0.0018906	0.533	0.085081	1	0.81919	1	1	1	0.84806	1	0.74022	1	0.46088	1	0.64301	1
Del Peak 25(21q22.11)	0 (0%)	43	0.019236	1	0.15777	1	0.15378	1	0.0037574	0.996	0.037923	1	0.26472	1	0.068496	1	0.18061	1
Del Peak 26(21q22.11)	0 (0%)	43	0.019236	1	0.15777	1	0.15378	1	0.0037574	0.996	0.037923	1	0.26472	1	0.068496	1	0.18061	1
Del Peak 27(22q13.31)	0 (0%)	49	0.0060043	1	0.15024	1	0.35815	1	0.25998	1	0.37961	1	0.42411	1	0.28588	1	0.32632	1
Del Peak 28(Xq21.1)	0 (0%)	58	0.00041044	0.127	0.029865	1	0.36473	1	0.78246	1	0.2518	1	0.5542	1	0.070445	1	0.39634	1
