
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/SARC-TP/4430099/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/SARC-TP/4401947/SARC-TP.clin.merged.picked.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=SARC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=SARC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/SARC-TP/4401947/SARC-TP.clin.merged.picked.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/SARC-TP/4430099/transformed.cor.cli.txt"

nPatients in clinical file=74, in cluster file=83, common to both=57
[1] "Reduce the number of clustering variables from 80 to 78."
[1] 78 57
[1] "1P GAIN MUTATION ANALYSIS"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               11                46 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               11                46 
[1] "1Q GAIN MUTATION ANALYSIS"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
                9                48 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
                9                48 
[1] "2P GAIN MUTATION ANALYSIS"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
                9                48 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
                9                48 
[1] "2Q GAIN MUTATION ANALYSIS"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                6                51 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                6                51 
[1] "3P GAIN MUTATION ANALYSIS"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                6                51 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                6                51 
[1] "3Q GAIN MUTATION ANALYSIS"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
                7                50 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
                7                50 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               10                47 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               10                47 
[1] "4Q GAIN MUTATION ANALYSIS"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                8                49 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                8                49 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               13                44 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               13                44 
[1] "5Q GAIN MUTATION ANALYSIS"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               11                46 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               11                46 
[1] "6P GAIN MUTATION ANALYSIS"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               10                47 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               10                47 
[1] "6Q GAIN MUTATION ANALYSIS"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               12                45 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               12                45 
[1] "7P GAIN MUTATION ANALYSIS"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               16                41 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               16                41 
[1] "7Q GAIN MUTATION ANALYSIS"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               14                43 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               14                43 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               12                45 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               12                45 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               12                45 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               12                45 
[1] "9P GAIN MUTATION ANALYSIS"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                9                48 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                9                48 
[1] "9Q GAIN MUTATION ANALYSIS"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               14                43 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               14                43 
[1] "10P GAIN MUTATION ANALYSIS"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 5                 52 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 5                 52 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 3                 54 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 3                 54 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 3                 54 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 3                 54 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                 8                 49 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                 8                 49 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 4                 53 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 4                 53 
[1] "14Q GAIN MUTATION ANALYSIS"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 9                 48 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 9                 48 
[1] "15Q GAIN MUTATION ANALYSIS"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                12                 45 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                12                 45 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                11                 46 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                11                 46 
[1] "16Q GAIN MUTATION ANALYSIS"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 4                 53 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 4                 53 
[1] "17P GAIN MUTATION ANALYSIS"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                12                 45 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                12                 45 
[1] "17Q GAIN MUTATION ANALYSIS"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                10                 47 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                10                 47 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                10                 47 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                10                 47 
[1] "18Q GAIN MUTATION ANALYSIS"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                10                 47 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                10                 47 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                19                 38 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                19                 38 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                13                 44 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                13                 44 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                17                 40 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                17                 40 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                20                 37 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                20                 37 
[1] "21Q GAIN MUTATION ANALYSIS"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                11                 46 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                11                 46 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 9                 48 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 9                 48 
[1] "XQ GAIN MUTATION ANALYSIS"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                7                50 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                7                50 
[1] "1P LOSS MUTATION ANALYSIS"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               10                47 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               10                47 
[1] "1Q LOSS MUTATION ANALYSIS"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               10                47 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               10                47 
[1] "2P LOSS MUTATION ANALYSIS"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               10                47 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               10                47 
[1] "2Q LOSS MUTATION ANALYSIS"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               12                45 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               12                45 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               12                45 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               12                45 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               12                45 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               12                45 
[1] "4P LOSS MUTATION ANALYSIS"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               11                46 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               11                46 
[1] "4Q LOSS MUTATION ANALYSIS"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               14                43 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               14                43 
[1] "5P LOSS MUTATION ANALYSIS"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                7                50 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                7                50 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               10                47 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               10                47 
[1] "6P LOSS MUTATION ANALYSIS"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               10                47 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               10                47 
[1] "6Q LOSS MUTATION ANALYSIS"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
                5                52 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
                5                52 
[1] "7P LOSS MUTATION ANALYSIS"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                4                53 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                4                53 
[1] "7Q LOSS MUTATION ANALYSIS"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                4                53 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                4                53 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               13                44 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               13                44 
[1] "8Q LOSS MUTATION ANALYSIS"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               11                46 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               11                46 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               17                40 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               17                40 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               11                46 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               11                46 
[1] "10P LOSS MUTATION ANALYSIS"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                23                 34 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                23                 34 
[1] "10Q LOSS MUTATION ANALYSIS"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                25                 32 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                25                 32 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                25                 32 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                25                 32 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                19                 38 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                19                 38 
[1] "12P LOSS MUTATION ANALYSIS"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                12                 45 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                12                 45 
[1] "12Q LOSS MUTATION ANALYSIS"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                14                 43 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                14                 43 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                25                 32 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                25                 32 
[1] "14Q LOSS MUTATION ANALYSIS"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                21                 36 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                21                 36 
[1] "15Q LOSS MUTATION ANALYSIS"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                11                 46 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                11                 46 
[1] "16P LOSS MUTATION ANALYSIS"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                15                 42 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                15                 42 
[1] "16Q LOSS MUTATION ANALYSIS"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                27                 30 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                27                 30 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                11                 46 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                11                 46 
[1] "17Q LOSS MUTATION ANALYSIS"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 7                 50 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 7                 50 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                14                 43 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                14                 43 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                15                 42 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                15                 42 
[1] "19P LOSS MUTATION ANALYSIS"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 4                 53 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 4                 53 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                10                 47 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                10                 47 
[1] "20P LOSS MUTATION ANALYSIS"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 7                 50 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 7                 50 
[1] "20Q LOSS MUTATION ANALYSIS"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 5                 52 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 5                 52 
[1] "21Q LOSS MUTATION ANALYSIS"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                13                 44 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                13                 44 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                21                 36 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                21                 36 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               19                38 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               19                38 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
[1] "YEARSTOBIRTH"                          
[2] "VITALSTATUS"                           
[3] "DAYSTODEATH"                           
[4] "DAYSTOLASTFOLLOWUP"                    
[5] "DCCUPLOADDATE"                         
[6] "GENDER"                                
[7] "RADIATIONTHERAPY"                      
[8] "RADIATIONS.RADIATION.REGIMENINDICATION"
[9] "BATCHNUMBER"                           

Input Data has 9 rows and 57 columns.

[1] "Batch" "9"    
[1] "Last Follow UP"
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 
          NA           62          827           NA          745           NA 
TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T 
        1420         1291          960          908         2271           NA 
TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ 
          NA           NA           NA           NA         1834          260 
TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU 
          NA         1620         1309           NA          702         2144 
TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 
        3288          520          609          457          540         1301 
TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT 
          NA           14            3            2            2          818 
TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ 
          NA          126           NA          650          272           98 
TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 
          42           NA          966           NA         4362         3555 
TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF 
          NA         2229           NA          688          190           NA 
TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
         356            3         2296 
Variable 1:'AGE':	nDistinctValues=33,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=18,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=37,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 8:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 9:'BATCH.NUMBER':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"    "GENDER"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 57 columns, 1 survival variables, and 2 non-survival variables.
AGE, nv=33, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1P GAIN MUTATION ANALYSIS
D1V1, survival
                   sevent
clus2                0  1
  1P GAIN MUTATED    6  5
  1P GAIN WILD-TYPE 33 13
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               11                46 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                5                13 
$`1P GAIN MUTATED`
TCGA-DX-A23Y TCGA-DX-A2J0 TCGA-DX-A3LT TCGA-FX-A2QS TCGA-HB-A2OT TCGA-HB-A3YV 
        6.28         9.70        23.08         0.46        26.89         4.54 
TCGA-HB-A43Z TCGA-IE-A4EI TCGA-IF-A4AJ TCGA-JV-A5VF TCGA-KF-A41W 
        4.14         8.94        25.22         1.05        11.70 

$`1P GAIN WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 
       14.04         2.04        27.19        12.85        24.49        18.51 
TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T 
       46.68        42.44        31.56        29.85        74.66         5.23 
TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J1 
       76.37        66.87        27.78        60.30         8.55        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 
       43.04         9.01        70.49       108.10        17.10        20.02 
TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A3NJ TCGA-FX-A3RE 
       15.02        17.75        42.77         4.50         0.10         0.07 
TCGA-FX-A48G TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AK 
        0.07        12.62        21.37         3.22         1.38        31.76 
TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 
       28.21       143.41       116.88        13.58        73.28         5.88 
TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-MO-A47R TCGA-PC-A5DK 
       22.62         6.25         0.10        75.48 

  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             0.46              0.07 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
            26.89            143.41 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
            8.940            21.995 
[1] "0.5 - 26.9 (8.9)"   "0.1 - 143.4 (22.0)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"1P GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"1P GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"1P GAIN WILD-TYPE" 
[1] "hr=" "3.8"
D1V2, continuous
D1V3, binary
                   cls
clus                 0  1
  1P GAIN MUTATED    6  5
  1P GAIN WILD-TYPE 22 24
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      6    5
  1P GAIN WILD-TYPE   22   24
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  FEMALE               6                22
  MALE                 5                24

Clustering(2) Variable = 1Q GAIN MUTATION ANALYSIS
D2V1, survival
                   sevent
clus2                0  1
  1Q GAIN MUTATED    7  2
  1Q GAIN WILD-TYPE 32 16
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
                9                48 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
                2                16 
$`1Q GAIN MUTATED`
TCGA-DX-A1L2 TCGA-DX-A23Y TCGA-DX-A3LT TCGA-HB-A2OT TCGA-HB-A43Z TCGA-IE-A4EI 
       42.44         6.28        23.08        26.89         4.14         8.94 
TCGA-IF-A4AJ TCGA-IW-A3M6 TCGA-KF-A41W 
       25.22        22.62        11.70 

$`1Q GAIN WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 
       14.04         2.04        27.19        12.85        24.49        18.51 
TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U 
       46.68        31.56        29.85        74.66         5.23        76.37 
TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 
       66.87        27.78        60.30         8.55         9.70        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 
       43.04         9.01        70.49       108.10        17.10        20.02 
TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ 
       15.02        17.75        42.77         4.50         0.46         0.10 
TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EJ 
        0.07         0.07         4.54        12.62        21.37         3.22 
TCGA-IE-A4EK TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA 
        1.38        31.76        28.21       143.41       116.88        13.58 
TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-MO-A47R TCGA-PC-A5DK 
       73.28         5.88         6.25         1.05         0.10        75.48 

  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
             4.14              0.07 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
            42.44            143.41 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
            22.62             18.13 
[1] "4.1 - 42.4 (22.6)"  "0.1 - 143.4 (18.1)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"1Q GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"1Q GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"1Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D2V2, continuous
D2V3, binary
                   cls
clus                 0  1
  1Q GAIN MUTATED    5  4
  1Q GAIN WILD-TYPE 23 25
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED      5    4
  1Q GAIN WILD-TYPE   23   25
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  FEMALE               5                23
  MALE                 4                25

Clustering(3) Variable = 2P GAIN MUTATION ANALYSIS
D3V1, survival
                   sevent
clus2                0  1
  2P GAIN MUTATED    6  3
  2P GAIN WILD-TYPE 33 15
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
                9                48 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
                3                15 
$`2P GAIN MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A3LT TCGA-FX-A2QS 
       14.04         2.04        74.66         6.28        23.08         0.46 
TCGA-IW-A3M5 TCGA-KF-A41W TCGA-MO-A47R 
        5.88        11.70         0.10 

$`2P GAIN WILD-TYPE`
TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 
       27.19        12.85        24.49        18.51        46.68        42.44 
TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z 
       31.56        29.85         5.23        76.37        66.87        27.78 
TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS 
       60.30         8.55         9.70        53.26        43.04         9.01 
TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 
       70.49       108.10        17.10        20.02        15.02        17.75 
TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT 
       42.77         4.50         0.10         0.07         0.07        26.89 
TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ 
        4.54         4.14        12.62        21.37         8.94         3.22 
TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 
        1.38        25.22        31.76        28.21       143.41       116.88 
TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-PC-A5DK 
       13.58        73.28        22.62         6.25         1.05        75.48 

  2P GAIN MUTATED 2P GAIN WILD-TYPE 
             0.10              0.07 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
            74.66            143.41 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
            6.280            21.995 
[1] "0.1 - 74.7 (6.3)"   "0.1 - 143.4 (22.0)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-PC-A5DK 
"2P GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-PC-A5DK 
"2P GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-PC-A5DK 
"2P GAIN WILD-TYPE" 
[1] "hr=" "2"  
D3V2, continuous
D3V3, binary
                   cls
clus                 0  1
  2P GAIN MUTATED    5  4
  2P GAIN WILD-TYPE 23 25
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED      5    4
  2P GAIN WILD-TYPE   23   25
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  FEMALE               5                23
  MALE                 4                25

Clustering(4) Variable = 2Q GAIN MUTATION ANALYSIS
D4V1, survival
                   sevent
clus2                0  1
  2Q GAIN MUTATED    5  1
  2Q GAIN WILD-TYPE 34 17
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                6                51 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                1                17 
$`2Q GAIN MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A23R TCGA-DX-A3LT TCGA-KF-A41W TCGA-MO-A47R 
       14.04         2.04        74.66        23.08        11.70         0.10 

$`2Q GAIN WILD-TYPE`
TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 
       27.19        12.85        24.49        18.51        46.68        42.44 
TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y 
       31.56        29.85         5.23        76.37        66.87         6.28 
TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 
       27.78        60.30         8.55         9.70        53.26        43.04 
TCGA-DX-A3LS TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 
        9.01        70.49       108.10        17.10        20.02        15.02 
TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE 
       17.75        42.77         4.50         0.46         0.10         0.07 
TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH 
        0.07        26.89         4.54         4.14        12.62        21.37 
TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 
        8.94         3.22         1.38        25.22        31.76        28.21 
TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 
      143.41       116.88        13.58        73.28         5.88        22.62 
TCGA-JV-A5VE TCGA-JV-A5VF TCGA-PC-A5DK 
        6.25         1.05        75.48 

  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
             0.10              0.07 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
            74.66            143.41 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
            12.87             20.02 
[1] "0.1 - 74.7 (12.9)"  "0.1 - 143.4 (20.0)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-PC-A5DK 
"2Q GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-PC-A5DK 
"2Q GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-PC-A5DK 
"2Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D4V2, continuous
D4V3, binary
                   cls
clus                 0  1
  2Q GAIN MUTATED    3  3
  2Q GAIN WILD-TYPE 25 26
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      3    3
  2Q GAIN WILD-TYPE   25   26
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  FEMALE               3                25
  MALE                 3                26

Clustering(5) Variable = 3P GAIN MUTATION ANALYSIS
D5V1, survival
                   sevent
clus2                0  1
  3P GAIN MUTATED    4  2
  3P GAIN WILD-TYPE 35 16
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                6                51 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                2                16 
$`3P GAIN MUTATED`
TCGA-DX-A23Y TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-HB-A2OT TCGA-IE-A4EI TCGA-KF-A41W 
        6.28        42.77         4.50        26.89         8.94        11.70 

$`3P GAIN WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 
       14.04         2.04        27.19        12.85        24.49        18.51 
TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T 
       46.68        42.44        31.56        29.85        74.66         5.23 
TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 
       76.37        66.87        27.78        60.30         8.55         9.70 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW 
       53.26        43.04         9.01        23.08        70.49       108.10 
TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-FX-A2QS TCGA-FX-A3NJ 
       17.10        20.02        15.02        17.75         0.46         0.10 
TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH 
        0.07         0.07         4.54         4.14        12.62        21.37 
TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 
        3.22         1.38        25.22        31.76        28.21       143.41 
TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE 
      116.88        13.58        73.28         5.88        22.62         6.25 
TCGA-JV-A5VF TCGA-MO-A47R TCGA-PC-A5DK 
        1.05         0.10        75.48 

  3P GAIN MUTATED 3P GAIN WILD-TYPE 
             4.50              0.07 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
            42.77            143.41 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
            10.32             20.02 
[1] "4.5 - 42.8 (10.3)"  "0.1 - 143.4 (20.0)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"3P GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"3P GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"3P GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D5V2, continuous
D5V3, binary
                   cls
clus                 0  1
  3P GAIN MUTATED    3  3
  3P GAIN WILD-TYPE 25 26
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      3    3
  3P GAIN WILD-TYPE   25   26
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  FEMALE               3                25
  MALE                 3                26

Clustering(6) Variable = 3Q GAIN MUTATION ANALYSIS
D6V1, survival
                   sevent
clus2                0  1
  3Q GAIN MUTATED    4  3
  3Q GAIN WILD-TYPE 35 15
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
                7                50 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
                3                15 
$`3Q GAIN MUTATED`
TCGA-DX-A23Y TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-HB-A2OT TCGA-IE-A4EI TCGA-JV-A5VF 
        6.28        42.77         4.50        26.89         8.94         1.05 
TCGA-KF-A41W 
       11.70 

$`3Q GAIN WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 
       14.04         2.04        27.19        12.85        24.49        18.51 
TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T 
       46.68        42.44        31.56        29.85        74.66         5.23 
TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 
       76.37        66.87        27.78        60.30         8.55         9.70 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW 
       53.26        43.04         9.01        23.08        70.49       108.10 
TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-FX-A2QS TCGA-FX-A3NJ 
       17.10        20.02        15.02        17.75         0.46         0.10 
TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH 
        0.07         0.07         4.54         4.14        12.62        21.37 
TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 
        3.22         1.38        25.22        31.76        28.21       143.41 
TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE 
      116.88        13.58        73.28         5.88        22.62         6.25 
TCGA-MO-A47R TCGA-PC-A5DK 
        0.10        75.48 

  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
             1.05              0.07 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
            42.77            143.41 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
            8.940            20.695 
[1] "1.1 - 42.8 (8.9)"   "0.1 - 143.4 (20.7)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"3Q GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"3Q GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"3Q GAIN WILD-TYPE" 
[1] "hr=" "2.5"
D6V2, continuous
D6V3, binary
                   cls
clus                 0  1
  3Q GAIN MUTATED    4  3
  3Q GAIN WILD-TYPE 24 26
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED      4    3
  3Q GAIN WILD-TYPE   24   26
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  FEMALE               4                24
  MALE                 3                26

Clustering(7) Variable = 4P GAIN MUTATION ANALYSIS
D7V1, survival
                   sevent
clus2                0  1
  4P GAIN MUTATED    7  3
  4P GAIN WILD-TYPE 32 15
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               10                47 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                3                15 
$`4P GAIN MUTATED`
TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A23R TCGA-HB-A3YV TCGA-IE-A4EJ 
       27.19        18.51        46.68        74.66         4.54         3.22 
TCGA-IF-A4AJ TCGA-IS-A3K7 TCGA-JV-A5VE TCGA-KF-A41W 
       25.22       143.41         6.25        11.70 

$`4P GAIN WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L2 TCGA-DX-A1L3 
       14.04         2.04        12.85        24.49        42.44        31.56 
TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z 
       29.85         5.23        76.37        66.87         6.28        27.78 
TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS 
       60.30         8.55         9.70        53.26        43.04         9.01 
TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 
       23.08        70.49       108.10        17.10        20.02        15.02 
TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE 
       17.75        42.77         4.50         0.46         0.10         0.07 
TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI 
        0.07        26.89         4.14        12.62        21.37         8.94 
TCGA-IE-A4EK TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 
        1.38        31.76        28.21       116.88        13.58        73.28 
TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VF TCGA-MO-A47R TCGA-PC-A5DK 
        5.88        22.62         1.05         0.10        75.48 

  4P GAIN MUTATED 4P GAIN WILD-TYPE 
             3.22              0.07 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
           143.41            116.88 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
           21.865            17.750 
[1] "3.2 - 143.4 (21.9)" "0.1 - 116.9 (17.8)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"4P GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"4P GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"4P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D7V2, continuous
D7V3, binary
                   cls
clus                 0  1
  4P GAIN MUTATED    6  4
  4P GAIN WILD-TYPE 22 25
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      6    4
  4P GAIN WILD-TYPE   22   25
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  FEMALE               6                22
  MALE                 4                25

Clustering(8) Variable = 4Q GAIN MUTATION ANALYSIS
D8V1, survival
                   sevent
clus2                0  1
  4Q GAIN MUTATED    5  3
  4Q GAIN WILD-TYPE 34 15
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                8                49 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                3                15 
$`4Q GAIN MUTATED`
TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A3LY TCGA-HB-A3YV TCGA-IF-A4AJ 
       27.19        18.51        46.68        17.10         4.54        25.22 
TCGA-IS-A3K7 TCGA-JV-A5VE 
      143.41         6.25 

$`4Q GAIN WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L2 TCGA-DX-A1L3 
       14.04         2.04        12.85        24.49        42.44        31.56 
TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y 
       29.85        74.66         5.23        76.37        66.87         6.28 
TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 
       27.78        60.30         8.55         9.70        53.26        43.04 
TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3M1 TCGA-DX-A3U5 
        9.01        23.08        70.49       108.10        20.02        15.02 
TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE 
       17.75        42.77         4.50         0.46         0.10         0.07 
TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI 
        0.07        26.89         4.14        12.62        21.37         8.94 
TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IS-A3KA 
        3.22         1.38        31.76        28.21       116.88        13.58 
TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VF TCGA-KF-A41W TCGA-MO-A47R 
       73.28         5.88        22.62         1.05        11.70         0.10 
TCGA-PC-A5DK 
       75.48 

  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
             4.54              0.07 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
           143.41            116.88 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
           21.865            17.750 
[1] "4.5 - 143.4 (21.9)" "0.1 - 116.9 (17.8)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"4Q GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"4Q GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"4Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D8V2, continuous
D8V3, binary
                   cls
clus                 0  1
  4Q GAIN MUTATED    3  5
  4Q GAIN WILD-TYPE 25 24
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      3    5
  4Q GAIN WILD-TYPE   25   24
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  FEMALE               3                25
  MALE                 5                24

Clustering(9) Variable = 5P GAIN MUTATION ANALYSIS
D9V1, survival
                   sevent
clus2                0  1
  5P GAIN MUTATED    9  4
  5P GAIN WILD-TYPE 30 14
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               13                44 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
                4                14 
$`5P GAIN MUTATED`
TCGA-DX-A1KX TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A23Y TCGA-DX-A3LY TCGA-DX-A3U7 
       27.19        46.68        31.56         6.28        17.10        42.77 
TCGA-DX-A3U8 TCGA-HB-A2OT TCGA-HB-A3YV TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IF-A4AJ 
        4.50        26.89         4.54         8.94         3.22        25.22 
TCGA-MO-A47R 
        0.10 

$`5P GAIN WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L2 
       14.04         2.04        12.85        24.49        18.51        42.44 
TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z 
       29.85        74.66         5.23        76.37        66.87        27.78 
TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS 
       60.30         8.55         9.70        53.26        43.04         9.01 
TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 
       23.08        70.49       108.10        20.02        15.02        17.75 
TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A43Z TCGA-HB-A5W3 
        0.46         0.10         0.07         0.07         4.14        12.62 
TCGA-IE-A4EH TCGA-IE-A4EK TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 
       21.37         1.38        31.76        28.21       143.41       116.88 
TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF 
       13.58        73.28         5.88        22.62         6.25         1.05 
TCGA-KF-A41W TCGA-PC-A5DK 
       11.70        75.48 

  5P GAIN MUTATED 5P GAIN WILD-TYPE 
             0.10              0.07 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
            46.68            143.41 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
           17.100            19.265 
[1] "0.1 - 46.7 (17.1)"  "0.1 - 143.4 (19.3)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-PC-A5DK 
"5P GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-PC-A5DK 
"5P GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-PC-A5DK 
"5P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D9V2, continuous
D9V3, binary
                   cls
clus                 0  1
  5P GAIN MUTATED    6  7
  5P GAIN WILD-TYPE 22 22
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED      6    7
  5P GAIN WILD-TYPE   22   22
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  FEMALE               6                22
  MALE                 7                22

Clustering(10) Variable = 5Q GAIN MUTATION ANALYSIS
D10V1, survival
                   sevent
clus2                0  1
  5Q GAIN MUTATED    7  4
  5Q GAIN WILD-TYPE 32 14
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               11                46 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                4                14 
$`5Q GAIN MUTATED`
TCGA-DX-A1KX TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A23Y TCGA-DX-A3U8 TCGA-HB-A3YV 
       27.19        46.68        31.56         6.28         4.50         4.54 
TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IS-A3K7 TCGA-IS-A3KA TCGA-MO-A47R 
        8.94         3.22       143.41        13.58         0.10 

$`5Q GAIN WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L2 
       14.04         2.04        12.85        24.49        18.51        42.44 
TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z 
       29.85        74.66         5.23        76.37        66.87        27.78 
TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS 
       60.30         8.55         9.70        53.26        43.04         9.01 
TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 
       23.08        70.49       108.10        17.10        20.02        15.02 
TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G 
       17.75        42.77         0.46         0.10         0.07         0.07 
TCGA-HB-A2OT TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EK TCGA-IF-A4AJ 
       26.89         4.14        12.62        21.37         1.38        25.22 
TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 
       31.76        28.21       116.88        73.28         5.88        22.62 
TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W TCGA-PC-A5DK 
        6.25         1.05        11.70        75.48 

  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
             0.10              0.07 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
           143.41            116.88 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
            8.940            20.695 
[1] "0.1 - 143.4 (8.9)"  "0.1 - 116.9 (20.7)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-PC-A5DK 
"5Q GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-PC-A5DK 
"5Q GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-PC-A5DK 
"5Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D10V2, continuous
D10V3, binary
                   cls
clus                 0  1
  5Q GAIN MUTATED    7  4
  5Q GAIN WILD-TYPE 21 25
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      7    4
  5Q GAIN WILD-TYPE   21   25
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  FEMALE               7                21
  MALE                 4                25

Clustering(11) Variable = 6P GAIN MUTATION ANALYSIS
D11V1, survival
                   sevent
clus2                0  1
  6P GAIN MUTATED    7  3
  6P GAIN WILD-TYPE 32 15
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               10                47 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
                3                15 
$`6P GAIN MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1L2 TCGA-DX-A23Y TCGA-DX-A2J1 TCGA-HB-A2OT 
        2.04        27.19        42.44         6.28        53.26        26.89 
TCGA-HB-A3YV TCGA-IE-A4EJ TCGA-IS-A3K7 TCGA-IW-A3M5 
        4.54         3.22       143.41         5.88 

$`6P GAIN WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L3 
       14.04        12.85        24.49        18.51        46.68        31.56 
TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z 
       29.85        74.66         5.23        76.37        66.87        27.78 
TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT 
       60.30         8.55         9.70        43.04         9.01        23.08 
TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 
       70.49       108.10        17.10        20.02        15.02        17.75 
TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G 
       42.77         4.50         0.46         0.10         0.07         0.07 
TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AJ 
        4.14        12.62        21.37         8.94         1.38        25.22 
TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M6 
       31.76        28.21       116.88        13.58        73.28        22.62 
TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
        6.25         1.05        11.70         0.10        75.48 

  6P GAIN MUTATED 6P GAIN WILD-TYPE 
             2.04              0.07 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
           143.41            116.88 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
           16.585            18.510 
[1] "2.0 - 143.4 (16.6)" "0.1 - 116.9 (18.5)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"6P GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"6P GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"6P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D11V2, continuous
D11V3, binary
                   cls
clus                 0  1
  6P GAIN MUTATED    5  5
  6P GAIN WILD-TYPE 23 24
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      5    5
  6P GAIN WILD-TYPE   23   24
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  FEMALE               5                23
  MALE                 5                24

Clustering(12) Variable = 6Q GAIN MUTATION ANALYSIS
D12V1, survival
                   sevent
clus2                0  1
  6Q GAIN MUTATED    8  4
  6Q GAIN WILD-TYPE 31 14
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               12                45 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                4                14 
$`6Q GAIN MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-DX-A23Y TCGA-DX-A2J1 TCGA-DX-A3LT 
        2.04        27.19        18.51         6.28        53.26        23.08 
TCGA-DX-A3LY TCGA-HB-A2OT TCGA-HB-A3YV TCGA-IE-A4EJ TCGA-IS-A3K7 TCGA-IW-A3M5 
       17.10        26.89         4.54         3.22       143.41         5.88 

$`6Q GAIN WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 
       14.04        12.85        24.49        46.68        42.44        31.56 
TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z 
       29.85        74.66         5.23        76.37        66.87        27.78 
TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU 
       60.30         8.55         9.70        43.04         9.01        70.49 
TCGA-DX-A3LW TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 
      108.10        20.02        15.02        17.75        42.77         4.50 
TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A43Z TCGA-HB-A5W3 
        0.46         0.10         0.07         0.07         4.14        12.62 
TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 
       21.37         8.94         1.38        25.22        31.76        28.21 
TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF 
      116.88        13.58        73.28        22.62         6.25         1.05 
TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
       11.70         0.10        75.48 

  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
             2.04              0.07 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
           143.41            116.88 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
           17.805            20.020 
[1] "2.0 - 143.4 (17.8)" "0.1 - 116.9 (20.0)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"6Q GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"6Q GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"6Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D12V2, continuous
D12V3, binary
                   cls
clus                 0  1
  6Q GAIN MUTATED    5  7
  6Q GAIN WILD-TYPE 23 22
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      5    7
  6Q GAIN WILD-TYPE   23   22
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  FEMALE               5                23
  MALE                 7                22

Clustering(13) Variable = 7P GAIN MUTATION ANALYSIS
D13V1, survival
                   sevent
clus2                0  1
  7P GAIN MUTATED   11  5
  7P GAIN WILD-TYPE 28 13
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               16                41 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
                5                13 
$`7P GAIN MUTATED`
TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L2 TCGA-DX-A23R TCGA-DX-A3LT 
       27.19        12.85        24.49        42.44        74.66        23.08 
TCGA-FX-A3RE TCGA-HB-A2OT TCGA-HB-A3YV TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IS-A3K7 
        0.07        26.89         4.54         8.94         3.22       143.41 
TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-JV-A5VF TCGA-MO-A47R 
       13.58         5.88         1.05         0.10 

$`7P GAIN WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A1L4 
       14.04         2.04        18.51        46.68        31.56        29.85 
TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 
        5.23        76.37        66.87         6.28        27.78        60.30 
TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU 
        8.55         9.70        53.26        43.04         9.01        70.49 
TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 
      108.10        17.10        20.02        15.02        17.75        42.77 
TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A48G TCGA-HB-A43Z TCGA-HB-A5W3 
        4.50         0.46         0.10         0.07         4.14        12.62 
TCGA-IE-A4EH TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K8 
       21.37         1.38        25.22        31.76        28.21       116.88 
TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-KF-A41W TCGA-PC-A5DK 
       73.28        22.62         6.25        11.70        75.48 

  7P GAIN MUTATED 7P GAIN WILD-TYPE 
             0.07              0.07 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
           143.41            116.88 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
           13.215            20.020 
[1] "0.1 - 143.4 (13.2)" "0.1 - 116.9 (20.0)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-PC-A5DK 
"7P GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-PC-A5DK 
"7P GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-PC-A5DK 
"7P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D13V2, continuous
D13V3, binary
                   cls
clus                 0  1
  7P GAIN MUTATED   11  5
  7P GAIN WILD-TYPE 17 24
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     11    5
  7P GAIN WILD-TYPE   17   24
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  FEMALE              11                17
  MALE                 5                24

Clustering(14) Variable = 7Q GAIN MUTATION ANALYSIS
D14V1, survival
                   sevent
clus2                0  1
  7Q GAIN MUTATED   10  4
  7Q GAIN WILD-TYPE 29 14
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               14                43 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
                4                14 
$`7Q GAIN MUTATED`
TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L2 TCGA-DX-A3LT TCGA-FX-A3RE 
       27.19        12.85        24.49        42.44        23.08         0.07 
TCGA-HB-A2OT TCGA-HB-A3YV TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IS-A3K7 TCGA-IS-A3KA 
       26.89         4.54         8.94         3.22       143.41        13.58 
TCGA-JV-A5VF TCGA-MO-A47R 
        1.05         0.10 

$`7Q GAIN WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A1L4 
       14.04         2.04        18.51        46.68        31.56        29.85 
TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z 
       74.66         5.23        76.37        66.87         6.28        27.78 
TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS 
       60.30         8.55         9.70        53.26        43.04         9.01 
TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 
       70.49       108.10        17.10        20.02        15.02        17.75 
TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A48G TCGA-HB-A43Z 
       42.77         4.50         0.46         0.10         0.07         4.14 
TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 
       12.62        21.37         1.38        25.22        31.76        28.21 
TCGA-IS-A3K8 TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-KF-A41W 
      116.88        73.28         5.88        22.62         6.25        11.70 
TCGA-PC-A5DK 
       75.48 

  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
             0.07              0.07 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
           143.41            116.88 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
           13.215            20.020 
[1] "0.1 - 143.4 (13.2)" "0.1 - 116.9 (20.0)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-PC-A5DK 
"7Q GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-PC-A5DK 
"7Q GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-PC-A5DK 
"7Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D14V2, continuous
D14V3, binary
                   cls
clus                 0  1
  7Q GAIN MUTATED    9  5
  7Q GAIN WILD-TYPE 19 24
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED      9    5
  7Q GAIN WILD-TYPE   19   24
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  FEMALE               9                19
  MALE                 5                24

Clustering(15) Variable = 8P GAIN MUTATION ANALYSIS
D15V1, survival
                   sevent
clus2                0  1
  8P GAIN MUTATED    5  7
  8P GAIN WILD-TYPE 34 11
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               12                45 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
                7                11 
$`8P GAIN MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KY TCGA-DX-A23R TCGA-DX-A3U8 TCGA-FX-A3NJ TCGA-HB-A3YV 
       14.04        12.85        74.66         4.50         0.10         4.54 
TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-JV-A5VF TCGA-MO-A47R 
        8.94         3.22        13.58         5.88         1.05         0.10 

$`8P GAIN WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 
        2.04        27.19        24.49        18.51        46.68        42.44 
TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y 
       31.56        29.85         5.23        76.37        66.87         6.28 
TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 
       27.78        60.30         8.55         9.70        53.26        43.04 
TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 
        9.01        23.08        70.49       108.10        17.10        20.02 
TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-FX-A2QS TCGA-FX-A3RE TCGA-FX-A48G 
       15.02        17.75        42.77         0.46         0.07         0.07 
TCGA-HB-A2OT TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EK TCGA-IF-A4AJ 
       26.89         4.14        12.62        21.37         1.38        25.22 
TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IW-A3M4 TCGA-IW-A3M6 
       31.76        28.21       143.41       116.88        73.28        22.62 
TCGA-JV-A5VE TCGA-KF-A41W TCGA-PC-A5DK 
        6.25        11.70        75.48 

  8P GAIN MUTATED 8P GAIN WILD-TYPE 
             0.10              0.07 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
            74.66            143.41 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
             5.21             24.49 
[1] "0.1 - 74.7 (5.2)"   "0.1 - 143.4 (24.5)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-PC-A5DK 
"8P GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-PC-A5DK 
"8P GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-PC-A5DK 
"8P GAIN WILD-TYPE" 
[1] "hr=" "6.5"
D15V2, continuous
D15V3, binary
                   cls
clus                 0  1
  8P GAIN MUTATED    7  5
  8P GAIN WILD-TYPE 21 24
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED      7    5
  8P GAIN WILD-TYPE   21   24
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  FEMALE               7                21
  MALE                 5                24

Clustering(16) Variable = 8Q GAIN MUTATION ANALYSIS
D16V1, survival
                   sevent
clus2                0  1
  8Q GAIN MUTATED    5  7
  8Q GAIN WILD-TYPE 34 11
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               12                45 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
                7                11 
$`8Q GAIN MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KY TCGA-DX-A23R TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ 
       14.04        12.85        74.66         4.50         0.46         0.10 
TCGA-HB-A3YV TCGA-IE-A4EI TCGA-IF-A4AJ TCGA-IW-A3M5 TCGA-JV-A5VF TCGA-MO-A47R 
        4.54         8.94        25.22         5.88         1.05         0.10 

$`8Q GAIN WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 
        2.04        27.19        24.49        18.51        46.68        42.44 
TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y 
       31.56        29.85         5.23        76.37        66.87         6.28 
TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 
       27.78        60.30         8.55         9.70        53.26        43.04 
TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 
        9.01        23.08        70.49       108.10        17.10        20.02 
TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT 
       15.02        17.75        42.77         0.07         0.07        26.89 
TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AK 
        4.14        12.62        21.37         3.22         1.38        31.76 
TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M6 
       28.21       143.41       116.88        13.58        73.28        22.62 
TCGA-JV-A5VE TCGA-KF-A41W TCGA-PC-A5DK 
        6.25        11.70        75.48 

  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
             0.10              0.07 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
            74.66            143.41 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
             5.21             23.08 
[1] "0.1 - 74.7 (5.2)"   "0.1 - 143.4 (23.1)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-PC-A5DK 
"8Q GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-PC-A5DK 
"8Q GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-PC-A5DK 
"8Q GAIN WILD-TYPE" 
[1] "hr=" "5.9"
D16V2, continuous
D16V3, binary
                   cls
clus                 0  1
  8Q GAIN MUTATED    6  6
  8Q GAIN WILD-TYPE 22 23
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED      6    6
  8Q GAIN WILD-TYPE   22   23
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  FEMALE               6                22
  MALE                 6                23

Clustering(17) Variable = 9P GAIN MUTATION ANALYSIS
D17V1, survival
                   sevent
clus2                0  1
  9P GAIN MUTATED    7  2
  9P GAIN WILD-TYPE 32 16
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                9                48 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                2                16 
$`9P GAIN MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L2 TCGA-DX-A3LU TCGA-DX-A3U7 
        2.04        27.19        24.49        42.44        70.49        42.77 
TCGA-IS-A3KA TCGA-JV-A5VF TCGA-KF-A41W 
       13.58         1.05        11.70 

$`9P GAIN WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A1L4 
       14.04        12.85        18.51        46.68        31.56        29.85 
TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z 
       74.66         5.23        76.37        66.87         6.28        27.78 
TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS 
       60.30         8.55         9.70        53.26        43.04         9.01 
TCGA-DX-A3LT TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 
       23.08       108.10        17.10        20.02        15.02        17.75 
TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT 
        4.50         0.46         0.10         0.07         0.07        26.89 
TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ 
        4.54         4.14        12.62        21.37         8.94         3.22 
TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 
        1.38        25.22        31.76        28.21       143.41       116.88 
TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-MO-A47R TCGA-PC-A5DK 
       73.28         5.88        22.62         6.25         0.10        75.48 

  9P GAIN MUTATED 9P GAIN WILD-TYPE 
             1.05              0.07 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
            70.49            143.41 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
            24.49             18.13 
[1] "1.1 - 70.5 (24.5)"  "0.1 - 143.4 (18.1)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"9P GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"9P GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"9P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D17V2, continuous
D17V3, binary
                   cls
clus                 0  1
  9P GAIN MUTATED    4  5
  9P GAIN WILD-TYPE 24 24
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED      4    5
  9P GAIN WILD-TYPE   24   24
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  FEMALE               4                24
  MALE                 5                24

Clustering(18) Variable = 9Q GAIN MUTATION ANALYSIS
D18V1, survival
                   sevent
clus2                0  1
  9Q GAIN MUTATED   12  2
  9Q GAIN WILD-TYPE 27 16
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               14                43 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
                2                16 
$`9Q GAIN MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A23R 
        2.04        27.19        24.49        46.68        42.44        74.66 
TCGA-DX-A23Y TCGA-DX-A3LU TCGA-DX-A3M1 TCGA-DX-A3U7 TCGA-FX-A2QS TCGA-IE-A4EI 
        6.28        70.49        20.02        42.77         0.46         8.94 
TCGA-JV-A5VF TCGA-KF-A41W 
        1.05        11.70 

$`9Q GAIN WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T 
       14.04        12.85        18.51        31.56        29.85         5.23 
TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 
       76.37        66.87        27.78        60.30         8.55         9.70 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LW TCGA-DX-A3LY 
       53.26        43.04         9.01        23.08       108.10        17.10 
TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G 
       15.02        17.75         4.50         0.10         0.07         0.07 
TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EJ 
       26.89         4.54         4.14        12.62        21.37         3.22 
TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 
        1.38        25.22        31.76        28.21       143.41       116.88 
TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-MO-A47R 
       13.58        73.28         5.88        22.62         6.25         0.10 
TCGA-PC-A5DK 
       75.48 

  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
             0.46              0.07 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
            74.66            143.41 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
           22.255            17.750 
[1] "0.5 - 74.7 (22.3)"  "0.1 - 143.4 (17.8)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"9Q GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"9Q GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"9Q GAIN WILD-TYPE" 
[1] "hr=" "2.4"
D18V2, continuous
D18V3, binary
                   cls
clus                 0  1
  9Q GAIN MUTATED    6  8
  9Q GAIN WILD-TYPE 22 21
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED      6    8
  9Q GAIN WILD-TYPE   22   21
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  FEMALE               6                22
  MALE                 8                21

Clustering(19) Variable = 10P GAIN MUTATION ANALYSIS
D19V1, survival
                    sevent
clus2                 0  1
  10P GAIN MUTATED    1  4
  10P GAIN WILD-TYPE 38 14
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 5                 52 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 4                 14 
$`10P GAIN MUTATED`
TCGA-DX-A1KU TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-IS-A3KA TCGA-JV-A5VF 
       14.04        42.77         4.50        13.58         1.05 

$`10P GAIN WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 
        2.04        27.19        12.85        24.49        18.51        46.68 
TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U 
       42.44        31.56        29.85        74.66         5.23        76.37 
TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 
       66.87         6.28        27.78        60.30         8.55         9.70 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW 
       53.26        43.04         9.01        23.08        70.49       108.10 
TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-FX-A2QS TCGA-FX-A3NJ 
       17.10        20.02        15.02        17.75         0.46         0.10 
TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 
        0.07         0.07        26.89         4.54         4.14        12.62 
TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK 
       21.37         8.94         3.22         1.38        25.22        31.76 
TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 
       28.21       143.41       116.88        73.28         5.88        22.62 
TCGA-JV-A5VE TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
        6.25        11.70         0.10        75.48 

  10P GAIN MUTATED 10P GAIN WILD-TYPE 
              1.05               0.07 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
             42.77             143.41 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
            13.580             20.695 
[1] "1.1 - 42.8 (13.6)"  "0.1 - 143.4 (20.7)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
[1] "hr=" "4.5"
D19V2, continuous
D19V3, binary
                    cls
clus                  0  1
  10P GAIN MUTATED    2  3
  10P GAIN WILD-TYPE 26 26
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      2    3
  10P GAIN WILD-TYPE   26   26
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  FEMALE                2                 26
  MALE                  3                 26

Clustering(20) Variable = 11P GAIN MUTATION ANALYSIS
D20V1, survival
                    sevent
clus2                 0  1
  11P GAIN MUTATED    2  1
  11P GAIN WILD-TYPE 37 17
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 3                 54 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 1                 17 
$`11P GAIN MUTATED`
TCGA-IE-A4EJ TCGA-IS-A3KA TCGA-KF-A41W 
        3.22        13.58        11.70 

$`11P GAIN WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 
       14.04         2.04        27.19        12.85        24.49        18.51 
TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T 
       46.68        42.44        31.56        29.85        74.66         5.23 
TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ 
       76.37        66.87         6.28        27.78        60.30         8.55 
TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU 
        9.70        53.26        43.04         9.01        23.08        70.49 
TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 
      108.10        17.10        20.02        15.02        17.75        42.77 
TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT 
        4.50         0.46         0.10         0.07         0.07        26.89 
TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EK 
        4.54         4.14        12.62        21.37         8.94         1.38 
TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IW-A3M4 
       25.22        31.76        28.21       143.41       116.88        73.28 
TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-MO-A47R TCGA-PC-A5DK 
        5.88        22.62         6.25         1.05         0.10        75.48 

  11P GAIN MUTATED 11P GAIN WILD-TYPE 
              3.22               0.07 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
             13.58             143.41 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
            11.700             20.695 
[1] "3.2 - 13.6 (11.7)"  "0.1 - 143.4 (20.7)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
[1] "hr=" "2.2"
D20V2, continuous
D20V3, binary
                    cls
clus                  0  1
  11P GAIN MUTATED    3  0
  11P GAIN WILD-TYPE 25 29
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      3    0
  11P GAIN WILD-TYPE   25   29
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  FEMALE                3                 25
  MALE                  0                 29

Clustering(21) Variable = 11Q GAIN MUTATION ANALYSIS
D21V1, survival
                    sevent
clus2                 0  1
  11Q GAIN MUTATED    3  0
  11Q GAIN WILD-TYPE 36 18
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 3                 54 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 0                 18 
$`11Q GAIN MUTATED`
TCGA-HB-A43Z TCGA-IE-A4EH TCGA-KF-A41W 
        4.14        21.37        11.70 

$`11Q GAIN WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 
       14.04         2.04        27.19        12.85        24.49        18.51 
TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T 
       46.68        42.44        31.56        29.85        74.66         5.23 
TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ 
       76.37        66.87         6.28        27.78        60.30         8.55 
TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU 
        9.70        53.26        43.04         9.01        23.08        70.49 
TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 
      108.10        17.10        20.02        15.02        17.75        42.77 
TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT 
        4.50         0.46         0.10         0.07         0.07        26.89 
TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ 
        4.54        12.62         8.94         3.22         1.38        25.22 
TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 
       31.76        28.21       143.41       116.88        13.58        73.28 
TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-MO-A47R TCGA-PC-A5DK 
        5.88        22.62         6.25         1.05         0.10        75.48 

  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
              4.14               0.07 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
             21.37             143.41 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
            11.700             19.265 
[1] "4.1 - 21.4 (11.7)"  "0.1 - 143.4 (19.3)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
[1] "hr="     "2.6e+07"
D21V2, continuous
D21V3, binary
                    cls
clus                  0  1
  11Q GAIN MUTATED    3  0
  11Q GAIN WILD-TYPE 25 29
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      3    0
  11Q GAIN WILD-TYPE   25   29
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  FEMALE                3                 25
  MALE                  0                 29

Clustering(22) Variable = 12P GAIN MUTATION ANALYSIS
D22V1, survival
                    sevent
clus2                 0  1
  12P GAIN MUTATED    2  6
  12P GAIN WILD-TYPE 37 12
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                 8                 49 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                 6                 12 
$`12P GAIN MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A3LS TCGA-HB-A3YV TCGA-IF-A4AJ 
       14.04        27.19        12.85         9.01         4.54        25.22 
TCGA-IW-A3M5 TCGA-MO-A47R 
        5.88         0.10 

$`12P GAIN WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 
        2.04        24.49        18.51        46.68        42.44        31.56 
TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y 
       29.85        74.66         5.23        76.37        66.87         6.28 
TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 
       27.78        60.30         8.55         9.70        53.26        43.04 
TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 
       23.08        70.49       108.10        17.10        20.02        15.02 
TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE 
       17.75        42.77         4.50         0.46         0.10         0.07 
TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI 
        0.07        26.89         4.14        12.62        21.37         8.94 
TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 
        3.22         1.38        31.76        28.21       143.41       116.88 
TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W 
       13.58        73.28        22.62         6.25         1.05        11.70 
TCGA-PC-A5DK 
       75.48 

  12P GAIN MUTATED 12P GAIN WILD-TYPE 
              0.10               0.07 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
             27.19             143.41 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
             10.93              21.37 
[1] "0.1 - 27.2 (10.9)"  "0.1 - 143.4 (21.4)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
[1] "hr=" "5.8"
D22V2, continuous
D22V3, binary
                    cls
clus                  0  1
  12P GAIN MUTATED    4  4
  12P GAIN WILD-TYPE 24 25
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED      4    4
  12P GAIN WILD-TYPE   24   25
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  FEMALE                4                 24
  MALE                  4                 25

Clustering(23) Variable = 12Q GAIN MUTATION ANALYSIS
D23V1, survival
                    sevent
clus2                 0  1
  12Q GAIN MUTATED    2  2
  12Q GAIN WILD-TYPE 37 16
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 4                 53 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 2                 16 
$`12Q GAIN MUTATED`
TCGA-DX-A1KX TCGA-HB-A3YV TCGA-IF-A4AJ TCGA-MO-A47R 
       27.19         4.54        25.22         0.10 

$`12Q GAIN WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 
       14.04         2.04        12.85        24.49        18.51        46.68 
TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U 
       42.44        31.56        29.85        74.66         5.23        76.37 
TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 
       66.87         6.28        27.78        60.30         8.55         9.70 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW 
       53.26        43.04         9.01        23.08        70.49       108.10 
TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 
       17.10        20.02        15.02        17.75        42.77         4.50 
TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A43Z 
        0.46         0.10         0.07         0.07        26.89         4.14 
TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AK 
       12.62        21.37         8.94         3.22         1.38        31.76 
TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 
       28.21       143.41       116.88        13.58        73.28         5.88 
TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W TCGA-PC-A5DK 
       22.62         6.25         1.05        11.70        75.48 

  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
              0.10               0.07 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
             27.19             143.41 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
             14.88              18.51 
[1] "0.1 - 27.2 (14.9)"  "0.1 - 143.4 (18.5)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
[1] "hr=" "2.7"
D23V2, continuous
D23V3, binary
                    cls
clus                  0  1
  12Q GAIN MUTATED    2  2
  12Q GAIN WILD-TYPE 26 27
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      2    2
  12Q GAIN WILD-TYPE   26   27
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  FEMALE                2                 26
  MALE                  2                 27

Clustering(24) Variable = 14Q GAIN MUTATION ANALYSIS
D24V1, survival
                    sevent
clus2                 0  1
  14Q GAIN MUTATED    4  5
  14Q GAIN WILD-TYPE 35 13
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 9                 48 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 5                 13 
$`14Q GAIN MUTATED`
TCGA-DX-A1L1 TCGA-DX-A240 TCGA-DX-A3LW TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IF-A4AJ 
       46.68        60.30       108.10         4.54        12.62        25.22 
TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-KF-A41W 
       13.58         5.88        11.70 

$`14Q GAIN WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 
       14.04         2.04        27.19        12.85        24.49        18.51 
TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U 
       42.44        31.56        29.85        74.66         5.23        76.37 
TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 
       66.87         6.28        27.78         8.55         9.70        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LY TCGA-DX-A3M1 
       43.04         9.01        23.08        70.49        17.10        20.02 
TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ 
       15.02        17.75        42.77         4.50         0.46         0.10 
TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A43Z TCGA-IE-A4EH TCGA-IE-A4EI 
        0.07         0.07        26.89         4.14        21.37         8.94 
TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 
        3.22         1.38        31.76        28.21       143.41       116.88 
TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-MO-A47R TCGA-PC-A5DK 
       73.28        22.62         6.25         1.05         0.10        75.48 

  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
              4.54               0.07 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
            108.10             143.41 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
            13.580             19.265 
[1] "4.5 - 108.1 (13.6)" "0.1 - 143.4 (19.3)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
[1] "hr=" "1.9"
D24V2, continuous
D24V3, binary
                    cls
clus                  0  1
  14Q GAIN MUTATED    4  5
  14Q GAIN WILD-TYPE 24 24
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      4    5
  14Q GAIN WILD-TYPE   24   24
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  FEMALE                4                 24
  MALE                  5                 24

Clustering(25) Variable = 15Q GAIN MUTATION ANALYSIS
D25V1, survival
                    sevent
clus2                 0  1
  15Q GAIN MUTATED    7  5
  15Q GAIN WILD-TYPE 32 13
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                12                 45 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 5                 13 
$`15Q GAIN MUTATED`
TCGA-DX-A1KX TCGA-DX-A1L4 TCGA-DX-A23U TCGA-DX-A23Y TCGA-DX-A2IZ TCGA-DX-A3U7 
       27.19        29.85        76.37         6.28         8.55        42.77 
TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IF-A4AJ TCGA-IS-A3KA 
        4.14        12.62         8.94         3.22        25.22        13.58 

$`15Q GAIN WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 
       14.04         2.04        12.85        24.49        18.51        46.68 
TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23V TCGA-DX-A23Z 
       42.44        31.56        74.66         5.23        66.87        27.78 
TCGA-DX-A240 TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT 
       60.30         9.70        53.26        43.04         9.01        23.08 
TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 
       70.49       108.10        17.10        20.02        15.02        17.75 
TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT 
        4.50         0.46         0.10         0.07         0.07        26.89 
TCGA-HB-A3YV TCGA-IE-A4EH TCGA-IE-A4EK TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 
        4.54        21.37         1.38        31.76        28.21       143.41 
TCGA-IS-A3K8 TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF 
      116.88        73.28         5.88        22.62         6.25         1.05 
TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
       11.70         0.10        75.48 

  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
              3.22               0.07 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             76.37             143.41 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             13.10              20.02 
[1] "3.2 - 76.4 (13.1)"  "0.1 - 143.4 (20.0)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D25V2, continuous
D25V3, binary
                    cls
clus                  0  1
  15Q GAIN MUTATED    6  6
  15Q GAIN WILD-TYPE 22 23
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      6    6
  15Q GAIN WILD-TYPE   22   23
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  FEMALE                6                 22
  MALE                  6                 23

Clustering(26) Variable = 16P GAIN MUTATION ANALYSIS
D26V1, survival
                    sevent
clus2                 0  1
  16P GAIN MUTATED    6  5
  16P GAIN WILD-TYPE 33 13
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                11                 46 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 5                 13 
$`16P GAIN MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A2J0 TCGA-DX-A3U5 TCGA-FX-A2QS 
       14.04         2.04        27.19         9.70        15.02         0.46 
TCGA-IE-A4EH TCGA-IF-A4AJ TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-MO-A47R 
       21.37        25.22        13.58         5.88         0.10 

$`16P GAIN WILD-TYPE`
TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 
       12.85        24.49        18.51        46.68        42.44        31.56 
TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y 
       29.85        74.66         5.23        76.37        66.87         6.28 
TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS 
       27.78        60.30         8.55        53.26        43.04         9.01 
TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U6 
       23.08        70.49       108.10        17.10        20.02        17.75 
TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT 
       42.77         4.50         0.10         0.07         0.07        26.89 
TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK 
        4.54         4.14        12.62         8.94         3.22         1.38 
TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IW-A3M4 TCGA-IW-A3M6 
       31.76        28.21       143.41       116.88        73.28        22.62 
TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W TCGA-PC-A5DK 
        6.25         1.05        11.70        75.48 

  16P GAIN MUTATED 16P GAIN WILD-TYPE 
              0.10               0.07 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
             27.19             143.41 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
             13.58              22.85 
[1] "0.1 - 27.2 (13.6)"  "0.1 - 143.4 (22.9)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "16P GAIN MUTATED"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "16P GAIN MUTATED"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "16P GAIN MUTATED"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
[1] "hr=" "2.9"
D26V2, continuous
D26V3, binary
                    cls
clus                  0  1
  16P GAIN MUTATED    6  5
  16P GAIN WILD-TYPE 22 24
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      6    5
  16P GAIN WILD-TYPE   22   24
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  FEMALE                6                 22
  MALE                  5                 24

Clustering(27) Variable = 16Q GAIN MUTATION ANALYSIS
D27V1, survival
                    sevent
clus2                 0  1
  16Q GAIN MUTATED    3  1
  16Q GAIN WILD-TYPE 36 17
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 4                 53 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 1                 17 
$`16Q GAIN MUTATED`
TCGA-DX-A1KW TCGA-DX-A3U5 TCGA-IS-A3K7 TCGA-IW-A3M5 
        2.04        15.02       143.41         5.88 

$`16Q GAIN WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 
       14.04        27.19        12.85        24.49        18.51        46.68 
TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U 
       42.44        31.56        29.85        74.66         5.23        76.37 
TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 
       66.87         6.28        27.78        60.30         8.55         9.70 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW 
       53.26        43.04         9.01        23.08        70.49       108.10 
TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS 
       17.10        20.02        17.75        42.77         4.50         0.46 
TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z 
        0.10         0.07         0.07        26.89         4.54         4.14 
TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ 
       12.62        21.37         8.94         3.22         1.38        25.22 
TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M6 
       31.76        28.21       116.88        13.58        73.28        22.62 
TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
        6.25         1.05        11.70         0.10        75.48 

  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
              2.04               0.07 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
            143.41             116.88 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
             10.45              20.02 
[1] "2.0 - 143.4 (10.4)" "0.1 - 116.9 (20.0)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D27V2, continuous
D27V3, binary
                    cls
clus                  0  1
  16Q GAIN MUTATED    2  2
  16Q GAIN WILD-TYPE 26 27
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      2    2
  16Q GAIN WILD-TYPE   26   27
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  FEMALE                2                 26
  MALE                  2                 27

Clustering(28) Variable = 17P GAIN MUTATION ANALYSIS
D28V1, survival
                    sevent
clus2                 0  1
  17P GAIN MUTATED    7  5
  17P GAIN WILD-TYPE 32 13
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                12                 45 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 5                 13 
$`17P GAIN MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A23Y TCGA-FX-A3RE 
        2.04        12.85        46.68        42.44         6.28         0.07 
TCGA-FX-A48G TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IF-A4AK TCGA-JV-A5VF TCGA-MO-A47R 
        0.07         4.54        12.62        31.76         1.05         0.10 

$`17P GAIN WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L3 TCGA-DX-A1L4 
       14.04        27.19        24.49        18.51        31.56        29.85 
TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 
       74.66         5.23        76.37        66.87        27.78        60.30 
TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT 
        8.55         9.70        53.26        43.04         9.01        23.08 
TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 
       70.49       108.10        17.10        20.02        15.02        17.75 
TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-HB-A2OT TCGA-HB-A43Z 
       42.77         4.50         0.46         0.10        26.89         4.14 
TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IS-A3K6 
       21.37         8.94         3.22         1.38        25.22        28.21 
TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 
      143.41       116.88        13.58        73.28         5.88        22.62 
TCGA-JV-A5VE TCGA-KF-A41W TCGA-PC-A5DK 
        6.25        11.70        75.48 

  17P GAIN MUTATED 17P GAIN WILD-TYPE 
              0.07               0.10 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
             46.68             143.41 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
              5.41              22.62 
[1] "0.1 - 46.7 (5.4)"   "0.1 - 143.4 (22.6)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
[1] "hr=" "3"  
D28V2, continuous
D28V3, binary
                    cls
clus                  0  1
  17P GAIN MUTATED    6  6
  17P GAIN WILD-TYPE 22 23
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      6    6
  17P GAIN WILD-TYPE   22   23
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  FEMALE                6                 22
  MALE                  6                 23

Clustering(29) Variable = 17Q GAIN MUTATION ANALYSIS
D29V1, survival
                    sevent
clus2                 0  1
  17Q GAIN MUTATED    7  3
  17Q GAIN WILD-TYPE 32 15
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                10                 47 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 3                 15 
$`17Q GAIN MUTATED`
TCGA-DX-A1KW TCGA-DX-A1L2 TCGA-DX-A23Y TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A5W3 
        2.04        42.44         6.28         0.07         0.07        12.62 
TCGA-IF-A4AK TCGA-IW-A3M4 TCGA-JV-A5VF TCGA-MO-A47R 
       31.76        73.28         1.05         0.10 

$`17Q GAIN WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 
       14.04        27.19        12.85        24.49        18.51        46.68 
TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V 
       31.56        29.85        74.66         5.23        76.37        66.87 
TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 
       27.78        60.30         8.55         9.70        53.26        43.04 
TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 
        9.01        23.08        70.49       108.10        17.10        20.02 
TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ 
       15.02        17.75        42.77         4.50         0.46         0.10 
TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ 
       26.89         4.54         4.14        21.37         8.94         3.22 
TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA 
        1.38        25.22        28.21       143.41       116.88        13.58 
TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-KF-A41W TCGA-PC-A5DK 
        5.88        22.62         6.25        11.70        75.48 

  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              0.07               0.10 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
             73.28             143.41 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              4.16              21.37 
[1] "0.1 - 73.3 (4.2)"   "0.1 - 143.4 (21.4)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
[1] "hr=" "1.7"
D29V2, continuous
D29V3, binary
                    cls
clus                  0  1
  17Q GAIN MUTATED    7  3
  17Q GAIN WILD-TYPE 21 26
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      7    3
  17Q GAIN WILD-TYPE   21   26
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  FEMALE                7                 21
  MALE                  3                 26

Clustering(30) Variable = 18P GAIN MUTATION ANALYSIS
D30V1, survival
                    sevent
clus2                 0  1
  18P GAIN MUTATED    7  3
  18P GAIN WILD-TYPE 32 15
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                10                 47 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 3                 15 
$`18P GAIN MUTATED`
TCGA-DX-A1KW TCGA-DX-A1L3 TCGA-DX-A23Y TCGA-DX-A3U7 TCGA-HB-A43Z TCGA-IE-A4EI 
        2.04        31.56         6.28        42.77         4.14         8.94 
TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-JV-A5VE TCGA-MO-A47R 
       13.58         5.88         6.25         0.10 

$`18P GAIN WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 
       14.04        27.19        12.85        24.49        18.51        46.68 
TCGA-DX-A1L2 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V 
       42.44        29.85        74.66         5.23        76.37        66.87 
TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 
       27.78        60.30         8.55         9.70        53.26        43.04 
TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 
        9.01        23.08        70.49       108.10        17.10        20.02 
TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE 
       15.02        17.75         4.50         0.46         0.10         0.07 
TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EJ 
        0.07        26.89         4.54        12.62        21.37         3.22 
TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 
        1.38        25.22        31.76        28.21       143.41       116.88 
TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-JV-A5VF TCGA-KF-A41W TCGA-PC-A5DK 
       73.28        22.62         1.05        11.70        75.48 

  18P GAIN MUTATED 18P GAIN WILD-TYPE 
              0.10               0.07 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
             42.77             143.41 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
             6.265             22.620 
[1] "0.1 - 42.8 (6.3)"   "0.1 - 143.4 (22.6)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
[1] "hr=" "1.9"
D30V2, continuous
D30V3, binary
                    cls
clus                  0  1
  18P GAIN MUTATED    7  3
  18P GAIN WILD-TYPE 21 26
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      7    3
  18P GAIN WILD-TYPE   21   26
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  FEMALE                7                 21
  MALE                  3                 26

Clustering(31) Variable = 18Q GAIN MUTATION ANALYSIS
D31V1, survival
                    sevent
clus2                 0  1
  18Q GAIN MUTATED    8  2
  18Q GAIN WILD-TYPE 31 16
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                10                 47 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 2                 16 
$`18Q GAIN MUTATED`
TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A3U7 TCGA-FX-A2QS TCGA-HB-A43Z TCGA-IE-A4EI 
       42.44        31.56        42.77         0.46         4.14         8.94 
TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-JV-A5VE TCGA-MO-A47R 
       13.58         5.88         6.25         0.10 

$`18Q GAIN WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 
       14.04         2.04        27.19        12.85        24.49        18.51 
TCGA-DX-A1L1 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V 
       46.68        29.85        74.66         5.23        76.37        66.87 
TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 
        6.28        27.78        60.30         8.55         9.70        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY 
       43.04         9.01        23.08        70.49       108.10        17.10 
TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A3NJ TCGA-FX-A3RE 
       20.02        15.02        17.75         4.50         0.10         0.07 
TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EJ 
        0.07        26.89         4.54        12.62        21.37         3.22 
TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 
        1.38        25.22        31.76        28.21       143.41       116.88 
TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-JV-A5VF TCGA-KF-A41W TCGA-PC-A5DK 
       73.28        22.62         1.05        11.70        75.48 

  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
              0.10               0.07 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
             42.77             143.41 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
             7.595             21.370 
[1] "0.1 - 42.8 (7.6)"   "0.1 - 143.4 (21.4)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D31V2, continuous
D31V3, binary
                    cls
clus                  0  1
  18Q GAIN MUTATED    8  2
  18Q GAIN WILD-TYPE 20 27
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      8    2
  18Q GAIN WILD-TYPE   20   27
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  FEMALE                8                 20
  MALE                  2                 27

Clustering(32) Variable = 19P GAIN MUTATION ANALYSIS
D32V1, survival
                    sevent
clus2                 0  1
  19P GAIN MUTATED   11  8
  19P GAIN WILD-TYPE 28 10
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                19                 38 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 8                 10 
$`19P GAIN MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L1 
       14.04         2.04        27.19        12.85        18.51        46.68 
TCGA-DX-A1L2 TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A2J0 TCGA-DX-A3U7 TCGA-FX-A3RE 
       42.44        74.66         6.28         9.70        42.77         0.07 
TCGA-HB-A3YV TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IW-A3M5 TCGA-JV-A5VF 
        4.54         8.94         3.22         1.38         5.88         1.05 
TCGA-KF-A41W 
       11.70 

$`19P GAIN WILD-TYPE`
TCGA-DX-A1KZ TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V 
       24.49        31.56        29.85         5.23        76.37        66.87 
TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS 
       27.78        60.30         8.55        53.26        43.04         9.01 
TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 
       23.08        70.49       108.10        17.10        20.02        15.02 
TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A48G TCGA-HB-A2OT 
       17.75         4.50         0.46         0.10         0.07        26.89 
TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 
        4.14        12.62        21.37        25.22        31.76        28.21 
TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-JV-A5VE 
      143.41       116.88        13.58        73.28        22.62         6.25 
TCGA-MO-A47R TCGA-PC-A5DK 
        0.10        75.48 

  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              0.07               0.07 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
             74.66             143.41 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
             9.700             23.785 
[1] "0.1 - 74.7 (9.7)"   "0.1 - 143.4 (23.8)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
[1] "hr=" "2.8"
D32V2, continuous
D32V3, binary
                    cls
clus                  0  1
  19P GAIN MUTATED    8 11
  19P GAIN WILD-TYPE 20 18
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      8   11
  19P GAIN WILD-TYPE   20   18
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  FEMALE                8                 20
  MALE                 11                 18

Clustering(33) Variable = 19Q GAIN MUTATION ANALYSIS
D33V1, survival
                    sevent
clus2                 0  1
  19Q GAIN MUTATED    9  4
  19Q GAIN WILD-TYPE 30 14
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                13                 44 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 4                 14 
$`19Q GAIN MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L1 TCGA-DX-A1L2 
       14.04         2.04        27.19        12.85        46.68        42.44 
TCGA-DX-A23R TCGA-DX-A23Y TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-JV-A5VF 
       74.66         6.28         8.94         3.22         1.38         1.05 
TCGA-KF-A41W 
       11.70 

$`19Q GAIN WILD-TYPE`
TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U 
       24.49        18.51        31.56        29.85         5.23        76.37 
TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 
       66.87        27.78        60.30         8.55         9.70        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY 
       43.04         9.01        23.08        70.49       108.10        17.10 
TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS 
       20.02        15.02        17.75        42.77         4.50         0.46 
TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z 
        0.10         0.07         0.07        26.89         4.54         4.14 
TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 
       12.62        21.37        25.22        31.76        28.21       143.41 
TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE 
      116.88        13.58        73.28         5.88        22.62         6.25 
TCGA-MO-A47R TCGA-PC-A5DK 
        0.10        75.48 

  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
              1.05               0.07 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
             74.66             143.41 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
            11.700             21.995 
[1] "1.1 - 74.7 (11.7)"  "0.1 - 143.4 (22.0)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D33V2, continuous
D33V3, binary
                    cls
clus                  0  1
  19Q GAIN MUTATED    6  7
  19Q GAIN WILD-TYPE 22 22
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      6    7
  19Q GAIN WILD-TYPE   22   22
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  FEMALE                6                 22
  MALE                  7                 22

Clustering(34) Variable = 20P GAIN MUTATION ANALYSIS
D34V1, survival
                    sevent
clus2                 0  1
  20P GAIN MUTATED   10  7
  20P GAIN WILD-TYPE 29 11
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                17                 40 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                 7                 11 
$`20P GAIN MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A23R 
       14.04         2.04        27.19        18.51        46.68        74.66 
TCGA-DX-A23Y TCGA-DX-A3U7 TCGA-FX-A3NJ TCGA-FX-A48G TCGA-HB-A5W3 TCGA-IE-A4EI 
        6.28        42.77         0.10         0.07        12.62         8.94 
TCGA-IE-A4EJ TCGA-IF-A4AJ TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-KF-A41W 
        3.22        25.22        13.58         5.88        11.70 

$`20P GAIN WILD-TYPE`
TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T 
       12.85        24.49        42.44        31.56        29.85         5.23 
TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 
       76.37        66.87        27.78        60.30         8.55         9.70 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW 
       53.26        43.04         9.01        23.08        70.49       108.10 
TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A2QS 
       17.10        20.02        15.02        17.75         4.50         0.46 
TCGA-FX-A3RE TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z TCGA-IE-A4EH TCGA-IE-A4EK 
        0.07        26.89         4.54         4.14        21.37         1.38 
TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IW-A3M4 TCGA-IW-A3M6 
       31.76        28.21       143.41       116.88        73.28        22.62 
TCGA-JV-A5VE TCGA-JV-A5VF TCGA-MO-A47R TCGA-PC-A5DK 
        6.25         1.05         0.10        75.48 

  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              0.07               0.07 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
             74.66             143.41 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
             12.62              22.85 
[1] "0.1 - 74.7 (12.6)"  "0.1 - 143.4 (22.9)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
[1] "hr=" "2.3"
D34V2, continuous
D34V3, binary
                    cls
clus                  0  1
  20P GAIN MUTATED    9  8
  20P GAIN WILD-TYPE 19 21
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED      9    8
  20P GAIN WILD-TYPE   19   21
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  FEMALE                9                 19
  MALE                  8                 21

Clustering(35) Variable = 20Q GAIN MUTATION ANALYSIS
D35V1, survival
                    sevent
clus2                 0  1
  20Q GAIN MUTATED   12  8
  20Q GAIN WILD-TYPE 27 10
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                20                 37 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                 8                 10 
$`20Q GAIN MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L1 
       14.04         2.04        27.19        12.85        18.51        46.68 
TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A3LW TCGA-DX-A3U7 TCGA-FX-A3NJ TCGA-FX-A48G 
       74.66         6.28       108.10        42.77         0.10         0.07 
TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IS-A3K7 TCGA-IS-A3KA 
        4.54        12.62         8.94         3.22       143.41        13.58 
TCGA-IW-A3M5 TCGA-KF-A41W 
        5.88        11.70 

$`20Q GAIN WILD-TYPE`
TCGA-DX-A1KZ TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U 
       24.49        42.44        31.56        29.85         5.23        76.37 
TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 
       66.87        27.78        60.30         8.55         9.70        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LY TCGA-DX-A3M1 
       43.04         9.01        23.08        70.49        17.10        20.02 
TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3RE TCGA-HB-A2OT 
       15.02        17.75         4.50         0.46         0.07        26.89 
TCGA-HB-A43Z TCGA-IE-A4EH TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 
        4.14        21.37         1.38        25.22        31.76        28.21 
TCGA-IS-A3K8 TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-MO-A47R 
      116.88        73.28        22.62         6.25         1.05         0.10 
TCGA-PC-A5DK 
       75.48 

  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
              0.07               0.07 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
            143.41             116.88 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
            12.735             23.080 
[1] "0.1 - 143.4 (12.7)" "0.1 - 116.9 (23.1)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
[1] "hr=" "1.8"
D35V2, continuous
D35V3, binary
                    cls
clus                  0  1
  20Q GAIN MUTATED   10 10
  20Q GAIN WILD-TYPE 18 19
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     10   10
  20Q GAIN WILD-TYPE   18   19
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  FEMALE               10                 18
  MALE                 10                 19

Clustering(36) Variable = 21Q GAIN MUTATION ANALYSIS
D36V1, survival
                    sevent
clus2                 0  1
  21Q GAIN MUTATED    5  6
  21Q GAIN WILD-TYPE 34 12
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                11                 46 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 6                 12 
$`21Q GAIN MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1L1 TCGA-DX-A2IZ TCGA-DX-A3LW TCGA-HB-A3YV 
        2.04        12.85        46.68         8.55       108.10         4.54 
TCGA-IE-A4EJ TCGA-IF-A4AJ TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-JV-A5VF 
        3.22        25.22        13.58         5.88         1.05 

$`21Q GAIN WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L2 TCGA-DX-A1L3 
       14.04        27.19        24.49        18.51        42.44        31.56 
TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y 
       29.85        74.66         5.23        76.37        66.87         6.28 
TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS 
       27.78        60.30         9.70        53.26        43.04         9.01 
TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 
       23.08        70.49        17.10        20.02        15.02        17.75 
TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G 
       42.77         4.50         0.46         0.10         0.07         0.07 
TCGA-HB-A2OT TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EK 
       26.89         4.14        12.62        21.37         8.94         1.38 
TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IW-A3M4 TCGA-IW-A3M6 
       31.76        28.21       143.41       116.88        73.28        22.62 
TCGA-JV-A5VE TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
        6.25        11.70         0.10        75.48 

  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
              1.05               0.07 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
            108.10             143.41 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
             8.550             21.995 
[1] "1.1 - 108.1 (8.6)"  "0.1 - 143.4 (22.0)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
[1] "hr=" "3.1"
D36V2, continuous
D36V3, binary
                    cls
clus                  0  1
  21Q GAIN MUTATED    4  7
  21Q GAIN WILD-TYPE 24 22
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      4    7
  21Q GAIN WILD-TYPE   24   22
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  FEMALE                4                 24
  MALE                  7                 22

Clustering(37) Variable = 22Q GAIN MUTATION ANALYSIS
D37V1, survival
                    sevent
clus2                 0  1
  22Q GAIN MUTATED    6  3
  22Q GAIN WILD-TYPE 33 15
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 9                 48 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 3                 15 
$`22Q GAIN MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1KY TCGA-HB-A2OT TCGA-HB-A43Z TCGA-HB-A5W3 
       14.04        27.19        12.85        26.89         4.14        12.62 
TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-JV-A5VE 
        8.94         3.22         6.25 

$`22Q GAIN WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 
        2.04        24.49        18.51        46.68        42.44        31.56 
TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y 
       29.85        74.66         5.23        76.37        66.87         6.28 
TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 
       27.78        60.30         8.55         9.70        53.26        43.04 
TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 
        9.01        23.08        70.49       108.10        17.10        20.02 
TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ 
       15.02        17.75        42.77         4.50         0.46         0.10 
TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A3YV TCGA-IE-A4EH TCGA-IE-A4EK TCGA-IF-A4AJ 
        0.07         0.07         4.54        21.37         1.38        25.22 
TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 
       31.76        28.21       143.41       116.88        13.58        73.28 
TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VF TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
        5.88        22.62         1.05        11.70         0.10        75.48 

  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
              3.22               0.07 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
             27.19             143.41 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
            12.620             21.995 
[1] "3.2 - 27.2 (12.6)"  "0.1 - 143.4 (22.0)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
[1] "hr=" "1.9"
D37V2, continuous
D37V3, binary
                    cls
clus                  0  1
  22Q GAIN MUTATED    7  2
  22Q GAIN WILD-TYPE 21 27
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      7    2
  22Q GAIN WILD-TYPE   21   27
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  FEMALE                7                 21
  MALE                  2                 27

Clustering(38) Variable = XQ GAIN MUTATION ANALYSIS
D38V1, survival
                   sevent
clus2                0  1
  XQ GAIN MUTATED    5  2
  XQ GAIN WILD-TYPE 34 16
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                7                50 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                2                16 
$`XQ GAIN MUTATED`
TCGA-DX-A1KZ TCGA-DX-A23Y TCGA-DX-A240 TCGA-DX-A3LW TCGA-HB-A2OT TCGA-IE-A4EI 
       24.49         6.28        60.30       108.10        26.89         8.94 
TCGA-IS-A3KA 
       13.58 

$`XQ GAIN WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L1 
       14.04         2.04        27.19        12.85        18.51        46.68 
TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U 
       42.44        31.56        29.85        74.66         5.23        76.37 
TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 
       66.87        27.78         8.55         9.70        53.26        43.04 
TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 
        9.01        23.08        70.49        17.10        20.02        15.02 
TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE 
       17.75        42.77         4.50         0.46         0.10         0.07 
TCGA-FX-A48G TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EJ 
        0.07         4.54         4.14        12.62        21.37         3.22 
TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 
        1.38        25.22        31.76        28.21       143.41       116.88 
TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W 
       73.28         5.88        22.62         6.25         1.05        11.70 
TCGA-MO-A47R TCGA-PC-A5DK 
        0.10        75.48 

  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
             6.28              0.07 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
           108.10            143.41 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
            24.49             18.13 
[1] "6.3 - 108.1 (24.5)" "0.1 - 143.4 (18.1)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"XQ GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"XQ GAIN WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-PC-A5DK 
"XQ GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D38V2, continuous
D38V3, binary
                   cls
clus                 0  1
  XQ GAIN MUTATED    3  4
  XQ GAIN WILD-TYPE 25 25
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      3    4
  XQ GAIN WILD-TYPE   25   25
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  FEMALE               3                25
  MALE                 4                25

Clustering(39) Variable = 1P LOSS MUTATION ANALYSIS
D39V1, survival
                   sevent
clus2                0  1
  1P LOSS MUTATED    9  1
  1P LOSS WILD-TYPE 30 17
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               10                47 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                1                17 
$`1P LOSS MUTATED`
TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-FX-A3RE TCGA-FX-A48G TCGA-IS-A3K7 
       27.19        24.49        18.51         0.07         0.07       143.41 
TCGA-IS-A3K8 TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-MO-A47R 
      116.88        73.28        22.62         0.10 

$`1P LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 
       14.04         2.04        12.85        46.68        42.44        31.56 
TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y 
       29.85        74.66         5.23        76.37        66.87         6.28 
TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 
       27.78        60.30         8.55         9.70        53.26        43.04 
TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 
        9.01        23.08        70.49       108.10        17.10        20.02 
TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ 
       15.02        17.75        42.77         4.50         0.46         0.10 
TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI 
       26.89         4.54         4.14        12.62        21.37         8.94 
TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3KA 
        3.22         1.38        25.22        31.76        28.21        13.58 
TCGA-IW-A3M5 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W TCGA-PC-A5DK 
        5.88         6.25         1.05        11.70        75.48 

  1P LOSS MUTATED 1P LOSS WILD-TYPE 
             0.07              0.10 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
           143.41            108.10 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
           23.555            17.100 
[1] "0.1 - 143.4 (23.6)" "0.1 - 108.1 (17.1)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-PC-A5DK 
"1P LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-PC-A5DK 
"1P LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-PC-A5DK 
"1P LOSS WILD-TYPE" 
[1] "hr=" "4.6"
D39V2, continuous
D39V3, binary
                   cls
clus                 0  1
  1P LOSS MUTATED    8  2
  1P LOSS WILD-TYPE 20 27
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      8    2
  1P LOSS WILD-TYPE   20   27
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  FEMALE               8                20
  MALE                 2                27

Clustering(40) Variable = 1Q LOSS MUTATION ANALYSIS
D40V1, survival
                   sevent
clus2                0  1
  1Q LOSS MUTATED    6  4
  1Q LOSS WILD-TYPE 33 14
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               10                47 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                4                14 
$`1Q LOSS MUTATED`
TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A2J0 TCGA-FX-A2QS TCGA-FX-A48G 
       27.19        24.49        18.51         9.70         0.46         0.07 
TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IS-A3K7 TCGA-IS-A3K8 
        4.54        12.62       143.41       116.88 

$`1Q LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 
       14.04         2.04        12.85        46.68        42.44        31.56 
TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y 
       29.85        74.66         5.23        76.37        66.87         6.28 
TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS 
       27.78        60.30         8.55        53.26        43.04         9.01 
TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 
       23.08        70.49       108.10        17.10        20.02        15.02 
TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-HB-A2OT 
       17.75        42.77         4.50         0.10         0.07        26.89 
TCGA-HB-A43Z TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ 
        4.14        21.37         8.94         3.22         1.38        25.22 
TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 
       31.76        28.21        13.58        73.28         5.88        22.62 
TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
        6.25         1.05        11.70         0.10        75.48 

  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
             0.07              0.07 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
           143.41            108.10 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
           15.565            20.020 
[1] "0.1 - 143.4 (15.6)" "0.1 - 108.1 (20.0)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"1Q LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"1Q LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"1Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D40V2, continuous
D40V3, binary
                   cls
clus                 0  1
  1Q LOSS MUTATED    6  4
  1Q LOSS WILD-TYPE 22 25
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      6    4
  1Q LOSS WILD-TYPE   22   25
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  FEMALE               6                22
  MALE                 4                25

Clustering(41) Variable = 2P LOSS MUTATION ANALYSIS
D41V1, survival
                   sevent
clus2                0  1
  2P LOSS MUTATED    7  3
  2P LOSS WILD-TYPE 32 15
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               10                47 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                3                15 
$`2P LOSS MUTATED`
TCGA-DX-A1L0 TCGA-DX-A1L2 TCGA-DX-A3M1 TCGA-DX-A3U7 TCGA-HB-A2OT TCGA-HB-A5W3 
       18.51        42.44        20.02        42.77        26.89        12.62 
TCGA-IE-A4EJ TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-JV-A5VE 
        3.22        25.22        31.76         6.25 

$`2P LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 
       14.04         2.04        27.19        12.85        24.49        46.68 
TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V 
       31.56        29.85        74.66         5.23        76.37        66.87 
TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 
        6.28        27.78        60.30         8.55         9.70        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY 
       43.04         9.01        23.08        70.49       108.10        17.10 
TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE 
       15.02        17.75         4.50         0.46         0.10         0.07 
TCGA-FX-A48G TCGA-HB-A3YV TCGA-HB-A43Z TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EK 
        0.07         4.54         4.14        21.37         8.94         1.38 
TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 
       28.21       143.41       116.88        13.58        73.28         5.88 
TCGA-IW-A3M6 TCGA-JV-A5VF TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
       22.62         1.05        11.70         0.10        75.48 

  2P LOSS MUTATED 2P LOSS WILD-TYPE 
             3.22              0.07 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
            42.77            143.41 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
            22.62             17.10 
[1] "3.2 - 42.8 (22.6)"  "0.1 - 143.4 (17.1)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"2P LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"2P LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"2P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D41V2, continuous
D41V3, binary
                   cls
clus                 0  1
  2P LOSS MUTATED    5  5
  2P LOSS WILD-TYPE 23 24
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      5    5
  2P LOSS WILD-TYPE   23   24
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  FEMALE               5                23
  MALE                 5                24

Clustering(42) Variable = 2Q LOSS MUTATION ANALYSIS
D42V1, survival
                   sevent
clus2                0  1
  2Q LOSS MUTATED    7  5
  2Q LOSS WILD-TYPE 32 13
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               12                45 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                5                13 
$`2Q LOSS MUTATED`
TCGA-DX-A1L0 TCGA-DX-A1L2 TCGA-DX-A23Y TCGA-DX-A3M1 TCGA-DX-A3U7 TCGA-HB-A2OT 
       18.51        42.44         6.28        20.02        42.77        26.89 
TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IE-A4EJ TCGA-IF-A4AK TCGA-JV-A5VE TCGA-JV-A5VF 
        4.54        12.62         3.22        31.76         6.25         1.05 

$`2Q LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 
       14.04         2.04        27.19        12.85        24.49        46.68 
TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V 
       31.56        29.85        74.66         5.23        76.37        66.87 
TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 
       27.78        60.30         8.55         9.70        53.26        43.04 
TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3U5 
        9.01        23.08        70.49       108.10        17.10        15.02 
TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G 
       17.75         4.50         0.46         0.10         0.07         0.07 
TCGA-HB-A43Z TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IS-A3K6 
        4.14        21.37         8.94         1.38        25.22        28.21 
TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 
      143.41       116.88        13.58        73.28         5.88        22.62 
TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
       11.70         0.10        75.48 

  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
             1.05              0.07 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
            42.77            143.41 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
           15.565            21.370 
[1] "1.1 - 42.8 (15.6)"  "0.1 - 143.4 (21.4)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
  "2Q LOSS MUTATED"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"2Q LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
  "2Q LOSS MUTATED"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"2Q LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
  "2Q LOSS MUTATED"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"2Q LOSS WILD-TYPE" 
[1] "hr=" "1.9"
D42V2, continuous
D42V3, binary
                   cls
clus                 0  1
  2Q LOSS MUTATED    6  6
  2Q LOSS WILD-TYPE 22 23
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      6    6
  2Q LOSS WILD-TYPE   22   23
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  FEMALE               6                22
  MALE                 6                23

Clustering(43) Variable = 3P LOSS MUTATION ANALYSIS
D43V1, survival
                   sevent
clus2                0  1
  3P LOSS MUTATED    8  4
  3P LOSS WILD-TYPE 31 14
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               12                45 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
                4                14 
$`3P LOSS MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-DX-A23R TCGA-DX-A3LS TCGA-DX-A3LT 
        2.04        27.19        18.51        74.66         9.01        23.08 
TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-HB-A3YV TCGA-HB-A43Z TCGA-IE-A4EJ TCGA-JV-A5VF 
       17.10        20.02         4.54         4.14         3.22         1.05 

$`3P LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 
       14.04        12.85        24.49        46.68        42.44        31.56 
TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z 
       29.85         5.23        76.37        66.87         6.28        27.78 
TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LU 
       60.30         8.55         9.70        53.26        43.04        70.49 
TCGA-DX-A3LW TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS 
      108.10        15.02        17.75        42.77         4.50         0.46 
TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A5W3 TCGA-IE-A4EH 
        0.10         0.07         0.07        26.89        12.62        21.37 
TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 
        8.94         1.38        25.22        31.76        28.21       143.41 
TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE 
      116.88        13.58        73.28         5.88        22.62         6.25 
TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
       11.70         0.10        75.48 

  3P LOSS MUTATED 3P LOSS WILD-TYPE 
             1.05              0.07 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
            74.66            143.41 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
           13.055            22.620 
[1] "1.1 - 74.7 (13.1)"  "0.1 - 143.4 (22.6)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"3P LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"3P LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"3P LOSS WILD-TYPE" 
[1] "hr=" "1.8"
D43V2, continuous
D43V3, binary
                   cls
clus                 0  1
  3P LOSS MUTATED    6  6
  3P LOSS WILD-TYPE 22 23
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED      6    6
  3P LOSS WILD-TYPE   22   23
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  FEMALE               6                22
  MALE                 6                23

Clustering(44) Variable = 3Q LOSS MUTATION ANALYSIS
D44V1, survival
                   sevent
clus2                0  1
  3Q LOSS MUTATED    9  3
  3Q LOSS WILD-TYPE 30 15
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               12                45 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                3                15 
$`3Q LOSS MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A23R TCGA-DX-A3LS 
        2.04        27.19        18.51        46.68        74.66         9.01 
TCGA-DX-A3LT TCGA-DX-A3M1 TCGA-HB-A3YV TCGA-HB-A43Z TCGA-IE-A4EJ TCGA-MO-A47R 
       23.08        20.02         4.54         4.14         3.22         0.10 

$`3Q LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 
       14.04        12.85        24.49        42.44        31.56        29.85 
TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 
        5.23        76.37        66.87         6.28        27.78        60.30 
TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LU TCGA-DX-A3LW 
        8.55         9.70        53.26        43.04        70.49       108.10 
TCGA-DX-A3LY TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS 
       17.10        15.02        17.75        42.77         4.50         0.46 
TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A5W3 TCGA-IE-A4EH 
        0.10         0.07         0.07        26.89        12.62        21.37 
TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 
        8.94         1.38        25.22        31.76        28.21       143.41 
TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE 
      116.88        13.58        73.28         5.88        22.62         6.25 
TCGA-JV-A5VF TCGA-KF-A41W TCGA-PC-A5DK 
        1.05        11.70        75.48 

  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
             0.10              0.07 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
            74.66            143.41 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
            13.76             21.37 
[1] "0.1 - 74.7 (13.8)"  "0.1 - 143.4 (21.4)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-PC-A5DK 
"3Q LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-PC-A5DK 
"3Q LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-PC-A5DK 
"3Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D44V2, continuous
D44V3, binary
                   cls
clus                 0  1
  3Q LOSS MUTATED    6  6
  3Q LOSS WILD-TYPE 22 23
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      6    6
  3Q LOSS WILD-TYPE   22   23
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  FEMALE               6                22
  MALE                 6                23

Clustering(45) Variable = 4P LOSS MUTATION ANALYSIS
D45V1, survival
                   sevent
clus2                0  1
  4P LOSS MUTATED    8  3
  4P LOSS WILD-TYPE 31 15
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               11                46 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
                3                15 
$`4P LOSS MUTATED`
TCGA-DX-A2IZ TCGA-DX-A3LT TCGA-DX-A3U7 TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EK 
        8.55        23.08        42.77         4.14        12.62         1.38 
TCGA-IF-A4AK TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VF TCGA-MO-A47R 
       31.76         5.88        22.62         1.05         0.10 

$`4P LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 
       14.04         2.04        27.19        12.85        24.49        18.51 
TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T 
       46.68        42.44        31.56        29.85        74.66         5.23 
TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2J0 
       76.37        66.87         6.28        27.78        60.30         9.70 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY 
       53.26        43.04         9.01        70.49       108.10        17.10 
TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ 
       20.02        15.02        17.75         4.50         0.46         0.10 
TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-IE-A4EH TCGA-IE-A4EI 
        0.07         0.07        26.89         4.54        21.37         8.94 
TCGA-IE-A4EJ TCGA-IF-A4AJ TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA 
        3.22        25.22        28.21       143.41       116.88        13.58 
TCGA-IW-A3M4 TCGA-JV-A5VE TCGA-KF-A41W TCGA-PC-A5DK 
       73.28         6.25        11.70        75.48 

  4P LOSS MUTATED 4P LOSS WILD-TYPE 
             0.10              0.07 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
            42.77            143.41 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
            8.550            20.695 
[1] "0.1 - 42.8 (8.6)"   "0.1 - 143.4 (20.7)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-PC-A5DK 
"4P LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-PC-A5DK 
"4P LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-PC-A5DK 
"4P LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D45V2, continuous
D45V3, binary
                   cls
clus                 0  1
  4P LOSS MUTATED    7  4
  4P LOSS WILD-TYPE 21 25
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED      7    4
  4P LOSS WILD-TYPE   21   25
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  FEMALE               7                21
  MALE                 4                25

Clustering(46) Variable = 4Q LOSS MUTATION ANALYSIS
D46V1, survival
                   sevent
clus2                0  1
  4Q LOSS MUTATED   12  2
  4Q LOSS WILD-TYPE 27 16
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               14                43 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
                2                16 
$`4Q LOSS MUTATED`
TCGA-DX-A23R TCGA-DX-A2IZ TCGA-DX-A3LT TCGA-DX-A3U7 TCGA-HB-A43Z TCGA-IE-A4EH 
       74.66         8.55        23.08        42.77         4.14        21.37 
TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AK TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VF 
        3.22         1.38        31.76         5.88        22.62         1.05 
TCGA-KF-A41W TCGA-MO-A47R 
       11.70         0.10 

$`4Q LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 
       14.04         2.04        27.19        12.85        24.49        18.51 
TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U 
       46.68        42.44        31.56        29.85         5.23        76.37 
TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2J0 TCGA-DX-A2J1 
       66.87         6.28        27.78        60.30         9.70        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 
       43.04         9.01        70.49       108.10        17.10        20.02 
TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE 
       15.02        17.75         4.50         0.46         0.10         0.07 
TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IE-A4EI TCGA-IF-A4AJ 
        0.07        26.89         4.54        12.62         8.94        25.22 
TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-JV-A5VE 
       28.21       143.41       116.88        13.58        73.28         6.25 
TCGA-PC-A5DK 
       75.48 

  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
             0.10              0.07 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
            74.66            143.41 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
           10.125            20.020 
[1] "0.1 - 74.7 (10.1)"  "0.1 - 143.4 (20.0)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-PC-A5DK 
"4Q LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-PC-A5DK 
"4Q LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-PC-A5DK 
"4Q LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D46V2, continuous
D46V3, binary
                   cls
clus                 0  1
  4Q LOSS MUTATED   10  4
  4Q LOSS WILD-TYPE 18 25
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     10    4
  4Q LOSS WILD-TYPE   18   25
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  FEMALE              10                18
  MALE                 4                25

Clustering(47) Variable = 5P LOSS MUTATION ANALYSIS
D47V1, survival
                   sevent
clus2                0  1
  5P LOSS MUTATED    7  0
  5P LOSS WILD-TYPE 32 18
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                7                50 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                0                18 
$`5P LOSS MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KZ TCGA-DX-A23R TCGA-DX-A3LT TCGA-DX-A3M1 TCGA-IS-A3K7 
        2.04        24.49        74.66        23.08        20.02       143.41 
TCGA-KF-A41W 
       11.70 

$`5P LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 
       14.04        27.19        12.85        18.51        46.68        42.44 
TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y 
       31.56        29.85         5.23        76.37        66.87         6.28 
TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 
       27.78        60.30         8.55         9.70        53.26        43.04 
TCGA-DX-A3LS TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3U5 TCGA-DX-A3U6 
        9.01        70.49       108.10        17.10        15.02        17.75 
TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G 
       42.77         4.50         0.46         0.10         0.07         0.07 
TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI 
       26.89         4.54         4.14        12.62        21.37         8.94 
TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K8 
        3.22         1.38        25.22        31.76        28.21       116.88 
TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF 
       13.58        73.28         5.88        22.62         6.25         1.05 
TCGA-MO-A47R TCGA-PC-A5DK 
        0.10        75.48 

  5P LOSS MUTATED 5P LOSS WILD-TYPE 
             2.04              0.07 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
           143.41            116.88 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
           23.080            17.425 
[1] "2.0 - 143.4 (23.1)" "0.1 - 116.9 (17.4)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"5P LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"5P LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"5P LOSS WILD-TYPE" 
[1] "hr="     "2.3e+08"
D47V2, continuous
D47V3, binary
                   cls
clus                 0  1
  5P LOSS MUTATED    3  4
  5P LOSS WILD-TYPE 25 25
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      3    4
  5P LOSS WILD-TYPE   25   25
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  FEMALE               3                25
  MALE                 4                25

Clustering(48) Variable = 5Q LOSS MUTATION ANALYSIS
D48V1, survival
                   sevent
clus2                0  1
  5Q LOSS MUTATED    9  1
  5Q LOSS WILD-TYPE 30 17
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               10                47 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                1                17 
$`5Q LOSS MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KZ TCGA-DX-A23R TCGA-DX-A3LT TCGA-DX-A3M1 TCGA-FX-A2QS 
        2.04        24.49        74.66        23.08        20.02         0.46 
TCGA-HB-A2OT TCGA-IE-A4EH TCGA-IF-A4AJ TCGA-KF-A41W 
       26.89        21.37        25.22        11.70 

$`5Q LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 
       14.04        27.19        12.85        18.51        46.68        42.44 
TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y 
       31.56        29.85         5.23        76.37        66.87         6.28 
TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 
       27.78        60.30         8.55         9.70        53.26        43.04 
TCGA-DX-A3LS TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3U5 TCGA-DX-A3U6 
        9.01        70.49       108.10        17.10        15.02        17.75 
TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A3YV 
       42.77         4.50         0.10         0.07         0.07         4.54 
TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AK 
        4.14        12.62         8.94         3.22         1.38        31.76 
TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 
       28.21       143.41       116.88        13.58        73.28         5.88 
TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-MO-A47R TCGA-PC-A5DK 
       22.62         6.25         1.05         0.10        75.48 

  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
             0.46              0.07 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
            74.66            143.41 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
           22.225            17.100 
[1] "0.5 - 74.7 (22.2)"  "0.1 - 143.4 (17.1)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"5Q LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"5Q LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"5Q LOSS WILD-TYPE" 
[1] "hr=" "3.3"
D48V2, continuous
D48V3, binary
                   cls
clus                 0  1
  5Q LOSS MUTATED    5  5
  5Q LOSS WILD-TYPE 23 24
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED      5    5
  5Q LOSS WILD-TYPE   23   24
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  FEMALE               5                23
  MALE                 5                24

Clustering(49) Variable = 6P LOSS MUTATION ANALYSIS
D49V1, survival
                   sevent
clus2                0  1
  6P LOSS MUTATED    9  1
  6P LOSS WILD-TYPE 30 17
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               10                47 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
                1                17 
$`6P LOSS MUTATED`
TCGA-DX-A1KZ TCGA-DX-A23R TCGA-DX-A3LT TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-FX-A48G 
       24.49        74.66        23.08        17.10        20.02         0.07 
TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IF-A4AK TCGA-IW-A3M6 
        4.14        12.62        31.76        22.62 

$`6P LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L1 
       14.04         2.04        27.19        12.85        18.51        46.68 
TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V 
       42.44        31.56        29.85         5.23        76.37        66.87 
TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 
        6.28        27.78        60.30         8.55         9.70        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3U5 TCGA-DX-A3U6 
       43.04         9.01        70.49       108.10        15.02        17.75 
TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-HB-A2OT 
       42.77         4.50         0.46         0.10         0.07        26.89 
TCGA-HB-A3YV TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ 
        4.54        21.37         8.94         3.22         1.38        25.22 
TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 
       28.21       143.41       116.88        13.58        73.28         5.88 
TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
        6.25         1.05        11.70         0.10        75.48 

  6P LOSS MUTATED 6P LOSS WILD-TYPE 
             0.07              0.07 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
            74.66            143.41 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
            21.32             17.75 
[1] "0.1 - 74.7 (21.3)"  "0.1 - 143.4 (17.8)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"6P LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"6P LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"6P LOSS WILD-TYPE" 
[1] "hr=" "3.4"
D49V2, continuous
D49V3, binary
                   cls
clus                 0  1
  6P LOSS MUTATED    6  4
  6P LOSS WILD-TYPE 22 25
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      6    4
  6P LOSS WILD-TYPE   22   25
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  FEMALE               6                22
  MALE                 4                25

Clustering(50) Variable = 6Q LOSS MUTATION ANALYSIS
D50V1, survival
                   sevent
clus2                0  1
  6Q LOSS MUTATED    5  0
  6Q LOSS WILD-TYPE 34 18
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
                5                52 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
                0                18 
$`6Q LOSS MUTATED`
TCGA-DX-A23R TCGA-DX-A3U7 TCGA-FX-A48G TCGA-HB-A43Z TCGA-IF-A4AK 
       74.66        42.77         0.07         4.14        31.76 

$`6Q LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 
       14.04         2.04        27.19        12.85        24.49        18.51 
TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U 
       46.68        42.44        31.56        29.85         5.23        76.37 
TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 
       66.87         6.28        27.78        60.30         8.55         9.70 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW 
       53.26        43.04         9.01        23.08        70.49       108.10 
TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A2QS 
       17.10        20.02        15.02        17.75         4.50         0.46 
TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IE-A4EH 
        0.10         0.07        26.89         4.54        12.62        21.37 
TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IS-A3K6 TCGA-IS-A3K7 
        8.94         3.22         1.38        25.22        28.21       143.41 
TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE 
      116.88        13.58        73.28         5.88        22.62         6.25 
TCGA-JV-A5VF TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
        1.05        11.70         0.10        75.48 

  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
             0.07              0.07 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
            74.66            143.41 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
            31.76             18.13 
[1] "0.1 - 74.7 (31.8)"  "0.1 - 143.4 (18.1)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"6Q LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"6Q LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"6Q LOSS WILD-TYPE" 
[1] "hr="     "7.8e+07"
D50V2, continuous
D50V3, binary
                   cls
clus                 0  1
  6Q LOSS MUTATED    4  1
  6Q LOSS WILD-TYPE 24 28
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED      4    1
  6Q LOSS WILD-TYPE   24   28
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  FEMALE               4                24
  MALE                 1                28

Clustering(51) Variable = 7P LOSS MUTATION ANALYSIS
D51V1, survival
                   sevent
clus2                0  1
  7P LOSS MUTATED    4  0
  7P LOSS WILD-TYPE 35 18
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                4                53 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                0                18 
$`7P LOSS MUTATED`
TCGA-DX-A3LY TCGA-DX-A3U7 TCGA-IW-A3M6 TCGA-KF-A41W 
       17.10        42.77        22.62        11.70 

$`7P LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 
       14.04         2.04        27.19        12.85        24.49        18.51 
TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T 
       46.68        42.44        31.56        29.85        74.66         5.23 
TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ 
       76.37        66.87         6.28        27.78        60.30         8.55 
TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU 
        9.70        53.26        43.04         9.01        23.08        70.49 
TCGA-DX-A3LW TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A2QS 
      108.10        20.02        15.02        17.75         4.50         0.46 
TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z 
        0.10         0.07         0.07        26.89         4.54         4.14 
TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ 
       12.62        21.37         8.94         3.22         1.38        25.22 
TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 
       31.76        28.21       143.41       116.88        13.58        73.28 
TCGA-IW-A3M5 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-MO-A47R TCGA-PC-A5DK 
        5.88         6.25         1.05         0.10        75.48 

  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            11.70              0.07 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            42.77            143.41 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            19.86             18.51 
[1] "11.7 - 42.8 (19.9)" "0.1 - 143.4 (18.5)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"7P LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"7P LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"7P LOSS WILD-TYPE" 
[1] "hr="     "7.6e+07"
D51V2, continuous
D51V3, binary
                   cls
clus                 0  1
  7P LOSS MUTATED    2  2
  7P LOSS WILD-TYPE 26 27
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      2    2
  7P LOSS WILD-TYPE   26   27
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  FEMALE               2                26
  MALE                 2                27

Clustering(52) Variable = 7Q LOSS MUTATION ANALYSIS
D52V1, survival
                   sevent
clus2                0  1
  7Q LOSS MUTATED    2  2
  7Q LOSS WILD-TYPE 37 16
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                4                53 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                2                16 
$`7Q LOSS MUTATED`
TCGA-DX-A3LY TCGA-DX-A3U7 TCGA-IF-A4AJ TCGA-IW-A3M5 
       17.10        42.77        25.22         5.88 

$`7Q LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 
       14.04         2.04        27.19        12.85        24.49        18.51 
TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T 
       46.68        42.44        31.56        29.85        74.66         5.23 
TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ 
       76.37        66.87         6.28        27.78        60.30         8.55 
TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU 
        9.70        53.26        43.04         9.01        23.08        70.49 
TCGA-DX-A3LW TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A2QS 
      108.10        20.02        15.02        17.75         4.50         0.46 
TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z 
        0.10         0.07         0.07        26.89         4.54         4.14 
TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AK 
       12.62        21.37         8.94         3.22         1.38        31.76 
TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M6 
       28.21       143.41       116.88        13.58        73.28        22.62 
TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
        6.25         1.05        11.70         0.10        75.48 

  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
             5.88              0.07 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
            42.77            143.41 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
            21.16             18.51 
[1] "5.9 - 42.8 (21.2)"  "0.1 - 143.4 (18.5)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"7Q LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"7Q LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"7Q LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D52V2, continuous
D52V3, binary
                   cls
clus                 0  1
  7Q LOSS MUTATED    1  3
  7Q LOSS WILD-TYPE 27 26
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      1    3
  7Q LOSS WILD-TYPE   27   26
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  FEMALE               1                27
  MALE                 3                26

Clustering(53) Variable = 8P LOSS MUTATION ANALYSIS
D53V1, survival
                   sevent
clus2                0  1
  8P LOSS MUTATED   11  2
  8P LOSS WILD-TYPE 28 16
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               13                44 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
                2                16 
$`8P LOSS MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L2 TCGA-DX-A23Y TCGA-DX-A3LS 
        2.04        27.19        24.49        42.44         6.28         9.01 
TCGA-DX-A3U7 TCGA-FX-A2QS TCGA-FX-A3RE TCGA-HB-A43Z TCGA-IS-A3K7 TCGA-JV-A5VE 
       42.77         0.46         0.07         4.14       143.41         6.25 
TCGA-KF-A41W 
       11.70 

$`8P LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A1L4 
       14.04        12.85        18.51        46.68        31.56        29.85 
TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 
       74.66         5.23        76.37        66.87        27.78        60.30 
TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LT TCGA-DX-A3LU 
        8.55         9.70        53.26        43.04        23.08        70.49 
TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U8 
      108.10        17.10        20.02        15.02        17.75         4.50 
TCGA-FX-A3NJ TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IE-A4EH 
        0.10         0.07        26.89         4.54        12.62        21.37 
TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 
        8.94         3.22         1.38        25.22        31.76        28.21 
TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VF 
      116.88        13.58        73.28         5.88        22.62         1.05 
TCGA-MO-A47R TCGA-PC-A5DK 
        0.10        75.48 

  8P LOSS MUTATED 8P LOSS WILD-TYPE 
             0.07              0.07 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
           143.41            116.88 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
            9.010            20.695 
[1] "0.1 - 143.4 (9.0)"  "0.1 - 116.9 (20.7)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"8P LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"8P LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"8P LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D53V2, continuous
D53V3, binary
                   cls
clus                 0  1
  8P LOSS MUTATED    8  5
  8P LOSS WILD-TYPE 20 24
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED      8    5
  8P LOSS WILD-TYPE   20   24
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  FEMALE               8                20
  MALE                 5                24

Clustering(54) Variable = 8Q LOSS MUTATION ANALYSIS
D54V1, survival
                   sevent
clus2                0  1
  8Q LOSS MUTATED    9  2
  8Q LOSS WILD-TYPE 30 16
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               11                46 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                2                16 
$`8Q LOSS MUTATED`
TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L2 TCGA-DX-A23Y TCGA-DX-A3LS TCGA-DX-A3U7 
       27.19        24.49        42.44         6.28         9.01        42.77 
TCGA-HB-A43Z TCGA-IE-A4EJ TCGA-IS-A3K7 TCGA-JV-A5VE TCGA-KF-A41W 
        4.14         3.22       143.41         6.25        11.70 

$`8Q LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L3 
       14.04         2.04        12.85        18.51        46.68        31.56 
TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z 
       29.85        74.66         5.23        76.37        66.87        27.78 
TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LT 
       60.30         8.55         9.70        53.26        43.04        23.08 
TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 
       70.49       108.10        17.10        20.02        15.02        17.75 
TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT 
        4.50         0.46         0.10         0.07         0.07        26.89 
TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AJ 
        4.54        12.62        21.37         8.94         1.38        25.22 
TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 
       31.76        28.21       116.88        13.58        73.28         5.88 
TCGA-IW-A3M6 TCGA-JV-A5VF TCGA-MO-A47R TCGA-PC-A5DK 
       22.62         1.05         0.10        75.48 

  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
             3.22              0.07 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
           143.41            116.88 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
           11.700            19.265 
[1] "3.2 - 143.4 (11.7)" "0.1 - 116.9 (19.3)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"8Q LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"8Q LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"8Q LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D54V2, continuous
D54V3, binary
                   cls
clus                 0  1
  8Q LOSS MUTATED    7  4
  8Q LOSS WILD-TYPE 21 25
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      7    4
  8Q LOSS WILD-TYPE   21   25
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  FEMALE               7                21
  MALE                 4                25

Clustering(55) Variable = 9P LOSS MUTATION ANALYSIS
D55V1, survival
                   sevent
clus2                0  1
  9P LOSS MUTATED   11  6
  9P LOSS WILD-TYPE 28 12
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               17                40 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
                6                12 
$`9P LOSS MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KY TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A3LS TCGA-DX-A3LW 
       14.04        12.85        66.87         6.28         9.01       108.10 
TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-FX-A2QS TCGA-FX-A3RE TCGA-HB-A2OT TCGA-IE-A4EI 
       17.10        20.02         0.46         0.07        26.89         8.94 
TCGA-IE-A4EJ TCGA-IS-A3K7 TCGA-IW-A3M5 TCGA-MO-A47R TCGA-PC-A5DK 
        3.22       143.41         5.88         0.10        75.48 

$`9P LOSS WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 
        2.04        27.19        24.49        18.51        46.68        42.44 
TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23Z 
       31.56        29.85        74.66         5.23        76.37        27.78 
TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LT 
       60.30         8.55         9.70        53.26        43.04        23.08 
TCGA-DX-A3LU TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A3NJ 
       70.49        15.02        17.75        42.77         4.50         0.10 
TCGA-FX-A48G TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EK 
        0.07         4.54         4.14        12.62        21.37         1.38 
TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 
       25.22        31.76        28.21       116.88        13.58        73.28 
TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W 
       22.62         6.25         1.05        11.70 

  9P LOSS MUTATED 9P LOSS WILD-TYPE 
             0.07              0.07 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
           143.41            116.88 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
            12.85             22.85 
[1] "0.1 - 143.4 (12.8)" "0.1 - 116.9 (22.9)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-PC-A5DK 
  "9P LOSS MUTATED" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-PC-A5DK 
  "9P LOSS MUTATED" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-PC-A5DK 
  "9P LOSS MUTATED" 
[1] "hr=" "1.3"
D55V2, continuous
D55V3, binary
                   cls
clus                 0  1
  9P LOSS MUTATED   10  7
  9P LOSS WILD-TYPE 18 22
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     10    7
  9P LOSS WILD-TYPE   18   22
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  FEMALE              10                18
  MALE                 7                22

Clustering(56) Variable = 9Q LOSS MUTATION ANALYSIS
D56V1, survival
                   sevent
clus2                0  1
  9Q LOSS MUTATED    6  5
  9Q LOSS WILD-TYPE 33 13
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               11                46 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
                5                13 
$`9Q LOSS MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KY TCGA-DX-A3LS TCGA-DX-A3LW TCGA-HB-A2OT TCGA-IE-A4EJ 
       14.04        12.85         9.01       108.10        26.89         3.22 
TCGA-IS-A3K7 TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-MO-A47R TCGA-PC-A5DK 
      143.41        13.58         5.88         0.10        75.48 

$`9Q LOSS WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 
        2.04        27.19        24.49        18.51        46.68        42.44 
TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V 
       31.56        29.85        74.66         5.23        76.37        66.87 
TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 
        6.28        27.78        60.30         8.55         9.70        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 
       43.04        23.08        70.49        17.10        20.02        15.02 
TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE 
       17.75        42.77         4.50         0.46         0.10         0.07 
TCGA-FX-A48G TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI 
        0.07         4.54         4.14        12.62        21.37         8.94 
TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IW-A3M4 
        1.38        25.22        31.76        28.21       116.88        73.28 
TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W 
       22.62         6.25         1.05        11.70 

  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
             0.10              0.07 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
           143.41            116.88 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
           13.580            20.695 
[1] "0.1 - 143.4 (13.6)" "0.1 - 116.9 (20.7)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-PC-A5DK 
  "9Q LOSS MUTATED" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-PC-A5DK 
  "9Q LOSS MUTATED" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-PC-A5DK 
  "9Q LOSS MUTATED" 
[1] "hr=" "1.5"
D56V2, continuous
D56V3, binary
                   cls
clus                 0  1
  9Q LOSS MUTATED    7  4
  9Q LOSS WILD-TYPE 21 25
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED      7    4
  9Q LOSS WILD-TYPE   21   25
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  FEMALE               7                21
  MALE                 4                25

Clustering(57) Variable = 10P LOSS MUTATION ANALYSIS
D57V1, survival
                    sevent
clus2                 0  1
  10P LOSS MUTATED   17  6
  10P LOSS WILD-TYPE 22 12
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                23                 34 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                 6                 12 
$`10P LOSS MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-DX-A23R TCGA-DX-A23Y TCGA-FX-A2QS 
        2.04        27.19        18.51        74.66         6.28         0.46 
TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 
        0.07         0.07        26.89         4.54         4.14        12.62 
TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K7 TCGA-IW-A3M5 
        8.94         3.22        25.22        31.76       143.41         5.88 
TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
       22.62         6.25        11.70         0.10        75.48 

$`10P LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 
       14.04        12.85        24.49        46.68        42.44        31.56 
TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 
       29.85         5.23        76.37        66.87        27.78        60.30 
TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT 
        8.55         9.70        53.26        43.04         9.01        23.08 
TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 
       70.49       108.10        17.10        20.02        15.02        17.75 
TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A3NJ TCGA-IE-A4EH TCGA-IE-A4EK TCGA-IS-A3K6 
       42.77         4.50         0.10        21.37         1.38        28.21 
TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-JV-A5VF 
      116.88        13.58        73.28         1.05 

  10P LOSS MUTATED 10P LOSS WILD-TYPE 
              0.07               0.10 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
            143.41             116.88 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
             8.940             23.785 
[1] "0.1 - 143.4 (8.9)"  "0.1 - 116.9 (23.8)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
[1] "hr=" "1.2"
D57V2, continuous
D57V3, binary
                    cls
clus                  0  1
  10P LOSS MUTATED   17  6
  10P LOSS WILD-TYPE 11 23
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED     17    6
  10P LOSS WILD-TYPE   11   23
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  FEMALE               17                 11
  MALE                  6                 23

Clustering(58) Variable = 10Q LOSS MUTATION ANALYSIS
D58V1, survival
                    sevent
clus2                 0  1
  10Q LOSS MUTATED   17  8
  10Q LOSS WILD-TYPE 22 10
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                25                 32 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                 8                 10 
$`10Q LOSS MUTATED`
TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-DX-A23Y TCGA-DX-A3U7 TCGA-FX-A2QS TCGA-FX-A3NJ 
       27.19        18.51         6.28        42.77         0.46         0.10 
TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 
        0.07         0.07        26.89         4.54         4.14        12.62 
TCGA-IE-A4EH TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 
       21.37         3.22         1.38        25.22        31.76        28.21 
TCGA-IS-A3K7 TCGA-IS-A3KA TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W 
      143.41        13.58        22.62         6.25         1.05        11.70 
TCGA-MO-A47R 
        0.10 

$`10Q LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L2 
       14.04         2.04        12.85        24.49        46.68        42.44 
TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V 
       31.56        29.85        74.66         5.23        76.37        66.87 
TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 
       27.78        60.30         8.55         9.70        53.26        43.04 
TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 
        9.01        23.08        70.49       108.10        17.10        20.02 
TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-IE-A4EI TCGA-IS-A3K8 TCGA-IW-A3M4 
       15.02        17.75         4.50         8.94       116.88        73.28 
TCGA-IW-A3M5 TCGA-PC-A5DK 
        5.88        75.48 

  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
              0.07               2.04 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
            143.41             116.88 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
            11.700             26.135 
[1] "0.1 - 143.4 (11.7)" "2.0 - 116.9 (26.1)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
[1] "hr=" "1.9"
D58V2, continuous
D58V3, binary
                    cls
clus                  0  1
  10Q LOSS MUTATED   18  7
  10Q LOSS WILD-TYPE 10 22
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED     18    7
  10Q LOSS WILD-TYPE   10   22
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  FEMALE               18                 10
  MALE                  7                 22

Clustering(59) Variable = 11P LOSS MUTATION ANALYSIS
D59V1, survival
                    sevent
clus2                 0  1
  11P LOSS MUTATED   16  9
  11P LOSS WILD-TYPE 23  9
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                25                 32 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                 9                  9 
$`11P LOSS MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L2 
       14.04         2.04        27.19        24.49        18.51        42.44 
TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A3LT TCGA-DX-A3LW 
       74.66         6.28         9.70        53.26        23.08       108.10 
TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-FX-A3RE TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z 
       17.10        20.02         0.07        26.89         4.54         4.14 
TCGA-HB-A5W3 TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VF 
       12.62        25.22        31.76         5.88        22.62         1.05 
TCGA-MO-A47R 
        0.10 

$`11P LOSS WILD-TYPE`
TCGA-DX-A1KY TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U 
       12.85        46.68        31.56        29.85         5.23        76.37 
TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J4 TCGA-DX-A3LS 
       66.87        27.78        60.30         8.55        43.04         9.01 
TCGA-DX-A3LU TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS 
       70.49        15.02        17.75        42.77         4.50         0.46 
TCGA-FX-A3NJ TCGA-FX-A48G TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK 
        0.10         0.07        21.37         8.94         3.22         1.38 
TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-JV-A5VE 
       28.21       143.41       116.88        13.58        73.28         6.25 
TCGA-KF-A41W TCGA-PC-A5DK 
       11.70        75.48 

  11P LOSS MUTATED 11P LOSS WILD-TYPE 
              0.07               0.07 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
            108.10             143.41 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
             18.51              19.56 
[1] "0.1 - 108.1 (18.5)" "0.1 - 143.4 (19.6)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D59V2, continuous
D59V3, binary
                    cls
clus                  0  1
  11P LOSS MUTATED   11 14
  11P LOSS WILD-TYPE 17 15
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED     11   14
  11P LOSS WILD-TYPE   17   15
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  FEMALE               11                 17
  MALE                 14                 15

Clustering(60) Variable = 11Q LOSS MUTATION ANALYSIS
D60V1, survival
                    sevent
clus2                 0  1
  11Q LOSS MUTATED   11  8
  11Q LOSS WILD-TYPE 28 10
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                19                 38 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                 8                 10 
$`11Q LOSS MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L2 
       14.04         2.04        27.19        24.49        18.51        42.44 
TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A3LT TCGA-DX-A3M1 
       74.66         6.28         9.70        53.26        23.08        20.02 
TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IF-A4AK TCGA-IW-A3M5 TCGA-IW-A3M6 
       26.89         4.54        12.62        31.76         5.88        22.62 
TCGA-JV-A5VF 
        1.05 

$`11Q LOSS WILD-TYPE`
TCGA-DX-A1KY TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U 
       12.85        46.68        31.56        29.85         5.23        76.37 
TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J4 TCGA-DX-A3LS 
       66.87        27.78        60.30         8.55        43.04         9.01 
TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 
       70.49       108.10        17.10        15.02        17.75        42.77 
TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A43Z 
        4.50         0.46         0.10         0.07         0.07         4.14 
TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IS-A3K6 
       21.37         8.94         3.22         1.38        25.22        28.21 
TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-JV-A5VE TCGA-KF-A41W 
      143.41       116.88        13.58        73.28         6.25        11.70 
TCGA-MO-A47R TCGA-PC-A5DK 
        0.10        75.48 

  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
              1.05               0.07 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
             74.66             143.41 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
            20.020             17.425 
[1] "1.1 - 74.7 (20.0)"  "0.1 - 143.4 (17.4)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
[1] "hr=" "1.9"
D60V2, continuous
D60V3, binary
                    cls
clus                  0  1
  11Q LOSS MUTATED    8 11
  11Q LOSS WILD-TYPE 20 18
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED      8   11
  11Q LOSS WILD-TYPE   20   18
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  FEMALE                8                 20
  MALE                 11                 18

Clustering(61) Variable = 12P LOSS MUTATION ANALYSIS
D61V1, survival
                    sevent
clus2                 0  1
  12P LOSS MUTATED    9  3
  12P LOSS WILD-TYPE 30 15
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                12                 45 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 3                 15 
$`12P LOSS MUTATED`
TCGA-DX-A1KW TCGA-DX-A1L1 TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A2IZ TCGA-DX-A2J0 
        2.04        46.68        74.66         6.28         8.55         9.70 
TCGA-DX-A3LY TCGA-FX-A3NJ TCGA-IE-A4EJ TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W 
       17.10         0.10         3.22         6.25         1.05        11.70 

$`12P LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L2 
       14.04        27.19        12.85        24.49        18.51        42.44 
TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z 
       31.56        29.85         5.23        76.37        66.87        27.78 
TCGA-DX-A240 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU 
       60.30        53.26        43.04         9.01        23.08        70.49 
TCGA-DX-A3LW TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 
      108.10        20.02        15.02        17.75        42.77         4.50 
TCGA-FX-A2QS TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z 
        0.46         0.07         0.07        26.89         4.54         4.14 
TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK 
       12.62        21.37         8.94         1.38        25.22        31.76 
TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 
       28.21       143.41       116.88        13.58        73.28         5.88 
TCGA-IW-A3M6 TCGA-MO-A47R TCGA-PC-A5DK 
       22.62         0.10        75.48 

  12P LOSS MUTATED 12P LOSS WILD-TYPE 
              0.10               0.07 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
             74.66             143.41 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
             7.415             23.080 
[1] "0.1 - 74.7 (7.4)"   "0.1 - 143.4 (23.1)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D61V2, continuous
D61V3, binary
                    cls
clus                  0  1
  12P LOSS MUTATED    5  7
  12P LOSS WILD-TYPE 23 22
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      5    7
  12P LOSS WILD-TYPE   23   22
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  FEMALE                5                 23
  MALE                  7                 22

Clustering(62) Variable = 12Q LOSS MUTATION ANALYSIS
D62V1, survival
                    sevent
clus2                 0  1
  12Q LOSS MUTATED   10  4
  12Q LOSS WILD-TYPE 29 14
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                14                 43 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 4                 14 
$`12Q LOSS MUTATED`
TCGA-DX-A1KW TCGA-DX-A1L1 TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A2IZ TCGA-DX-A2J0 
        2.04        46.68        74.66         6.28         8.55         9.70 
TCGA-DX-A3LS TCGA-DX-A3LY TCGA-FX-A3NJ TCGA-IE-A4EH TCGA-IE-A4EJ TCGA-JV-A5VE 
        9.01        17.10         0.10        21.37         3.22         6.25 
TCGA-JV-A5VF TCGA-KF-A41W 
        1.05        11.70 

$`12Q LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L2 
       14.04        27.19        12.85        24.49        18.51        42.44 
TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z 
       31.56        29.85         5.23        76.37        66.87        27.78 
TCGA-DX-A240 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW 
       60.30        53.26        43.04        23.08        70.49       108.10 
TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS 
       20.02        15.02        17.75        42.77         4.50         0.46 
TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 
        0.07         0.07        26.89         4.54         4.14        12.62 
TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 
        8.94         1.38        25.22        31.76        28.21       143.41 
TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-MO-A47R 
      116.88        13.58        73.28         5.88        22.62         0.10 
TCGA-PC-A5DK 
       75.48 

  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              0.10               0.07 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
             74.66             143.41 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              8.78              24.49 
[1] "0.1 - 74.7 (8.8)"   "0.1 - 143.4 (24.5)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D62V2, continuous
D62V3, binary
                    cls
clus                  0  1
  12Q LOSS MUTATED    7  7
  12Q LOSS WILD-TYPE 21 22
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      7    7
  12Q LOSS WILD-TYPE   21   22
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  FEMALE                7                 21
  MALE                  7                 22

Clustering(63) Variable = 13Q LOSS MUTATION ANALYSIS
D63V1, survival
                    sevent
clus2                 0  1
  13Q LOSS MUTATED   17  8
  13Q LOSS WILD-TYPE 22 10
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                25                 32 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                 8                 10 
$`13Q LOSS MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A23R 
       14.04        27.19        24.49        18.51        46.68        74.66 
TCGA-DX-A23Y TCGA-DX-A2J0 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LY TCGA-DX-A3M1 
        6.28         9.70         9.01        23.08        17.10        20.02 
TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 
        0.07         0.07        26.89         4.54         4.14        12.62 
TCGA-IE-A4EJ TCGA-IS-A3K7 TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-JV-A5VF TCGA-KF-A41W 
        3.22       143.41        73.28        22.62         1.05        11.70 
TCGA-MO-A47R 
        0.10 

$`13Q LOSS WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T 
        2.04        12.85        42.44        31.56        29.85         5.23 
TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J1 
       76.37        66.87        27.78        60.30         8.55        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 
       43.04        70.49       108.10        15.02        17.75        42.77 
TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EK 
        4.50         0.46         0.10        21.37         8.94         1.38 
TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M5 
       25.22        31.76        28.21       116.88        13.58         5.88 
TCGA-JV-A5VE TCGA-PC-A5DK 
        6.25        75.48 

  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
              0.07               0.10 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
            143.41             116.88 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
             14.04              26.50 
[1] "0.1 - 143.4 (14.0)" "0.1 - 116.9 (26.5)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D63V2, continuous
D63V3, binary
                    cls
clus                  0  1
  13Q LOSS MUTATED   15 10
  13Q LOSS WILD-TYPE 13 19
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     15   10
  13Q LOSS WILD-TYPE   13   19
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  FEMALE               15                 13
  MALE                 10                 19

Clustering(64) Variable = 14Q LOSS MUTATION ANALYSIS
D64V1, survival
                    sevent
clus2                 0  1
  14Q LOSS MUTATED   17  4
  14Q LOSS WILD-TYPE 22 14
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                21                 36 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                 4                 14 
$`14Q LOSS MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L2 TCGA-DX-A23R 
       14.04         2.04        27.19        24.49        42.44        74.66 
TCGA-DX-A23Y TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LY TCGA-DX-A3U5 TCGA-FX-A2QS 
        6.28        23.08        70.49        17.10        15.02         0.46 
TCGA-FX-A3NJ TCGA-FX-A48G TCGA-IE-A4EJ TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 
        0.10         0.07         3.22        28.21       143.41       116.88 
TCGA-IW-A3M4 TCGA-JV-A5VE TCGA-JV-A5VF 
       73.28         6.25         1.05 

$`14Q LOSS WILD-TYPE`
TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T 
       12.85        18.51        46.68        31.56        29.85         5.23 
TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 
       76.37        66.87        27.78        60.30         8.55         9.70 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LW TCGA-DX-A3M1 TCGA-DX-A3U6 
       53.26        43.04         9.01       108.10        20.02        17.75 
TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A3RE TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z 
       42.77         4.50         0.07        26.89         4.54         4.14 
TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK 
       12.62        21.37         8.94         1.38        25.22        31.76 
TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
       13.58         5.88        22.62        11.70         0.10        75.48 

  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
              0.07               0.07 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
            143.41             108.10 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
            17.100             19.265 
[1] "0.1 - 143.4 (17.1)" "0.1 - 108.1 (19.3)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
[1] "hr=" "2.1"
D64V2, continuous
D64V3, binary
                    cls
clus                  0  1
  14Q LOSS MUTATED   11 10
  14Q LOSS WILD-TYPE 17 19
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED     11   10
  14Q LOSS WILD-TYPE   17   19
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  FEMALE               11                 17
  MALE                 10                 19

Clustering(65) Variable = 15Q LOSS MUTATION ANALYSIS
D65V1, survival
                    sevent
clus2                 0  1
  15Q LOSS MUTATED    7  4
  15Q LOSS WILD-TYPE 32 14
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                11                 46 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                 4                 14 
$`15Q LOSS MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A3LS TCGA-DX-A3LT TCGA-FX-A2QS TCGA-FX-A48G 
       14.04         2.04         9.01        23.08         0.46         0.07 
TCGA-HB-A3YV TCGA-IS-A3K7 TCGA-IW-A3M5 TCGA-JV-A5VE TCGA-KF-A41W 
        4.54       143.41         5.88         6.25        11.70 

$`15Q LOSS WILD-TYPE`
TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 
       27.19        12.85        24.49        18.51        46.68        42.44 
TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V 
       31.56        29.85        74.66         5.23        76.37        66.87 
TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 
        6.28        27.78        60.30         8.55         9.70        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 
       43.04        70.49       108.10        17.10        20.02        15.02 
TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-HB-A2OT 
       17.75        42.77         4.50         0.10         0.07        26.89 
TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK 
        4.14        12.62        21.37         8.94         3.22         1.38 
TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 
       25.22        31.76        28.21       116.88        13.58        73.28 
TCGA-IW-A3M6 TCGA-JV-A5VF TCGA-MO-A47R TCGA-PC-A5DK 
       22.62         1.05         0.10        75.48 

  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
              0.07               0.07 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
            143.41             116.88 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             6.250             23.555 
[1] "0.1 - 143.4 (6.2)"  "0.1 - 116.9 (23.6)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
[1] "hr=" "2.2"
D65V2, continuous
D65V3, binary
                    cls
clus                  0  1
  15Q LOSS MUTATED    7  4
  15Q LOSS WILD-TYPE 21 25
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED      7    4
  15Q LOSS WILD-TYPE   21   25
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  FEMALE                7                 21
  MALE                  4                 25

Clustering(66) Variable = 16P LOSS MUTATION ANALYSIS
D66V1, survival
                    sevent
clus2                 0  1
  16P LOSS MUTATED   10  5
  16P LOSS WILD-TYPE 29 13
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                15                 42 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 5                 13 
$`16P LOSS MUTATED`
TCGA-DX-A1L0 TCGA-DX-A1L2 TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A3LT TCGA-DX-A3U7 
       18.51        42.44        74.66         6.28        23.08        42.77 
TCGA-FX-A48G TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EJ TCGA-IS-A3K7 
        0.07         4.54         4.14        12.62         3.22       143.41 
TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W 
        6.25         1.05        11.70 

$`16P LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 
       14.04         2.04        27.19        12.85        24.49        46.68 
TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z 
       31.56        29.85         5.23        76.37        66.87        27.78 
TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS 
       60.30         8.55         9.70        53.26        43.04         9.01 
TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 
       70.49       108.10        17.10        20.02        15.02        17.75 
TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-HB-A2OT TCGA-IE-A4EH 
        4.50         0.46         0.10         0.07        26.89        21.37 
TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K8 
        8.94         1.38        25.22        31.76        28.21       116.88 
TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-MO-A47R TCGA-PC-A5DK 
       13.58        73.28         5.88        22.62         0.10        75.48 

  16P LOSS MUTATED 16P LOSS WILD-TYPE 
              0.07               0.07 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
            143.41             116.88 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
            11.700             21.995 
[1] "0.1 - 143.4 (11.7)" "0.1 - 116.9 (22.0)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D66V2, continuous
D66V3, binary
                    cls
clus                  0  1
  16P LOSS MUTATED    9  6
  16P LOSS WILD-TYPE 19 23
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED      9    6
  16P LOSS WILD-TYPE   19   23
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  FEMALE                9                 19
  MALE                  6                 23

Clustering(67) Variable = 16Q LOSS MUTATION ANALYSIS
D67V1, survival
                    sevent
clus2                 0  1
  16Q LOSS MUTATED   18  9
  16Q LOSS WILD-TYPE 21  9
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                27                 30 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                 9                  9 
$`16Q LOSS MUTATED`
TCGA-DX-A1KU TCGA-DX-A1L0 TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A2J0 TCGA-DX-A3LT 
       14.04        18.51        74.66         6.28         9.70        23.08 
TCGA-DX-A3LY TCGA-DX-A3U7 TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT 
       17.10        42.77         0.10         0.07         0.07        26.89 
TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ 
        4.54         4.14        12.62        21.37         8.94         3.22 
TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-JV-A5VE 
        1.38        25.22        31.76        13.58        73.28         6.25 
TCGA-JV-A5VF TCGA-KF-A41W TCGA-MO-A47R 
        1.05        11.70         0.10 

$`16Q LOSS WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L2 
        2.04        27.19        12.85        24.49        46.68        42.44 
TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z 
       31.56        29.85         5.23        76.37        66.87        27.78 
TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU 
       60.30         8.55        53.26        43.04         9.01        70.49 
TCGA-DX-A3LW TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A2QS 
      108.10        20.02        15.02        17.75         4.50         0.46 
TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-PC-A5DK 
       28.21       143.41       116.88         5.88        22.62        75.48 

  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
              0.07               0.46 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
             74.66             143.41 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
            11.700             27.995 
[1] "0.1 - 74.7 (11.7)"  "0.5 - 143.4 (28.0)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
[1] "hr=" "2.2"
D67V2, continuous
D67V3, binary
                    cls
clus                  0  1
  16Q LOSS MUTATED   16 11
  16Q LOSS WILD-TYPE 12 18
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED     16   11
  16Q LOSS WILD-TYPE   12   18
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  FEMALE               16                 12
  MALE                 11                 18

Clustering(68) Variable = 17P LOSS MUTATION ANALYSIS
D68V1, survival
                    sevent
clus2                 0  1
  17P LOSS MUTATED    9  2
  17P LOSS WILD-TYPE 30 16
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                11                 46 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                 2                 16 
$`17P LOSS MUTATED`
TCGA-DX-A1KZ TCGA-DX-A23R TCGA-DX-A3LT TCGA-FX-A3NJ TCGA-HB-A2OT TCGA-IE-A4EJ 
       24.49        74.66        23.08         0.10        26.89         3.22 
TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-KF-A41W 
        1.38        25.22        28.21       143.41        11.70 

$`17P LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L1 
       14.04         2.04        27.19        12.85        18.51        46.68 
TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V 
       42.44        31.56        29.85         5.23        76.37        66.87 
TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 
        6.28        27.78        60.30         8.55         9.70        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 
       43.04         9.01        70.49       108.10        17.10        20.02 
TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3RE 
       15.02        17.75        42.77         4.50         0.46         0.07 
TCGA-FX-A48G TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI 
        0.07         4.54         4.14        12.62        21.37         8.94 
TCGA-IF-A4AK TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 
       31.76       116.88        13.58        73.28         5.88        22.62 
TCGA-JV-A5VE TCGA-JV-A5VF TCGA-MO-A47R TCGA-PC-A5DK 
        6.25         1.05         0.10        75.48 

  17P LOSS MUTATED 17P LOSS WILD-TYPE 
              0.10               0.07 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
            143.41             116.88 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
            24.490             17.425 
[1] "0.1 - 143.4 (24.5)" "0.1 - 116.9 (17.4)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
[1] "hr=" "2"  
D68V2, continuous
D68V3, binary
                    cls
clus                  0  1
  17P LOSS MUTATED    6  5
  17P LOSS WILD-TYPE 22 24
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED      6    5
  17P LOSS WILD-TYPE   22   24
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  FEMALE                6                 22
  MALE                  5                 24

Clustering(69) Variable = 17Q LOSS MUTATION ANALYSIS
D69V1, survival
                    sevent
clus2                 0  1
  17Q LOSS MUTATED    6  1
  17Q LOSS WILD-TYPE 33 17
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 7                 50 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 1                 17 
$`17Q LOSS MUTATED`
TCGA-DX-A23R TCGA-DX-A3LT TCGA-FX-A3NJ TCGA-HB-A2OT TCGA-IE-A4EJ TCGA-IF-A4AJ 
       74.66        23.08         0.10        26.89         3.22        25.22 
TCGA-KF-A41W 
       11.70 

$`17Q LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 
       14.04         2.04        27.19        12.85        24.49        18.51 
TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U 
       46.68        42.44        31.56        29.85         5.23        76.37 
TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 
       66.87         6.28        27.78        60.30         8.55         9.70 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY 
       53.26        43.04         9.01        70.49       108.10        17.10 
TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS 
       20.02        15.02        17.75        42.77         4.50         0.46 
TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH 
        0.07         0.07         4.54         4.14        12.62        21.37 
TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 
        8.94         1.38        31.76        28.21       143.41       116.88 
TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF 
       13.58        73.28         5.88        22.62         6.25         1.05 
TCGA-MO-A47R TCGA-PC-A5DK 
        0.10        75.48 

  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
              0.10               0.07 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
             74.66             143.41 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
             23.08              18.13 
[1] "0.1 - 74.7 (23.1)"  "0.1 - 143.4 (18.1)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
[1] "hr=" "2"  
D69V2, continuous
D69V3, binary
                    cls
clus                  0  1
  17Q LOSS MUTATED    4  3
  17Q LOSS WILD-TYPE 24 26
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      4    3
  17Q LOSS WILD-TYPE   24   26
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  FEMALE                4                 24
  MALE                  3                 26

Clustering(70) Variable = 18P LOSS MUTATION ANALYSIS
D70V1, survival
                    sevent
clus2                 0  1
  18P LOSS MUTATED   10  4
  18P LOSS WILD-TYPE 29 14
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                14                 43 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                 4                 14 
$`18P LOSS MUTATED`
TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A2J0 TCGA-DX-A3LT TCGA-HB-A2OT 
       27.19        12.85        18.51         9.70        23.08        26.89 
TCGA-IE-A4EH TCGA-IE-A4EJ TCGA-IF-A4AK TCGA-IS-A3K7 TCGA-IW-A3M4 TCGA-IW-A3M6 
       21.37         3.22        31.76       143.41        73.28        22.62 
TCGA-JV-A5VF TCGA-KF-A41W 
        1.05        11.70 

$`18P LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 
       14.04         2.04        24.49        46.68        42.44        31.56 
TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y 
       29.85        74.66         5.23        76.37        66.87         6.28 
TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS 
       27.78        60.30         8.55        53.26        43.04         9.01 
TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 
       70.49       108.10        17.10        20.02        15.02        17.75 
TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G 
       42.77         4.50         0.46         0.10         0.07         0.07 
TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AJ 
        4.54         4.14        12.62         8.94         1.38        25.22 
TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-JV-A5VE TCGA-MO-A47R 
       28.21       116.88        13.58         5.88         6.25         0.10 
TCGA-PC-A5DK 
       75.48 

  18P LOSS MUTATED 18P LOSS WILD-TYPE 
              1.05               0.07 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
            143.41             116.88 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
            21.995             17.100 
[1] "1.1 - 143.4 (22.0)" "0.1 - 116.9 (17.1)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D70V2, continuous
D70V3, binary
                    cls
clus                  0  1
  18P LOSS MUTATED   10  4
  18P LOSS WILD-TYPE 18 25
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED     10    4
  18P LOSS WILD-TYPE   18   25
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  FEMALE               10                 18
  MALE                  4                 25

Clustering(71) Variable = 18Q LOSS MUTATION ANALYSIS
D71V1, survival
                    sevent
clus2                 0  1
  18Q LOSS MUTATED    9  6
  18Q LOSS WILD-TYPE 30 12
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                15                 42 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                 6                 12 
$`18Q LOSS MUTATED`
TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A23Y TCGA-DX-A2J0 TCGA-DX-A3LT 
       27.19        12.85        18.51         6.28         9.70        23.08 
TCGA-FX-A48G TCGA-HB-A2OT TCGA-IE-A4EJ TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K7 
        0.07        26.89         3.22        25.22        31.76       143.41 
TCGA-IW-A3M6 TCGA-JV-A5VF TCGA-KF-A41W 
       22.62         1.05        11.70 

$`18Q LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 
       14.04         2.04        24.49        46.68        42.44        31.56 
TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z 
       29.85        74.66         5.23        76.37        66.87        27.78 
TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU 
       60.30         8.55        53.26        43.04         9.01        70.49 
TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 
      108.10        17.10        20.02        15.02        17.75        42.77 
TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-HB-A3YV TCGA-HB-A43Z 
        4.50         0.46         0.10         0.07         4.54         4.14 
TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IS-A3K6 TCGA-IS-A3K8 
       12.62        21.37         8.94         1.38        28.21       116.88 
TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-JV-A5VE TCGA-MO-A47R TCGA-PC-A5DK 
       13.58        73.28         5.88         6.25         0.10        75.48 

  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
              0.07               0.07 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
            143.41             116.88 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
            18.510             18.885 
[1] "0.1 - 143.4 (18.5)" "0.1 - 116.9 (18.9)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D71V2, continuous
D71V3, binary
                    cls
clus                  0  1
  18Q LOSS MUTATED    9  6
  18Q LOSS WILD-TYPE 19 23
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED      9    6
  18Q LOSS WILD-TYPE   19   23
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  FEMALE                9                 19
  MALE                  6                 23

Clustering(72) Variable = 19P LOSS MUTATION ANALYSIS
D72V1, survival
                    sevent
clus2                 0  1
  19P LOSS MUTATED    4  0
  19P LOSS WILD-TYPE 35 18
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 4                 53 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 0                 18 
$`19P LOSS MUTATED`
TCGA-DX-A3LT TCGA-FX-A48G TCGA-IE-A4EH TCGA-IW-A3M6 
       23.08         0.07        21.37        22.62 

$`19P LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 
       14.04         2.04        27.19        12.85        24.49        18.51 
TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T 
       46.68        42.44        31.56        29.85        74.66         5.23 
TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ 
       76.37        66.87         6.28        27.78        60.30         8.55 
TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU TCGA-DX-A3LW 
        9.70        53.26        43.04         9.01        70.49       108.10 
TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 
       17.10        20.02        15.02        17.75        42.77         4.50 
TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z 
        0.46         0.10         0.07        26.89         4.54         4.14 
TCGA-HB-A5W3 TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK 
       12.62         8.94         3.22         1.38        25.22        31.76 
TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 
       28.21       143.41       116.88        13.58        73.28         5.88 
TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
        6.25         1.05        11.70         0.10        75.48 

  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              0.07               0.07 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
             23.08             143.41 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
            21.995             17.750 
[1] "0.1 - 23.1 (22.0)"  "0.1 - 143.4 (17.8)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
[1] "hr="     "7.5e+07"
D72V2, continuous
D72V3, binary
                    cls
clus                  0  1
  19P LOSS MUTATED    3  1
  19P LOSS WILD-TYPE 25 28
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED      3    1
  19P LOSS WILD-TYPE   25   28
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  FEMALE                3                 25
  MALE                  1                 28

Clustering(73) Variable = 19Q LOSS MUTATION ANALYSIS
D73V1, survival
                    sevent
clus2                 0  1
  19Q LOSS MUTATED    7  3
  19Q LOSS WILD-TYPE 32 15
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                10                 47 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 3                 15 
$`19Q LOSS MUTATED`
TCGA-DX-A1L0 TCGA-DX-A2J0 TCGA-DX-A3LT TCGA-DX-A3U7 TCGA-FX-A48G TCGA-HB-A3YV 
       18.51         9.70        23.08        42.77         0.07         4.54 
TCGA-IE-A4EH TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-PC-A5DK 
       21.37        73.28        22.62        75.48 

$`19Q LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 
       14.04         2.04        27.19        12.85        24.49        46.68 
TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U 
       42.44        31.56        29.85        74.66         5.23        76.37 
TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J1 
       66.87         6.28        27.78        60.30         8.55        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 
       43.04         9.01        70.49       108.10        17.10        20.02 
TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE 
       15.02        17.75         4.50         0.46         0.10         0.07 
TCGA-HB-A2OT TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK 
       26.89         4.14        12.62         8.94         3.22         1.38 
TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA 
       25.22        31.76        28.21       143.41       116.88        13.58 
TCGA-IW-A3M5 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W TCGA-MO-A47R 
        5.88         6.25         1.05        11.70         0.10 

  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              0.07               0.07 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             75.48             143.41 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
            21.995             17.100 
[1] "0.1 - 75.5 (22.0)"  "0.1 - 143.4 (17.1)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
[1] "hr=" "1.1"
D73V2, continuous
D73V3, binary
                    cls
clus                  0  1
  19Q LOSS MUTATED    4  6
  19Q LOSS WILD-TYPE 24 23
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      4    6
  19Q LOSS WILD-TYPE   24   23
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  FEMALE                4                 24
  MALE                  6                 23

Clustering(74) Variable = 20P LOSS MUTATION ANALYSIS
D74V1, survival
                    sevent
clus2                 0  1
  20P LOSS MUTATED    6  1
  20P LOSS WILD-TYPE 33 17
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 7                 50 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 1                 17 
$`20P LOSS MUTATED`
TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-FX-A2QS TCGA-JV-A5VE 
        9.01        23.08        17.10        20.02         0.46         6.25 
TCGA-PC-A5DK 
       75.48 

$`20P LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 
       14.04         2.04        27.19        12.85        24.49        18.51 
TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T 
       46.68        42.44        31.56        29.85        74.66         5.23 
TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ 
       76.37        66.87         6.28        27.78        60.30         8.55 
TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3U5 
        9.70        53.26        43.04        70.49       108.10        15.02 
TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G 
       17.75        42.77         4.50         0.10         0.07         0.07 
TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI 
       26.89         4.54         4.14        12.62        21.37         8.94 
TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 
        3.22         1.38        25.22        31.76        28.21       143.41 
TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VF 
      116.88        13.58        73.28         5.88        22.62         1.05 
TCGA-KF-A41W TCGA-MO-A47R 
       11.70         0.10 

  20P LOSS MUTATED 20P LOSS WILD-TYPE 
              0.46               0.07 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
             75.48             143.41 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
             17.10              19.94 
[1] "0.5 - 75.5 (17.1)"  "0.1 - 143.4 (19.9)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
  "20P LOSS MUTATED"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED"   "20P LOSS MUTATED" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
  "20P LOSS MUTATED"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED"   "20P LOSS MUTATED" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
  "20P LOSS MUTATED"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED"   "20P LOSS MUTATED" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
[1] "hr=" "1.9"
D74V2, continuous
D74V3, binary
                    cls
clus                  0  1
  20P LOSS MUTATED    3  4
  20P LOSS WILD-TYPE 25 25
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      3    4
  20P LOSS WILD-TYPE   25   25
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  FEMALE                3                 25
  MALE                  4                 25

Clustering(75) Variable = 20Q LOSS MUTATION ANALYSIS
D75V1, survival
                    sevent
clus2                 0  1
  20Q LOSS MUTATED    4  1
  20Q LOSS WILD-TYPE 35 17
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 5                 52 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 1                 17 
$`20Q LOSS MUTATED`
TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-JV-A5VE 
        9.01        23.08        17.10        20.02         6.25 

$`20Q LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 
       14.04         2.04        27.19        12.85        24.49        18.51 
TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T 
       46.68        42.44        31.56        29.85        74.66         5.23 
TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ 
       76.37        66.87         6.28        27.78        60.30         8.55 
TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3U5 
        9.70        53.26        43.04        70.49       108.10        15.02 
TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE 
       17.75        42.77         4.50         0.46         0.10         0.07 
TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH 
        0.07        26.89         4.54         4.14        12.62        21.37 
TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 
        8.94         3.22         1.38        25.22        31.76        28.21 
TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 
      143.41       116.88        13.58        73.28         5.88        22.62 
TCGA-JV-A5VF TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
        1.05        11.70         0.10        75.48 

  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
              6.25               0.07 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
             23.08             143.41 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
             17.10              19.94 
[1] "6.2 - 23.1 (17.1)"  "0.1 - 143.4 (19.9)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
  "20Q LOSS MUTATED"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED"   "20Q LOSS MUTATED" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
  "20Q LOSS MUTATED"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED"   "20Q LOSS MUTATED" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
  "20Q LOSS MUTATED"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED"   "20Q LOSS MUTATED" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D75V2, continuous
D75V3, binary
                    cls
clus                  0  1
  20Q LOSS MUTATED    2  3
  20Q LOSS WILD-TYPE 26 26
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      2    3
  20Q LOSS WILD-TYPE   26   26
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  FEMALE                2                 26
  MALE                  3                 26

Clustering(76) Variable = 21Q LOSS MUTATION ANALYSIS
D76V1, survival
                    sevent
clus2                 0  1
  21Q LOSS MUTATED   11  2
  21Q LOSS WILD-TYPE 28 16
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                13                 44 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                 2                 16 
$`21Q LOSS MUTATED`
TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-DX-A1L2 TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A3LY 
       27.19        18.51        42.44        74.66         6.28        17.10 
TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-HB-A2OT TCGA-IS-A3K7 TCGA-IW-A3M6 TCGA-JV-A5VE 
       20.02        15.02        26.89       143.41        22.62         6.25 
TCGA-KF-A41W 
       11.70 

$`21Q LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L3 
       14.04         2.04        12.85        24.49        46.68        31.56 
TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 
       29.85         5.23        76.37        66.87        27.78        60.30 
TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT 
        8.55         9.70        53.26        43.04         9.01        23.08 
TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS 
       70.49       108.10        17.75        42.77         4.50         0.46 
TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 
        0.10         0.07         0.07         4.54         4.14        12.62 
TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK 
       21.37         8.94         3.22         1.38        25.22        31.76 
TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-JV-A5VF 
       28.21       116.88        13.58        73.28         5.88         1.05 
TCGA-MO-A47R TCGA-PC-A5DK 
        0.10        75.48 

  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
              6.25               0.07 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
            143.41             116.88 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
            20.020             15.895 
[1] "6.2 - 143.4 (20.0)" "0.1 - 116.9 (15.9)"
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
[1] "hr=" "2.8"
D76V2, continuous
D76V3, binary
                    cls
clus                  0  1
  21Q LOSS MUTATED    7  6
  21Q LOSS WILD-TYPE 21 23
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED      7    6
  21Q LOSS WILD-TYPE   21   23
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  FEMALE                7                 21
  MALE                  6                 23

Clustering(77) Variable = 22Q LOSS MUTATION ANALYSIS
D77V1, survival
                    sevent
clus2                 0  1
  22Q LOSS MUTATED   14  7
  22Q LOSS WILD-TYPE 25 11
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                21                 36 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                 7                 11 
$`22Q LOSS MUTATED`
TCGA-DX-A1KW TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A2IZ 
        2.04        46.68        42.44        66.87         6.28         8.55 
TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LW TCGA-DX-A3M1 TCGA-FX-A3RE TCGA-FX-A48G 
        9.01        23.08       108.10        20.02         0.07         0.07 
TCGA-HB-A3YV TCGA-IE-A4EH TCGA-IF-A4AJ TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IW-A3M5 
        4.54        21.37        25.22       143.41       116.88         5.88 
TCGA-IW-A3M6 TCGA-JV-A5VF TCGA-KF-A41W 
       22.62         1.05        11.70 

$`22Q LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L3 
       14.04        27.19        12.85        24.49        18.51        31.56 
TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23Z TCGA-DX-A240 
       29.85        74.66         5.23        76.37        27.78        60.30 
TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LU TCGA-DX-A3LY TCGA-DX-A3U5 
        9.70        53.26        43.04        70.49        17.10        15.02 
TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-HB-A2OT 
       17.75        42.77         4.50         0.46         0.10        26.89 
TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AK 
        4.14        12.62         8.94         3.22         1.38        31.76 
TCGA-IS-A3K6 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-JV-A5VE TCGA-MO-A47R TCGA-PC-A5DK 
       28.21        13.58        73.28         6.25         0.10        75.48 

  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
              0.07               0.10 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
            143.41              76.37 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
             20.02              18.13 
[1] "0.1 - 143.4 (20.0)" "0.1 - 76.4 (18.1)" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DX-A1KU         TCGA-DX-A1KW         TCGA-DX-A1KX 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-DX-A1KY         TCGA-DX-A1KZ         TCGA-DX-A1L0 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DX-A1L1         TCGA-DX-A1L2         TCGA-DX-A1L3 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-DX-A1L4         TCGA-DX-A23R         TCGA-DX-A23T 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DX-A23U         TCGA-DX-A23V         TCGA-DX-A23Y 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-DX-A23Z         TCGA-DX-A240         TCGA-DX-A2IZ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DX-A2J0         TCGA-DX-A2J1         TCGA-DX-A2J4 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DX-A3LS         TCGA-DX-A3LT         TCGA-DX-A3LU 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-DX-A3LW         TCGA-DX-A3LY         TCGA-DX-A3M1 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DX-A3U5         TCGA-DX-A3U6         TCGA-DX-A3U7 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DX-A3U8         TCGA-FX-A2QS         TCGA-FX-A3NJ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FX-A3RE         TCGA-FX-A48G         TCGA-HB-A2OT 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-HB-A3YV         TCGA-HB-A43Z         TCGA-HB-A5W3 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IE-A4EH         TCGA-IE-A4EI         TCGA-IE-A4EJ 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IE-A4EK         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-KF-A41W         TCGA-MO-A47R         TCGA-PC-A5DK 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D77V2, continuous
D77V3, binary
                    cls
clus                  0  1
  22Q LOSS MUTATED   11 10
  22Q LOSS WILD-TYPE 17 19
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED     11   10
  22Q LOSS WILD-TYPE   17   19
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  FEMALE               11                 17
  MALE                 10                 19

Clustering(78) Variable = XQ LOSS MUTATION ANALYSIS
D78V1, survival
                   sevent
clus2                0  1
  XQ LOSS MUTATED   12  7
  XQ LOSS WILD-TYPE 27 11
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               19                38 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                7                11 
$`XQ LOSS MUTATED`
TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A2J0 
       27.19        12.85        18.51        46.68        42.44         9.70 
TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-FX-A48G TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IE-A4EH 
       17.10        20.02         0.07         4.54        12.62        21.37 
TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IW-A3M4 TCGA-IW-A3M6 
       25.22        31.76        28.21       143.41        73.28        22.62 
TCGA-JV-A5VE 
        6.25 

$`XQ LOSS WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KZ TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R 
       14.04         2.04        24.49        31.56        29.85        74.66 
TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 
        5.23        76.37        66.87         6.28        27.78        60.30 
TCGA-DX-A2IZ TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU 
        8.55        53.26        43.04         9.01        23.08        70.49 
TCGA-DX-A3LW TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS 
      108.10        15.02        17.75        42.77         4.50         0.46 
TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-HB-A2OT TCGA-HB-A43Z TCGA-IE-A4EI TCGA-IE-A4EJ 
        0.10         0.07        26.89         4.14         8.94         3.22 
TCGA-IE-A4EK TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-JV-A5VF TCGA-KF-A41W 
        1.38       116.88        13.58         5.88         1.05        11.70 
TCGA-MO-A47R TCGA-PC-A5DK 
        0.10        75.48 

  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
             0.07              0.07 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
           143.41            116.88 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
            21.37             14.53 
[1] "0.1 - 143.4 (21.4)" "0.1 - 116.9 (14.5)"
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"XQ LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"XQ LOSS WILD-TYPE" 
       TCGA-DX-A1KU        TCGA-DX-A1KW        TCGA-DX-A1KX        TCGA-DX-A1KY 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-DX-A1KZ        TCGA-DX-A1L0        TCGA-DX-A1L1        TCGA-DX-A1L2 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-DX-A1L3        TCGA-DX-A1L4        TCGA-DX-A23R        TCGA-DX-A23T 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DX-A23U        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DX-A240        TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-DX-A2J4        TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DX-A3LW        TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3U5 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A48G        TCGA-HB-A2OT 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-HB-A3YV        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-IE-A4EH 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A4AJ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7        TCGA-IS-A3K8 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-KF-A41W        TCGA-MO-A47R 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-PC-A5DK 
"XQ LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D78V2, continuous
D78V3, binary
                   cls
clus                 0  1
  XQ LOSS MUTATED   10  9
  XQ LOSS WILD-TYPE 18 20
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED     10    9
  XQ LOSS WILD-TYPE   18   20
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  FEMALE              10                18
  MALE                 9                20
> q(save="no")
