
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/SARC-TP/4430100/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/SARC-TP/4401947/SARC-TP.clin.merged.picked.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=SARC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=SARC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/SARC-TP/4401947/SARC-TP.clin.merged.picked.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/SARC-TP/4430100/transformed.cor.cli.txt"

nPatients in clinical file=74, in cluster file=83, common to both=57
[1] 48 57
[1] "AMP PEAK  1(1P32.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE 
                           17                            40 
  AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE 
                           17                            40 
[1] "AMP PEAK  2(1Q24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q24.3) MUTATED AMP PEAK  2(1Q24.3) WILD-TYPE 
                           21                            36 
  AMP PEAK  2(1Q24.3) MUTATED AMP PEAK  2(1Q24.3) WILD-TYPE 
                           21                            36 
[1] "AMP PEAK  3(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(5P15.33) MUTATED AMP PEAK  3(5P15.33) WILD-TYPE 
                            24                             33 
  AMP PEAK  3(5P15.33) MUTATED AMP PEAK  3(5P15.33) WILD-TYPE 
                            24                             33 
[1] "AMP PEAK  4(6P21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE 
                           14                            43 
  AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE 
                           14                            43 
[1] "AMP PEAK  5(6Q24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(6Q24.3) MUTATED AMP PEAK  5(6Q24.3) WILD-TYPE 
                           22                            35 
  AMP PEAK  5(6Q24.3) MUTATED AMP PEAK  5(6Q24.3) WILD-TYPE 
                           22                            35 
[1] "AMP PEAK  6(7P21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE 
                           20                            37 
  AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE 
                           20                            37 
[1] "AMP PEAK  7(11Q22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(11Q22.2) MUTATED AMP PEAK  7(11Q22.2) WILD-TYPE 
                            11                             46 
  AMP PEAK  7(11Q22.2) MUTATED AMP PEAK  7(11Q22.2) WILD-TYPE 
                            11                             46 
[1] "AMP PEAK  8(12P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(12P12.1) MUTATED AMP PEAK  8(12P12.1) WILD-TYPE 
                            14                             43 
  AMP PEAK  8(12P12.1) MUTATED AMP PEAK  8(12P12.1) WILD-TYPE 
                            14                             43 
[1] "AMP PEAK  9(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE 
                          32                           25 
  AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE 
                          32                           25 
[1] "AMP PEAK 10(17P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(17P11.2) MUTATED AMP PEAK 10(17P11.2) WILD-TYPE 
                            15                             42 
  AMP PEAK 10(17P11.2) MUTATED AMP PEAK 10(17P11.2) WILD-TYPE 
                            15                             42 
[1] "AMP PEAK 11(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(19P13.2) MUTATED AMP PEAK 11(19P13.2) WILD-TYPE 
                            19                             38 
  AMP PEAK 11(19P13.2) MUTATED AMP PEAK 11(19P13.2) WILD-TYPE 
                            19                             38 
[1] "AMP PEAK 12(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(19Q12) MUTATED AMP PEAK 12(19Q12) WILD-TYPE 
                          20                           37 
  AMP PEAK 12(19Q12) MUTATED AMP PEAK 12(19Q12) WILD-TYPE 
                          20                           37 
[1] "AMP PEAK 13(XQ21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(XQ21.1) MUTATED AMP PEAK 13(XQ21.1) WILD-TYPE 
                           11                            46 
  AMP PEAK 13(XQ21.1) MUTATED AMP PEAK 13(XQ21.1) WILD-TYPE 
                           11                            46 
[1] "DEL PEAK  1(1P36.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            18                             39 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            18                             39 
[1] "DEL PEAK  2(1P32.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE 
                           12                            45 
  DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE 
                           12                            45 
[1] "DEL PEAK  3(1Q44) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         19                          38 
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         19                          38 
[1] "DEL PEAK  4(2P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2P25.3) MUTATED DEL PEAK  4(2P25.3) WILD-TYPE 
                           15                            42 
  DEL PEAK  4(2P25.3) MUTATED DEL PEAK  4(2P25.3) WILD-TYPE 
                           15                            42 
[1] "DEL PEAK  5(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                           22                            35 
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                           22                            35 
[1] "DEL PEAK  6(3P21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE 
                            16                             41 
  DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE 
                            16                             41 
[1] "DEL PEAK  7(3Q25.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3Q25.2) MUTATED DEL PEAK  7(3Q25.2) WILD-TYPE 
                           17                            40 
  DEL PEAK  7(3Q25.2) MUTATED DEL PEAK  7(3Q25.2) WILD-TYPE 
                           17                            40 
[1] "DEL PEAK  8(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE 
                           26                            31 
  DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE 
                           26                            31 
[1] "DEL PEAK  9(6P24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(6P24.3) MUTATED DEL PEAK  9(6P24.3) WILD-TYPE 
                           17                            40 
  DEL PEAK  9(6P24.3) MUTATED DEL PEAK  9(6P24.3) WILD-TYPE 
                           17                            40 
[1] "DEL PEAK 10(6Q15) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE 
                          9                          48 
  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE 
                          9                          48 
[1] "DEL PEAK 11(7Q36.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(7Q36.3) MUTATED DEL PEAK 11(7Q36.3) WILD-TYPE 
                           13                            44 
  DEL PEAK 11(7Q36.3) MUTATED DEL PEAK 11(7Q36.3) WILD-TYPE 
                           13                            44 
[1] "DEL PEAK 12(8P23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(8P23.3) MUTATED DEL PEAK 12(8P23.3) WILD-TYPE 
                           17                            40 
  DEL PEAK 12(8P23.3) MUTATED DEL PEAK 12(8P23.3) WILD-TYPE 
                           17                            40 
[1] "DEL PEAK 13(9P24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(9P24.3) MUTATED DEL PEAK 13(9P24.3) WILD-TYPE 
                           24                            33 
  DEL PEAK 13(9P24.3) MUTATED DEL PEAK 13(9P24.3) WILD-TYPE 
                           24                            33 
[1] "DEL PEAK 14(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE 
                           29                            28 
  DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE 
                           29                            28 
[1] "DEL PEAK 15(9Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(9Q34.3) MUTATED DEL PEAK 15(9Q34.3) WILD-TYPE 
                           14                            43 
  DEL PEAK 15(9Q34.3) MUTATED DEL PEAK 15(9Q34.3) WILD-TYPE 
                           14                            43 
[1] "DEL PEAK 16(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE 
                            26                             31 
  DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE 
                            26                             31 
[1] "DEL PEAK 17(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                             26                              31 
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                             26                              31 
[1] "DEL PEAK 18(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE 
                            26                             31 
  DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE 
                            26                             31 
[1] "DEL PEAK 19(11Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE 
                            22                             35 
  DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE 
                            22                             35 
[1] "DEL PEAK 20(11Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(11Q24.3) MUTATED DEL PEAK 20(11Q24.3) WILD-TYPE 
                            26                             31 
  DEL PEAK 20(11Q24.3) MUTATED DEL PEAK 20(11Q24.3) WILD-TYPE 
                            26                             31 
[1] "DEL PEAK 21(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE 
                            16                             41 
  DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE 
                            16                             41 
[1] "DEL PEAK 22(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE 
                            38                             19 
  DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE 
                            38                             19 
[1] "DEL PEAK 23(14Q24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(14Q24.1) MUTATED DEL PEAK 23(14Q24.1) WILD-TYPE 
                            27                             30 
  DEL PEAK 23(14Q24.1) MUTATED DEL PEAK 23(14Q24.1) WILD-TYPE 
                            27                             30 
[1] "DEL PEAK 24(16Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(16Q12.1) MUTATED DEL PEAK 24(16Q12.1) WILD-TYPE 
                            31                             26 
  DEL PEAK 24(16Q12.1) MUTATED DEL PEAK 24(16Q12.1) WILD-TYPE 
                            31                             26 
[1] "DEL PEAK 25(17P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(17P13.1) MUTATED DEL PEAK 25(17P13.1) WILD-TYPE 
                            15                             42 
  DEL PEAK 25(17P13.1) MUTATED DEL PEAK 25(17P13.1) WILD-TYPE 
                            15                             42 
[1] "DEL PEAK 26(17Q25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(17Q25.3) MUTATED DEL PEAK 26(17Q25.3) WILD-TYPE 
                            16                             41 
  DEL PEAK 26(17Q25.3) MUTATED DEL PEAK 26(17Q25.3) WILD-TYPE 
                            16                             41 
[1] "DEL PEAK 27(18P11.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(18P11.32) MUTATED DEL PEAK 27(18P11.32) WILD-TYPE 
                             19                              38 
  DEL PEAK 27(18P11.32) MUTATED DEL PEAK 27(18P11.32) WILD-TYPE 
                             19                              38 
[1] "DEL PEAK 28(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(18Q23) MUTATED DEL PEAK 28(18Q23) WILD-TYPE 
                          21                           36 
  DEL PEAK 28(18Q23) MUTATED DEL PEAK 28(18Q23) WILD-TYPE 
                          21                           36 
[1] "DEL PEAK 29(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE 
                            15                             42 
  DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE 
                            15                             42 
[1] "DEL PEAK 30(19Q13.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE 
                             17                              40 
  DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE 
                             17                              40 
[1] "DEL PEAK 31(21Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(21Q22.3) MUTATED DEL PEAK 31(21Q22.3) WILD-TYPE 
                            21                             36 
  DEL PEAK 31(21Q22.3) MUTATED DEL PEAK 31(21Q22.3) WILD-TYPE 
                            21                             36 
[1] "DEL PEAK 32(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE 
                             26                              31 
  DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE 
                             26                              31 
[1] "DEL PEAK 33(XP21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE 
                           12                            45 
  DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE 
                           12                            45 
[1] "DEL PEAK 34(XQ21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(XQ21.1) MUTATED DEL PEAK 34(XQ21.1) WILD-TYPE 
                           23                            34 
  DEL PEAK 34(XQ21.1) MUTATED DEL PEAK 34(XQ21.1) WILD-TYPE 
                           23                            34 
[1] "DEL PEAK 35(XQ27.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(XQ27.1) MUTATED DEL PEAK 35(XQ27.1) WILD-TYPE 
                           25                            32 
  DEL PEAK 35(XQ27.1) MUTATED DEL PEAK 35(XQ27.1) WILD-TYPE 
                           25                            32 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
[1] "YEARSTOBIRTH"                          
[2] "VITALSTATUS"                           
[3] "DAYSTODEATH"                           
[4] "DAYSTOLASTFOLLOWUP"                    
[5] "DCCUPLOADDATE"                         
[6] "GENDER"                                
[7] "RADIATIONTHERAPY"                      
[8] "RADIATIONS.RADIATION.REGIMENINDICATION"
[9] "BATCHNUMBER"                           

Input Data has 9 rows and 57 columns.

[1] "Batch" "9"    
[1] "Last Follow UP"
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 
          NA           62          827           NA          745           NA 
TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T 
        1420         1291          960          908         2271           NA 
TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ 
          NA           NA           NA           NA         1834          260 
TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU 
          NA         1620         1309           NA          702         2144 
TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 
        3288          520          609          457          540         1301 
TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT 
          NA           14            3            2            2          818 
TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ 
          NA          126           NA          650          272           98 
TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 
          42           NA          966           NA         4362         3555 
TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF 
          NA         2229           NA          688          190           NA 
TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
         356            3         2296 
Variable 1:'AGE':	nDistinctValues=33,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=18,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=37,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 8:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 9:'BATCH.NUMBER':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"    "GENDER"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 57 columns, 1 survival variables, and 2 non-survival variables.
AGE, nv=33, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P32.1) MUTATION ANALYSIS
D1V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  1(1P32.1) MUTATED    9  8
  AMP PEAK  1(1P32.1) WILD-TYPE 30 10
  AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE 
                           17                            40 
  AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE 
                            8                            10 
$`AMP PEAK  1(1P32.1) MUTATED`
TCGA-DX-A1L0 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A2IZ 
       18.51         5.23        76.37        66.87         6.28         8.55 
TCGA-DX-A2J0 TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3U7 TCGA-FX-A2QS TCGA-HB-A2OT 
        9.70        23.08        70.49        42.77         0.46        26.89 
TCGA-HB-A3YV TCGA-HB-A43Z TCGA-IE-A4EI TCGA-JV-A5VF TCGA-KF-A41W 
        4.54         4.14         8.94         1.05        11.70 

$`AMP PEAK  1(1P32.1) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 
       14.04         2.04        27.19        12.85        24.49        46.68 
TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23Z TCGA-DX-A240 
       42.44        31.56        29.85        74.66        27.78        60.30 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 
       53.26        43.04         9.01       108.10        17.10        20.02 
TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G 
       15.02        17.75         4.50         0.10         0.07         0.07 
TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK 
       12.62        21.37         3.22         1.38        25.22        31.76 
TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 
       28.21       143.41       116.88        13.58        73.28         5.88 
TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-MO-A47R TCGA-PC-A5DK 
       22.62         6.25         0.10        75.48 

  AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE 
                         0.46                          0.07 
  AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE 
                        76.37                        143.41 
  AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE 
                        9.700                        21.995 
[1] "0.5 - 76.4 (9.7)"   "0.1 - 143.4 (22.0)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
  "AMP PEAK  1(1P32.1) MUTATED"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "AMP PEAK  1(1P32.1) MUTATED" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
  "AMP PEAK  1(1P32.1) MUTATED" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "AMP PEAK  1(1P32.1) MUTATED"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "AMP PEAK  1(1P32.1) MUTATED"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "AMP PEAK  1(1P32.1) MUTATED" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
  "AMP PEAK  1(1P32.1) MUTATED" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-PC-A5DK 
"AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
  "AMP PEAK  1(1P32.1) MUTATED"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "AMP PEAK  1(1P32.1) MUTATED" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
  "AMP PEAK  1(1P32.1) MUTATED" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "AMP PEAK  1(1P32.1) MUTATED"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "AMP PEAK  1(1P32.1) MUTATED"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "AMP PEAK  1(1P32.1) MUTATED" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
  "AMP PEAK  1(1P32.1) MUTATED" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-PC-A5DK 
"AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
  "AMP PEAK  1(1P32.1) MUTATED"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "AMP PEAK  1(1P32.1) MUTATED" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
  "AMP PEAK  1(1P32.1) MUTATED" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "AMP PEAK  1(1P32.1) MUTATED"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "AMP PEAK  1(1P32.1) MUTATED"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "AMP PEAK  1(1P32.1) MUTATED" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
  "AMP PEAK  1(1P32.1) MUTATED" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-PC-A5DK 
"AMP PEAK  1(1P32.1) WILD-TYPE" 
[1] "hr=" "2.4"
D1V2, continuous
D1V3, binary
                               cls
clus                             0  1
  AMP PEAK  1(1P32.1) MUTATED    8  9
  AMP PEAK  1(1P32.1) WILD-TYPE 20 20
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P32.1) MUTATED      8    9
  AMP PEAK  1(1P32.1) WILD-TYPE   20   20
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  FEMALE                           8                            20
  MALE                             9                            20

Clustering(2) Variable = AMP PEAK  2(1Q24.3) MUTATION ANALYSIS
D2V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  2(1Q24.3) MUTATED   13  8
  AMP PEAK  2(1Q24.3) WILD-TYPE 26 10
  AMP PEAK  2(1Q24.3) MUTATED AMP PEAK  2(1Q24.3) WILD-TYPE 
                           21                            36 
  AMP PEAK  2(1Q24.3) MUTATED AMP PEAK  2(1Q24.3) WILD-TYPE 
                            8                            10 
$`AMP PEAK  2(1Q24.3) MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A23U 
       14.04        12.85        18.51        42.44        31.56        76.37 
TCGA-DX-A240 TCGA-DX-A2J0 TCGA-DX-A3LT TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-FX-A2QS 
       60.30         9.70        23.08        17.75        42.77         0.46 
TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI 
        0.07        26.89         4.14        12.62        21.37         8.94 
TCGA-IF-A4AJ TCGA-IW-A3M6 TCGA-JV-A5VF 
       25.22        22.62         1.05 

$`AMP PEAK  2(1Q24.3) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L4 TCGA-DX-A23R 
        2.04        27.19        24.49        46.68        29.85        74.66 
TCGA-DX-A23T TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A2IZ TCGA-DX-A2J1 
        5.23        66.87         6.28        27.78         8.55        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 
       43.04         9.01        70.49       108.10        17.10        20.02 
TCGA-DX-A3U5 TCGA-DX-A3U8 TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-HB-A3YV TCGA-IE-A4EJ 
       15.02         4.50         0.10         0.07         4.54         3.22 
TCGA-IE-A4EK TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA 
        1.38        31.76        28.21       143.41       116.88        13.58 
TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-JV-A5VE TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
       73.28         5.88         6.25        11.70         0.10        75.48 

  AMP PEAK  2(1Q24.3) MUTATED AMP PEAK  2(1Q24.3) WILD-TYPE 
                         0.07                          0.07 
  AMP PEAK  2(1Q24.3) MUTATED AMP PEAK  2(1Q24.3) WILD-TYPE 
                        76.37                        143.41 
  AMP PEAK  2(1Q24.3) MUTATED AMP PEAK  2(1Q24.3) WILD-TYPE 
                        18.51                         18.56 
[1] "0.1 - 76.4 (18.5)"  "0.1 - 143.4 (18.6)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
  "AMP PEAK  2(1Q24.3) MUTATED"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "AMP PEAK  2(1Q24.3) MUTATED"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "AMP PEAK  2(1Q24.3) MUTATED"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-PC-A5DK 
"AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
  "AMP PEAK  2(1Q24.3) MUTATED"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "AMP PEAK  2(1Q24.3) MUTATED"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "AMP PEAK  2(1Q24.3) MUTATED"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-PC-A5DK 
"AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
  "AMP PEAK  2(1Q24.3) MUTATED"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "AMP PEAK  2(1Q24.3) MUTATED"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "AMP PEAK  2(1Q24.3) MUTATED"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-PC-A5DK 
"AMP PEAK  2(1Q24.3) WILD-TYPE" 
[1] "hr=" "1.5"
D2V2, continuous
D2V3, binary
                               cls
clus                             0  1
  AMP PEAK  2(1Q24.3) MUTATED   11 10
  AMP PEAK  2(1Q24.3) WILD-TYPE 17 19
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q24.3) MUTATED     11   10
  AMP PEAK  2(1Q24.3) WILD-TYPE   17   19
        clus
vv       AMP PEAK  2(1Q24.3) MUTATED AMP PEAK  2(1Q24.3) WILD-TYPE
  FEMALE                          11                            17
  MALE                            10                            19

Clustering(3) Variable = AMP PEAK  3(5P15.33) MUTATION ANALYSIS
D3V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  3(5P15.33) MUTATED   15  9
  AMP PEAK  3(5P15.33) WILD-TYPE 24  9
  AMP PEAK  3(5P15.33) MUTATED AMP PEAK  3(5P15.33) WILD-TYPE 
                            24                             33 
  AMP PEAK  3(5P15.33) MUTATED AMP PEAK  3(5P15.33) WILD-TYPE 
                             9                              9 
$`AMP PEAK  3(5P15.33) MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 
       14.04         2.04        27.19        24.49        18.51        46.68 
TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A3LS TCGA-DX-A3LY 
       42.44        31.56         8.55         9.70         9.01        17.10 
TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-HB-A2OT TCGA-HB-A43Z TCGA-IE-A4EI 
       42.77         4.50         0.46        26.89         4.14         8.94 
TCGA-IE-A4EJ TCGA-IF-A4AJ TCGA-IS-A3K6 TCGA-IW-A3M5 TCGA-JV-A5VF TCGA-MO-A47R 
        3.22        25.22        28.21         5.88         1.05         0.10 

$`AMP PEAK  3(5P15.33) WILD-TYPE`
TCGA-DX-A1KY TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V 
       12.85        29.85        74.66         5.23        76.37        66.87 
TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LT 
        6.28        27.78        60.30        53.26        43.04        23.08 
TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-FX-A3NJ 
       70.49       108.10        20.02        15.02        17.75         0.10 
TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EK 
        0.07         0.07         4.54        12.62        21.37         1.38 
TCGA-IF-A4AK TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M6 
       31.76       143.41       116.88        13.58        73.28        22.62 
TCGA-JV-A5VE TCGA-KF-A41W TCGA-PC-A5DK 
        6.25        11.70        75.48 

  AMP PEAK  3(5P15.33) MUTATED AMP PEAK  3(5P15.33) WILD-TYPE 
                          0.10                           0.07 
  AMP PEAK  3(5P15.33) MUTATED AMP PEAK  3(5P15.33) WILD-TYPE 
                         46.68                         143.41 
  AMP PEAK  3(5P15.33) MUTATED AMP PEAK  3(5P15.33) WILD-TYPE 
                         11.87                          22.62 
[1] "0.1 - 46.7 (11.9)"  "0.1 - 143.4 (22.6)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "AMP PEAK  3(5P15.33) MUTATED"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "AMP PEAK  3(5P15.33) MUTATED" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "AMP PEAK  3(5P15.33) MUTATED"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "AMP PEAK  3(5P15.33) MUTATED"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
  "AMP PEAK  3(5P15.33) MUTATED" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"AMP PEAK  3(5P15.33) WILD-TYPE" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"AMP PEAK  3(5P15.33) WILD-TYPE" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"AMP PEAK  3(5P15.33) WILD-TYPE" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"AMP PEAK  3(5P15.33) WILD-TYPE"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "AMP PEAK  3(5P15.33) MUTATED" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"AMP PEAK  3(5P15.33) WILD-TYPE"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"AMP PEAK  3(5P15.33) WILD-TYPE" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"AMP PEAK  3(5P15.33) WILD-TYPE"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"AMP PEAK  3(5P15.33) WILD-TYPE" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"AMP PEAK  3(5P15.33) WILD-TYPE"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
  "AMP PEAK  3(5P15.33) MUTATED"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"AMP PEAK  3(5P15.33) WILD-TYPE" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"AMP PEAK  3(5P15.33) WILD-TYPE"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"AMP PEAK  3(5P15.33) WILD-TYPE"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"AMP PEAK  3(5P15.33) WILD-TYPE" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "AMP PEAK  3(5P15.33) MUTATED"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"AMP PEAK  3(5P15.33) WILD-TYPE"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"AMP PEAK  3(5P15.33) WILD-TYPE"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"AMP PEAK  3(5P15.33) WILD-TYPE" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"AMP PEAK  3(5P15.33) WILD-TYPE" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "AMP PEAK  3(5P15.33) MUTATED" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"AMP PEAK  3(5P15.33) WILD-TYPE"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
"AMP PEAK  3(5P15.33) WILD-TYPE"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-PC-A5DK 
"AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "AMP PEAK  3(5P15.33) MUTATED"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "AMP PEAK  3(5P15.33) MUTATED" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "AMP PEAK  3(5P15.33) MUTATED"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "AMP PEAK  3(5P15.33) MUTATED"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
  "AMP PEAK  3(5P15.33) MUTATED" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"AMP PEAK  3(5P15.33) WILD-TYPE" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"AMP PEAK  3(5P15.33) WILD-TYPE" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"AMP PEAK  3(5P15.33) WILD-TYPE" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"AMP PEAK  3(5P15.33) WILD-TYPE"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "AMP PEAK  3(5P15.33) MUTATED" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"AMP PEAK  3(5P15.33) WILD-TYPE"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"AMP PEAK  3(5P15.33) WILD-TYPE" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"AMP PEAK  3(5P15.33) WILD-TYPE"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"AMP PEAK  3(5P15.33) WILD-TYPE" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"AMP PEAK  3(5P15.33) WILD-TYPE"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
  "AMP PEAK  3(5P15.33) MUTATED"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"AMP PEAK  3(5P15.33) WILD-TYPE" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"AMP PEAK  3(5P15.33) WILD-TYPE"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"AMP PEAK  3(5P15.33) WILD-TYPE"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"AMP PEAK  3(5P15.33) WILD-TYPE" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "AMP PEAK  3(5P15.33) MUTATED"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"AMP PEAK  3(5P15.33) WILD-TYPE"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"AMP PEAK  3(5P15.33) WILD-TYPE"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"AMP PEAK  3(5P15.33) WILD-TYPE" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"AMP PEAK  3(5P15.33) WILD-TYPE" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "AMP PEAK  3(5P15.33) MUTATED" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"AMP PEAK  3(5P15.33) WILD-TYPE"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
"AMP PEAK  3(5P15.33) WILD-TYPE"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-PC-A5DK 
"AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "AMP PEAK  3(5P15.33) MUTATED"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "AMP PEAK  3(5P15.33) MUTATED" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "AMP PEAK  3(5P15.33) MUTATED"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "AMP PEAK  3(5P15.33) MUTATED"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
  "AMP PEAK  3(5P15.33) MUTATED" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"AMP PEAK  3(5P15.33) WILD-TYPE" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"AMP PEAK  3(5P15.33) WILD-TYPE" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"AMP PEAK  3(5P15.33) WILD-TYPE" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"AMP PEAK  3(5P15.33) WILD-TYPE"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "AMP PEAK  3(5P15.33) MUTATED" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"AMP PEAK  3(5P15.33) WILD-TYPE"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"AMP PEAK  3(5P15.33) WILD-TYPE" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"AMP PEAK  3(5P15.33) WILD-TYPE"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"AMP PEAK  3(5P15.33) WILD-TYPE" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"AMP PEAK  3(5P15.33) WILD-TYPE"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
  "AMP PEAK  3(5P15.33) MUTATED"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"AMP PEAK  3(5P15.33) WILD-TYPE" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"AMP PEAK  3(5P15.33) WILD-TYPE"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"AMP PEAK  3(5P15.33) WILD-TYPE"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"AMP PEAK  3(5P15.33) WILD-TYPE" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "AMP PEAK  3(5P15.33) MUTATED"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"AMP PEAK  3(5P15.33) WILD-TYPE"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"AMP PEAK  3(5P15.33) WILD-TYPE"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"AMP PEAK  3(5P15.33) WILD-TYPE" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"AMP PEAK  3(5P15.33) WILD-TYPE" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "AMP PEAK  3(5P15.33) MUTATED" "AMP PEAK  3(5P15.33) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"AMP PEAK  3(5P15.33) WILD-TYPE"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
"AMP PEAK  3(5P15.33) WILD-TYPE"   "AMP PEAK  3(5P15.33) MUTATED" 
                    TCGA-PC-A5DK 
"AMP PEAK  3(5P15.33) WILD-TYPE" 
[1] "hr=" "2.4"
D3V2, continuous
D3V3, binary
                                cls
clus                              0  1
  AMP PEAK  3(5P15.33) MUTATED   12 12
  AMP PEAK  3(5P15.33) WILD-TYPE 16 17
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  3(5P15.33) MUTATED     12   12
  AMP PEAK  3(5P15.33) WILD-TYPE   16   17
        clus
vv       AMP PEAK  3(5P15.33) MUTATED AMP PEAK  3(5P15.33) WILD-TYPE
  FEMALE                           12                             16
  MALE                             12                             17

Clustering(4) Variable = AMP PEAK  4(6P21.1) MUTATION ANALYSIS
D4V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  4(6P21.1) MUTATED    9  5
  AMP PEAK  4(6P21.1) WILD-TYPE 30 13
  AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE 
                           14                            43 
  AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE 
                            5                            13 
$`AMP PEAK  4(6P21.1) MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1L2 TCGA-DX-A23Y TCGA-DX-A3LT TCGA-DX-A3LU 
        2.04        27.19        42.44         6.28        23.08        70.49 
TCGA-FX-A2QS TCGA-HB-A2OT TCGA-HB-A3YV TCGA-IE-A4EJ TCGA-IS-A3KA TCGA-IW-A3M5 
        0.46        26.89         4.54         3.22        13.58         5.88 
TCGA-JV-A5VF TCGA-KF-A41W 
        1.05        11.70 

$`AMP PEAK  4(6P21.1) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L3 
       14.04        12.85        24.49        18.51        46.68        31.56 
TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z 
       29.85        74.66         5.23        76.37        66.87        27.78 
TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS 
       60.30         8.55         9.70        53.26        43.04         9.01 
TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 
      108.10        17.10        20.02        15.02        17.75        42.77 
TCGA-DX-A3U8 TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A43Z TCGA-HB-A5W3 
        4.50         0.10         0.07         0.07         4.14        12.62 
TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 
       21.37         8.94         1.38        25.22        31.76        28.21 
TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-MO-A47R 
      143.41       116.88        73.28        22.62         6.25         0.10 
TCGA-PC-A5DK 
       75.48 

  AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE 
                         0.46                          0.07 
  AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE 
                        70.49                        143.41 
  AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE 
                         8.99                         21.37 
[1] "0.5 - 70.5 (9.0)"   "0.1 - 143.4 (21.4)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-PC-A5DK 
"AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-PC-A5DK 
"AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-PC-A5DK 
"AMP PEAK  4(6P21.1) WILD-TYPE" 
[1] "hr=" "2"  
D4V2, continuous
D4V3, binary
                               cls
clus                             0  1
  AMP PEAK  4(6P21.1) MUTATED    8  6
  AMP PEAK  4(6P21.1) WILD-TYPE 20 23
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(6P21.1) MUTATED      8    6
  AMP PEAK  4(6P21.1) WILD-TYPE   20   23
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  FEMALE                           8                            20
  MALE                             6                            23

Clustering(5) Variable = AMP PEAK  5(6Q24.3) MUTATION ANALYSIS
D5V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  5(6Q24.3) MUTATED   15  7
  AMP PEAK  5(6Q24.3) WILD-TYPE 24 11
  AMP PEAK  5(6Q24.3) MUTATED AMP PEAK  5(6Q24.3) WILD-TYPE 
                           22                            35 
  AMP PEAK  5(6Q24.3) MUTATED AMP PEAK  5(6Q24.3) WILD-TYPE 
                            7                            11 
$`AMP PEAK  5(6Q24.3) MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L4 TCGA-DX-A23T 
        2.04        27.19        24.49        18.51        29.85         5.23 
TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A2J1 TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LY 
        6.28        27.78        53.26        23.08        70.49        17.10 
TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z 
       20.02        15.02        17.75        26.89         4.54         4.14 
TCGA-IE-A4EJ TCGA-IS-A3K7 TCGA-IW-A3M5 TCGA-JV-A5VF 
        3.22       143.41         5.88         1.05 

$`AMP PEAK  5(6Q24.3) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KY TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A23R 
       14.04        12.85        46.68        42.44        31.56        74.66 
TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J4 
       76.37        66.87        60.30         8.55         9.70        43.04 
TCGA-DX-A3LS TCGA-DX-A3LW TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ 
        9.01       108.10        42.77         4.50         0.46         0.10 
TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EK 
        0.07         0.07        12.62        21.37         8.94         1.38 
TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 
       25.22        31.76        28.21       116.88        13.58        73.28 
TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
       22.62         6.25        11.70         0.10        75.48 

  AMP PEAK  5(6Q24.3) MUTATED AMP PEAK  5(6Q24.3) WILD-TYPE 
                         1.05                          0.07 
  AMP PEAK  5(6Q24.3) MUTATED AMP PEAK  5(6Q24.3) WILD-TYPE 
                       143.41                        116.88 
  AMP PEAK  5(6Q24.3) MUTATED AMP PEAK  5(6Q24.3) WILD-TYPE 
                        18.13                         21.37 
[1] "1.1 - 143.4 (18.1)" "0.1 - 116.9 (21.4)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK  5(6Q24.3) WILD-TYPE"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "AMP PEAK  5(6Q24.3) MUTATED" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "AMP PEAK  5(6Q24.3) MUTATED"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK  5(6Q24.3) WILD-TYPE"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"AMP PEAK  5(6Q24.3) WILD-TYPE"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "AMP PEAK  5(6Q24.3) MUTATED"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"AMP PEAK  5(6Q24.3) WILD-TYPE"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "AMP PEAK  5(6Q24.3) MUTATED"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK  5(6Q24.3) WILD-TYPE"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "AMP PEAK  5(6Q24.3) MUTATED"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
  "AMP PEAK  5(6Q24.3) MUTATED" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK  5(6Q24.3) WILD-TYPE"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "AMP PEAK  5(6Q24.3) MUTATED"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"AMP PEAK  5(6Q24.3) WILD-TYPE"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "AMP PEAK  5(6Q24.3) MUTATED" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "AMP PEAK  5(6Q24.3) MUTATED" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  5(6Q24.3) WILD-TYPE"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-PC-A5DK 
"AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK  5(6Q24.3) WILD-TYPE"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "AMP PEAK  5(6Q24.3) MUTATED" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "AMP PEAK  5(6Q24.3) MUTATED"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK  5(6Q24.3) WILD-TYPE"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"AMP PEAK  5(6Q24.3) WILD-TYPE"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "AMP PEAK  5(6Q24.3) MUTATED"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"AMP PEAK  5(6Q24.3) WILD-TYPE"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "AMP PEAK  5(6Q24.3) MUTATED"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK  5(6Q24.3) WILD-TYPE"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "AMP PEAK  5(6Q24.3) MUTATED"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
  "AMP PEAK  5(6Q24.3) MUTATED" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK  5(6Q24.3) WILD-TYPE"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "AMP PEAK  5(6Q24.3) MUTATED"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"AMP PEAK  5(6Q24.3) WILD-TYPE"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "AMP PEAK  5(6Q24.3) MUTATED" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "AMP PEAK  5(6Q24.3) MUTATED" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  5(6Q24.3) WILD-TYPE"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-PC-A5DK 
"AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK  5(6Q24.3) WILD-TYPE"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "AMP PEAK  5(6Q24.3) MUTATED" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "AMP PEAK  5(6Q24.3) MUTATED"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK  5(6Q24.3) WILD-TYPE"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"AMP PEAK  5(6Q24.3) WILD-TYPE"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "AMP PEAK  5(6Q24.3) MUTATED"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"AMP PEAK  5(6Q24.3) WILD-TYPE"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "AMP PEAK  5(6Q24.3) MUTATED"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK  5(6Q24.3) WILD-TYPE"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "AMP PEAK  5(6Q24.3) MUTATED"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
  "AMP PEAK  5(6Q24.3) MUTATED" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK  5(6Q24.3) WILD-TYPE"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "AMP PEAK  5(6Q24.3) MUTATED"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"AMP PEAK  5(6Q24.3) WILD-TYPE"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "AMP PEAK  5(6Q24.3) MUTATED" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "AMP PEAK  5(6Q24.3) MUTATED" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  5(6Q24.3) WILD-TYPE"   "AMP PEAK  5(6Q24.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"AMP PEAK  5(6Q24.3) WILD-TYPE" "AMP PEAK  5(6Q24.3) WILD-TYPE" 
                   TCGA-PC-A5DK 
"AMP PEAK  5(6Q24.3) WILD-TYPE" 
[1] "hr=" "1.2"
D5V2, continuous
D5V3, binary
                               cls
clus                             0  1
  AMP PEAK  5(6Q24.3) MUTATED    9 13
  AMP PEAK  5(6Q24.3) WILD-TYPE 19 16
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(6Q24.3) MUTATED      9   13
  AMP PEAK  5(6Q24.3) WILD-TYPE   19   16
        clus
vv       AMP PEAK  5(6Q24.3) MUTATED AMP PEAK  5(6Q24.3) WILD-TYPE
  FEMALE                           9                            19
  MALE                            13                            16

Clustering(6) Variable = AMP PEAK  6(7P21.3) MUTATION ANALYSIS
D6V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  6(7P21.3) MUTATED   14  6
  AMP PEAK  6(7P21.3) WILD-TYPE 25 12
  AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE 
                           20                            37 
  AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE 
                            6                            12 
$`AMP PEAK  6(7P21.3) MUTATED`
TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L2 TCGA-DX-A23R 
       27.19        12.85        24.49        18.51        42.44        74.66 
TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A3LT TCGA-DX-A3LW TCGA-DX-A3M1 TCGA-DX-A3U6 
        5.23        76.37        23.08       108.10        20.02        17.75 
TCGA-FX-A2QS TCGA-HB-A2OT TCGA-HB-A3YV TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IS-A3K7 
        0.46        26.89         4.54         8.94         3.22       143.41 
TCGA-IW-A3M5 TCGA-MO-A47R 
        5.88         0.10 

$`AMP PEAK  6(7P21.3) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23V 
       14.04         2.04        46.68        31.56        29.85        66.87 
TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 
        6.28        27.78        60.30         8.55         9.70        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU TCGA-DX-A3LY TCGA-DX-A3U5 TCGA-DX-A3U7 
       43.04         9.01        70.49        17.10        15.02        42.77 
TCGA-DX-A3U8 TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A43Z TCGA-HB-A5W3 
        4.50         0.10         0.07         0.07         4.14        12.62 
TCGA-IE-A4EH TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K8 
       21.37         1.38        25.22        31.76        28.21       116.88 
TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W 
       13.58        73.28        22.62         6.25         1.05        11.70 
TCGA-PC-A5DK 
       75.48 

  AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE 
                         0.10                          0.07 
  AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE 
                       143.41                        116.88 
  AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE 
                       19.265                        17.100 
[1] "0.1 - 143.4 (19.3)" "0.1 - 116.9 (17.1)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "AMP PEAK  6(7P21.3) MUTATED"   "AMP PEAK  6(7P21.3) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "AMP PEAK  6(7P21.3) MUTATED"   "AMP PEAK  6(7P21.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  6(7P21.3) WILD-TYPE"   "AMP PEAK  6(7P21.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "AMP PEAK  6(7P21.3) MUTATED"   "AMP PEAK  6(7P21.3) MUTATED" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
  "AMP PEAK  6(7P21.3) MUTATED" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "AMP PEAK  6(7P21.3) MUTATED" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "AMP PEAK  6(7P21.3) MUTATED" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "AMP PEAK  6(7P21.3) MUTATED" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
  "AMP PEAK  6(7P21.3) MUTATED" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"AMP PEAK  6(7P21.3) WILD-TYPE"   "AMP PEAK  6(7P21.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK  6(7P21.3) WILD-TYPE"   "AMP PEAK  6(7P21.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "AMP PEAK  6(7P21.3) MUTATED" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "AMP PEAK  6(7P21.3) MUTATED"   "AMP PEAK  6(7P21.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "AMP PEAK  6(7P21.3) MUTATED" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "AMP PEAK  6(7P21.3) MUTATED" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"AMP PEAK  6(7P21.3) WILD-TYPE"   "AMP PEAK  6(7P21.3) MUTATED" 
                   TCGA-PC-A5DK 
"AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "AMP PEAK  6(7P21.3) MUTATED"   "AMP PEAK  6(7P21.3) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "AMP PEAK  6(7P21.3) MUTATED"   "AMP PEAK  6(7P21.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  6(7P21.3) WILD-TYPE"   "AMP PEAK  6(7P21.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "AMP PEAK  6(7P21.3) MUTATED"   "AMP PEAK  6(7P21.3) MUTATED" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
  "AMP PEAK  6(7P21.3) MUTATED" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "AMP PEAK  6(7P21.3) MUTATED" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "AMP PEAK  6(7P21.3) MUTATED" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "AMP PEAK  6(7P21.3) MUTATED" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
  "AMP PEAK  6(7P21.3) MUTATED" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"AMP PEAK  6(7P21.3) WILD-TYPE"   "AMP PEAK  6(7P21.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK  6(7P21.3) WILD-TYPE"   "AMP PEAK  6(7P21.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "AMP PEAK  6(7P21.3) MUTATED" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "AMP PEAK  6(7P21.3) MUTATED"   "AMP PEAK  6(7P21.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "AMP PEAK  6(7P21.3) MUTATED" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "AMP PEAK  6(7P21.3) MUTATED" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"AMP PEAK  6(7P21.3) WILD-TYPE"   "AMP PEAK  6(7P21.3) MUTATED" 
                   TCGA-PC-A5DK 
"AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "AMP PEAK  6(7P21.3) MUTATED"   "AMP PEAK  6(7P21.3) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "AMP PEAK  6(7P21.3) MUTATED"   "AMP PEAK  6(7P21.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  6(7P21.3) WILD-TYPE"   "AMP PEAK  6(7P21.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "AMP PEAK  6(7P21.3) MUTATED"   "AMP PEAK  6(7P21.3) MUTATED" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
  "AMP PEAK  6(7P21.3) MUTATED" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "AMP PEAK  6(7P21.3) MUTATED" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "AMP PEAK  6(7P21.3) MUTATED" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "AMP PEAK  6(7P21.3) MUTATED" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
  "AMP PEAK  6(7P21.3) MUTATED" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"AMP PEAK  6(7P21.3) WILD-TYPE"   "AMP PEAK  6(7P21.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK  6(7P21.3) WILD-TYPE"   "AMP PEAK  6(7P21.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "AMP PEAK  6(7P21.3) MUTATED" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "AMP PEAK  6(7P21.3) MUTATED"   "AMP PEAK  6(7P21.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "AMP PEAK  6(7P21.3) MUTATED" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "AMP PEAK  6(7P21.3) MUTATED" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  6(7P21.3) WILD-TYPE" "AMP PEAK  6(7P21.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"AMP PEAK  6(7P21.3) WILD-TYPE"   "AMP PEAK  6(7P21.3) MUTATED" 
                   TCGA-PC-A5DK 
"AMP PEAK  6(7P21.3) WILD-TYPE" 
[1] "hr=" "1.2"
D6V2, continuous
D6V3, binary
                               cls
clus                             0  1
  AMP PEAK  6(7P21.3) MUTATED   11  9
  AMP PEAK  6(7P21.3) WILD-TYPE 17 20
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(7P21.3) MUTATED     11    9
  AMP PEAK  6(7P21.3) WILD-TYPE   17   20
        clus
vv       AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE
  FEMALE                          11                            17
  MALE                             9                            20

Clustering(7) Variable = AMP PEAK  7(11Q22.2) MUTATION ANALYSIS
D7V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  7(11Q22.2) MUTATED    9  2
  AMP PEAK  7(11Q22.2) WILD-TYPE 30 16
  AMP PEAK  7(11Q22.2) MUTATED AMP PEAK  7(11Q22.2) WILD-TYPE 
                            11                             46 
  AMP PEAK  7(11Q22.2) MUTATED AMP PEAK  7(11Q22.2) WILD-TYPE 
                             2                             16 
$`AMP PEAK  7(11Q22.2) MUTATED`
TCGA-DX-A1KX TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A23T TCGA-DX-A23Z TCGA-DX-A2J1 
       27.19        46.68        42.44         5.23        27.78        53.26 
TCGA-DX-A3LT TCGA-DX-A3M1 TCGA-HB-A43Z TCGA-IE-A4EH TCGA-KF-A41W 
       23.08        20.02         4.14        21.37        11.70 

$`AMP PEAK  7(11Q22.2) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L3 
       14.04         2.04        12.85        24.49        18.51        31.56 
TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A240 
       29.85        74.66        76.37        66.87         6.28        60.30 
TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU TCGA-DX-A3LW 
        8.55         9.70        43.04         9.01        70.49       108.10 
TCGA-DX-A3LY TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS 
       17.10        15.02        17.75        42.77         4.50         0.46 
TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A5W3 
        0.10         0.07         0.07        26.89         4.54        12.62 
TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 
        8.94         3.22         1.38        25.22        31.76        28.21 
TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 
      143.41       116.88        13.58        73.28         5.88        22.62 
TCGA-JV-A5VE TCGA-JV-A5VF TCGA-MO-A47R TCGA-PC-A5DK 
        6.25         1.05         0.10        75.48 

  AMP PEAK  7(11Q22.2) MUTATED AMP PEAK  7(11Q22.2) WILD-TYPE 
                          4.14                           0.07 
  AMP PEAK  7(11Q22.2) MUTATED AMP PEAK  7(11Q22.2) WILD-TYPE 
                         53.26                         143.41 
  AMP PEAK  7(11Q22.2) MUTATED AMP PEAK  7(11Q22.2) WILD-TYPE 
                         23.08                          16.06 
[1] "4.1 - 53.3 (23.1)"  "0.1 - 143.4 (16.1)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "AMP PEAK  7(11Q22.2) MUTATED" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "AMP PEAK  7(11Q22.2) MUTATED"   "AMP PEAK  7(11Q22.2) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"AMP PEAK  7(11Q22.2) WILD-TYPE"   "AMP PEAK  7(11Q22.2) MUTATED" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"AMP PEAK  7(11Q22.2) WILD-TYPE"   "AMP PEAK  7(11Q22.2) MUTATED" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"AMP PEAK  7(11Q22.2) WILD-TYPE"   "AMP PEAK  7(11Q22.2) MUTATED" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "AMP PEAK  7(11Q22.2) MUTATED" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "AMP PEAK  7(11Q22.2) MUTATED" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"AMP PEAK  7(11Q22.2) WILD-TYPE"   "AMP PEAK  7(11Q22.2) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"AMP PEAK  7(11Q22.2) WILD-TYPE"   "AMP PEAK  7(11Q22.2) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "AMP PEAK  7(11Q22.2) MUTATED" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-PC-A5DK 
"AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "AMP PEAK  7(11Q22.2) MUTATED" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "AMP PEAK  7(11Q22.2) MUTATED"   "AMP PEAK  7(11Q22.2) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"AMP PEAK  7(11Q22.2) WILD-TYPE"   "AMP PEAK  7(11Q22.2) MUTATED" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"AMP PEAK  7(11Q22.2) WILD-TYPE"   "AMP PEAK  7(11Q22.2) MUTATED" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"AMP PEAK  7(11Q22.2) WILD-TYPE"   "AMP PEAK  7(11Q22.2) MUTATED" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "AMP PEAK  7(11Q22.2) MUTATED" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "AMP PEAK  7(11Q22.2) MUTATED" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"AMP PEAK  7(11Q22.2) WILD-TYPE"   "AMP PEAK  7(11Q22.2) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"AMP PEAK  7(11Q22.2) WILD-TYPE"   "AMP PEAK  7(11Q22.2) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "AMP PEAK  7(11Q22.2) MUTATED" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-PC-A5DK 
"AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "AMP PEAK  7(11Q22.2) MUTATED" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "AMP PEAK  7(11Q22.2) MUTATED"   "AMP PEAK  7(11Q22.2) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"AMP PEAK  7(11Q22.2) WILD-TYPE"   "AMP PEAK  7(11Q22.2) MUTATED" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"AMP PEAK  7(11Q22.2) WILD-TYPE"   "AMP PEAK  7(11Q22.2) MUTATED" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"AMP PEAK  7(11Q22.2) WILD-TYPE"   "AMP PEAK  7(11Q22.2) MUTATED" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "AMP PEAK  7(11Q22.2) MUTATED" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "AMP PEAK  7(11Q22.2) MUTATED" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"AMP PEAK  7(11Q22.2) WILD-TYPE"   "AMP PEAK  7(11Q22.2) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"AMP PEAK  7(11Q22.2) WILD-TYPE"   "AMP PEAK  7(11Q22.2) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"AMP PEAK  7(11Q22.2) WILD-TYPE" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "AMP PEAK  7(11Q22.2) MUTATED" "AMP PEAK  7(11Q22.2) WILD-TYPE" 
                    TCGA-PC-A5DK 
"AMP PEAK  7(11Q22.2) WILD-TYPE" 
[1] "hr=" "2"  
D7V2, continuous
D7V3, binary
                                cls
clus                              0  1
  AMP PEAK  7(11Q22.2) MUTATED    5  6
  AMP PEAK  7(11Q22.2) WILD-TYPE 23 23
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(11Q22.2) MUTATED      5    6
  AMP PEAK  7(11Q22.2) WILD-TYPE   23   23
        clus
vv       AMP PEAK  7(11Q22.2) MUTATED AMP PEAK  7(11Q22.2) WILD-TYPE
  FEMALE                            5                             23
  MALE                              6                             23

Clustering(8) Variable = AMP PEAK  8(12P12.1) MUTATION ANALYSIS
D8V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  8(12P12.1) MUTATED    8  6
  AMP PEAK  8(12P12.1) WILD-TYPE 31 12
  AMP PEAK  8(12P12.1) MUTATED AMP PEAK  8(12P12.1) WILD-TYPE 
                            14                             43 
  AMP PEAK  8(12P12.1) MUTATED AMP PEAK  8(12P12.1) WILD-TYPE 
                             6                             12 
$`AMP PEAK  8(12P12.1) MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A23R TCGA-DX-A3LS 
       14.04        27.19        12.85        24.49        74.66         9.01 
TCGA-DX-A3LY TCGA-DX-A3U7 TCGA-HB-A3YV TCGA-IE-A4EJ TCGA-IF-A4AJ TCGA-IW-A3M5 
       17.10        42.77         4.54         3.22        25.22         5.88 
TCGA-JV-A5VE TCGA-MO-A47R 
        6.25         0.10 

$`AMP PEAK  8(12P12.1) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 
        2.04        18.51        46.68        42.44        31.56        29.85 
TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 
        5.23        76.37        66.87         6.28        27.78        60.30 
TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LT TCGA-DX-A3LU 
        8.55         9.70        53.26        43.04        23.08        70.49 
TCGA-DX-A3LW TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A2QS 
      108.10        20.02        15.02        17.75         4.50         0.46 
TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A43Z TCGA-HB-A5W3 
        0.10         0.07         0.07        26.89         4.14        12.62 
TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 
       21.37         8.94         1.38        31.76        28.21       143.41 
TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-JV-A5VF TCGA-KF-A41W 
      116.88        13.58        73.28        22.62         1.05        11.70 
TCGA-PC-A5DK 
       75.48 

  AMP PEAK  8(12P12.1) MUTATED AMP PEAK  8(12P12.1) WILD-TYPE 
                          0.10                           0.07 
  AMP PEAK  8(12P12.1) MUTATED AMP PEAK  8(12P12.1) WILD-TYPE 
                         74.66                         143.41 
  AMP PEAK  8(12P12.1) MUTATED AMP PEAK  8(12P12.1) WILD-TYPE 
                        13.445                         21.370 
[1] "0.1 - 74.7 (13.4)"  "0.1 - 143.4 (21.4)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "AMP PEAK  8(12P12.1) MUTATED" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "AMP PEAK  8(12P12.1) MUTATED"   "AMP PEAK  8(12P12.1) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "AMP PEAK  8(12P12.1) MUTATED" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "AMP PEAK  8(12P12.1) MUTATED" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"AMP PEAK  8(12P12.1) WILD-TYPE"   "AMP PEAK  8(12P12.1) MUTATED" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"AMP PEAK  8(12P12.1) WILD-TYPE"   "AMP PEAK  8(12P12.1) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"AMP PEAK  8(12P12.1) WILD-TYPE"   "AMP PEAK  8(12P12.1) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "AMP PEAK  8(12P12.1) MUTATED" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"AMP PEAK  8(12P12.1) WILD-TYPE"   "AMP PEAK  8(12P12.1) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"AMP PEAK  8(12P12.1) WILD-TYPE"   "AMP PEAK  8(12P12.1) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "AMP PEAK  8(12P12.1) MUTATED" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "AMP PEAK  8(12P12.1) MUTATED" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
"AMP PEAK  8(12P12.1) WILD-TYPE"   "AMP PEAK  8(12P12.1) MUTATED" 
                    TCGA-PC-A5DK 
"AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "AMP PEAK  8(12P12.1) MUTATED" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "AMP PEAK  8(12P12.1) MUTATED"   "AMP PEAK  8(12P12.1) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "AMP PEAK  8(12P12.1) MUTATED" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "AMP PEAK  8(12P12.1) MUTATED" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"AMP PEAK  8(12P12.1) WILD-TYPE"   "AMP PEAK  8(12P12.1) MUTATED" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"AMP PEAK  8(12P12.1) WILD-TYPE"   "AMP PEAK  8(12P12.1) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"AMP PEAK  8(12P12.1) WILD-TYPE"   "AMP PEAK  8(12P12.1) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "AMP PEAK  8(12P12.1) MUTATED" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"AMP PEAK  8(12P12.1) WILD-TYPE"   "AMP PEAK  8(12P12.1) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"AMP PEAK  8(12P12.1) WILD-TYPE"   "AMP PEAK  8(12P12.1) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "AMP PEAK  8(12P12.1) MUTATED" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "AMP PEAK  8(12P12.1) MUTATED" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
"AMP PEAK  8(12P12.1) WILD-TYPE"   "AMP PEAK  8(12P12.1) MUTATED" 
                    TCGA-PC-A5DK 
"AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "AMP PEAK  8(12P12.1) MUTATED" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "AMP PEAK  8(12P12.1) MUTATED"   "AMP PEAK  8(12P12.1) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "AMP PEAK  8(12P12.1) MUTATED" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "AMP PEAK  8(12P12.1) MUTATED" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"AMP PEAK  8(12P12.1) WILD-TYPE"   "AMP PEAK  8(12P12.1) MUTATED" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"AMP PEAK  8(12P12.1) WILD-TYPE"   "AMP PEAK  8(12P12.1) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"AMP PEAK  8(12P12.1) WILD-TYPE"   "AMP PEAK  8(12P12.1) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "AMP PEAK  8(12P12.1) MUTATED" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"AMP PEAK  8(12P12.1) WILD-TYPE"   "AMP PEAK  8(12P12.1) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"AMP PEAK  8(12P12.1) WILD-TYPE"   "AMP PEAK  8(12P12.1) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"AMP PEAK  8(12P12.1) WILD-TYPE" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "AMP PEAK  8(12P12.1) MUTATED" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "AMP PEAK  8(12P12.1) MUTATED" "AMP PEAK  8(12P12.1) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
"AMP PEAK  8(12P12.1) WILD-TYPE"   "AMP PEAK  8(12P12.1) MUTATED" 
                    TCGA-PC-A5DK 
"AMP PEAK  8(12P12.1) WILD-TYPE" 
[1] "hr=" "2.2"
D8V2, continuous
D8V3, binary
                                cls
clus                              0  1
  AMP PEAK  8(12P12.1) MUTATED    7  7
  AMP PEAK  8(12P12.1) WILD-TYPE 21 22
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(12P12.1) MUTATED      7    7
  AMP PEAK  8(12P12.1) WILD-TYPE   21   22
        clus
vv       AMP PEAK  8(12P12.1) MUTATED AMP PEAK  8(12P12.1) WILD-TYPE
  FEMALE                            7                             21
  MALE                              7                             22

Clustering(9) Variable = AMP PEAK  9(12Q15) MUTATION ANALYSIS
D9V1, survival
                              sevent
clus2                           0  1
  AMP PEAK  9(12Q15) MUTATED   22 10
  AMP PEAK  9(12Q15) WILD-TYPE 17  8
  AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE 
                          32                           25 
  AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE 
                          10                            8 
$`AMP PEAK  9(12Q15) MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 
       14.04         2.04        12.85        24.49        18.51        46.68 
TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23V 
       42.44        31.56        29.85        74.66         5.23        66.87 
TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 
        6.28        27.78        60.30         8.55         9.70        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY 
       43.04         9.01        23.08        70.49       108.10        17.10 
TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-FX-A2QS TCGA-HB-A3YV TCGA-IE-A4EJ 
       20.02        15.02        17.75         0.46         4.54         3.22 
TCGA-KF-A41W TCGA-MO-A47R 
       11.70         0.10 

$`AMP PEAK  9(12Q15) WILD-TYPE`
TCGA-DX-A1KX TCGA-DX-A23U TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A3NJ TCGA-FX-A3RE 
       27.19        76.37        42.77         4.50         0.10         0.07 
TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI 
        0.07        26.89         4.14        12.62        21.37         8.94 
TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 
        1.38        25.22        31.76        28.21       143.41       116.88 
TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF 
       13.58        73.28         5.88        22.62         6.25         1.05 
TCGA-PC-A5DK 
       75.48 

  AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE 
                        0.10                         0.07 
  AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE 
                      108.10                       143.41 
  AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE 
                       18.13                        21.37 
[1] "0.1 - 108.1 (18.1)" "0.1 - 143.4 (21.4)"
                  TCGA-DX-A1KU                   TCGA-DX-A1KW 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A1KX                   TCGA-DX-A1KY 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A1KZ                   TCGA-DX-A1L0 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A1L1                   TCGA-DX-A1L2 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A1L3                   TCGA-DX-A1L4 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A23R                   TCGA-DX-A23T 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A23U                   TCGA-DX-A23V 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A23Y                   TCGA-DX-A23Z 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A240                   TCGA-DX-A2IZ 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A2J0                   TCGA-DX-A2J1 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A2J4                   TCGA-DX-A3LS 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A3LT                   TCGA-DX-A3LU 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A3LW                   TCGA-DX-A3LY 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A3M1                   TCGA-DX-A3U5 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A3U6                   TCGA-DX-A3U7 
  "AMP PEAK  9(12Q15) MUTATED" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-DX-A3U8                   TCGA-FX-A2QS 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-FX-A3NJ                   TCGA-FX-A3RE 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-FX-A48G                   TCGA-HB-A2OT 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HB-A3YV                   TCGA-HB-A43Z 
  "AMP PEAK  9(12Q15) MUTATED" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HB-A5W3                   TCGA-IE-A4EH 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IE-A4EI                   TCGA-IE-A4EJ 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-IE-A4EK                   TCGA-IF-A4AJ 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IF-A4AK                   TCGA-IS-A3K6 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IS-A3K7                   TCGA-IS-A3K8 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IS-A3KA                   TCGA-IW-A3M4 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-IW-A3M6 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-JV-A5VE                   TCGA-JV-A5VF 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-KF-A41W                   TCGA-MO-A47R 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-PC-A5DK 
"AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-DX-A1KU                   TCGA-DX-A1KW 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A1KX                   TCGA-DX-A1KY 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A1KZ                   TCGA-DX-A1L0 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A1L1                   TCGA-DX-A1L2 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A1L3                   TCGA-DX-A1L4 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A23R                   TCGA-DX-A23T 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A23U                   TCGA-DX-A23V 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A23Y                   TCGA-DX-A23Z 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A240                   TCGA-DX-A2IZ 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A2J0                   TCGA-DX-A2J1 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A2J4                   TCGA-DX-A3LS 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A3LT                   TCGA-DX-A3LU 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A3LW                   TCGA-DX-A3LY 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A3M1                   TCGA-DX-A3U5 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A3U6                   TCGA-DX-A3U7 
  "AMP PEAK  9(12Q15) MUTATED" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-DX-A3U8                   TCGA-FX-A2QS 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-FX-A3NJ                   TCGA-FX-A3RE 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-FX-A48G                   TCGA-HB-A2OT 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HB-A3YV                   TCGA-HB-A43Z 
  "AMP PEAK  9(12Q15) MUTATED" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HB-A5W3                   TCGA-IE-A4EH 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IE-A4EI                   TCGA-IE-A4EJ 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-IE-A4EK                   TCGA-IF-A4AJ 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IF-A4AK                   TCGA-IS-A3K6 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IS-A3K7                   TCGA-IS-A3K8 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IS-A3KA                   TCGA-IW-A3M4 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-IW-A3M6 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-JV-A5VE                   TCGA-JV-A5VF 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-KF-A41W                   TCGA-MO-A47R 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-PC-A5DK 
"AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-DX-A1KU                   TCGA-DX-A1KW 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A1KX                   TCGA-DX-A1KY 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A1KZ                   TCGA-DX-A1L0 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A1L1                   TCGA-DX-A1L2 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A1L3                   TCGA-DX-A1L4 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A23R                   TCGA-DX-A23T 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A23U                   TCGA-DX-A23V 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A23Y                   TCGA-DX-A23Z 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A240                   TCGA-DX-A2IZ 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A2J0                   TCGA-DX-A2J1 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A2J4                   TCGA-DX-A3LS 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A3LT                   TCGA-DX-A3LU 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A3LW                   TCGA-DX-A3LY 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A3M1                   TCGA-DX-A3U5 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-DX-A3U6                   TCGA-DX-A3U7 
  "AMP PEAK  9(12Q15) MUTATED" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-DX-A3U8                   TCGA-FX-A2QS 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-FX-A3NJ                   TCGA-FX-A3RE 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-FX-A48G                   TCGA-HB-A2OT 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HB-A3YV                   TCGA-HB-A43Z 
  "AMP PEAK  9(12Q15) MUTATED" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HB-A5W3                   TCGA-IE-A4EH 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IE-A4EI                   TCGA-IE-A4EJ 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-IE-A4EK                   TCGA-IF-A4AJ 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IF-A4AK                   TCGA-IS-A3K6 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IS-A3K7                   TCGA-IS-A3K8 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IS-A3KA                   TCGA-IW-A3M4 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-IW-A3M6 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-JV-A5VE                   TCGA-JV-A5VF 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-KF-A41W                   TCGA-MO-A47R 
  "AMP PEAK  9(12Q15) MUTATED"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-PC-A5DK 
"AMP PEAK  9(12Q15) WILD-TYPE" 
[1] "hr=" "1"  
D9V2, continuous
D9V3, binary
                              cls
clus                            0  1
  AMP PEAK  9(12Q15) MUTATED   10 22
  AMP PEAK  9(12Q15) WILD-TYPE 18  7
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK  9(12Q15) MUTATED     10   22
  AMP PEAK  9(12Q15) WILD-TYPE   18    7
        clus
vv       AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE
  FEMALE                         10                           18
  MALE                           22                            7

Clustering(10) Variable = AMP PEAK 10(17P11.2) MUTATION ANALYSIS
D10V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 10(17P11.2) MUTATED    9  6
  AMP PEAK 10(17P11.2) WILD-TYPE 30 12
  AMP PEAK 10(17P11.2) MUTATED AMP PEAK 10(17P11.2) WILD-TYPE 
                            15                             42 
  AMP PEAK 10(17P11.2) MUTATED AMP PEAK 10(17P11.2) WILD-TYPE 
                             6                             12 
$`AMP PEAK 10(17P11.2) MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1L2 TCGA-DX-A23Y TCGA-DX-A3M1 TCGA-FX-A3RE 
        2.04        12.85        42.44         6.28        20.02         0.07 
TCGA-FX-A48G TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EJ TCGA-IF-A4AJ 
        0.07         4.54        12.62        21.37         3.22        25.22 
TCGA-JV-A5VF TCGA-KF-A41W TCGA-MO-A47R 
        1.05        11.70         0.10 

$`AMP PEAK 10(17P11.2) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L3 
       14.04        27.19        24.49        18.51        46.68        31.56 
TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z 
       29.85        74.66         5.23        76.37        66.87        27.78 
TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS 
       60.30         8.55         9.70        53.26        43.04         9.01 
TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3U5 TCGA-DX-A3U6 
       23.08        70.49       108.10        17.10        15.02        17.75 
TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-HB-A2OT TCGA-HB-A43Z 
       42.77         4.50         0.46         0.10        26.89         4.14 
TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 
        8.94         1.38        31.76        28.21       143.41       116.88 
TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-PC-A5DK 
       13.58        73.28         5.88        22.62         6.25        75.48 

  AMP PEAK 10(17P11.2) MUTATED AMP PEAK 10(17P11.2) WILD-TYPE 
                          0.07                           0.10 
  AMP PEAK 10(17P11.2) MUTATED AMP PEAK 10(17P11.2) WILD-TYPE 
                         42.44                         143.41 
  AMP PEAK 10(17P11.2) MUTATED AMP PEAK 10(17P11.2) WILD-TYPE 
                          6.28                          25.69 
[1] "0.1 - 42.4 (6.3)"   "0.1 - 143.4 (25.7)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"AMP PEAK 10(17P11.2) WILD-TYPE"   "AMP PEAK 10(17P11.2) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
"AMP PEAK 10(17P11.2) WILD-TYPE"   "AMP PEAK 10(17P11.2) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"AMP PEAK 10(17P11.2) WILD-TYPE"   "AMP PEAK 10(17P11.2) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "AMP PEAK 10(17P11.2) MUTATED" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "AMP PEAK 10(17P11.2) MUTATED" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"AMP PEAK 10(17P11.2) WILD-TYPE"   "AMP PEAK 10(17P11.2) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "AMP PEAK 10(17P11.2) MUTATED" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "AMP PEAK 10(17P11.2) MUTATED" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "AMP PEAK 10(17P11.2) MUTATED"   "AMP PEAK 10(17P11.2) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"AMP PEAK 10(17P11.2) WILD-TYPE"   "AMP PEAK 10(17P11.2) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"AMP PEAK 10(17P11.2) WILD-TYPE"   "AMP PEAK 10(17P11.2) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"AMP PEAK 10(17P11.2) WILD-TYPE"   "AMP PEAK 10(17P11.2) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "AMP PEAK 10(17P11.2) MUTATED"   "AMP PEAK 10(17P11.2) MUTATED" 
                    TCGA-PC-A5DK 
"AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"AMP PEAK 10(17P11.2) WILD-TYPE"   "AMP PEAK 10(17P11.2) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
"AMP PEAK 10(17P11.2) WILD-TYPE"   "AMP PEAK 10(17P11.2) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"AMP PEAK 10(17P11.2) WILD-TYPE"   "AMP PEAK 10(17P11.2) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "AMP PEAK 10(17P11.2) MUTATED" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "AMP PEAK 10(17P11.2) MUTATED" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"AMP PEAK 10(17P11.2) WILD-TYPE"   "AMP PEAK 10(17P11.2) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "AMP PEAK 10(17P11.2) MUTATED" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "AMP PEAK 10(17P11.2) MUTATED" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "AMP PEAK 10(17P11.2) MUTATED"   "AMP PEAK 10(17P11.2) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"AMP PEAK 10(17P11.2) WILD-TYPE"   "AMP PEAK 10(17P11.2) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"AMP PEAK 10(17P11.2) WILD-TYPE"   "AMP PEAK 10(17P11.2) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"AMP PEAK 10(17P11.2) WILD-TYPE"   "AMP PEAK 10(17P11.2) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "AMP PEAK 10(17P11.2) MUTATED"   "AMP PEAK 10(17P11.2) MUTATED" 
                    TCGA-PC-A5DK 
"AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"AMP PEAK 10(17P11.2) WILD-TYPE"   "AMP PEAK 10(17P11.2) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
"AMP PEAK 10(17P11.2) WILD-TYPE"   "AMP PEAK 10(17P11.2) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"AMP PEAK 10(17P11.2) WILD-TYPE"   "AMP PEAK 10(17P11.2) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "AMP PEAK 10(17P11.2) MUTATED" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "AMP PEAK 10(17P11.2) MUTATED" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"AMP PEAK 10(17P11.2) WILD-TYPE"   "AMP PEAK 10(17P11.2) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "AMP PEAK 10(17P11.2) MUTATED" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "AMP PEAK 10(17P11.2) MUTATED" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "AMP PEAK 10(17P11.2) MUTATED"   "AMP PEAK 10(17P11.2) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"AMP PEAK 10(17P11.2) WILD-TYPE"   "AMP PEAK 10(17P11.2) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"AMP PEAK 10(17P11.2) WILD-TYPE"   "AMP PEAK 10(17P11.2) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"AMP PEAK 10(17P11.2) WILD-TYPE" "AMP PEAK 10(17P11.2) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"AMP PEAK 10(17P11.2) WILD-TYPE"   "AMP PEAK 10(17P11.2) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "AMP PEAK 10(17P11.2) MUTATED"   "AMP PEAK 10(17P11.2) MUTATED" 
                    TCGA-PC-A5DK 
"AMP PEAK 10(17P11.2) WILD-TYPE" 
[1] "hr=" "3.5"
D10V2, continuous
D10V3, binary
                                cls
clus                              0  1
  AMP PEAK 10(17P11.2) MUTATED    8  7
  AMP PEAK 10(17P11.2) WILD-TYPE 20 22
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(17P11.2) MUTATED      8    7
  AMP PEAK 10(17P11.2) WILD-TYPE   20   22
        clus
vv       AMP PEAK 10(17P11.2) MUTATED AMP PEAK 10(17P11.2) WILD-TYPE
  FEMALE                            8                             20
  MALE                              7                             22

Clustering(11) Variable = AMP PEAK 11(19P13.2) MUTATION ANALYSIS
D11V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 11(19P13.2) MUTATED   14  5
  AMP PEAK 11(19P13.2) WILD-TYPE 25 13
  AMP PEAK 11(19P13.2) MUTATED AMP PEAK 11(19P13.2) WILD-TYPE 
                            19                             38 
  AMP PEAK 11(19P13.2) MUTATED AMP PEAK 11(19P13.2) WILD-TYPE 
                             5                             13 
$`AMP PEAK 11(19P13.2) MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 
       14.04         2.04        27.19        12.85        24.49        46.68 
TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A2J0 TCGA-DX-A3LW 
       42.44        31.56        74.66         6.28         9.70       108.10 
TCGA-DX-A3U7 TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A3YV TCGA-IE-A4EI TCGA-IE-A4EJ 
       42.77         0.07         0.07         4.54         8.94         3.22 
TCGA-IE-A4EK 
        1.38 

$`AMP PEAK 11(19P13.2) WILD-TYPE`
TCGA-DX-A1L0 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z 
       18.51        29.85         5.23        76.37        66.87        27.78 
TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT 
       60.30         8.55        53.26        43.04         9.01        23.08 
TCGA-DX-A3LU TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U8 
       70.49        17.10        20.02        15.02        17.75         4.50 
TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-HB-A2OT TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH 
        0.46         0.10        26.89         4.14        12.62        21.37 
TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA 
       25.22        31.76        28.21       143.41       116.88        13.58 
TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W 
       73.28         5.88        22.62         6.25         1.05        11.70 
TCGA-MO-A47R TCGA-PC-A5DK 
        0.10        75.48 

  AMP PEAK 11(19P13.2) MUTATED AMP PEAK 11(19P13.2) WILD-TYPE 
                          0.07                           0.10 
  AMP PEAK 11(19P13.2) MUTATED AMP PEAK 11(19P13.2) WILD-TYPE 
                        108.10                         143.41 
  AMP PEAK 11(19P13.2) MUTATED AMP PEAK 11(19P13.2) WILD-TYPE 
                        12.850                         20.695 
[1] "0.1 - 108.1 (12.8)" "0.1 - 143.4 (20.7)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "AMP PEAK 11(19P13.2) MUTATED"   "AMP PEAK 11(19P13.2) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "AMP PEAK 11(19P13.2) MUTATED"   "AMP PEAK 11(19P13.2) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "AMP PEAK 11(19P13.2) MUTATED" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "AMP PEAK 11(19P13.2) MUTATED"   "AMP PEAK 11(19P13.2) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
  "AMP PEAK 11(19P13.2) MUTATED" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "AMP PEAK 11(19P13.2) MUTATED" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "AMP PEAK 11(19P13.2) MUTATED" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "AMP PEAK 11(19P13.2) MUTATED" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "AMP PEAK 11(19P13.2) MUTATED" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"AMP PEAK 11(19P13.2) WILD-TYPE"   "AMP PEAK 11(19P13.2) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"AMP PEAK 11(19P13.2) WILD-TYPE"   "AMP PEAK 11(19P13.2) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "AMP PEAK 11(19P13.2) MUTATED" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "AMP PEAK 11(19P13.2) MUTATED" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "AMP PEAK 11(19P13.2) MUTATED"   "AMP PEAK 11(19P13.2) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "AMP PEAK 11(19P13.2) MUTATED" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-PC-A5DK 
"AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "AMP PEAK 11(19P13.2) MUTATED"   "AMP PEAK 11(19P13.2) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "AMP PEAK 11(19P13.2) MUTATED"   "AMP PEAK 11(19P13.2) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "AMP PEAK 11(19P13.2) MUTATED" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "AMP PEAK 11(19P13.2) MUTATED"   "AMP PEAK 11(19P13.2) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
  "AMP PEAK 11(19P13.2) MUTATED" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "AMP PEAK 11(19P13.2) MUTATED" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "AMP PEAK 11(19P13.2) MUTATED" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "AMP PEAK 11(19P13.2) MUTATED" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "AMP PEAK 11(19P13.2) MUTATED" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"AMP PEAK 11(19P13.2) WILD-TYPE"   "AMP PEAK 11(19P13.2) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"AMP PEAK 11(19P13.2) WILD-TYPE"   "AMP PEAK 11(19P13.2) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "AMP PEAK 11(19P13.2) MUTATED" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "AMP PEAK 11(19P13.2) MUTATED" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "AMP PEAK 11(19P13.2) MUTATED"   "AMP PEAK 11(19P13.2) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "AMP PEAK 11(19P13.2) MUTATED" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-PC-A5DK 
"AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "AMP PEAK 11(19P13.2) MUTATED"   "AMP PEAK 11(19P13.2) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "AMP PEAK 11(19P13.2) MUTATED"   "AMP PEAK 11(19P13.2) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "AMP PEAK 11(19P13.2) MUTATED" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "AMP PEAK 11(19P13.2) MUTATED"   "AMP PEAK 11(19P13.2) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
  "AMP PEAK 11(19P13.2) MUTATED" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "AMP PEAK 11(19P13.2) MUTATED" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "AMP PEAK 11(19P13.2) MUTATED" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "AMP PEAK 11(19P13.2) MUTATED" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "AMP PEAK 11(19P13.2) MUTATED" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"AMP PEAK 11(19P13.2) WILD-TYPE"   "AMP PEAK 11(19P13.2) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"AMP PEAK 11(19P13.2) WILD-TYPE"   "AMP PEAK 11(19P13.2) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "AMP PEAK 11(19P13.2) MUTATED" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "AMP PEAK 11(19P13.2) MUTATED" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "AMP PEAK 11(19P13.2) MUTATED"   "AMP PEAK 11(19P13.2) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "AMP PEAK 11(19P13.2) MUTATED" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
"AMP PEAK 11(19P13.2) WILD-TYPE" "AMP PEAK 11(19P13.2) WILD-TYPE" 
                    TCGA-PC-A5DK 
"AMP PEAK 11(19P13.2) WILD-TYPE" 
[1] "hr=" "1"  
D11V2, continuous
D11V3, binary
                                cls
clus                              0  1
  AMP PEAK 11(19P13.2) MUTATED    7 12
  AMP PEAK 11(19P13.2) WILD-TYPE 21 17
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 11(19P13.2) MUTATED      7   12
  AMP PEAK 11(19P13.2) WILD-TYPE   21   17
        clus
vv       AMP PEAK 11(19P13.2) MUTATED AMP PEAK 11(19P13.2) WILD-TYPE
  FEMALE                            7                             21
  MALE                             12                             17

Clustering(12) Variable = AMP PEAK 12(19Q12) MUTATION ANALYSIS
D12V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 12(19Q12) MUTATED   12  8
  AMP PEAK 12(19Q12) WILD-TYPE 27 10
  AMP PEAK 12(19Q12) MUTATED AMP PEAK 12(19Q12) WILD-TYPE 
                          20                           37 
  AMP PEAK 12(19Q12) MUTATED AMP PEAK 12(19Q12) WILD-TYPE 
                           8                           10 
$`AMP PEAK 12(19Q12) MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L1 TCGA-DX-A1L2 
       14.04         2.04        27.19        12.85        46.68        42.44 
TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A3LT TCGA-DX-A3U7 TCGA-FX-A2QS TCGA-HB-A3YV 
       74.66         6.28        23.08        42.77         0.46         4.54 
TCGA-HB-A5W3 TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IS-A3KA TCGA-IW-A3M5 
       12.62         8.94         3.22         1.38        13.58         5.88 
TCGA-JV-A5VF TCGA-KF-A41W 
        1.05        11.70 

$`AMP PEAK 12(19Q12) WILD-TYPE`
TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U 
       24.49        18.51        31.56        29.85         5.23        76.37 
TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 
       66.87        27.78        60.30         8.55         9.70        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 
       43.04         9.01        70.49       108.10        17.10        20.02 
TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G 
       15.02        17.75         4.50         0.10         0.07         0.07 
TCGA-HB-A2OT TCGA-HB-A43Z TCGA-IE-A4EH TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 
       26.89         4.14        21.37        25.22        31.76        28.21 
TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-MO-A47R 
      143.41       116.88        73.28        22.62         6.25         0.10 
TCGA-PC-A5DK 
       75.48 

  AMP PEAK 12(19Q12) MUTATED AMP PEAK 12(19Q12) WILD-TYPE 
                        0.46                         0.07 
  AMP PEAK 12(19Q12) MUTATED AMP PEAK 12(19Q12) WILD-TYPE 
                       74.66                       143.41 
  AMP PEAK 12(19Q12) MUTATED AMP PEAK 12(19Q12) WILD-TYPE 
                       12.16                        24.49 
[1] "0.5 - 74.7 (12.2)"  "0.1 - 143.4 (24.5)"
                  TCGA-DX-A1KU                   TCGA-DX-A1KW 
  "AMP PEAK 12(19Q12) MUTATED"   "AMP PEAK 12(19Q12) MUTATED" 
                  TCGA-DX-A1KX                   TCGA-DX-A1KY 
  "AMP PEAK 12(19Q12) MUTATED"   "AMP PEAK 12(19Q12) MUTATED" 
                  TCGA-DX-A1KZ                   TCGA-DX-A1L0 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A1L1                   TCGA-DX-A1L2 
  "AMP PEAK 12(19Q12) MUTATED"   "AMP PEAK 12(19Q12) MUTATED" 
                  TCGA-DX-A1L3                   TCGA-DX-A1L4 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A23R                   TCGA-DX-A23T 
  "AMP PEAK 12(19Q12) MUTATED" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A23U                   TCGA-DX-A23V 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A23Y                   TCGA-DX-A23Z 
  "AMP PEAK 12(19Q12) MUTATED" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A240                   TCGA-DX-A2IZ 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A2J0                   TCGA-DX-A2J1 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A2J4                   TCGA-DX-A3LS 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A3LT                   TCGA-DX-A3LU 
  "AMP PEAK 12(19Q12) MUTATED" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A3LW                   TCGA-DX-A3LY 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A3M1                   TCGA-DX-A3U5 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A3U6                   TCGA-DX-A3U7 
"AMP PEAK 12(19Q12) WILD-TYPE"   "AMP PEAK 12(19Q12) MUTATED" 
                  TCGA-DX-A3U8                   TCGA-FX-A2QS 
"AMP PEAK 12(19Q12) WILD-TYPE"   "AMP PEAK 12(19Q12) MUTATED" 
                  TCGA-FX-A3NJ                   TCGA-FX-A3RE 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-FX-A48G                   TCGA-HB-A2OT 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-HB-A3YV                   TCGA-HB-A43Z 
  "AMP PEAK 12(19Q12) MUTATED" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-HB-A5W3                   TCGA-IE-A4EH 
  "AMP PEAK 12(19Q12) MUTATED" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-IE-A4EI                   TCGA-IE-A4EJ 
  "AMP PEAK 12(19Q12) MUTATED"   "AMP PEAK 12(19Q12) MUTATED" 
                  TCGA-IE-A4EK                   TCGA-IF-A4AJ 
  "AMP PEAK 12(19Q12) MUTATED" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-IF-A4AK                   TCGA-IS-A3K6 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-IS-A3K7                   TCGA-IS-A3K8 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-IS-A3KA                   TCGA-IW-A3M4 
  "AMP PEAK 12(19Q12) MUTATED" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-IW-A3M6 
  "AMP PEAK 12(19Q12) MUTATED" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-JV-A5VE                   TCGA-JV-A5VF 
"AMP PEAK 12(19Q12) WILD-TYPE"   "AMP PEAK 12(19Q12) MUTATED" 
                  TCGA-KF-A41W                   TCGA-MO-A47R 
  "AMP PEAK 12(19Q12) MUTATED" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-PC-A5DK 
"AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A1KU                   TCGA-DX-A1KW 
  "AMP PEAK 12(19Q12) MUTATED"   "AMP PEAK 12(19Q12) MUTATED" 
                  TCGA-DX-A1KX                   TCGA-DX-A1KY 
  "AMP PEAK 12(19Q12) MUTATED"   "AMP PEAK 12(19Q12) MUTATED" 
                  TCGA-DX-A1KZ                   TCGA-DX-A1L0 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A1L1                   TCGA-DX-A1L2 
  "AMP PEAK 12(19Q12) MUTATED"   "AMP PEAK 12(19Q12) MUTATED" 
                  TCGA-DX-A1L3                   TCGA-DX-A1L4 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A23R                   TCGA-DX-A23T 
  "AMP PEAK 12(19Q12) MUTATED" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A23U                   TCGA-DX-A23V 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A23Y                   TCGA-DX-A23Z 
  "AMP PEAK 12(19Q12) MUTATED" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A240                   TCGA-DX-A2IZ 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A2J0                   TCGA-DX-A2J1 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A2J4                   TCGA-DX-A3LS 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A3LT                   TCGA-DX-A3LU 
  "AMP PEAK 12(19Q12) MUTATED" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A3LW                   TCGA-DX-A3LY 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A3M1                   TCGA-DX-A3U5 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A3U6                   TCGA-DX-A3U7 
"AMP PEAK 12(19Q12) WILD-TYPE"   "AMP PEAK 12(19Q12) MUTATED" 
                  TCGA-DX-A3U8                   TCGA-FX-A2QS 
"AMP PEAK 12(19Q12) WILD-TYPE"   "AMP PEAK 12(19Q12) MUTATED" 
                  TCGA-FX-A3NJ                   TCGA-FX-A3RE 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-FX-A48G                   TCGA-HB-A2OT 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-HB-A3YV                   TCGA-HB-A43Z 
  "AMP PEAK 12(19Q12) MUTATED" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-HB-A5W3                   TCGA-IE-A4EH 
  "AMP PEAK 12(19Q12) MUTATED" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-IE-A4EI                   TCGA-IE-A4EJ 
  "AMP PEAK 12(19Q12) MUTATED"   "AMP PEAK 12(19Q12) MUTATED" 
                  TCGA-IE-A4EK                   TCGA-IF-A4AJ 
  "AMP PEAK 12(19Q12) MUTATED" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-IF-A4AK                   TCGA-IS-A3K6 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-IS-A3K7                   TCGA-IS-A3K8 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-IS-A3KA                   TCGA-IW-A3M4 
  "AMP PEAK 12(19Q12) MUTATED" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-IW-A3M6 
  "AMP PEAK 12(19Q12) MUTATED" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-JV-A5VE                   TCGA-JV-A5VF 
"AMP PEAK 12(19Q12) WILD-TYPE"   "AMP PEAK 12(19Q12) MUTATED" 
                  TCGA-KF-A41W                   TCGA-MO-A47R 
  "AMP PEAK 12(19Q12) MUTATED" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-PC-A5DK 
"AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A1KU                   TCGA-DX-A1KW 
  "AMP PEAK 12(19Q12) MUTATED"   "AMP PEAK 12(19Q12) MUTATED" 
                  TCGA-DX-A1KX                   TCGA-DX-A1KY 
  "AMP PEAK 12(19Q12) MUTATED"   "AMP PEAK 12(19Q12) MUTATED" 
                  TCGA-DX-A1KZ                   TCGA-DX-A1L0 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A1L1                   TCGA-DX-A1L2 
  "AMP PEAK 12(19Q12) MUTATED"   "AMP PEAK 12(19Q12) MUTATED" 
                  TCGA-DX-A1L3                   TCGA-DX-A1L4 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A23R                   TCGA-DX-A23T 
  "AMP PEAK 12(19Q12) MUTATED" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A23U                   TCGA-DX-A23V 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A23Y                   TCGA-DX-A23Z 
  "AMP PEAK 12(19Q12) MUTATED" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A240                   TCGA-DX-A2IZ 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A2J0                   TCGA-DX-A2J1 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A2J4                   TCGA-DX-A3LS 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A3LT                   TCGA-DX-A3LU 
  "AMP PEAK 12(19Q12) MUTATED" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A3LW                   TCGA-DX-A3LY 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A3M1                   TCGA-DX-A3U5 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-DX-A3U6                   TCGA-DX-A3U7 
"AMP PEAK 12(19Q12) WILD-TYPE"   "AMP PEAK 12(19Q12) MUTATED" 
                  TCGA-DX-A3U8                   TCGA-FX-A2QS 
"AMP PEAK 12(19Q12) WILD-TYPE"   "AMP PEAK 12(19Q12) MUTATED" 
                  TCGA-FX-A3NJ                   TCGA-FX-A3RE 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-FX-A48G                   TCGA-HB-A2OT 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-HB-A3YV                   TCGA-HB-A43Z 
  "AMP PEAK 12(19Q12) MUTATED" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-HB-A5W3                   TCGA-IE-A4EH 
  "AMP PEAK 12(19Q12) MUTATED" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-IE-A4EI                   TCGA-IE-A4EJ 
  "AMP PEAK 12(19Q12) MUTATED"   "AMP PEAK 12(19Q12) MUTATED" 
                  TCGA-IE-A4EK                   TCGA-IF-A4AJ 
  "AMP PEAK 12(19Q12) MUTATED" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-IF-A4AK                   TCGA-IS-A3K6 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-IS-A3K7                   TCGA-IS-A3K8 
"AMP PEAK 12(19Q12) WILD-TYPE" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-IS-A3KA                   TCGA-IW-A3M4 
  "AMP PEAK 12(19Q12) MUTATED" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-IW-A3M6 
  "AMP PEAK 12(19Q12) MUTATED" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-JV-A5VE                   TCGA-JV-A5VF 
"AMP PEAK 12(19Q12) WILD-TYPE"   "AMP PEAK 12(19Q12) MUTATED" 
                  TCGA-KF-A41W                   TCGA-MO-A47R 
  "AMP PEAK 12(19Q12) MUTATED" "AMP PEAK 12(19Q12) WILD-TYPE" 
                  TCGA-PC-A5DK 
"AMP PEAK 12(19Q12) WILD-TYPE" 
[1] "hr=" "2.6"
D12V2, continuous
D12V3, binary
                              cls
clus                            0  1
  AMP PEAK 12(19Q12) MUTATED   10 10
  AMP PEAK 12(19Q12) WILD-TYPE 18 19
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 12(19Q12) MUTATED     10   10
  AMP PEAK 12(19Q12) WILD-TYPE   18   19
        clus
vv       AMP PEAK 12(19Q12) MUTATED AMP PEAK 12(19Q12) WILD-TYPE
  FEMALE                         10                           18
  MALE                           10                           19

Clustering(13) Variable = AMP PEAK 13(XQ21.1) MUTATION ANALYSIS
D13V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 13(XQ21.1) MUTATED    7  4
  AMP PEAK 13(XQ21.1) WILD-TYPE 32 14
  AMP PEAK 13(XQ21.1) MUTATED AMP PEAK 13(XQ21.1) WILD-TYPE 
                           11                            46 
  AMP PEAK 13(XQ21.1) MUTATED AMP PEAK 13(XQ21.1) WILD-TYPE 
                            4                            14 
$`AMP PEAK 13(XQ21.1) MUTATED`
TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A23Y TCGA-DX-A3LY 
       12.85        24.49        18.51        46.68         6.28        17.10 
TCGA-FX-A2QS TCGA-HB-A43Z TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IS-A3KA 
        0.46         4.14         8.94         3.22        13.58 

$`AMP PEAK 13(XQ21.1) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 
       14.04         2.04        27.19        42.44        31.56        29.85 
TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 
       74.66         5.23        76.37        66.87        27.78        60.30 
TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT 
        8.55         9.70        53.26        43.04         9.01        23.08 
TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 
       70.49       108.10        20.02        15.02        17.75        42.77 
TCGA-DX-A3U8 TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV 
        4.50         0.10         0.07         0.07        26.89         4.54 
TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 
       12.62        21.37         1.38        25.22        31.76        28.21 
TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE 
      143.41       116.88        73.28         5.88        22.62         6.25 
TCGA-JV-A5VF TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
        1.05        11.70         0.10        75.48 

  AMP PEAK 13(XQ21.1) MUTATED AMP PEAK 13(XQ21.1) WILD-TYPE 
                         0.46                          0.07 
  AMP PEAK 13(XQ21.1) MUTATED AMP PEAK 13(XQ21.1) WILD-TYPE 
                        46.68                        143.41 
  AMP PEAK 13(XQ21.1) MUTATED AMP PEAK 13(XQ21.1) WILD-TYPE 
                        12.85                         22.85 
[1] "0.5 - 46.7 (12.8)"  "0.1 - 143.4 (22.9)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"AMP PEAK 13(XQ21.1) WILD-TYPE"   "AMP PEAK 13(XQ21.1) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "AMP PEAK 13(XQ21.1) MUTATED"   "AMP PEAK 13(XQ21.1) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "AMP PEAK 13(XQ21.1) MUTATED" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "AMP PEAK 13(XQ21.1) MUTATED" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK 13(XQ21.1) WILD-TYPE"   "AMP PEAK 13(XQ21.1) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"AMP PEAK 13(XQ21.1) WILD-TYPE"   "AMP PEAK 13(XQ21.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"AMP PEAK 13(XQ21.1) WILD-TYPE"   "AMP PEAK 13(XQ21.1) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "AMP PEAK 13(XQ21.1) MUTATED"   "AMP PEAK 13(XQ21.1) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "AMP PEAK 13(XQ21.1) MUTATED" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-PC-A5DK 
"AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"AMP PEAK 13(XQ21.1) WILD-TYPE"   "AMP PEAK 13(XQ21.1) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "AMP PEAK 13(XQ21.1) MUTATED"   "AMP PEAK 13(XQ21.1) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "AMP PEAK 13(XQ21.1) MUTATED" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "AMP PEAK 13(XQ21.1) MUTATED" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK 13(XQ21.1) WILD-TYPE"   "AMP PEAK 13(XQ21.1) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"AMP PEAK 13(XQ21.1) WILD-TYPE"   "AMP PEAK 13(XQ21.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"AMP PEAK 13(XQ21.1) WILD-TYPE"   "AMP PEAK 13(XQ21.1) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "AMP PEAK 13(XQ21.1) MUTATED"   "AMP PEAK 13(XQ21.1) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "AMP PEAK 13(XQ21.1) MUTATED" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-PC-A5DK 
"AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"AMP PEAK 13(XQ21.1) WILD-TYPE"   "AMP PEAK 13(XQ21.1) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "AMP PEAK 13(XQ21.1) MUTATED"   "AMP PEAK 13(XQ21.1) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "AMP PEAK 13(XQ21.1) MUTATED" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "AMP PEAK 13(XQ21.1) MUTATED" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK 13(XQ21.1) WILD-TYPE"   "AMP PEAK 13(XQ21.1) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"AMP PEAK 13(XQ21.1) WILD-TYPE"   "AMP PEAK 13(XQ21.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"AMP PEAK 13(XQ21.1) WILD-TYPE"   "AMP PEAK 13(XQ21.1) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "AMP PEAK 13(XQ21.1) MUTATED"   "AMP PEAK 13(XQ21.1) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "AMP PEAK 13(XQ21.1) MUTATED" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-PC-A5DK 
"AMP PEAK 13(XQ21.1) WILD-TYPE" 
[1] "hr=" "2.1"
D13V2, continuous
D13V3, binary
                               cls
clus                             0  1
  AMP PEAK 13(XQ21.1) MUTATED    5  6
  AMP PEAK 13(XQ21.1) WILD-TYPE 23 23
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 13(XQ21.1) MUTATED      5    6
  AMP PEAK 13(XQ21.1) WILD-TYPE   23   23
        clus
vv       AMP PEAK 13(XQ21.1) MUTATED AMP PEAK 13(XQ21.1) WILD-TYPE
  FEMALE                           5                            23
  MALE                             6                            23

Clustering(14) Variable = DEL PEAK  1(1P36.32) MUTATION ANALYSIS
D14V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  1(1P36.32) MUTATED   16  2
  DEL PEAK  1(1P36.32) WILD-TYPE 23 16
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            18                             39 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                             2                             16 
$`DEL PEAK  1(1P36.32) MUTATED`
TCGA-DX-A1KX TCGA-DX-A3LW TCGA-DX-A3U5 TCGA-DX-A3U7 TCGA-FX-A3RE TCGA-FX-A48G 
       27.19       108.10        15.02        42.77         0.07         0.07 
TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EK TCGA-IF-A4AK TCGA-IS-A3K7 
        4.14        12.62        21.37         1.38        31.76       143.41 
TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-MO-A47R TCGA-PC-A5DK 
      116.88        13.58        73.28        22.62         0.10        75.48 

$`DEL PEAK  1(1P36.32) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 
       14.04         2.04        12.85        24.49        18.51        46.68 
TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U 
       42.44        31.56        29.85        74.66         5.23        76.37 
TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 
       66.87         6.28        27.78        60.30         8.55         9.70 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LY 
       53.26        43.04         9.01        23.08        70.49        17.10 
TCGA-DX-A3M1 TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-HB-A2OT 
       20.02        17.75         4.50         0.46         0.10        26.89 
TCGA-HB-A3YV TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IF-A4AJ TCGA-IS-A3K6 TCGA-IW-A3M5 
        4.54         8.94         3.22        25.22        28.21         5.88 
TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W 
        6.25         1.05        11.70 

  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                          0.07                           0.10 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                        143.41                          76.37 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                        21.995                         17.750 
[1] "0.1 - 143.4 (22.0)" "0.1 - 76.4 (17.8)" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-PC-A5DK 
  "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-PC-A5DK 
  "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-PC-A5DK 
  "DEL PEAK  1(1P36.32) MUTATED" 
[1] "hr=" "5"  
D14V2, continuous
D14V3, binary
                                cls
clus                              0  1
  DEL PEAK  1(1P36.32) MUTATED   13  5
  DEL PEAK  1(1P36.32) WILD-TYPE 15 24
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.32) MUTATED     13    5
  DEL PEAK  1(1P36.32) WILD-TYPE   15   24
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  FEMALE                           13                             15
  MALE                              5                             24

Clustering(15) Variable = DEL PEAK  2(1P32.3) MUTATION ANALYSIS
D15V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  2(1P32.3) MUTATED   11  1
  DEL PEAK  2(1P32.3) WILD-TYPE 28 17
  DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE 
                           12                            45 
  DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE 
                            1                            17 
$`DEL PEAK  2(1P32.3) MUTATED`
TCGA-DX-A1KX TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A3LY TCGA-FX-A3RE TCGA-FX-A48G 
       27.19        46.68        42.44        17.10         0.07         0.07 
TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-MO-A47R 
      143.41       116.88        13.58        73.28        22.62         0.10 

$`DEL PEAK  2(1P32.3) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L3 
       14.04         2.04        12.85        24.49        18.51        31.56 
TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y 
       29.85        74.66         5.23        76.37        66.87         6.28 
TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 
       27.78        60.30         8.55         9.70        53.26        43.04 
TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3M1 TCGA-DX-A3U5 
        9.01        23.08        70.49       108.10        20.02        15.02 
TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-HB-A2OT 
       17.75        42.77         4.50         0.46         0.10        26.89 
TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ 
        4.54         4.14        12.62        21.37         8.94         3.22 
TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IW-A3M5 TCGA-JV-A5VE 
        1.38        25.22        31.76        28.21         5.88         6.25 
TCGA-JV-A5VF TCGA-KF-A41W TCGA-PC-A5DK 
        1.05        11.70        75.48 

  DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE 
                         0.07                          0.10 
  DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE 
                       143.41                        108.10 
  DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE 
                       24.905                        17.750 
[1] "0.1 - 143.4 (24.9)" "0.1 - 108.1 (17.8)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK  2(1P32.3) MUTATED" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK  2(1P32.3) MUTATED"   "DEL PEAK  2(1P32.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK  2(1P32.3) WILD-TYPE"   "DEL PEAK  2(1P32.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  2(1P32.3) WILD-TYPE"   "DEL PEAK  2(1P32.3) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK  2(1P32.3) MUTATED" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK  2(1P32.3) MUTATED"   "DEL PEAK  2(1P32.3) MUTATED" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK  2(1P32.3) MUTATED"   "DEL PEAK  2(1P32.3) MUTATED" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK  2(1P32.3) WILD-TYPE"   "DEL PEAK  2(1P32.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"DEL PEAK  2(1P32.3) WILD-TYPE"   "DEL PEAK  2(1P32.3) MUTATED" 
                   TCGA-PC-A5DK 
"DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK  2(1P32.3) MUTATED" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK  2(1P32.3) MUTATED"   "DEL PEAK  2(1P32.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK  2(1P32.3) WILD-TYPE"   "DEL PEAK  2(1P32.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  2(1P32.3) WILD-TYPE"   "DEL PEAK  2(1P32.3) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK  2(1P32.3) MUTATED" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK  2(1P32.3) MUTATED"   "DEL PEAK  2(1P32.3) MUTATED" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK  2(1P32.3) MUTATED"   "DEL PEAK  2(1P32.3) MUTATED" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK  2(1P32.3) WILD-TYPE"   "DEL PEAK  2(1P32.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"DEL PEAK  2(1P32.3) WILD-TYPE"   "DEL PEAK  2(1P32.3) MUTATED" 
                   TCGA-PC-A5DK 
"DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK  2(1P32.3) MUTATED" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK  2(1P32.3) MUTATED"   "DEL PEAK  2(1P32.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK  2(1P32.3) WILD-TYPE"   "DEL PEAK  2(1P32.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  2(1P32.3) WILD-TYPE"   "DEL PEAK  2(1P32.3) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK  2(1P32.3) MUTATED" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK  2(1P32.3) MUTATED"   "DEL PEAK  2(1P32.3) MUTATED" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK  2(1P32.3) MUTATED"   "DEL PEAK  2(1P32.3) MUTATED" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK  2(1P32.3) WILD-TYPE"   "DEL PEAK  2(1P32.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"DEL PEAK  2(1P32.3) WILD-TYPE"   "DEL PEAK  2(1P32.3) MUTATED" 
                   TCGA-PC-A5DK 
"DEL PEAK  2(1P32.3) WILD-TYPE" 
[1] "hr=" "5.9"
D15V2, continuous
D15V3, binary
                               cls
clus                             0  1
  DEL PEAK  2(1P32.3) MUTATED    9  3
  DEL PEAK  2(1P32.3) WILD-TYPE 19 26
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P32.3) MUTATED      9    3
  DEL PEAK  2(1P32.3) WILD-TYPE   19   26
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  FEMALE                           9                            19
  MALE                             3                            26

Clustering(16) Variable = DEL PEAK  3(1Q44) MUTATION ANALYSIS
D16V1, survival
                             sevent
clus2                          0  1
  DEL PEAK  3(1Q44) MUTATED   13  6
  DEL PEAK  3(1Q44) WILD-TYPE 26 12
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         19                          38 
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                          6                          12 
$`DEL PEAK  3(1Q44) MUTATED`
TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 
       27.19        12.85        24.49        18.51        46.68        42.44 
TCGA-DX-A23Y TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3U5 TCGA-DX-A3U7 TCGA-FX-A2QS 
        6.28       108.10        17.10        15.02        42.77         0.46 
TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IE-A4EJ TCGA-IS-A3KA 
        0.07        26.89         4.54        12.62         3.22        13.58 
TCGA-KF-A41W 
       11.70 

$`DEL PEAK  3(1Q44) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T 
       14.04         2.04        31.56        29.85        74.66         5.23 
TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 
       76.37        66.87        27.78        60.30         8.55         9.70 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3M1 
       53.26        43.04         9.01        23.08        70.49        20.02 
TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-HB-A43Z TCGA-IE-A4EH 
       17.75         4.50         0.10         0.07         4.14        21.37 
TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 
        8.94         1.38        25.22        31.76        28.21       143.41 
TCGA-IS-A3K8 TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF 
      116.88        73.28         5.88        22.62         6.25         1.05 
TCGA-MO-A47R TCGA-PC-A5DK 
        0.10        75.48 

  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                       0.07                        0.07 
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                     108.10                      143.41 
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                     15.020                      21.995 
[1] "0.1 - 108.1 (15.0)" "0.1 - 143.4 (22.0)"
                 TCGA-DX-A1KU                  TCGA-DX-A1KW 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A1KX                  TCGA-DX-A1KY 
  "DEL PEAK  3(1Q44) MUTATED"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-DX-A1KZ                  TCGA-DX-A1L0 
  "DEL PEAK  3(1Q44) MUTATED"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-DX-A1L1                  TCGA-DX-A1L2 
  "DEL PEAK  3(1Q44) MUTATED"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-DX-A1L3                  TCGA-DX-A1L4 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A23R                  TCGA-DX-A23T 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A23U                  TCGA-DX-A23V 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A23Y                  TCGA-DX-A23Z 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A240                  TCGA-DX-A2IZ 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A2J0                  TCGA-DX-A2J1 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A2J4                  TCGA-DX-A3LS 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A3LT                  TCGA-DX-A3LU 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A3LW                  TCGA-DX-A3LY 
  "DEL PEAK  3(1Q44) MUTATED"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-DX-A3M1                  TCGA-DX-A3U5 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-DX-A3U6                  TCGA-DX-A3U7 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-DX-A3U8                  TCGA-FX-A2QS 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-FX-A3NJ                  TCGA-FX-A3RE 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FX-A48G                  TCGA-HB-A2OT 
  "DEL PEAK  3(1Q44) MUTATED"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-HB-A3YV                  TCGA-HB-A43Z 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-HB-A5W3                  TCGA-IE-A4EH 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-IE-A4EI                  TCGA-IE-A4EJ 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-IE-A4EK                  TCGA-IF-A4AJ 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-IF-A4AK                  TCGA-IS-A3K6 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-IS-A3K7                  TCGA-IS-A3K8 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-IS-A3KA                  TCGA-IW-A3M4 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-IW-A3M5                  TCGA-IW-A3M6 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-JV-A5VE                  TCGA-JV-A5VF 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-KF-A41W                  TCGA-MO-A47R 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-PC-A5DK 
"DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A1KU                  TCGA-DX-A1KW 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A1KX                  TCGA-DX-A1KY 
  "DEL PEAK  3(1Q44) MUTATED"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-DX-A1KZ                  TCGA-DX-A1L0 
  "DEL PEAK  3(1Q44) MUTATED"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-DX-A1L1                  TCGA-DX-A1L2 
  "DEL PEAK  3(1Q44) MUTATED"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-DX-A1L3                  TCGA-DX-A1L4 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A23R                  TCGA-DX-A23T 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A23U                  TCGA-DX-A23V 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A23Y                  TCGA-DX-A23Z 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A240                  TCGA-DX-A2IZ 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A2J0                  TCGA-DX-A2J1 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A2J4                  TCGA-DX-A3LS 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A3LT                  TCGA-DX-A3LU 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A3LW                  TCGA-DX-A3LY 
  "DEL PEAK  3(1Q44) MUTATED"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-DX-A3M1                  TCGA-DX-A3U5 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-DX-A3U6                  TCGA-DX-A3U7 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-DX-A3U8                  TCGA-FX-A2QS 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-FX-A3NJ                  TCGA-FX-A3RE 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FX-A48G                  TCGA-HB-A2OT 
  "DEL PEAK  3(1Q44) MUTATED"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-HB-A3YV                  TCGA-HB-A43Z 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-HB-A5W3                  TCGA-IE-A4EH 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-IE-A4EI                  TCGA-IE-A4EJ 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-IE-A4EK                  TCGA-IF-A4AJ 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-IF-A4AK                  TCGA-IS-A3K6 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-IS-A3K7                  TCGA-IS-A3K8 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-IS-A3KA                  TCGA-IW-A3M4 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-IW-A3M5                  TCGA-IW-A3M6 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-JV-A5VE                  TCGA-JV-A5VF 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-KF-A41W                  TCGA-MO-A47R 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-PC-A5DK 
"DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A1KU                  TCGA-DX-A1KW 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A1KX                  TCGA-DX-A1KY 
  "DEL PEAK  3(1Q44) MUTATED"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-DX-A1KZ                  TCGA-DX-A1L0 
  "DEL PEAK  3(1Q44) MUTATED"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-DX-A1L1                  TCGA-DX-A1L2 
  "DEL PEAK  3(1Q44) MUTATED"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-DX-A1L3                  TCGA-DX-A1L4 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A23R                  TCGA-DX-A23T 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A23U                  TCGA-DX-A23V 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A23Y                  TCGA-DX-A23Z 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A240                  TCGA-DX-A2IZ 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A2J0                  TCGA-DX-A2J1 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A2J4                  TCGA-DX-A3LS 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A3LT                  TCGA-DX-A3LU 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A3LW                  TCGA-DX-A3LY 
  "DEL PEAK  3(1Q44) MUTATED"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-DX-A3M1                  TCGA-DX-A3U5 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-DX-A3U6                  TCGA-DX-A3U7 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-DX-A3U8                  TCGA-FX-A2QS 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-FX-A3NJ                  TCGA-FX-A3RE 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FX-A48G                  TCGA-HB-A2OT 
  "DEL PEAK  3(1Q44) MUTATED"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-HB-A3YV                  TCGA-HB-A43Z 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-HB-A5W3                  TCGA-IE-A4EH 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-IE-A4EI                  TCGA-IE-A4EJ 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-IE-A4EK                  TCGA-IF-A4AJ 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-IF-A4AK                  TCGA-IS-A3K6 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-IS-A3K7                  TCGA-IS-A3K8 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-IS-A3KA                  TCGA-IW-A3M4 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-IW-A3M5                  TCGA-IW-A3M6 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-JV-A5VE                  TCGA-JV-A5VF 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-KF-A41W                  TCGA-MO-A47R 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-PC-A5DK 
"DEL PEAK  3(1Q44) WILD-TYPE" 
[1] "hr=" "1.2"
D16V2, continuous
D16V3, binary
                             cls
clus                           0  1
  DEL PEAK  3(1Q44) MUTATED    8 11
  DEL PEAK  3(1Q44) WILD-TYPE 20 18
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  3(1Q44) MUTATED      8   11
  DEL PEAK  3(1Q44) WILD-TYPE   20   18
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  FEMALE                         8                          20
  MALE                          11                          18

Clustering(17) Variable = DEL PEAK  4(2P25.3) MUTATION ANALYSIS
D17V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  4(2P25.3) MUTATED   11  4
  DEL PEAK  4(2P25.3) WILD-TYPE 28 14
  DEL PEAK  4(2P25.3) MUTATED DEL PEAK  4(2P25.3) WILD-TYPE 
                           15                            42 
  DEL PEAK  4(2P25.3) MUTATED DEL PEAK  4(2P25.3) WILD-TYPE 
                            4                            14 
$`DEL PEAK  4(2P25.3) MUTATED`
TCGA-DX-A1L2 TCGA-DX-A23Y TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-FX-A48G TCGA-HB-A2OT 
       42.44         6.28        17.10        20.02         0.07        26.89 
TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EJ TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3KA 
        4.14        12.62         3.22        25.22        31.76        13.58 
TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-JV-A5VE 
       73.28        22.62         6.25 

$`DEL PEAK  4(2P25.3) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 
       14.04         2.04        27.19        12.85        24.49        18.51 
TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U 
       46.68        31.56        29.85        74.66         5.23        76.37 
TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 
       66.87        27.78        60.30         8.55         9.70        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3U5 
       43.04         9.01        23.08        70.49       108.10        15.02 
TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE 
       17.75        42.77         4.50         0.46         0.10         0.07 
TCGA-HB-A3YV TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IS-A3K6 TCGA-IS-A3K7 
        4.54        21.37         8.94         1.38        28.21       143.41 
TCGA-IS-A3K8 TCGA-IW-A3M5 TCGA-JV-A5VF TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
      116.88         5.88         1.05        11.70         0.10        75.48 

  DEL PEAK  4(2P25.3) MUTATED DEL PEAK  4(2P25.3) WILD-TYPE 
                         0.07                          0.07 
  DEL PEAK  4(2P25.3) MUTATED DEL PEAK  4(2P25.3) WILD-TYPE 
                        73.28                        143.41 
  DEL PEAK  4(2P25.3) MUTATED DEL PEAK  4(2P25.3) WILD-TYPE 
                        17.10                         19.94 
[1] "0.1 - 73.3 (17.1)"  "0.1 - 143.4 (19.9)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK  4(2P25.3) WILD-TYPE"   "DEL PEAK  4(2P25.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK  4(2P25.3) MUTATED" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK  4(2P25.3) WILD-TYPE"   "DEL PEAK  4(2P25.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK  4(2P25.3) MUTATED" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK  4(2P25.3) MUTATED"   "DEL PEAK  4(2P25.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK  4(2P25.3) WILD-TYPE"   "DEL PEAK  4(2P25.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "DEL PEAK  4(2P25.3) MUTATED" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK  4(2P25.3) WILD-TYPE"   "DEL PEAK  4(2P25.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK  4(2P25.3) WILD-TYPE"   "DEL PEAK  4(2P25.3) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "DEL PEAK  4(2P25.3) MUTATED" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK  4(2P25.3) MUTATED"   "DEL PEAK  4(2P25.3) MUTATED" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK  4(2P25.3) WILD-TYPE"   "DEL PEAK  4(2P25.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK  4(2P25.3) MUTATED" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-PC-A5DK 
"DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK  4(2P25.3) WILD-TYPE"   "DEL PEAK  4(2P25.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK  4(2P25.3) MUTATED" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK  4(2P25.3) WILD-TYPE"   "DEL PEAK  4(2P25.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK  4(2P25.3) MUTATED" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK  4(2P25.3) MUTATED"   "DEL PEAK  4(2P25.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK  4(2P25.3) WILD-TYPE"   "DEL PEAK  4(2P25.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "DEL PEAK  4(2P25.3) MUTATED" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK  4(2P25.3) WILD-TYPE"   "DEL PEAK  4(2P25.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK  4(2P25.3) WILD-TYPE"   "DEL PEAK  4(2P25.3) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "DEL PEAK  4(2P25.3) MUTATED" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK  4(2P25.3) MUTATED"   "DEL PEAK  4(2P25.3) MUTATED" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK  4(2P25.3) WILD-TYPE"   "DEL PEAK  4(2P25.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK  4(2P25.3) MUTATED" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-PC-A5DK 
"DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK  4(2P25.3) WILD-TYPE"   "DEL PEAK  4(2P25.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK  4(2P25.3) MUTATED" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK  4(2P25.3) WILD-TYPE"   "DEL PEAK  4(2P25.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK  4(2P25.3) MUTATED" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK  4(2P25.3) MUTATED"   "DEL PEAK  4(2P25.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK  4(2P25.3) WILD-TYPE"   "DEL PEAK  4(2P25.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "DEL PEAK  4(2P25.3) MUTATED" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK  4(2P25.3) WILD-TYPE"   "DEL PEAK  4(2P25.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK  4(2P25.3) WILD-TYPE"   "DEL PEAK  4(2P25.3) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "DEL PEAK  4(2P25.3) MUTATED" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK  4(2P25.3) MUTATED"   "DEL PEAK  4(2P25.3) MUTATED" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK  4(2P25.3) WILD-TYPE"   "DEL PEAK  4(2P25.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK  4(2P25.3) MUTATED" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-PC-A5DK 
"DEL PEAK  4(2P25.3) WILD-TYPE" 
[1] "hr=" "1"  
D17V2, continuous
D17V3, binary
                               cls
clus                             0  1
  DEL PEAK  4(2P25.3) MUTATED   10  5
  DEL PEAK  4(2P25.3) WILD-TYPE 18 24
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2P25.3) MUTATED     10    5
  DEL PEAK  4(2P25.3) WILD-TYPE   18   24
        clus
vv       DEL PEAK  4(2P25.3) MUTATED DEL PEAK  4(2P25.3) WILD-TYPE
  FEMALE                          10                            18
  MALE                             5                            24

Clustering(18) Variable = DEL PEAK  5(2Q37.3) MUTATION ANALYSIS
D18V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  5(2Q37.3) MUTATED   15  7
  DEL PEAK  5(2Q37.3) WILD-TYPE 24 11
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                           22                            35 
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                            7                            11 
$`DEL PEAK  5(2Q37.3) MUTATED`
TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A23Y TCGA-DX-A3LW 
       12.85        18.51        46.68        42.44         6.28       108.10 
TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U7 TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT 
       20.02        15.02        42.77         0.07         0.07        26.89 
TCGA-HB-A3YV TCGA-IE-A4EH TCGA-IE-A4EJ TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3KA 
        4.54        21.37         3.22        28.21       143.41        13.58 
TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W 
       22.62         6.25         1.05        11.70 

$`DEL PEAK  5(2Q37.3) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L3 TCGA-DX-A1L4 
       14.04         2.04        27.19        24.49        31.56        29.85 
TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 
       74.66         5.23        76.37        66.87        27.78        60.30 
TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT 
        8.55         9.70        53.26        43.04         9.01        23.08 
TCGA-DX-A3LU TCGA-DX-A3LY TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ 
       70.49        17.10        17.75         4.50         0.46         0.10 
TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK 
        4.14        12.62         8.94         1.38        25.22        31.76 
TCGA-IS-A3K8 TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-MO-A47R TCGA-PC-A5DK 
      116.88        73.28         5.88         0.10        75.48 

  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                         0.07                          0.10 
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                       143.41                        116.88 
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                       16.765                        23.080 
[1] "0.1 - 143.4 (16.8)" "0.1 - 116.9 (23.1)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK  5(2Q37.3) MUTATED"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK  5(2Q37.3) MUTATED"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK  5(2Q37.3) MUTATED"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK  5(2Q37.3) MUTATED"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-PC-A5DK 
"DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK  5(2Q37.3) MUTATED"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK  5(2Q37.3) MUTATED"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK  5(2Q37.3) MUTATED"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK  5(2Q37.3) MUTATED"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-PC-A5DK 
"DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK  5(2Q37.3) MUTATED"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK  5(2Q37.3) MUTATED"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK  5(2Q37.3) MUTATED"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK  5(2Q37.3) MUTATED"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-PC-A5DK 
"DEL PEAK  5(2Q37.3) WILD-TYPE" 
[1] "hr=" "1.1"
D18V2, continuous
D18V3, binary
                               cls
clus                             0  1
  DEL PEAK  5(2Q37.3) MUTATED   12 10
  DEL PEAK  5(2Q37.3) WILD-TYPE 16 19
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(2Q37.3) MUTATED     12   10
  DEL PEAK  5(2Q37.3) WILD-TYPE   16   19
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  FEMALE                          12                            16
  MALE                            10                            19

Clustering(19) Variable = DEL PEAK  6(3P21.31) MUTATION ANALYSIS
D19V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  6(3P21.31) MUTATED   10  6
  DEL PEAK  6(3P21.31) WILD-TYPE 29 12
  DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE 
                            16                             41 
  DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE 
                             6                             12 
$`DEL PEAK  6(3P21.31) MUTATED`
TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L2 TCGA-DX-A3LS TCGA-DX-A3LY 
       27.19        12.85        18.51        42.44         9.01        17.10 
TCGA-DX-A3M1 TCGA-FX-A3RE TCGA-HB-A3YV TCGA-IE-A4EJ TCGA-IS-A3K7 TCGA-IW-A3M5 
       20.02         0.07         4.54         3.22       143.41         5.88 
TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-MO-A47R 
       22.62         6.25         1.05         0.10 

$`DEL PEAK  6(3P21.31) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A1L4 
       14.04         2.04        24.49        46.68        31.56        29.85 
TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z 
       74.66         5.23        76.37        66.87         6.28        27.78 
TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LT 
       60.30         8.55         9.70        53.26        43.04        23.08 
TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 
       70.49       108.10        15.02        17.75        42.77         4.50 
TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A43Z TCGA-HB-A5W3 
        0.46         0.10         0.07        26.89         4.14        12.62 
TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 
       21.37         8.94         1.38        25.22        31.76        28.21 
TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-KF-A41W TCGA-PC-A5DK 
      116.88        13.58        73.28        11.70        75.48 

  DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE 
                          0.07                           0.07 
  DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE 
                        143.41                         116.88 
  DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE 
                         10.93                          24.49 
[1] "0.1 - 143.4 (10.9)" "0.1 - 116.9 (24.5)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-PC-A5DK 
"DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-PC-A5DK 
"DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-PC-A5DK 
"DEL PEAK  6(3P21.31) WILD-TYPE" 
[1] "hr=" "2"  
D19V2, continuous
D19V3, binary
                                cls
clus                              0  1
  DEL PEAK  6(3P21.31) MUTATED   10  6
  DEL PEAK  6(3P21.31) WILD-TYPE 18 23
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  6(3P21.31) MUTATED     10    6
  DEL PEAK  6(3P21.31) WILD-TYPE   18   23
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  FEMALE                           10                             18
  MALE                              6                             23

Clustering(20) Variable = DEL PEAK  7(3Q25.2) MUTATION ANALYSIS
D20V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  7(3Q25.2) MUTATED   13  4
  DEL PEAK  7(3Q25.2) WILD-TYPE 26 14
  DEL PEAK  7(3Q25.2) MUTATED DEL PEAK  7(3Q25.2) WILD-TYPE 
                           17                            40 
  DEL PEAK  7(3Q25.2) MUTATED DEL PEAK  7(3Q25.2) WILD-TYPE 
                            4                            14 
$`DEL PEAK  7(3Q25.2) MUTATED`
TCGA-DX-A1KW TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A23R TCGA-DX-A23Y 
        2.04        18.51        46.68        42.44        74.66         6.28 
TCGA-DX-A3LT TCGA-DX-A3M1 TCGA-FX-A2QS TCGA-FX-A3RE TCGA-HB-A3YV TCGA-HB-A43Z 
       23.08        20.02         0.46         0.07         4.54         4.14 
TCGA-IE-A4EJ TCGA-IS-A3K7 TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-MO-A47R 
        3.22       143.41        73.28         5.88         0.10 

$`DEL PEAK  7(3Q25.2) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L3 TCGA-DX-A1L4 
       14.04        27.19        12.85        24.49        31.56        29.85 
TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ 
        5.23        76.37        66.87        27.78        60.30         8.55 
TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU TCGA-DX-A3LW 
        9.70        53.26        43.04         9.01        70.49       108.10 
TCGA-DX-A3LY TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A3NJ 
       17.10        15.02        17.75        42.77         4.50         0.10 
TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EK 
        0.07        26.89        12.62        21.37         8.94         1.38 
TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M6 
       25.22        31.76        28.21       116.88        13.58        22.62 
TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W TCGA-PC-A5DK 
        6.25         1.05        11.70        75.48 

  DEL PEAK  7(3Q25.2) MUTATED DEL PEAK  7(3Q25.2) WILD-TYPE 
                         0.07                          0.07 
  DEL PEAK  7(3Q25.2) MUTATED DEL PEAK  7(3Q25.2) WILD-TYPE 
                       143.41                        116.88 
  DEL PEAK  7(3Q25.2) MUTATED DEL PEAK  7(3Q25.2) WILD-TYPE 
                        6.280                        21.995 
[1] "0.1 - 143.4 (6.3)"  "0.1 - 116.9 (22.0)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  7(3Q25.2) WILD-TYPE"   "DEL PEAK  7(3Q25.2) MUTATED" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK  7(3Q25.2) WILD-TYPE"   "DEL PEAK  7(3Q25.2) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK  7(3Q25.2) MUTATED"   "DEL PEAK  7(3Q25.2) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK  7(3Q25.2) MUTATED" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK  7(3Q25.2) MUTATED" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "DEL PEAK  7(3Q25.2) MUTATED" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK  7(3Q25.2) MUTATED" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK  7(3Q25.2) WILD-TYPE"   "DEL PEAK  7(3Q25.2) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  7(3Q25.2) WILD-TYPE"   "DEL PEAK  7(3Q25.2) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK  7(3Q25.2) MUTATED"   "DEL PEAK  7(3Q25.2) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK  7(3Q25.2) WILD-TYPE"   "DEL PEAK  7(3Q25.2) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK  7(3Q25.2) MUTATED" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK  7(3Q25.2) WILD-TYPE"   "DEL PEAK  7(3Q25.2) MUTATED" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK  7(3Q25.2) MUTATED" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"DEL PEAK  7(3Q25.2) WILD-TYPE"   "DEL PEAK  7(3Q25.2) MUTATED" 
                   TCGA-PC-A5DK 
"DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  7(3Q25.2) WILD-TYPE"   "DEL PEAK  7(3Q25.2) MUTATED" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK  7(3Q25.2) WILD-TYPE"   "DEL PEAK  7(3Q25.2) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK  7(3Q25.2) MUTATED"   "DEL PEAK  7(3Q25.2) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK  7(3Q25.2) MUTATED" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK  7(3Q25.2) MUTATED" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "DEL PEAK  7(3Q25.2) MUTATED" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK  7(3Q25.2) MUTATED" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK  7(3Q25.2) WILD-TYPE"   "DEL PEAK  7(3Q25.2) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  7(3Q25.2) WILD-TYPE"   "DEL PEAK  7(3Q25.2) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK  7(3Q25.2) MUTATED"   "DEL PEAK  7(3Q25.2) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK  7(3Q25.2) WILD-TYPE"   "DEL PEAK  7(3Q25.2) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK  7(3Q25.2) MUTATED" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK  7(3Q25.2) WILD-TYPE"   "DEL PEAK  7(3Q25.2) MUTATED" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK  7(3Q25.2) MUTATED" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"DEL PEAK  7(3Q25.2) WILD-TYPE"   "DEL PEAK  7(3Q25.2) MUTATED" 
                   TCGA-PC-A5DK 
"DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  7(3Q25.2) WILD-TYPE"   "DEL PEAK  7(3Q25.2) MUTATED" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK  7(3Q25.2) WILD-TYPE"   "DEL PEAK  7(3Q25.2) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK  7(3Q25.2) MUTATED"   "DEL PEAK  7(3Q25.2) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK  7(3Q25.2) MUTATED" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK  7(3Q25.2) MUTATED" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "DEL PEAK  7(3Q25.2) MUTATED" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK  7(3Q25.2) MUTATED" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK  7(3Q25.2) WILD-TYPE"   "DEL PEAK  7(3Q25.2) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  7(3Q25.2) WILD-TYPE"   "DEL PEAK  7(3Q25.2) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK  7(3Q25.2) MUTATED"   "DEL PEAK  7(3Q25.2) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK  7(3Q25.2) WILD-TYPE"   "DEL PEAK  7(3Q25.2) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK  7(3Q25.2) MUTATED" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK  7(3Q25.2) WILD-TYPE"   "DEL PEAK  7(3Q25.2) MUTATED" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK  7(3Q25.2) MUTATED" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK  7(3Q25.2) WILD-TYPE" "DEL PEAK  7(3Q25.2) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"DEL PEAK  7(3Q25.2) WILD-TYPE"   "DEL PEAK  7(3Q25.2) MUTATED" 
                   TCGA-PC-A5DK 
"DEL PEAK  7(3Q25.2) WILD-TYPE" 
[1] "hr=" "1.1"
D20V2, continuous
D20V3, binary
                               cls
clus                             0  1
  DEL PEAK  7(3Q25.2) MUTATED    9  8
  DEL PEAK  7(3Q25.2) WILD-TYPE 19 21
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(3Q25.2) MUTATED      9    8
  DEL PEAK  7(3Q25.2) WILD-TYPE   19   21
        clus
vv       DEL PEAK  7(3Q25.2) MUTATED DEL PEAK  7(3Q25.2) WILD-TYPE
  FEMALE                           9                            19
  MALE                             8                            21

Clustering(21) Variable = DEL PEAK  8(4Q34.3) MUTATION ANALYSIS
D21V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  8(4Q34.3) MUTATED   18  8
  DEL PEAK  8(4Q34.3) WILD-TYPE 21 10
  DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE 
                           26                            31 
  DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE 
                            8                            10 
$`DEL PEAK  8(4Q34.3) MUTATED`
TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L1 TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A2IZ 
       27.19        12.85        46.68        74.66         6.28         8.55 
TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LW TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-HB-A2OT 
        9.01        23.08       108.10         4.50         0.46        26.89 
TCGA-HB-A43Z TCGA-IE-A4EH TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK 
        4.14        21.37         3.22         1.38        25.22        31.76 
TCGA-IS-A3K7 TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF 
      143.41        13.58         5.88        22.62         6.25         1.05 
TCGA-KF-A41W TCGA-MO-A47R 
       11.70         0.10 

$`DEL PEAK  8(4Q34.3) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L2 TCGA-DX-A1L3 
       14.04         2.04        24.49        18.51        42.44        31.56 
TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 
       29.85         5.23        76.37        66.87        27.78        60.30 
TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LU TCGA-DX-A3LY TCGA-DX-A3M1 
        9.70        53.26        43.04        70.49        17.10        20.02 
TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G 
       15.02        17.75        42.77         0.10         0.07         0.07 
TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IE-A4EI TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IW-A3M4 
        4.54        12.62         8.94        28.21       116.88        73.28 
TCGA-PC-A5DK 
       75.48 

  DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE 
                         0.10                          0.07 
  DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE 
                       143.41                        116.88 
  DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE 
                       12.275                        24.490 
[1] "0.1 - 143.4 (12.3)" "0.1 - 116.9 (24.5)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  8(4Q34.3) WILD-TYPE" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK  8(4Q34.3) MUTATED"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK  8(4Q34.3) WILD-TYPE" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK  8(4Q34.3) MUTATED" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  8(4Q34.3) WILD-TYPE" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK  8(4Q34.3) MUTATED" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  8(4Q34.3) WILD-TYPE" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK  8(4Q34.3) MUTATED" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  8(4Q34.3) WILD-TYPE"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  8(4Q34.3) WILD-TYPE" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  8(4Q34.3) WILD-TYPE"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "DEL PEAK  8(4Q34.3) MUTATED" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK  8(4Q34.3) MUTATED" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"DEL PEAK  8(4Q34.3) WILD-TYPE" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  8(4Q34.3) WILD-TYPE" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
  "DEL PEAK  8(4Q34.3) MUTATED"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  8(4Q34.3) WILD-TYPE" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"DEL PEAK  8(4Q34.3) WILD-TYPE"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK  8(4Q34.3) WILD-TYPE"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK  8(4Q34.3) WILD-TYPE"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK  8(4Q34.3) WILD-TYPE"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
  "DEL PEAK  8(4Q34.3) MUTATED"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "DEL PEAK  8(4Q34.3) MUTATED" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK  8(4Q34.3) MUTATED" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK  8(4Q34.3) MUTATED" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK  8(4Q34.3) MUTATED"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK  8(4Q34.3) MUTATED"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
  "DEL PEAK  8(4Q34.3) MUTATED"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-PC-A5DK 
"DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  8(4Q34.3) WILD-TYPE" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK  8(4Q34.3) MUTATED"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK  8(4Q34.3) WILD-TYPE" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK  8(4Q34.3) MUTATED" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  8(4Q34.3) WILD-TYPE" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK  8(4Q34.3) MUTATED" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  8(4Q34.3) WILD-TYPE" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK  8(4Q34.3) MUTATED" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  8(4Q34.3) WILD-TYPE"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  8(4Q34.3) WILD-TYPE" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  8(4Q34.3) WILD-TYPE"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "DEL PEAK  8(4Q34.3) MUTATED" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK  8(4Q34.3) MUTATED" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"DEL PEAK  8(4Q34.3) WILD-TYPE" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  8(4Q34.3) WILD-TYPE" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
  "DEL PEAK  8(4Q34.3) MUTATED"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  8(4Q34.3) WILD-TYPE" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"DEL PEAK  8(4Q34.3) WILD-TYPE"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK  8(4Q34.3) WILD-TYPE"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK  8(4Q34.3) WILD-TYPE"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK  8(4Q34.3) WILD-TYPE"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
  "DEL PEAK  8(4Q34.3) MUTATED"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "DEL PEAK  8(4Q34.3) MUTATED" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK  8(4Q34.3) MUTATED" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK  8(4Q34.3) MUTATED" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK  8(4Q34.3) MUTATED"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK  8(4Q34.3) MUTATED"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
  "DEL PEAK  8(4Q34.3) MUTATED"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-PC-A5DK 
"DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  8(4Q34.3) WILD-TYPE" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK  8(4Q34.3) MUTATED"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK  8(4Q34.3) WILD-TYPE" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK  8(4Q34.3) MUTATED" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  8(4Q34.3) WILD-TYPE" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK  8(4Q34.3) MUTATED" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  8(4Q34.3) WILD-TYPE" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK  8(4Q34.3) MUTATED" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  8(4Q34.3) WILD-TYPE"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  8(4Q34.3) WILD-TYPE" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  8(4Q34.3) WILD-TYPE"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "DEL PEAK  8(4Q34.3) MUTATED" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK  8(4Q34.3) MUTATED" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"DEL PEAK  8(4Q34.3) WILD-TYPE" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  8(4Q34.3) WILD-TYPE" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
  "DEL PEAK  8(4Q34.3) MUTATED"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  8(4Q34.3) WILD-TYPE" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"DEL PEAK  8(4Q34.3) WILD-TYPE"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK  8(4Q34.3) WILD-TYPE"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK  8(4Q34.3) WILD-TYPE"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK  8(4Q34.3) WILD-TYPE"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
  "DEL PEAK  8(4Q34.3) MUTATED"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "DEL PEAK  8(4Q34.3) MUTATED" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK  8(4Q34.3) MUTATED" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK  8(4Q34.3) MUTATED" "DEL PEAK  8(4Q34.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK  8(4Q34.3) MUTATED"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK  8(4Q34.3) MUTATED"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
  "DEL PEAK  8(4Q34.3) MUTATED"   "DEL PEAK  8(4Q34.3) MUTATED" 
                   TCGA-PC-A5DK 
"DEL PEAK  8(4Q34.3) WILD-TYPE" 
[1] "hr=" "1.3"
D21V2, continuous
D21V3, binary
                               cls
clus                             0  1
  DEL PEAK  8(4Q34.3) MUTATED   17  9
  DEL PEAK  8(4Q34.3) WILD-TYPE 11 20
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(4Q34.3) MUTATED     17    9
  DEL PEAK  8(4Q34.3) WILD-TYPE   11   20
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  FEMALE                          17                            11
  MALE                             9                            20

Clustering(22) Variable = DEL PEAK  9(6P24.3) MUTATION ANALYSIS
D22V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  9(6P24.3) MUTATED   11  6
  DEL PEAK  9(6P24.3) WILD-TYPE 28 12
  DEL PEAK  9(6P24.3) MUTATED DEL PEAK  9(6P24.3) WILD-TYPE 
                           17                            40 
  DEL PEAK  9(6P24.3) MUTATED DEL PEAK  9(6P24.3) WILD-TYPE 
                            6                            12 
$`DEL PEAK  9(6P24.3) MUTATED`
TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A3LT TCGA-DX-A3LY 
       24.49        18.51        74.66         6.28        23.08        17.10 
TCGA-DX-A3M1 TCGA-FX-A48G TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EI 
       20.02         0.07         4.54         4.14        12.62         8.94 
TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IW-A3M6 TCGA-JV-A5VF 
       31.76        28.21       143.41        22.62         1.05 

$`DEL PEAK  9(6P24.3) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L1 TCGA-DX-A1L2 
       14.04         2.04        27.19        12.85        46.68        42.44 
TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z 
       31.56        29.85         5.23        76.37        66.87        27.78 
TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS 
       60.30         8.55         9.70        53.26        43.04         9.01 
TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 
       70.49       108.10        15.02        17.75        42.77         4.50 
TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-HB-A2OT TCGA-IE-A4EH TCGA-IE-A4EJ 
        0.46         0.10         0.07        26.89        21.37         3.22 
TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 
        1.38        25.22       116.88        13.58        73.28         5.88 
TCGA-JV-A5VE TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
        6.25        11.70         0.10        75.48 

  DEL PEAK  9(6P24.3) MUTATED DEL PEAK  9(6P24.3) WILD-TYPE 
                         0.07                          0.07 
  DEL PEAK  9(6P24.3) MUTATED DEL PEAK  9(6P24.3) WILD-TYPE 
                       143.41                        116.88 
  DEL PEAK  9(6P24.3) MUTATED DEL PEAK  9(6P24.3) WILD-TYPE 
                        18.51                         19.56 
[1] "0.1 - 143.4 (18.5)" "0.1 - 116.9 (19.6)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "DEL PEAK  9(6P24.3) MUTATED"   "DEL PEAK  9(6P24.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK  9(6P24.3) MUTATED" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK  9(6P24.3) MUTATED" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "DEL PEAK  9(6P24.3) MUTATED" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK  9(6P24.3) WILD-TYPE"   "DEL PEAK  9(6P24.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK  9(6P24.3) MUTATED" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK  9(6P24.3) MUTATED" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK  9(6P24.3) MUTATED"   "DEL PEAK  9(6P24.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "DEL PEAK  9(6P24.3) MUTATED" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "DEL PEAK  9(6P24.3) MUTATED" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "DEL PEAK  9(6P24.3) MUTATED"   "DEL PEAK  9(6P24.3) MUTATED" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK  9(6P24.3) MUTATED" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK  9(6P24.3) WILD-TYPE"   "DEL PEAK  9(6P24.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK  9(6P24.3) WILD-TYPE"   "DEL PEAK  9(6P24.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-PC-A5DK 
"DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "DEL PEAK  9(6P24.3) MUTATED"   "DEL PEAK  9(6P24.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK  9(6P24.3) MUTATED" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK  9(6P24.3) MUTATED" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "DEL PEAK  9(6P24.3) MUTATED" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK  9(6P24.3) WILD-TYPE"   "DEL PEAK  9(6P24.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK  9(6P24.3) MUTATED" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK  9(6P24.3) MUTATED" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK  9(6P24.3) MUTATED"   "DEL PEAK  9(6P24.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "DEL PEAK  9(6P24.3) MUTATED" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "DEL PEAK  9(6P24.3) MUTATED" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "DEL PEAK  9(6P24.3) MUTATED"   "DEL PEAK  9(6P24.3) MUTATED" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK  9(6P24.3) MUTATED" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK  9(6P24.3) WILD-TYPE"   "DEL PEAK  9(6P24.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK  9(6P24.3) WILD-TYPE"   "DEL PEAK  9(6P24.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-PC-A5DK 
"DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "DEL PEAK  9(6P24.3) MUTATED"   "DEL PEAK  9(6P24.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK  9(6P24.3) MUTATED" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK  9(6P24.3) MUTATED" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "DEL PEAK  9(6P24.3) MUTATED" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK  9(6P24.3) WILD-TYPE"   "DEL PEAK  9(6P24.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK  9(6P24.3) MUTATED" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK  9(6P24.3) MUTATED" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK  9(6P24.3) MUTATED"   "DEL PEAK  9(6P24.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "DEL PEAK  9(6P24.3) MUTATED" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "DEL PEAK  9(6P24.3) MUTATED" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "DEL PEAK  9(6P24.3) MUTATED"   "DEL PEAK  9(6P24.3) MUTATED" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK  9(6P24.3) MUTATED" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK  9(6P24.3) WILD-TYPE"   "DEL PEAK  9(6P24.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK  9(6P24.3) WILD-TYPE"   "DEL PEAK  9(6P24.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-PC-A5DK 
"DEL PEAK  9(6P24.3) WILD-TYPE" 
[1] "hr=" "1.3"
D22V2, continuous
D22V3, binary
                               cls
clus                             0  1
  DEL PEAK  9(6P24.3) MUTATED   10  7
  DEL PEAK  9(6P24.3) WILD-TYPE 18 22
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(6P24.3) MUTATED     10    7
  DEL PEAK  9(6P24.3) WILD-TYPE   18   22
        clus
vv       DEL PEAK  9(6P24.3) MUTATED DEL PEAK  9(6P24.3) WILD-TYPE
  FEMALE                          10                            18
  MALE                             7                            22

Clustering(23) Variable = DEL PEAK 10(6Q15) MUTATION ANALYSIS
D23V1, survival
                             sevent
clus2                          0  1
  DEL PEAK 10(6Q15) MUTATED    7  2
  DEL PEAK 10(6Q15) WILD-TYPE 32 16
  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE 
                          9                          48 
  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE 
                          2                          16 
$`DEL PEAK 10(6Q15) MUTATED`
TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A3M1 TCGA-DX-A3U7 TCGA-HB-A43Z TCGA-IE-A4EJ 
       12.85        24.49        20.02        42.77         4.14         3.22 
TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-JV-A5VE 
       25.22        31.76         6.25 

$`DEL PEAK 10(6Q15) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 
       14.04         2.04        27.19        18.51        46.68        42.44 
TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V 
       31.56        29.85        74.66         5.23        76.37        66.87 
TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 
        6.28        27.78        60.30         8.55         9.70        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY 
       43.04         9.01        23.08        70.49       108.10        17.10 
TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE 
       15.02        17.75         4.50         0.46         0.10         0.07 
TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI 
        0.07        26.89         4.54        12.62        21.37         8.94 
TCGA-IE-A4EK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 
        1.38        28.21       143.41       116.88        13.58        73.28 
TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VF TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
        5.88        22.62         1.05        11.70         0.10        75.48 

  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE 
                       3.22                        0.07 
  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE 
                      42.77                      143.41 
  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE 
                      20.02                       18.13 
[1] "3.2 - 42.8 (20.0)"  "0.1 - 143.4 (18.1)"
                 TCGA-DX-A1KU                  TCGA-DX-A1KW 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A1KX                  TCGA-DX-A1KY 
"DEL PEAK 10(6Q15) WILD-TYPE"   "DEL PEAK 10(6Q15) MUTATED" 
                 TCGA-DX-A1KZ                  TCGA-DX-A1L0 
  "DEL PEAK 10(6Q15) MUTATED" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A1L1                  TCGA-DX-A1L2 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A1L3                  TCGA-DX-A1L4 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A23R                  TCGA-DX-A23T 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A23U                  TCGA-DX-A23V 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A23Y                  TCGA-DX-A23Z 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A240                  TCGA-DX-A2IZ 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A2J0                  TCGA-DX-A2J1 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A2J4                  TCGA-DX-A3LS 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A3LT                  TCGA-DX-A3LU 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A3LW                  TCGA-DX-A3LY 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A3M1                  TCGA-DX-A3U5 
  "DEL PEAK 10(6Q15) MUTATED" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A3U6                  TCGA-DX-A3U7 
"DEL PEAK 10(6Q15) WILD-TYPE"   "DEL PEAK 10(6Q15) MUTATED" 
                 TCGA-DX-A3U8                  TCGA-FX-A2QS 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-FX-A3NJ                  TCGA-FX-A3RE 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-FX-A48G                  TCGA-HB-A2OT 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-HB-A3YV                  TCGA-HB-A43Z 
"DEL PEAK 10(6Q15) WILD-TYPE"   "DEL PEAK 10(6Q15) MUTATED" 
                 TCGA-HB-A5W3                  TCGA-IE-A4EH 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-IE-A4EI                  TCGA-IE-A4EJ 
"DEL PEAK 10(6Q15) WILD-TYPE"   "DEL PEAK 10(6Q15) MUTATED" 
                 TCGA-IE-A4EK                  TCGA-IF-A4AJ 
"DEL PEAK 10(6Q15) WILD-TYPE"   "DEL PEAK 10(6Q15) MUTATED" 
                 TCGA-IF-A4AK                  TCGA-IS-A3K6 
  "DEL PEAK 10(6Q15) MUTATED" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-IS-A3K7                  TCGA-IS-A3K8 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-IS-A3KA                  TCGA-IW-A3M4 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-IW-A3M5                  TCGA-IW-A3M6 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-JV-A5VE                  TCGA-JV-A5VF 
  "DEL PEAK 10(6Q15) MUTATED" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-KF-A41W                  TCGA-MO-A47R 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-PC-A5DK 
"DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A1KU                  TCGA-DX-A1KW 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A1KX                  TCGA-DX-A1KY 
"DEL PEAK 10(6Q15) WILD-TYPE"   "DEL PEAK 10(6Q15) MUTATED" 
                 TCGA-DX-A1KZ                  TCGA-DX-A1L0 
  "DEL PEAK 10(6Q15) MUTATED" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A1L1                  TCGA-DX-A1L2 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A1L3                  TCGA-DX-A1L4 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A23R                  TCGA-DX-A23T 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A23U                  TCGA-DX-A23V 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A23Y                  TCGA-DX-A23Z 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A240                  TCGA-DX-A2IZ 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A2J0                  TCGA-DX-A2J1 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A2J4                  TCGA-DX-A3LS 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A3LT                  TCGA-DX-A3LU 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A3LW                  TCGA-DX-A3LY 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A3M1                  TCGA-DX-A3U5 
  "DEL PEAK 10(6Q15) MUTATED" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A3U6                  TCGA-DX-A3U7 
"DEL PEAK 10(6Q15) WILD-TYPE"   "DEL PEAK 10(6Q15) MUTATED" 
                 TCGA-DX-A3U8                  TCGA-FX-A2QS 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-FX-A3NJ                  TCGA-FX-A3RE 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-FX-A48G                  TCGA-HB-A2OT 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-HB-A3YV                  TCGA-HB-A43Z 
"DEL PEAK 10(6Q15) WILD-TYPE"   "DEL PEAK 10(6Q15) MUTATED" 
                 TCGA-HB-A5W3                  TCGA-IE-A4EH 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-IE-A4EI                  TCGA-IE-A4EJ 
"DEL PEAK 10(6Q15) WILD-TYPE"   "DEL PEAK 10(6Q15) MUTATED" 
                 TCGA-IE-A4EK                  TCGA-IF-A4AJ 
"DEL PEAK 10(6Q15) WILD-TYPE"   "DEL PEAK 10(6Q15) MUTATED" 
                 TCGA-IF-A4AK                  TCGA-IS-A3K6 
  "DEL PEAK 10(6Q15) MUTATED" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-IS-A3K7                  TCGA-IS-A3K8 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-IS-A3KA                  TCGA-IW-A3M4 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-IW-A3M5                  TCGA-IW-A3M6 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-JV-A5VE                  TCGA-JV-A5VF 
  "DEL PEAK 10(6Q15) MUTATED" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-KF-A41W                  TCGA-MO-A47R 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-PC-A5DK 
"DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A1KU                  TCGA-DX-A1KW 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A1KX                  TCGA-DX-A1KY 
"DEL PEAK 10(6Q15) WILD-TYPE"   "DEL PEAK 10(6Q15) MUTATED" 
                 TCGA-DX-A1KZ                  TCGA-DX-A1L0 
  "DEL PEAK 10(6Q15) MUTATED" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A1L1                  TCGA-DX-A1L2 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A1L3                  TCGA-DX-A1L4 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A23R                  TCGA-DX-A23T 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A23U                  TCGA-DX-A23V 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A23Y                  TCGA-DX-A23Z 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A240                  TCGA-DX-A2IZ 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A2J0                  TCGA-DX-A2J1 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A2J4                  TCGA-DX-A3LS 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A3LT                  TCGA-DX-A3LU 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A3LW                  TCGA-DX-A3LY 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A3M1                  TCGA-DX-A3U5 
  "DEL PEAK 10(6Q15) MUTATED" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-DX-A3U6                  TCGA-DX-A3U7 
"DEL PEAK 10(6Q15) WILD-TYPE"   "DEL PEAK 10(6Q15) MUTATED" 
                 TCGA-DX-A3U8                  TCGA-FX-A2QS 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-FX-A3NJ                  TCGA-FX-A3RE 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-FX-A48G                  TCGA-HB-A2OT 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-HB-A3YV                  TCGA-HB-A43Z 
"DEL PEAK 10(6Q15) WILD-TYPE"   "DEL PEAK 10(6Q15) MUTATED" 
                 TCGA-HB-A5W3                  TCGA-IE-A4EH 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-IE-A4EI                  TCGA-IE-A4EJ 
"DEL PEAK 10(6Q15) WILD-TYPE"   "DEL PEAK 10(6Q15) MUTATED" 
                 TCGA-IE-A4EK                  TCGA-IF-A4AJ 
"DEL PEAK 10(6Q15) WILD-TYPE"   "DEL PEAK 10(6Q15) MUTATED" 
                 TCGA-IF-A4AK                  TCGA-IS-A3K6 
  "DEL PEAK 10(6Q15) MUTATED" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-IS-A3K7                  TCGA-IS-A3K8 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-IS-A3KA                  TCGA-IW-A3M4 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-IW-A3M5                  TCGA-IW-A3M6 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-JV-A5VE                  TCGA-JV-A5VF 
  "DEL PEAK 10(6Q15) MUTATED" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-KF-A41W                  TCGA-MO-A47R 
"DEL PEAK 10(6Q15) WILD-TYPE" "DEL PEAK 10(6Q15) WILD-TYPE" 
                 TCGA-PC-A5DK 
"DEL PEAK 10(6Q15) WILD-TYPE" 
[1] "hr=" "1.2"
D23V2, continuous
D23V3, binary
                             cls
clus                           0  1
  DEL PEAK 10(6Q15) MUTATED    4  5
  DEL PEAK 10(6Q15) WILD-TYPE 24 24
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 10(6Q15) MUTATED      4    5
  DEL PEAK 10(6Q15) WILD-TYPE   24   24
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  FEMALE                         4                          24
  MALE                           5                          24

Clustering(24) Variable = DEL PEAK 11(7Q36.3) MUTATION ANALYSIS
D24V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 11(7Q36.3) MUTATED    8  5
  DEL PEAK 11(7Q36.3) WILD-TYPE 31 13
  DEL PEAK 11(7Q36.3) MUTATED DEL PEAK 11(7Q36.3) WILD-TYPE 
                           13                            44 
  DEL PEAK 11(7Q36.3) MUTATED DEL PEAK 11(7Q36.3) WILD-TYPE 
                            5                            13 
$`DEL PEAK 11(7Q36.3) MUTATED`
TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A3LY 
       27.19        18.51        29.85        74.66         6.28        17.10 
TCGA-DX-A3U7 TCGA-HB-A3YV TCGA-HB-A43Z TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IW-A3M5 
       42.77         4.54         4.14        25.22        31.76         5.88 
TCGA-IW-A3M6 
       22.62 

$`DEL PEAK 11(7Q36.3) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L2 
       14.04         2.04        12.85        24.49        46.68        42.44 
TCGA-DX-A1L3 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 
       31.56         5.23        76.37        66.87        27.78        60.30 
TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT 
        8.55         9.70        53.26        43.04         9.01        23.08 
TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U8 
       70.49       108.10        20.02        15.02        17.75         4.50 
TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A5W3 
        0.46         0.10         0.07         0.07        26.89        12.62 
TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IS-A3K6 TCGA-IS-A3K7 
       21.37         8.94         3.22         1.38        28.21       143.41 
TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W 
      116.88        13.58        73.28         6.25         1.05        11.70 
TCGA-MO-A47R TCGA-PC-A5DK 
        0.10        75.48 

  DEL PEAK 11(7Q36.3) MUTATED DEL PEAK 11(7Q36.3) WILD-TYPE 
                         4.14                          0.07 
  DEL PEAK 11(7Q36.3) MUTATED DEL PEAK 11(7Q36.3) WILD-TYPE 
                        74.66                        143.41 
  DEL PEAK 11(7Q36.3) MUTATED DEL PEAK 11(7Q36.3) WILD-TYPE 
                       22.620                        16.385 
[1] "4.1 - 74.7 (22.6)"  "0.1 - 143.4 (16.4)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK 11(7Q36.3) MUTATED" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK 11(7Q36.3) WILD-TYPE"   "DEL PEAK 11(7Q36.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 11(7Q36.3) WILD-TYPE"   "DEL PEAK 11(7Q36.3) MUTATED" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK 11(7Q36.3) MUTATED" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK 11(7Q36.3) MUTATED" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK 11(7Q36.3) WILD-TYPE"   "DEL PEAK 11(7Q36.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 11(7Q36.3) WILD-TYPE"   "DEL PEAK 11(7Q36.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 11(7Q36.3) MUTATED"   "DEL PEAK 11(7Q36.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 11(7Q36.3) WILD-TYPE"   "DEL PEAK 11(7Q36.3) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "DEL PEAK 11(7Q36.3) MUTATED" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK 11(7Q36.3) MUTATED"   "DEL PEAK 11(7Q36.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-PC-A5DK 
"DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK 11(7Q36.3) MUTATED" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK 11(7Q36.3) WILD-TYPE"   "DEL PEAK 11(7Q36.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 11(7Q36.3) WILD-TYPE"   "DEL PEAK 11(7Q36.3) MUTATED" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK 11(7Q36.3) MUTATED" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK 11(7Q36.3) MUTATED" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK 11(7Q36.3) WILD-TYPE"   "DEL PEAK 11(7Q36.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 11(7Q36.3) WILD-TYPE"   "DEL PEAK 11(7Q36.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 11(7Q36.3) MUTATED"   "DEL PEAK 11(7Q36.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 11(7Q36.3) WILD-TYPE"   "DEL PEAK 11(7Q36.3) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "DEL PEAK 11(7Q36.3) MUTATED" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK 11(7Q36.3) MUTATED"   "DEL PEAK 11(7Q36.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-PC-A5DK 
"DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK 11(7Q36.3) MUTATED" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK 11(7Q36.3) WILD-TYPE"   "DEL PEAK 11(7Q36.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 11(7Q36.3) WILD-TYPE"   "DEL PEAK 11(7Q36.3) MUTATED" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK 11(7Q36.3) MUTATED" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK 11(7Q36.3) MUTATED" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK 11(7Q36.3) WILD-TYPE"   "DEL PEAK 11(7Q36.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 11(7Q36.3) WILD-TYPE"   "DEL PEAK 11(7Q36.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 11(7Q36.3) MUTATED"   "DEL PEAK 11(7Q36.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 11(7Q36.3) WILD-TYPE"   "DEL PEAK 11(7Q36.3) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "DEL PEAK 11(7Q36.3) MUTATED" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK 11(7Q36.3) MUTATED"   "DEL PEAK 11(7Q36.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"DEL PEAK 11(7Q36.3) WILD-TYPE" "DEL PEAK 11(7Q36.3) WILD-TYPE" 
                   TCGA-PC-A5DK 
"DEL PEAK 11(7Q36.3) WILD-TYPE" 
[1] "hr=" "1.3"
D24V2, continuous
D24V3, binary
                               cls
clus                             0  1
  DEL PEAK 11(7Q36.3) MUTATED    6  7
  DEL PEAK 11(7Q36.3) WILD-TYPE 22 22
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(7Q36.3) MUTATED      6    7
  DEL PEAK 11(7Q36.3) WILD-TYPE   22   22
        clus
vv       DEL PEAK 11(7Q36.3) MUTATED DEL PEAK 11(7Q36.3) WILD-TYPE
  FEMALE                           6                            22
  MALE                             7                            22

Clustering(25) Variable = DEL PEAK 12(8P23.3) MUTATION ANALYSIS
D25V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 12(8P23.3) MUTATED   13  4
  DEL PEAK 12(8P23.3) WILD-TYPE 26 14
  DEL PEAK 12(8P23.3) MUTATED DEL PEAK 12(8P23.3) WILD-TYPE 
                           17                            40 
  DEL PEAK 12(8P23.3) MUTATED DEL PEAK 12(8P23.3) WILD-TYPE 
                            4                            14 
$`DEL PEAK 12(8P23.3) MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A23Y TCGA-DX-A3LS 
        2.04        27.19        24.49        18.51         6.28         9.01 
TCGA-DX-A3LT TCGA-DX-A3LW TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U7 TCGA-FX-A2QS 
       23.08       108.10        20.02        15.02        42.77         0.46 
TCGA-FX-A3RE TCGA-HB-A3YV TCGA-HB-A43Z TCGA-IS-A3K7 TCGA-JV-A5VE 
        0.07         4.54         4.14       143.41         6.25 

$`DEL PEAK 12(8P23.3) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KY TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 
       14.04        12.85        46.68        42.44        31.56        29.85 
TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 
       74.66         5.23        76.37        66.87        27.78        60.30 
TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LU TCGA-DX-A3LY 
        8.55         9.70        53.26        43.04        70.49        17.10 
TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A3NJ TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A5W3 
       17.75         4.50         0.10         0.07        26.89        12.62 
TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK 
       21.37         8.94         3.22         1.38        25.22        31.76 
TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 
       28.21       116.88        13.58        73.28         5.88        22.62 
TCGA-JV-A5VF TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
        1.05        11.70         0.10        75.48 

  DEL PEAK 12(8P23.3) MUTATED DEL PEAK 12(8P23.3) WILD-TYPE 
                         0.07                          0.07 
  DEL PEAK 12(8P23.3) MUTATED DEL PEAK 12(8P23.3) WILD-TYPE 
                       143.41                        116.88 
  DEL PEAK 12(8P23.3) MUTATED DEL PEAK 12(8P23.3) WILD-TYPE 
                       15.020                        21.995 
[1] "0.1 - 143.4 (15.0)" "0.1 - 116.9 (22.0)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 12(8P23.3) WILD-TYPE"   "DEL PEAK 12(8P23.3) MUTATED" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK 12(8P23.3) MUTATED" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "DEL PEAK 12(8P23.3) MUTATED"   "DEL PEAK 12(8P23.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK 12(8P23.3) MUTATED" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 12(8P23.3) WILD-TYPE"   "DEL PEAK 12(8P23.3) MUTATED" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "DEL PEAK 12(8P23.3) MUTATED" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK 12(8P23.3) MUTATED" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 12(8P23.3) MUTATED"   "DEL PEAK 12(8P23.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 12(8P23.3) WILD-TYPE"   "DEL PEAK 12(8P23.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK 12(8P23.3) WILD-TYPE"   "DEL PEAK 12(8P23.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 12(8P23.3) WILD-TYPE"   "DEL PEAK 12(8P23.3) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 12(8P23.3) MUTATED"   "DEL PEAK 12(8P23.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 12(8P23.3) MUTATED" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK 12(8P23.3) MUTATED" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-PC-A5DK 
"DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 12(8P23.3) WILD-TYPE"   "DEL PEAK 12(8P23.3) MUTATED" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK 12(8P23.3) MUTATED" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "DEL PEAK 12(8P23.3) MUTATED"   "DEL PEAK 12(8P23.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK 12(8P23.3) MUTATED" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 12(8P23.3) WILD-TYPE"   "DEL PEAK 12(8P23.3) MUTATED" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "DEL PEAK 12(8P23.3) MUTATED" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK 12(8P23.3) MUTATED" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 12(8P23.3) MUTATED"   "DEL PEAK 12(8P23.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 12(8P23.3) WILD-TYPE"   "DEL PEAK 12(8P23.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK 12(8P23.3) WILD-TYPE"   "DEL PEAK 12(8P23.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 12(8P23.3) WILD-TYPE"   "DEL PEAK 12(8P23.3) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 12(8P23.3) MUTATED"   "DEL PEAK 12(8P23.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 12(8P23.3) MUTATED" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK 12(8P23.3) MUTATED" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-PC-A5DK 
"DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 12(8P23.3) WILD-TYPE"   "DEL PEAK 12(8P23.3) MUTATED" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK 12(8P23.3) MUTATED" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "DEL PEAK 12(8P23.3) MUTATED"   "DEL PEAK 12(8P23.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK 12(8P23.3) MUTATED" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 12(8P23.3) WILD-TYPE"   "DEL PEAK 12(8P23.3) MUTATED" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "DEL PEAK 12(8P23.3) MUTATED" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK 12(8P23.3) MUTATED" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 12(8P23.3) MUTATED"   "DEL PEAK 12(8P23.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 12(8P23.3) WILD-TYPE"   "DEL PEAK 12(8P23.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK 12(8P23.3) WILD-TYPE"   "DEL PEAK 12(8P23.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 12(8P23.3) WILD-TYPE"   "DEL PEAK 12(8P23.3) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 12(8P23.3) MUTATED"   "DEL PEAK 12(8P23.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 12(8P23.3) MUTATED" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK 12(8P23.3) MUTATED" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"DEL PEAK 12(8P23.3) WILD-TYPE" "DEL PEAK 12(8P23.3) WILD-TYPE" 
                   TCGA-PC-A5DK 
"DEL PEAK 12(8P23.3) WILD-TYPE" 
[1] "hr=" "1.2"
D25V2, continuous
D25V3, binary
                               cls
clus                             0  1
  DEL PEAK 12(8P23.3) MUTATED    7 10
  DEL PEAK 12(8P23.3) WILD-TYPE 21 19
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(8P23.3) MUTATED      7   10
  DEL PEAK 12(8P23.3) WILD-TYPE   21   19
        clus
vv       DEL PEAK 12(8P23.3) MUTATED DEL PEAK 12(8P23.3) WILD-TYPE
  FEMALE                           7                            21
  MALE                            10                            19

Clustering(26) Variable = DEL PEAK 13(9P24.3) MUTATION ANALYSIS
D26V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 13(9P24.3) MUTATED   18  6
  DEL PEAK 13(9P24.3) WILD-TYPE 21 12
  DEL PEAK 13(9P24.3) MUTATED DEL PEAK 13(9P24.3) WILD-TYPE 
                           24                            33 
  DEL PEAK 13(9P24.3) MUTATED DEL PEAK 13(9P24.3) WILD-TYPE 
                            6                            12 
$`DEL PEAK 13(9P24.3) MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A23V TCGA-DX-A23Y 
       14.04        24.49        46.68        42.44        66.87         6.28 
TCGA-DX-A23Z TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 
       27.78         9.01        23.08       108.10        17.10        20.02 
TCGA-DX-A3U5 TCGA-DX-A3U7 TCGA-FX-A2QS TCGA-FX-A3RE TCGA-HB-A2OT TCGA-IE-A4EI 
       15.02        42.77         0.46         0.07        26.89         8.94 
TCGA-IE-A4EJ TCGA-IS-A3K7 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-KF-A41W TCGA-MO-A47R 
        3.22       143.41         5.88        22.62        11.70         0.10 

$`DEL PEAK 13(9P24.3) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L3 TCGA-DX-A1L4 
        2.04        27.19        12.85        18.51        31.56        29.85 
TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 
       74.66         5.23        76.37        60.30         8.55         9.70 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LU TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A3NJ 
       53.26        43.04        70.49        17.75         4.50         0.10 
TCGA-FX-A48G TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EK 
        0.07         4.54         4.14        12.62        21.37         1.38 
TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 
       25.22        31.76        28.21       116.88        13.58        73.28 
TCGA-JV-A5VE TCGA-JV-A5VF TCGA-PC-A5DK 
        6.25         1.05        75.48 

  DEL PEAK 13(9P24.3) MUTATED DEL PEAK 13(9P24.3) WILD-TYPE 
                         0.07                          0.07 
  DEL PEAK 13(9P24.3) MUTATED DEL PEAK 13(9P24.3) WILD-TYPE 
                       143.41                        116.88 
  DEL PEAK 13(9P24.3) MUTATED DEL PEAK 13(9P24.3) WILD-TYPE 
                        18.56                         18.51 
[1] "0.1 - 143.4 (18.6)" "0.1 - 116.9 (18.5)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
  "DEL PEAK 13(9P24.3) MUTATED" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "DEL PEAK 13(9P24.3) MUTATED" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK 13(9P24.3) MUTATED"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 13(9P24.3) WILD-TYPE"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK 13(9P24.3) MUTATED"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 13(9P24.3) WILD-TYPE"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "DEL PEAK 13(9P24.3) MUTATED" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK 13(9P24.3) MUTATED"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 13(9P24.3) MUTATED"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 13(9P24.3) WILD-TYPE"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK 13(9P24.3) WILD-TYPE"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 13(9P24.3) WILD-TYPE"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"DEL PEAK 13(9P24.3) WILD-TYPE"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "DEL PEAK 13(9P24.3) MUTATED"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 13(9P24.3) MUTATED" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK 13(9P24.3) MUTATED"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
  "DEL PEAK 13(9P24.3) MUTATED"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-PC-A5DK 
"DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
  "DEL PEAK 13(9P24.3) MUTATED" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "DEL PEAK 13(9P24.3) MUTATED" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK 13(9P24.3) MUTATED"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 13(9P24.3) WILD-TYPE"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK 13(9P24.3) MUTATED"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 13(9P24.3) WILD-TYPE"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "DEL PEAK 13(9P24.3) MUTATED" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK 13(9P24.3) MUTATED"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 13(9P24.3) MUTATED"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 13(9P24.3) WILD-TYPE"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK 13(9P24.3) WILD-TYPE"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 13(9P24.3) WILD-TYPE"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"DEL PEAK 13(9P24.3) WILD-TYPE"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "DEL PEAK 13(9P24.3) MUTATED"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 13(9P24.3) MUTATED" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK 13(9P24.3) MUTATED"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
  "DEL PEAK 13(9P24.3) MUTATED"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-PC-A5DK 
"DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
  "DEL PEAK 13(9P24.3) MUTATED" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "DEL PEAK 13(9P24.3) MUTATED" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK 13(9P24.3) MUTATED"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 13(9P24.3) WILD-TYPE"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK 13(9P24.3) MUTATED"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 13(9P24.3) WILD-TYPE"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "DEL PEAK 13(9P24.3) MUTATED" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK 13(9P24.3) MUTATED"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 13(9P24.3) MUTATED"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 13(9P24.3) WILD-TYPE"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK 13(9P24.3) WILD-TYPE"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 13(9P24.3) WILD-TYPE"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"DEL PEAK 13(9P24.3) WILD-TYPE"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "DEL PEAK 13(9P24.3) MUTATED"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 13(9P24.3) MUTATED" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK 13(9P24.3) MUTATED"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK 13(9P24.3) WILD-TYPE" "DEL PEAK 13(9P24.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
  "DEL PEAK 13(9P24.3) MUTATED"   "DEL PEAK 13(9P24.3) MUTATED" 
                   TCGA-PC-A5DK 
"DEL PEAK 13(9P24.3) WILD-TYPE" 
[1] "hr=" "1.4"
D26V2, continuous
D26V3, binary
                               cls
clus                             0  1
  DEL PEAK 13(9P24.3) MUTATED   12 12
  DEL PEAK 13(9P24.3) WILD-TYPE 16 17
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 13(9P24.3) MUTATED     12   12
  DEL PEAK 13(9P24.3) WILD-TYPE   16   17
        clus
vv       DEL PEAK 13(9P24.3) MUTATED DEL PEAK 13(9P24.3) WILD-TYPE
  FEMALE                          12                            16
  MALE                            12                            17

Clustering(27) Variable = DEL PEAK 14(9P21.3) MUTATION ANALYSIS
D27V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 14(9P21.3) MUTATED   21  8
  DEL PEAK 14(9P21.3) WILD-TYPE 18 10
  DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE 
                           29                            28 
  DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE 
                            8                            10 
$`DEL PEAK 14(9P21.3) MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 
       14.04        27.19        12.85        24.49        18.51        46.68 
TCGA-DX-A1L2 TCGA-DX-A23R TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A3LS TCGA-DX-A3LW 
       42.44        74.66        66.87         6.28         9.01       108.10 
TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS 
       17.10        20.02        15.02        42.77         4.50         0.46 
TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IS-A3K7 
        0.07         0.07        26.89         8.94         3.22       143.41 
TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
        5.88        22.62        11.70         0.10        75.48 

$`DEL PEAK 14(9P21.3) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23Z 
        2.04        31.56        29.85         5.23        76.37        27.78 
TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LT 
       60.30         8.55         9.70        53.26        43.04        23.08 
TCGA-DX-A3LU TCGA-DX-A3U6 TCGA-FX-A3NJ TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 
       70.49        17.75         0.10         4.54         4.14        12.62 
TCGA-IE-A4EH TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K8 
       21.37         1.38        25.22        31.76        28.21       116.88 
TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-JV-A5VE TCGA-JV-A5VF 
       13.58        73.28         6.25         1.05 

  DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE 
                         0.07                          0.10 
  DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE 
                       143.41                        116.88 
  DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE 
                       17.100                        22.225 
[1] "0.1 - 143.4 (17.1)" "0.1 - 116.9 (22.2)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-PC-A5DK 
  "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-PC-A5DK 
  "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 14(9P21.3) WILD-TYPE"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 14(9P21.3) MUTATED" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK 14(9P21.3) WILD-TYPE" "DEL PEAK 14(9P21.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
  "DEL PEAK 14(9P21.3) MUTATED"   "DEL PEAK 14(9P21.3) MUTATED" 
                   TCGA-PC-A5DK 
  "DEL PEAK 14(9P21.3) MUTATED" 
[1] "hr=" "1.2"
D27V2, continuous
D27V3, binary
                               cls
clus                             0  1
  DEL PEAK 14(9P21.3) MUTATED   15 14
  DEL PEAK 14(9P21.3) WILD-TYPE 13 15
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(9P21.3) MUTATED     15   14
  DEL PEAK 14(9P21.3) WILD-TYPE   13   15
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  FEMALE                          15                            13
  MALE                            14                            15

Clustering(28) Variable = DEL PEAK 15(9Q34.3) MUTATION ANALYSIS
D28V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 15(9Q34.3) MUTATED    8  6
  DEL PEAK 15(9Q34.3) WILD-TYPE 31 12
  DEL PEAK 15(9Q34.3) MUTATED DEL PEAK 15(9Q34.3) WILD-TYPE 
                           14                            43 
  DEL PEAK 15(9Q34.3) MUTATED DEL PEAK 15(9Q34.3) WILD-TYPE 
                            6                            12 
$`DEL PEAK 15(9Q34.3) MUTATED`
TCGA-DX-A1KU TCGA-DX-A3M1 TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-IE-A4EH 
       14.04        20.02         0.07        26.89         4.54        21.37 
TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K7 TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-JV-A5VE 
       25.22        31.76       143.41        13.58         5.88         6.25 
TCGA-JV-A5VF TCGA-MO-A47R 
        1.05         0.10 

$`DEL PEAK 15(9Q34.3) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 
        2.04        27.19        12.85        24.49        18.51        46.68 
TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U 
       42.44        31.56        29.85        74.66         5.23        76.37 
TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 
       66.87         6.28        27.78        60.30         8.55         9.70 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW 
       53.26        43.04         9.01        23.08        70.49       108.10 
TCGA-DX-A3LY TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS 
       17.10        15.02        17.75        42.77         4.50         0.46 
TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EI TCGA-IE-A4EJ 
        0.10         0.07         4.14        12.62         8.94         3.22 
TCGA-IE-A4EK TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-KF-A41W 
        1.38        28.21       116.88        73.28        22.62        11.70 
TCGA-PC-A5DK 
       75.48 

  DEL PEAK 15(9Q34.3) MUTATED DEL PEAK 15(9Q34.3) WILD-TYPE 
                         0.07                          0.07 
  DEL PEAK 15(9Q34.3) MUTATED DEL PEAK 15(9Q34.3) WILD-TYPE 
                       143.41                        116.88 
  DEL PEAK 15(9Q34.3) MUTATED DEL PEAK 15(9Q34.3) WILD-TYPE 
                        13.81                         22.62 
[1] "0.1 - 143.4 (13.8)" "0.1 - 116.9 (22.6)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 15(9Q34.3) WILD-TYPE"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 15(9Q34.3) WILD-TYPE"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"DEL PEAK 15(9Q34.3) WILD-TYPE"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-PC-A5DK 
"DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 15(9Q34.3) WILD-TYPE"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 15(9Q34.3) WILD-TYPE"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"DEL PEAK 15(9Q34.3) WILD-TYPE"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-PC-A5DK 
"DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 15(9Q34.3) WILD-TYPE"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 15(9Q34.3) WILD-TYPE" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 15(9Q34.3) WILD-TYPE"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK 15(9Q34.3) MUTATED" "DEL PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK 15(9Q34.3) MUTATED"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"DEL PEAK 15(9Q34.3) WILD-TYPE"   "DEL PEAK 15(9Q34.3) MUTATED" 
                   TCGA-PC-A5DK 
"DEL PEAK 15(9Q34.3) WILD-TYPE" 
[1] "hr=" "2"  
D28V2, continuous
D28V3, binary
                               cls
clus                             0  1
  DEL PEAK 15(9Q34.3) MUTATED   10  4
  DEL PEAK 15(9Q34.3) WILD-TYPE 18 25
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(9Q34.3) MUTATED     10    4
  DEL PEAK 15(9Q34.3) WILD-TYPE   18   25
        clus
vv       DEL PEAK 15(9Q34.3) MUTATED DEL PEAK 15(9Q34.3) WILD-TYPE
  FEMALE                          10                            18
  MALE                             4                            25

Clustering(29) Variable = DEL PEAK 16(10P15.3) MUTATION ANALYSIS
D29V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 16(10P15.3) MUTATED   20  6
  DEL PEAK 16(10P15.3) WILD-TYPE 19 12
  DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE 
                            26                             31 
  DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE 
                             6                             12 
$`DEL PEAK 16(10P15.3) MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-DX-A1L2 TCGA-DX-A23R TCGA-DX-A23Y 
        2.04        27.19        18.51        42.44        74.66         6.28 
TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3U5 TCGA-FX-A2QS TCGA-FX-A3RE TCGA-HB-A2OT 
      108.10        17.10        15.02         0.46         0.07        26.89 
TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IF-A4AJ 
        4.54         4.14        12.62         8.94         3.22        25.22 
TCGA-IF-A4AK TCGA-IS-A3K7 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-KF-A41W 
       31.76       143.41         5.88        22.62         6.25        11.70 
TCGA-MO-A47R TCGA-PC-A5DK 
        0.10        75.48 

$`DEL PEAK 16(10P15.3) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A1L4 
       14.04        12.85        24.49        46.68        31.56        29.85 
TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ 
        5.23        76.37        66.87        27.78        60.30         8.55 
TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU 
        9.70        53.26        43.04         9.01        23.08        70.49 
TCGA-DX-A3M1 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A3NJ TCGA-FX-A48G 
       20.02        17.75        42.77         4.50         0.10         0.07 
TCGA-IE-A4EH TCGA-IE-A4EK TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 
       21.37         1.38        28.21       116.88        13.58        73.28 
TCGA-JV-A5VF 
        1.05 

  DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE 
                          0.07                           0.07 
  DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE 
                        143.41                         116.88 
  DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE 
                         13.82                          23.08 
[1] "0.1 - 143.4 (13.8)" "0.1 - 116.9 (23.1)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-PC-A5DK 
  "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-PC-A5DK 
  "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 16(10P15.3) WILD-TYPE"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 16(10P15.3) WILD-TYPE" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 16(10P15.3) MUTATED" "DEL PEAK 16(10P15.3) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "DEL PEAK 16(10P15.3) MUTATED"   "DEL PEAK 16(10P15.3) MUTATED" 
                    TCGA-PC-A5DK 
  "DEL PEAK 16(10P15.3) MUTATED" 
[1] "hr=" "1.3"
D29V2, continuous
D29V3, binary
                                cls
clus                              0  1
  DEL PEAK 16(10P15.3) MUTATED   16 10
  DEL PEAK 16(10P15.3) WILD-TYPE 12 19
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(10P15.3) MUTATED     16   10
  DEL PEAK 16(10P15.3) WILD-TYPE   12   19
        clus
vv       DEL PEAK 16(10P15.3) MUTATED DEL PEAK 16(10P15.3) WILD-TYPE
  FEMALE                           16                             12
  MALE                             10                             19

Clustering(30) Variable = DEL PEAK 17(10Q23.31) MUTATION ANALYSIS
D30V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 17(10Q23.31) MUTATED   18  8
  DEL PEAK 17(10Q23.31) WILD-TYPE 21 10
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                             26                              31 
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                              8                              10 
$`DEL PEAK 17(10Q23.31) MUTATED`
TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A23Y TCGA-DX-A3U7 TCGA-FX-A3NJ 
       27.19        24.49        18.51         6.28        42.77         0.10 
TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 
        0.07         0.07        26.89         4.54         4.14        12.62 
TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK 
       21.37         8.94         3.22         1.38        25.22        31.76 
TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3KA TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF 
       28.21       143.41        13.58        22.62         6.25         1.05 
TCGA-KF-A41W TCGA-MO-A47R 
       11.70         0.10 

$`DEL PEAK 17(10Q23.31) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 
       14.04         2.04        12.85        46.68        42.44        31.56 
TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z 
       29.85        74.66         5.23        76.37        66.87        27.78 
TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS 
       60.30         8.55         9.70        53.26        43.04         9.01 
TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 
       23.08        70.49       108.10        17.10        20.02        15.02 
TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-IS-A3K8 TCGA-IW-A3M4 TCGA-IW-A3M5 
       17.75         4.50         0.46       116.88        73.28         5.88 
TCGA-PC-A5DK 
       75.48 

  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                           0.07                            0.46 
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                         143.41                          116.88 
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                          12.16                           27.78 
[1] "0.1 - 143.4 (12.2)" "0.5 - 116.9 (27.8)"
                     TCGA-DX-A1KU                      TCGA-DX-A1KW 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A1KX                      TCGA-DX-A1KY 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A1KZ                      TCGA-DX-A1L0 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-DX-A1L1                      TCGA-DX-A1L2 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A1L3                      TCGA-DX-A1L4 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A23R                      TCGA-DX-A23T 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A23U                      TCGA-DX-A23V 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A23Y                      TCGA-DX-A23Z 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A240                      TCGA-DX-A2IZ 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A2J0                      TCGA-DX-A2J1 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A2J4                      TCGA-DX-A3LS 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A3LT                      TCGA-DX-A3LU 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A3LW                      TCGA-DX-A3LY 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A3M1                      TCGA-DX-A3U5 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A3U6                      TCGA-DX-A3U7 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-DX-A3U8                      TCGA-FX-A2QS 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-FX-A3NJ                      TCGA-FX-A3RE 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-FX-A48G                      TCGA-HB-A2OT 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-HB-A3YV                      TCGA-HB-A43Z 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-HB-A5W3                      TCGA-IE-A4EH 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-IE-A4EI                      TCGA-IE-A4EJ 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-IE-A4EK                      TCGA-IF-A4AJ 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-IF-A4AK                      TCGA-IS-A3K6 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-IS-A3K7                      TCGA-IS-A3K8 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-IS-A3KA                      TCGA-IW-A3M4 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-IW-A3M5                      TCGA-IW-A3M6 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-JV-A5VE                      TCGA-JV-A5VF 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-KF-A41W                      TCGA-MO-A47R 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-PC-A5DK 
"DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A1KU                      TCGA-DX-A1KW 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A1KX                      TCGA-DX-A1KY 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A1KZ                      TCGA-DX-A1L0 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-DX-A1L1                      TCGA-DX-A1L2 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A1L3                      TCGA-DX-A1L4 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A23R                      TCGA-DX-A23T 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A23U                      TCGA-DX-A23V 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A23Y                      TCGA-DX-A23Z 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A240                      TCGA-DX-A2IZ 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A2J0                      TCGA-DX-A2J1 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A2J4                      TCGA-DX-A3LS 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A3LT                      TCGA-DX-A3LU 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A3LW                      TCGA-DX-A3LY 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A3M1                      TCGA-DX-A3U5 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A3U6                      TCGA-DX-A3U7 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-DX-A3U8                      TCGA-FX-A2QS 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-FX-A3NJ                      TCGA-FX-A3RE 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-FX-A48G                      TCGA-HB-A2OT 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-HB-A3YV                      TCGA-HB-A43Z 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-HB-A5W3                      TCGA-IE-A4EH 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-IE-A4EI                      TCGA-IE-A4EJ 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-IE-A4EK                      TCGA-IF-A4AJ 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-IF-A4AK                      TCGA-IS-A3K6 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-IS-A3K7                      TCGA-IS-A3K8 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-IS-A3KA                      TCGA-IW-A3M4 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-IW-A3M5                      TCGA-IW-A3M6 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-JV-A5VE                      TCGA-JV-A5VF 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-KF-A41W                      TCGA-MO-A47R 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-PC-A5DK 
"DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A1KU                      TCGA-DX-A1KW 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A1KX                      TCGA-DX-A1KY 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A1KZ                      TCGA-DX-A1L0 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-DX-A1L1                      TCGA-DX-A1L2 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A1L3                      TCGA-DX-A1L4 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A23R                      TCGA-DX-A23T 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A23U                      TCGA-DX-A23V 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A23Y                      TCGA-DX-A23Z 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A240                      TCGA-DX-A2IZ 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A2J0                      TCGA-DX-A2J1 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A2J4                      TCGA-DX-A3LS 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A3LT                      TCGA-DX-A3LU 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A3LW                      TCGA-DX-A3LY 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A3M1                      TCGA-DX-A3U5 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A3U6                      TCGA-DX-A3U7 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-DX-A3U8                      TCGA-FX-A2QS 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-FX-A3NJ                      TCGA-FX-A3RE 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-FX-A48G                      TCGA-HB-A2OT 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-HB-A3YV                      TCGA-HB-A43Z 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-HB-A5W3                      TCGA-IE-A4EH 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-IE-A4EI                      TCGA-IE-A4EJ 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-IE-A4EK                      TCGA-IF-A4AJ 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-IF-A4AK                      TCGA-IS-A3K6 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-IS-A3K7                      TCGA-IS-A3K8 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-IS-A3KA                      TCGA-IW-A3M4 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-IW-A3M5                      TCGA-IW-A3M6 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-JV-A5VE                      TCGA-JV-A5VF 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-KF-A41W                      TCGA-MO-A47R 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-PC-A5DK 
"DEL PEAK 17(10Q23.31) WILD-TYPE" 
[1] "hr=" "1.7"
D30V2, continuous
D30V3, binary
                                 cls
clus                               0  1
  DEL PEAK 17(10Q23.31) MUTATED   18  8
  DEL PEAK 17(10Q23.31) WILD-TYPE 10 21
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 17(10Q23.31) MUTATED     18    8
  DEL PEAK 17(10Q23.31) WILD-TYPE   10   21
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  FEMALE                            18                              10
  MALE                               8                              21

Clustering(31) Variable = DEL PEAK 18(11P15.5) MUTATION ANALYSIS
D31V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 18(11P15.5) MUTATED   17  9
  DEL PEAK 18(11P15.5) WILD-TYPE 22  9
  DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE 
                            26                             31 
  DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE 
                             9                              9 
$`DEL PEAK 18(11P15.5) MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L2 TCGA-DX-A23Y 
       14.04         2.04        27.19        24.49        42.44         6.28 
TCGA-DX-A2J0 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 
        9.70         9.01        23.08       108.10        17.10        20.02 
TCGA-DX-A3U5 TCGA-DX-A3U7 TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV 
       15.02        42.77         0.07         0.07        26.89         4.54 
TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EI TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IW-A3M5 
        4.14        12.62         8.94        25.22        31.76         5.88 
TCGA-IW-A3M6 TCGA-JV-A5VF 
       22.62         1.05 

$`DEL PEAK 18(11P15.5) WILD-TYPE`
TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R 
       12.85        18.51        46.68        31.56        29.85        74.66 
TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ 
        5.23        76.37        66.87        27.78        60.30         8.55 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LU TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A2QS 
       53.26        43.04        70.49        17.75         4.50         0.46 
TCGA-FX-A3NJ TCGA-IE-A4EH TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IS-A3K6 TCGA-IS-A3K7 
        0.10        21.37         3.22         1.38        28.21       143.41 
TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-JV-A5VE TCGA-KF-A41W TCGA-MO-A47R 
      116.88        13.58        73.28         6.25        11.70         0.10 
TCGA-PC-A5DK 
       75.48 

  DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE 
                          0.07                           0.10 
  DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE 
                        108.10                         143.41 
  DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE 
                         14.53                          27.78 
[1] "0.1 - 108.1 (14.5)" "0.1 - 143.4 (27.8)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 18(11P15.5) MUTATED"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 18(11P15.5) WILD-TYPE"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 18(11P15.5) WILD-TYPE"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 18(11P15.5) MUTATED"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 18(11P15.5) MUTATED"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 18(11P15.5) WILD-TYPE"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 18(11P15.5) WILD-TYPE"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 18(11P15.5) MUTATED"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 18(11P15.5) MUTATED"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 18(11P15.5) WILD-TYPE"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 18(11P15.5) MUTATED"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 18(11P15.5) WILD-TYPE"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-PC-A5DK 
"DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 18(11P15.5) MUTATED"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 18(11P15.5) WILD-TYPE"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 18(11P15.5) WILD-TYPE"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 18(11P15.5) MUTATED"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 18(11P15.5) MUTATED"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 18(11P15.5) WILD-TYPE"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 18(11P15.5) WILD-TYPE"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 18(11P15.5) MUTATED"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 18(11P15.5) MUTATED"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 18(11P15.5) WILD-TYPE"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 18(11P15.5) MUTATED"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 18(11P15.5) WILD-TYPE"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-PC-A5DK 
"DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 18(11P15.5) MUTATED"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 18(11P15.5) WILD-TYPE"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 18(11P15.5) WILD-TYPE"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 18(11P15.5) MUTATED"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 18(11P15.5) MUTATED"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 18(11P15.5) WILD-TYPE"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 18(11P15.5) WILD-TYPE"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 18(11P15.5) MUTATED"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 18(11P15.5) MUTATED"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 18(11P15.5) WILD-TYPE"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 18(11P15.5) MUTATED"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 18(11P15.5) WILD-TYPE"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-PC-A5DK 
"DEL PEAK 18(11P15.5) WILD-TYPE" 
[1] "hr=" "1.7"
D31V2, continuous
D31V3, binary
                                cls
clus                              0  1
  DEL PEAK 18(11P15.5) MUTATED   12 14
  DEL PEAK 18(11P15.5) WILD-TYPE 16 15
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(11P15.5) MUTATED     12   14
  DEL PEAK 18(11P15.5) WILD-TYPE   16   15
        clus
vv       DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE
  FEMALE                           12                             16
  MALE                             14                             15

Clustering(32) Variable = DEL PEAK 19(11Q22.3) MUTATION ANALYSIS
D32V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 19(11Q22.3) MUTATED   14  8
  DEL PEAK 19(11Q22.3) WILD-TYPE 25 10
  DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE 
                            22                             35 
  DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE 
                             8                             10 
$`DEL PEAK 19(11Q22.3) MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A23R 
       14.04         2.04        27.19        24.49        18.51        74.66 
TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A3LT TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-FX-A2QS 
        9.70        53.26        23.08        20.02        15.02         0.46 
TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IE-A4EJ TCGA-IF-A4AK TCGA-IS-A3KA 
       26.89         4.54        12.62         3.22        31.76        13.58 
TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VF TCGA-MO-A47R 
        5.88        22.62         1.05         0.10 

$`DEL PEAK 19(11Q22.3) WILD-TYPE`
TCGA-DX-A1KY TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T 
       12.85        46.68        42.44        31.56        29.85         5.23 
TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ 
       76.37        66.87         6.28        27.78        60.30         8.55 
TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3U6 
       43.04         9.01        70.49       108.10        17.10        17.75 
TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A43Z 
       42.77         4.50         0.10         0.07         0.07         4.14 
TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IS-A3K6 TCGA-IS-A3K7 
       21.37         8.94         1.38        25.22        28.21       143.41 
TCGA-IS-A3K8 TCGA-IW-A3M4 TCGA-JV-A5VE TCGA-KF-A41W TCGA-PC-A5DK 
      116.88        73.28         6.25        11.70        75.48 

  DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE 
                          0.10                           0.07 
  DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE 
                         74.66                         143.41 
  DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE 
                         14.53                          25.22 
[1] "0.1 - 74.7 (14.5)"  "0.1 - 143.4 (25.2)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-PC-A5DK 
"DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-PC-A5DK 
"DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-PC-A5DK 
"DEL PEAK 19(11Q22.3) WILD-TYPE" 
[1] "hr=" "1.9"
D32V2, continuous
D32V3, binary
                                cls
clus                              0  1
  DEL PEAK 19(11Q22.3) MUTATED   12 10
  DEL PEAK 19(11Q22.3) WILD-TYPE 16 19
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(11Q22.3) MUTATED     12   10
  DEL PEAK 19(11Q22.3) WILD-TYPE   16   19
        clus
vv       DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  FEMALE                           12                             16
  MALE                             10                             19

Clustering(33) Variable = DEL PEAK 20(11Q24.3) MUTATION ANALYSIS
D33V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 20(11Q24.3) MUTATED   16 10
  DEL PEAK 20(11Q24.3) WILD-TYPE 23  8
  DEL PEAK 20(11Q24.3) MUTATED DEL PEAK 20(11Q24.3) WILD-TYPE 
                            26                             31 
  DEL PEAK 20(11Q24.3) MUTATED DEL PEAK 20(11Q24.3) WILD-TYPE 
                            10                              8 
$`DEL PEAK 20(11Q24.3) MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L2 
        2.04        27.19        12.85        24.49        18.51        42.44 
TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23Y TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A3LY 
       74.66         5.23         6.28         9.70        53.26        17.10 
TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U7 TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A5W3 
       20.02        15.02        42.77        26.89         4.54        12.62 
TCGA-IE-A4EJ TCGA-IF-A4AK TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VF 
        3.22        31.76        13.58         5.88        22.62         1.05 
TCGA-KF-A41W TCGA-MO-A47R 
       11.70         0.10 

$`DEL PEAK 20(11Q24.3) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23U TCGA-DX-A23V 
       14.04        46.68        31.56        29.85        76.37        66.87 
TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT 
       27.78        60.30         8.55        43.04         9.01        23.08 
TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ 
       70.49       108.10        17.75         4.50         0.46         0.10 
TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A43Z TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EK 
        0.07         0.07         4.14        21.37         8.94         1.38 
TCGA-IF-A4AJ TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IW-A3M4 TCGA-JV-A5VE 
       25.22        28.21       143.41       116.88        73.28         6.25 
TCGA-PC-A5DK 
       75.48 

  DEL PEAK 20(11Q24.3) MUTATED DEL PEAK 20(11Q24.3) WILD-TYPE 
                          0.10                           0.07 
  DEL PEAK 20(11Q24.3) MUTATED DEL PEAK 20(11Q24.3) WILD-TYPE 
                         74.66                         143.41 
  DEL PEAK 20(11Q24.3) MUTATED DEL PEAK 20(11Q24.3) WILD-TYPE 
                         14.30                          25.22 
[1] "0.1 - 74.7 (14.3)"  "0.1 - 143.4 (25.2)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-PC-A5DK 
"DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-PC-A5DK 
"DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-PC-A5DK 
"DEL PEAK 20(11Q24.3) WILD-TYPE" 
[1] "hr=" "2.3"
D33V2, continuous
D33V3, binary
                                cls
clus                              0  1
  DEL PEAK 20(11Q24.3) MUTATED   13 13
  DEL PEAK 20(11Q24.3) WILD-TYPE 15 16
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(11Q24.3) MUTATED     13   13
  DEL PEAK 20(11Q24.3) WILD-TYPE   15   16
        clus
vv       DEL PEAK 20(11Q24.3) MUTATED DEL PEAK 20(11Q24.3) WILD-TYPE
  FEMALE                           13                             15
  MALE                             13                             16

Clustering(34) Variable = DEL PEAK 21(12P13.1) MUTATION ANALYSIS
D34V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 21(12P13.1) MUTATED   11  5
  DEL PEAK 21(12P13.1) WILD-TYPE 28 13
  DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE 
                            16                             41 
  DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE 
                             5                             13 
$`DEL PEAK 21(12P13.1) MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A23R TCGA-DX-A23Y 
        2.04        27.19        18.51        46.68        74.66         6.28 
TCGA-DX-A2J0 TCGA-DX-A3LT TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3U5 TCGA-DX-A3U7 
        9.70        23.08       108.10        17.10        15.02        42.77 
TCGA-FX-A3NJ TCGA-IS-A3K6 TCGA-JV-A5VF TCGA-KF-A41W 
        0.10        28.21         1.05        11.70 

$`DEL PEAK 21(12P13.1) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 
       14.04        12.85        24.49        42.44        31.56        29.85 
TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ 
        5.23        76.37        66.87        27.78        60.30         8.55 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU TCGA-DX-A3M1 TCGA-DX-A3U6 
       53.26        43.04         9.01        70.49        20.02        17.75 
TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV 
        4.50         0.46         0.07         0.07        26.89         4.54 
TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK 
        4.14        12.62        21.37         8.94         3.22         1.38 
TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 
       25.22        31.76       143.41       116.88        13.58        73.28 
TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-MO-A47R TCGA-PC-A5DK 
        5.88        22.62         6.25         0.10        75.48 

  DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE 
                          0.10                           0.07 
  DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE 
                        108.10                         143.41 
  DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE 
                        17.805                         20.020 
[1] "0.1 - 108.1 (17.8)" "0.1 - 143.4 (20.0)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 21(12P13.1) MUTATED"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-PC-A5DK 
"DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 21(12P13.1) MUTATED"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-PC-A5DK 
"DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 21(12P13.1) MUTATED"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-PC-A5DK 
"DEL PEAK 21(12P13.1) WILD-TYPE" 
[1] "hr=" "1"  
D34V2, continuous
D34V3, binary
                                cls
clus                              0  1
  DEL PEAK 21(12P13.1) MUTATED    5 11
  DEL PEAK 21(12P13.1) WILD-TYPE 23 18
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(12P13.1) MUTATED      5   11
  DEL PEAK 21(12P13.1) WILD-TYPE   23   18
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  FEMALE                            5                             23
  MALE                             11                             18

Clustering(35) Variable = DEL PEAK 22(13Q14.2) MUTATION ANALYSIS
D35V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 22(13Q14.2) MUTATED   26 12
  DEL PEAK 22(13Q14.2) WILD-TYPE 13  6
  DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE 
                            38                             19 
  DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE 
                            12                              6 
$`DEL PEAK 22(13Q14.2) MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 
       14.04        27.19        12.85        24.49        18.51        46.68 
TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A2J0 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LY 
       74.66         6.28         9.70         9.01        23.08        17.10 
TCGA-DX-A3M1 TCGA-DX-A3U7 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G 
       20.02        42.77         0.46         0.10         0.07         0.07 
TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI 
       26.89         4.54         4.14        12.62        21.37         8.94 
TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 
        3.22         1.38        25.22        31.76        28.21       143.41 
TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W 
       13.58        73.28        22.62         6.25         1.05        11.70 
TCGA-MO-A47R TCGA-PC-A5DK 
        0.10        75.48 

$`DEL PEAK 22(13Q14.2) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U 
        2.04        42.44        31.56        29.85         5.23        76.37 
TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J1 TCGA-DX-A2J4 
       66.87        27.78        60.30         8.55        53.26        43.04 
TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-IS-A3K8 
       70.49       108.10        15.02        17.75         4.50       116.88 
TCGA-IW-A3M5 
        5.88 

  DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE 
                          0.07                           2.04 
  DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE 
                        143.41                         116.88 
  DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE 
                         13.81                          31.56 
[1] "0.1 - 143.4 (13.8)" "2.0 - 116.9 (31.6)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-PC-A5DK 
  "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-PC-A5DK 
  "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 22(13Q14.2) WILD-TYPE" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 22(13Q14.2) MUTATED" "DEL PEAK 22(13Q14.2) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 22(13Q14.2) WILD-TYPE"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "DEL PEAK 22(13Q14.2) MUTATED"   "DEL PEAK 22(13Q14.2) MUTATED" 
                    TCGA-PC-A5DK 
  "DEL PEAK 22(13Q14.2) MUTATED" 
[1] "hr=" "1.6"
D35V2, continuous
D35V3, binary
                                cls
clus                              0  1
  DEL PEAK 22(13Q14.2) MUTATED   22 16
  DEL PEAK 22(13Q14.2) WILD-TYPE  6 13
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(13Q14.2) MUTATED     22   16
  DEL PEAK 22(13Q14.2) WILD-TYPE    6   13
        clus
vv       DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE
  FEMALE                           22                              6
  MALE                             16                             13

Clustering(36) Variable = DEL PEAK 23(14Q24.1) MUTATION ANALYSIS
D36V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 23(14Q24.1) MUTATED   22  5
  DEL PEAK 23(14Q24.1) WILD-TYPE 17 13
  DEL PEAK 23(14Q24.1) MUTATED DEL PEAK 23(14Q24.1) WILD-TYPE 
                            27                             30 
  DEL PEAK 23(14Q24.1) MUTATED DEL PEAK 23(14Q24.1) WILD-TYPE 
                             5                             13 
$`DEL PEAK 23(14Q24.1) MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 
       14.04         2.04        27.19        12.85        24.49        18.51 
TCGA-DX-A1L2 TCGA-DX-A23R TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LY TCGA-DX-A3U5 
       42.44        74.66        23.08        70.49        17.10        15.02 
TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A43Z TCGA-IE-A4EH 
        0.46         0.10         0.07         0.07         4.14        21.37 
TCGA-IE-A4EJ TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IW-A3M4 TCGA-IW-A3M6 
        3.22        28.21       143.41       116.88        73.28        22.62 
TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W 
        6.25         1.05        11.70 

$`DEL PEAK 23(14Q24.1) WILD-TYPE`
TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V 
       46.68        31.56        29.85         5.23        76.37        66.87 
TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 
        6.28        27.78        60.30         8.55         9.70        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LW TCGA-DX-A3M1 TCGA-DX-A3U6 TCGA-DX-A3U7 
       43.04         9.01       108.10        20.02        17.75        42.77 
TCGA-DX-A3U8 TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IE-A4EI TCGA-IE-A4EK 
        4.50        26.89         4.54        12.62         8.94         1.38 
TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-MO-A47R TCGA-PC-A5DK 
       25.22        31.76        13.58         5.88         0.10        75.48 

  DEL PEAK 23(14Q24.1) MUTATED DEL PEAK 23(14Q24.1) WILD-TYPE 
                          0.07                           0.10 
  DEL PEAK 23(14Q24.1) MUTATED DEL PEAK 23(14Q24.1) WILD-TYPE 
                        143.41                         108.10 
  DEL PEAK 23(14Q24.1) MUTATED DEL PEAK 23(14Q24.1) WILD-TYPE 
                         17.10                          22.62 
[1] "0.1 - 143.4 (17.1)" "0.1 - 108.1 (22.6)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 23(14Q24.1) MUTATED"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 23(14Q24.1) MUTATED"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 23(14Q24.1) MUTATED"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 23(14Q24.1) WILD-TYPE"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 23(14Q24.1) WILD-TYPE" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 23(14Q24.1) MUTATED" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 23(14Q24.1) WILD-TYPE" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK 23(14Q24.1) WILD-TYPE" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 23(14Q24.1) WILD-TYPE" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 23(14Q24.1) WILD-TYPE" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 23(14Q24.1) WILD-TYPE" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 23(14Q24.1) MUTATED"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 23(14Q24.1) WILD-TYPE"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 23(14Q24.1) WILD-TYPE"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 23(14Q24.1) WILD-TYPE" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 23(14Q24.1) WILD-TYPE"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 23(14Q24.1) MUTATED"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 23(14Q24.1) MUTATED" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 23(14Q24.1) WILD-TYPE"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK 23(14Q24.1) WILD-TYPE"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 23(14Q24.1) WILD-TYPE"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 23(14Q24.1) WILD-TYPE" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK 23(14Q24.1) WILD-TYPE"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 23(14Q24.1) MUTATED"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 23(14Q24.1) WILD-TYPE"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 23(14Q24.1) WILD-TYPE"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 23(14Q24.1) MUTATED"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "DEL PEAK 23(14Q24.1) MUTATED" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-PC-A5DK 
"DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 23(14Q24.1) MUTATED"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 23(14Q24.1) MUTATED"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 23(14Q24.1) MUTATED"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 23(14Q24.1) WILD-TYPE"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 23(14Q24.1) WILD-TYPE" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 23(14Q24.1) MUTATED" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 23(14Q24.1) WILD-TYPE" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK 23(14Q24.1) WILD-TYPE" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 23(14Q24.1) WILD-TYPE" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 23(14Q24.1) WILD-TYPE" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 23(14Q24.1) WILD-TYPE" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 23(14Q24.1) MUTATED"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 23(14Q24.1) WILD-TYPE"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 23(14Q24.1) WILD-TYPE"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 23(14Q24.1) WILD-TYPE" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 23(14Q24.1) WILD-TYPE"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 23(14Q24.1) MUTATED"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 23(14Q24.1) MUTATED" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 23(14Q24.1) WILD-TYPE"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK 23(14Q24.1) WILD-TYPE"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 23(14Q24.1) WILD-TYPE"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 23(14Q24.1) WILD-TYPE" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK 23(14Q24.1) WILD-TYPE"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 23(14Q24.1) MUTATED"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 23(14Q24.1) WILD-TYPE"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 23(14Q24.1) WILD-TYPE"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 23(14Q24.1) MUTATED"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "DEL PEAK 23(14Q24.1) MUTATED" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-PC-A5DK 
"DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 23(14Q24.1) MUTATED"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 23(14Q24.1) MUTATED"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 23(14Q24.1) MUTATED"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 23(14Q24.1) WILD-TYPE"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 23(14Q24.1) WILD-TYPE" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 23(14Q24.1) MUTATED" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 23(14Q24.1) WILD-TYPE" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK 23(14Q24.1) WILD-TYPE" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 23(14Q24.1) WILD-TYPE" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 23(14Q24.1) WILD-TYPE" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 23(14Q24.1) WILD-TYPE" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 23(14Q24.1) MUTATED"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 23(14Q24.1) WILD-TYPE"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 23(14Q24.1) WILD-TYPE"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 23(14Q24.1) WILD-TYPE" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 23(14Q24.1) WILD-TYPE"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 23(14Q24.1) MUTATED"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 23(14Q24.1) MUTATED" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 23(14Q24.1) WILD-TYPE"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK 23(14Q24.1) WILD-TYPE"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 23(14Q24.1) WILD-TYPE"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 23(14Q24.1) WILD-TYPE" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK 23(14Q24.1) WILD-TYPE"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 23(14Q24.1) MUTATED"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 23(14Q24.1) WILD-TYPE"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 23(14Q24.1) WILD-TYPE"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 23(14Q24.1) MUTATED"   "DEL PEAK 23(14Q24.1) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "DEL PEAK 23(14Q24.1) MUTATED" "DEL PEAK 23(14Q24.1) WILD-TYPE" 
                    TCGA-PC-A5DK 
"DEL PEAK 23(14Q24.1) WILD-TYPE" 
[1] "hr=" "2.1"
D36V2, continuous
D36V3, binary
                                cls
clus                              0  1
  DEL PEAK 23(14Q24.1) MUTATED   16 11
  DEL PEAK 23(14Q24.1) WILD-TYPE 12 18
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(14Q24.1) MUTATED     16   11
  DEL PEAK 23(14Q24.1) WILD-TYPE   12   18
        clus
vv       DEL PEAK 23(14Q24.1) MUTATED DEL PEAK 23(14Q24.1) WILD-TYPE
  FEMALE                           16                             12
  MALE                             11                             18

Clustering(37) Variable = DEL PEAK 24(16Q12.1) MUTATION ANALYSIS
D37V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 24(16Q12.1) MUTATED   21 10
  DEL PEAK 24(16Q12.1) WILD-TYPE 18  8
  DEL PEAK 24(16Q12.1) MUTATED DEL PEAK 24(16Q12.1) WILD-TYPE 
                            31                             26 
  DEL PEAK 24(16Q12.1) MUTATED DEL PEAK 24(16Q12.1) WILD-TYPE 
                            10                              8 
$`DEL PEAK 24(16Q12.1) MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A2J0 
       14.04        27.19        18.51        74.66         6.28         9.70 
TCGA-DX-A3LT TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U7 TCGA-FX-A3NJ 
       23.08        17.10        20.02        15.02        42.77         0.10 
TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 
        0.07         0.07        26.89         4.54         4.14        12.62 
TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK 
       21.37         8.94         3.22         1.38        25.22        31.76 
TCGA-IS-A3K6 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W 
       28.21        13.58        73.28         6.25         1.05        11.70 
TCGA-MO-A47R 
        0.10 

$`DEL PEAK 24(16Q12.1) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 
        2.04        12.85        24.49        46.68        42.44        31.56 
TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 
       29.85         5.23        76.37        66.87        27.78        60.30 
TCGA-DX-A2IZ TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU TCGA-DX-A3LW 
        8.55        53.26        43.04         9.01        70.49       108.10 
TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IW-A3M5 
       17.75         4.50         0.46       143.41       116.88         5.88 
TCGA-IW-A3M6 TCGA-PC-A5DK 
       22.62        75.48 

  DEL PEAK 24(16Q12.1) MUTATED DEL PEAK 24(16Q12.1) WILD-TYPE 
                          0.07                           0.46 
  DEL PEAK 24(16Q12.1) MUTATED DEL PEAK 24(16Q12.1) WILD-TYPE 
                         74.66                         143.41 
  DEL PEAK 24(16Q12.1) MUTATED DEL PEAK 24(16Q12.1) WILD-TYPE 
                        13.580                         30.705 
[1] "0.1 - 74.7 (13.6)"  "0.5 - 143.4 (30.7)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 24(16Q12.1) MUTATED" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 24(16Q12.1) MUTATED" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 24(16Q12.1) WILD-TYPE"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 24(16Q12.1) WILD-TYPE" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 24(16Q12.1) WILD-TYPE" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 24(16Q12.1) MUTATED" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 24(16Q12.1) WILD-TYPE" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 24(16Q12.1) MUTATED" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 24(16Q12.1) WILD-TYPE" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 24(16Q12.1) MUTATED" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 24(16Q12.1) WILD-TYPE" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 24(16Q12.1) MUTATED" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 24(16Q12.1) WILD-TYPE"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 24(16Q12.1) WILD-TYPE"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 24(16Q12.1) WILD-TYPE" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 24(16Q12.1) WILD-TYPE" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 24(16Q12.1) WILD-TYPE" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-PC-A5DK 
"DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 24(16Q12.1) MUTATED" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 24(16Q12.1) MUTATED" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 24(16Q12.1) WILD-TYPE"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 24(16Q12.1) WILD-TYPE" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 24(16Q12.1) WILD-TYPE" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 24(16Q12.1) MUTATED" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 24(16Q12.1) WILD-TYPE" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 24(16Q12.1) MUTATED" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 24(16Q12.1) WILD-TYPE" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 24(16Q12.1) MUTATED" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 24(16Q12.1) WILD-TYPE" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 24(16Q12.1) MUTATED" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 24(16Q12.1) WILD-TYPE"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 24(16Q12.1) WILD-TYPE"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 24(16Q12.1) WILD-TYPE" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 24(16Q12.1) WILD-TYPE" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 24(16Q12.1) WILD-TYPE" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-PC-A5DK 
"DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 24(16Q12.1) MUTATED" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 24(16Q12.1) MUTATED" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 24(16Q12.1) WILD-TYPE"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 24(16Q12.1) WILD-TYPE" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 24(16Q12.1) WILD-TYPE" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 24(16Q12.1) MUTATED" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 24(16Q12.1) WILD-TYPE" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 24(16Q12.1) MUTATED" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 24(16Q12.1) WILD-TYPE" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 24(16Q12.1) MUTATED" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 24(16Q12.1) WILD-TYPE" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 24(16Q12.1) MUTATED" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 24(16Q12.1) WILD-TYPE"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 24(16Q12.1) WILD-TYPE"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 24(16Q12.1) WILD-TYPE" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 24(16Q12.1) WILD-TYPE" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 24(16Q12.1) WILD-TYPE" "DEL PEAK 24(16Q12.1) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "DEL PEAK 24(16Q12.1) MUTATED"   "DEL PEAK 24(16Q12.1) MUTATED" 
                    TCGA-PC-A5DK 
"DEL PEAK 24(16Q12.1) WILD-TYPE" 
[1] "hr=" "1.9"
D37V2, continuous
D37V3, binary
                                cls
clus                              0  1
  DEL PEAK 24(16Q12.1) MUTATED   18 13
  DEL PEAK 24(16Q12.1) WILD-TYPE 10 16
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(16Q12.1) MUTATED     18   13
  DEL PEAK 24(16Q12.1) WILD-TYPE   10   16
        clus
vv       DEL PEAK 24(16Q12.1) MUTATED DEL PEAK 24(16Q12.1) WILD-TYPE
  FEMALE                           18                             10
  MALE                             13                             16

Clustering(38) Variable = DEL PEAK 25(17P13.1) MUTATION ANALYSIS
D38V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 25(17P13.1) MUTATED   12  3
  DEL PEAK 25(17P13.1) WILD-TYPE 27 15
  DEL PEAK 25(17P13.1) MUTATED DEL PEAK 25(17P13.1) WILD-TYPE 
                            15                             42 
  DEL PEAK 25(17P13.1) MUTATED DEL PEAK 25(17P13.1) WILD-TYPE 
                             3                             15 
$`DEL PEAK 25(17P13.1) MUTATED`
TCGA-DX-A1KZ TCGA-DX-A23R TCGA-DX-A3LT TCGA-FX-A3NJ TCGA-HB-A2OT TCGA-HB-A5W3 
       24.49        74.66        23.08         0.10        26.89        12.62 
TCGA-IE-A4EH TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 
       21.37         3.22         1.38        31.76        28.21       143.41 
TCGA-IW-A3M5 TCGA-JV-A5VE TCGA-KF-A41W 
        5.88         6.25        11.70 

$`DEL PEAK 25(17P13.1) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L1 
       14.04         2.04        27.19        12.85        18.51        46.68 
TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V 
       42.44        31.56        29.85         5.23        76.37        66.87 
TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 
        6.28        27.78        60.30         8.55         9.70        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 
       43.04         9.01        70.49       108.10        17.10        20.02 
TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3RE 
       15.02        17.75        42.77         4.50         0.46         0.07 
TCGA-FX-A48G TCGA-HB-A3YV TCGA-HB-A43Z TCGA-IE-A4EI TCGA-IF-A4AJ TCGA-IS-A3K8 
        0.07         4.54         4.14         8.94        25.22       116.88 
TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-JV-A5VF TCGA-MO-A47R TCGA-PC-A5DK 
       13.58        73.28        22.62         1.05         0.10        75.48 

  DEL PEAK 25(17P13.1) MUTATED DEL PEAK 25(17P13.1) WILD-TYPE 
                          0.10                           0.07 
  DEL PEAK 25(17P13.1) MUTATED DEL PEAK 25(17P13.1) WILD-TYPE 
                        143.41                         116.88 
  DEL PEAK 25(17P13.1) MUTATED DEL PEAK 25(17P13.1) WILD-TYPE 
                         21.37                          18.13 
[1] "0.1 - 143.4 (21.4)" "0.1 - 116.9 (18.1)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 25(17P13.1) MUTATED"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 25(17P13.1) MUTATED"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-PC-A5DK 
"DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 25(17P13.1) MUTATED"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 25(17P13.1) MUTATED"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-PC-A5DK 
"DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 25(17P13.1) MUTATED"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 25(17P13.1) MUTATED"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-PC-A5DK 
"DEL PEAK 25(17P13.1) WILD-TYPE" 
[1] "hr=" "1.6"
D38V2, continuous
D38V3, binary
                                cls
clus                              0  1
  DEL PEAK 25(17P13.1) MUTATED   11  4
  DEL PEAK 25(17P13.1) WILD-TYPE 17 25
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(17P13.1) MUTATED     11    4
  DEL PEAK 25(17P13.1) WILD-TYPE   17   25
        clus
vv       DEL PEAK 25(17P13.1) MUTATED DEL PEAK 25(17P13.1) WILD-TYPE
  FEMALE                           11                             17
  MALE                              4                             25

Clustering(39) Variable = DEL PEAK 26(17Q25.3) MUTATION ANALYSIS
D39V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 26(17Q25.3) MUTATED   11  5
  DEL PEAK 26(17Q25.3) WILD-TYPE 28 13
  DEL PEAK 26(17Q25.3) MUTATED DEL PEAK 26(17Q25.3) WILD-TYPE 
                            16                             41 
  DEL PEAK 26(17Q25.3) MUTATED DEL PEAK 26(17Q25.3) WILD-TYPE 
                             5                             13 
$`DEL PEAK 26(17Q25.3) MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A3LT 
        2.04        27.19        18.51        74.66         6.28        23.08 
TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-FX-A3NJ TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EJ 
       17.10        20.02         0.10        12.62        21.37         3.22 
TCGA-IF-A4AJ TCGA-IS-A3KA TCGA-JV-A5VE TCGA-KF-A41W 
       25.22        13.58         6.25        11.70 

$`DEL PEAK 26(17Q25.3) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 
       14.04        12.85        24.49        46.68        42.44        31.56 
TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 
       29.85         5.23        76.37        66.87        27.78        60.30 
TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU 
        8.55         9.70        53.26        43.04         9.01        70.49 
TCGA-DX-A3LW TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS 
      108.10        15.02        17.75        42.77         4.50         0.46 
TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z TCGA-IE-A4EI 
        0.07         0.07        26.89         4.54         4.14         8.94 
TCGA-IE-A4EK TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IW-A3M4 
        1.38        31.76        28.21       143.41       116.88        73.28 
TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VF TCGA-MO-A47R TCGA-PC-A5DK 
        5.88        22.62         1.05         0.10        75.48 

  DEL PEAK 26(17Q25.3) MUTATED DEL PEAK 26(17Q25.3) WILD-TYPE 
                          0.10                           0.07 
  DEL PEAK 26(17Q25.3) MUTATED DEL PEAK 26(17Q25.3) WILD-TYPE 
                         74.66                         143.41 
  DEL PEAK 26(17Q25.3) MUTATED DEL PEAK 26(17Q25.3) WILD-TYPE 
                         15.34                          24.49 
[1] "0.1 - 74.7 (15.3)"  "0.1 - 143.4 (24.5)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 26(17Q25.3) WILD-TYPE"   "DEL PEAK 26(17Q25.3) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 26(17Q25.3) MUTATED" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 26(17Q25.3) WILD-TYPE"   "DEL PEAK 26(17Q25.3) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 26(17Q25.3) MUTATED" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 26(17Q25.3) MUTATED" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 26(17Q25.3) MUTATED" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 26(17Q25.3) WILD-TYPE"   "DEL PEAK 26(17Q25.3) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 26(17Q25.3) MUTATED" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 26(17Q25.3) MUTATED" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 26(17Q25.3) MUTATED"   "DEL PEAK 26(17Q25.3) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 26(17Q25.3) WILD-TYPE"   "DEL PEAK 26(17Q25.3) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 26(17Q25.3) WILD-TYPE"   "DEL PEAK 26(17Q25.3) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 26(17Q25.3) MUTATED" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 26(17Q25.3) MUTATED" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "DEL PEAK 26(17Q25.3) MUTATED" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-PC-A5DK 
"DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 26(17Q25.3) WILD-TYPE"   "DEL PEAK 26(17Q25.3) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 26(17Q25.3) MUTATED" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 26(17Q25.3) WILD-TYPE"   "DEL PEAK 26(17Q25.3) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 26(17Q25.3) MUTATED" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 26(17Q25.3) MUTATED" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 26(17Q25.3) MUTATED" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 26(17Q25.3) WILD-TYPE"   "DEL PEAK 26(17Q25.3) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 26(17Q25.3) MUTATED" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 26(17Q25.3) MUTATED" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 26(17Q25.3) MUTATED"   "DEL PEAK 26(17Q25.3) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 26(17Q25.3) WILD-TYPE"   "DEL PEAK 26(17Q25.3) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 26(17Q25.3) WILD-TYPE"   "DEL PEAK 26(17Q25.3) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 26(17Q25.3) MUTATED" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 26(17Q25.3) MUTATED" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "DEL PEAK 26(17Q25.3) MUTATED" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-PC-A5DK 
"DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 26(17Q25.3) WILD-TYPE"   "DEL PEAK 26(17Q25.3) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 26(17Q25.3) MUTATED" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 26(17Q25.3) WILD-TYPE"   "DEL PEAK 26(17Q25.3) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 26(17Q25.3) MUTATED" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 26(17Q25.3) MUTATED" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 26(17Q25.3) MUTATED" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 26(17Q25.3) WILD-TYPE"   "DEL PEAK 26(17Q25.3) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 26(17Q25.3) MUTATED" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 26(17Q25.3) MUTATED" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 26(17Q25.3) MUTATED"   "DEL PEAK 26(17Q25.3) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 26(17Q25.3) WILD-TYPE"   "DEL PEAK 26(17Q25.3) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 26(17Q25.3) WILD-TYPE"   "DEL PEAK 26(17Q25.3) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 26(17Q25.3) MUTATED" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 26(17Q25.3) WILD-TYPE" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 26(17Q25.3) MUTATED" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "DEL PEAK 26(17Q25.3) MUTATED" "DEL PEAK 26(17Q25.3) WILD-TYPE" 
                    TCGA-PC-A5DK 
"DEL PEAK 26(17Q25.3) WILD-TYPE" 
[1] "hr=" "1.4"
D39V2, continuous
D39V3, binary
                                cls
clus                              0  1
  DEL PEAK 26(17Q25.3) MUTATED    8  8
  DEL PEAK 26(17Q25.3) WILD-TYPE 20 21
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(17Q25.3) MUTATED      8    8
  DEL PEAK 26(17Q25.3) WILD-TYPE   20   21
        clus
vv       DEL PEAK 26(17Q25.3) MUTATED DEL PEAK 26(17Q25.3) WILD-TYPE
  FEMALE                            8                             20
  MALE                              8                             21

Clustering(40) Variable = DEL PEAK 27(18P11.32) MUTATION ANALYSIS
D40V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 27(18P11.32) MUTATED   13  6
  DEL PEAK 27(18P11.32) WILD-TYPE 26 12
  DEL PEAK 27(18P11.32) MUTATED DEL PEAK 27(18P11.32) WILD-TYPE 
                             19                              38 
  DEL PEAK 27(18P11.32) MUTATED DEL PEAK 27(18P11.32) WILD-TYPE 
                              6                              12 
$`DEL PEAK 27(18P11.32) MUTATED`
TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A2J0 TCGA-DX-A3LT TCGA-DX-A3M1 
       27.19        12.85        18.51         9.70        23.08        20.02 
TCGA-DX-A3U5 TCGA-DX-A3U7 TCGA-HB-A2OT TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH 
       15.02        42.77        26.89         4.14        12.62        21.37 
TCGA-IE-A4EI TCGA-IF-A4AK TCGA-IS-A3K7 TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-JV-A5VF 
        8.94        31.76       143.41        73.28         5.88         1.05 
TCGA-KF-A41W 
       11.70 

$`DEL PEAK 27(18P11.32) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 
       14.04         2.04        24.49        46.68        42.44        31.56 
TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y 
       29.85        74.66         5.23        76.37        66.87         6.28 
TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS 
       27.78        60.30         8.55        53.26        43.04         9.01 
TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A2QS 
       70.49       108.10        17.10        17.75         4.50         0.46 
TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A3YV TCGA-IE-A4EJ TCGA-IE-A4EK 
        0.10         0.07         0.07         4.54         3.22         1.38 
TCGA-IF-A4AJ TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M6 TCGA-JV-A5VE 
       25.22        28.21       116.88        13.58        22.62         6.25 
TCGA-MO-A47R TCGA-PC-A5DK 
        0.10        75.48 

  DEL PEAK 27(18P11.32) MUTATED DEL PEAK 27(18P11.32) WILD-TYPE 
                           1.05                            0.07 
  DEL PEAK 27(18P11.32) MUTATED DEL PEAK 27(18P11.32) WILD-TYPE 
                         143.41                          116.88 
  DEL PEAK 27(18P11.32) MUTATED DEL PEAK 27(18P11.32) WILD-TYPE 
                         18.510                          20.185 
[1] "1.1 - 143.4 (18.5)" "0.1 - 116.9 (20.2)"
                     TCGA-DX-A1KU                      TCGA-DX-A1KW 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A1KX                      TCGA-DX-A1KY 
  "DEL PEAK 27(18P11.32) MUTATED"   "DEL PEAK 27(18P11.32) MUTATED" 
                     TCGA-DX-A1KZ                      TCGA-DX-A1L0 
"DEL PEAK 27(18P11.32) WILD-TYPE"   "DEL PEAK 27(18P11.32) MUTATED" 
                     TCGA-DX-A1L1                      TCGA-DX-A1L2 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A1L3                      TCGA-DX-A1L4 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A23R                      TCGA-DX-A23T 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A23U                      TCGA-DX-A23V 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A23Y                      TCGA-DX-A23Z 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A240                      TCGA-DX-A2IZ 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A2J0                      TCGA-DX-A2J1 
  "DEL PEAK 27(18P11.32) MUTATED" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A2J4                      TCGA-DX-A3LS 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A3LT                      TCGA-DX-A3LU 
  "DEL PEAK 27(18P11.32) MUTATED" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A3LW                      TCGA-DX-A3LY 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A3M1                      TCGA-DX-A3U5 
  "DEL PEAK 27(18P11.32) MUTATED"   "DEL PEAK 27(18P11.32) MUTATED" 
                     TCGA-DX-A3U6                      TCGA-DX-A3U7 
"DEL PEAK 27(18P11.32) WILD-TYPE"   "DEL PEAK 27(18P11.32) MUTATED" 
                     TCGA-DX-A3U8                      TCGA-FX-A2QS 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-FX-A3NJ                      TCGA-FX-A3RE 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-FX-A48G                      TCGA-HB-A2OT 
"DEL PEAK 27(18P11.32) WILD-TYPE"   "DEL PEAK 27(18P11.32) MUTATED" 
                     TCGA-HB-A3YV                      TCGA-HB-A43Z 
"DEL PEAK 27(18P11.32) WILD-TYPE"   "DEL PEAK 27(18P11.32) MUTATED" 
                     TCGA-HB-A5W3                      TCGA-IE-A4EH 
  "DEL PEAK 27(18P11.32) MUTATED"   "DEL PEAK 27(18P11.32) MUTATED" 
                     TCGA-IE-A4EI                      TCGA-IE-A4EJ 
  "DEL PEAK 27(18P11.32) MUTATED" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-IE-A4EK                      TCGA-IF-A4AJ 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-IF-A4AK                      TCGA-IS-A3K6 
  "DEL PEAK 27(18P11.32) MUTATED" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-IS-A3K7                      TCGA-IS-A3K8 
  "DEL PEAK 27(18P11.32) MUTATED" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-IS-A3KA                      TCGA-IW-A3M4 
"DEL PEAK 27(18P11.32) WILD-TYPE"   "DEL PEAK 27(18P11.32) MUTATED" 
                     TCGA-IW-A3M5                      TCGA-IW-A3M6 
  "DEL PEAK 27(18P11.32) MUTATED" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-JV-A5VE                      TCGA-JV-A5VF 
"DEL PEAK 27(18P11.32) WILD-TYPE"   "DEL PEAK 27(18P11.32) MUTATED" 
                     TCGA-KF-A41W                      TCGA-MO-A47R 
  "DEL PEAK 27(18P11.32) MUTATED" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-PC-A5DK 
"DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A1KU                      TCGA-DX-A1KW 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A1KX                      TCGA-DX-A1KY 
  "DEL PEAK 27(18P11.32) MUTATED"   "DEL PEAK 27(18P11.32) MUTATED" 
                     TCGA-DX-A1KZ                      TCGA-DX-A1L0 
"DEL PEAK 27(18P11.32) WILD-TYPE"   "DEL PEAK 27(18P11.32) MUTATED" 
                     TCGA-DX-A1L1                      TCGA-DX-A1L2 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A1L3                      TCGA-DX-A1L4 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A23R                      TCGA-DX-A23T 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A23U                      TCGA-DX-A23V 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A23Y                      TCGA-DX-A23Z 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A240                      TCGA-DX-A2IZ 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A2J0                      TCGA-DX-A2J1 
  "DEL PEAK 27(18P11.32) MUTATED" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A2J4                      TCGA-DX-A3LS 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A3LT                      TCGA-DX-A3LU 
  "DEL PEAK 27(18P11.32) MUTATED" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A3LW                      TCGA-DX-A3LY 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A3M1                      TCGA-DX-A3U5 
  "DEL PEAK 27(18P11.32) MUTATED"   "DEL PEAK 27(18P11.32) MUTATED" 
                     TCGA-DX-A3U6                      TCGA-DX-A3U7 
"DEL PEAK 27(18P11.32) WILD-TYPE"   "DEL PEAK 27(18P11.32) MUTATED" 
                     TCGA-DX-A3U8                      TCGA-FX-A2QS 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-FX-A3NJ                      TCGA-FX-A3RE 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-FX-A48G                      TCGA-HB-A2OT 
"DEL PEAK 27(18P11.32) WILD-TYPE"   "DEL PEAK 27(18P11.32) MUTATED" 
                     TCGA-HB-A3YV                      TCGA-HB-A43Z 
"DEL PEAK 27(18P11.32) WILD-TYPE"   "DEL PEAK 27(18P11.32) MUTATED" 
                     TCGA-HB-A5W3                      TCGA-IE-A4EH 
  "DEL PEAK 27(18P11.32) MUTATED"   "DEL PEAK 27(18P11.32) MUTATED" 
                     TCGA-IE-A4EI                      TCGA-IE-A4EJ 
  "DEL PEAK 27(18P11.32) MUTATED" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-IE-A4EK                      TCGA-IF-A4AJ 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-IF-A4AK                      TCGA-IS-A3K6 
  "DEL PEAK 27(18P11.32) MUTATED" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-IS-A3K7                      TCGA-IS-A3K8 
  "DEL PEAK 27(18P11.32) MUTATED" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-IS-A3KA                      TCGA-IW-A3M4 
"DEL PEAK 27(18P11.32) WILD-TYPE"   "DEL PEAK 27(18P11.32) MUTATED" 
                     TCGA-IW-A3M5                      TCGA-IW-A3M6 
  "DEL PEAK 27(18P11.32) MUTATED" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-JV-A5VE                      TCGA-JV-A5VF 
"DEL PEAK 27(18P11.32) WILD-TYPE"   "DEL PEAK 27(18P11.32) MUTATED" 
                     TCGA-KF-A41W                      TCGA-MO-A47R 
  "DEL PEAK 27(18P11.32) MUTATED" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-PC-A5DK 
"DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A1KU                      TCGA-DX-A1KW 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A1KX                      TCGA-DX-A1KY 
  "DEL PEAK 27(18P11.32) MUTATED"   "DEL PEAK 27(18P11.32) MUTATED" 
                     TCGA-DX-A1KZ                      TCGA-DX-A1L0 
"DEL PEAK 27(18P11.32) WILD-TYPE"   "DEL PEAK 27(18P11.32) MUTATED" 
                     TCGA-DX-A1L1                      TCGA-DX-A1L2 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A1L3                      TCGA-DX-A1L4 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A23R                      TCGA-DX-A23T 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A23U                      TCGA-DX-A23V 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A23Y                      TCGA-DX-A23Z 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A240                      TCGA-DX-A2IZ 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A2J0                      TCGA-DX-A2J1 
  "DEL PEAK 27(18P11.32) MUTATED" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A2J4                      TCGA-DX-A3LS 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A3LT                      TCGA-DX-A3LU 
  "DEL PEAK 27(18P11.32) MUTATED" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A3LW                      TCGA-DX-A3LY 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-DX-A3M1                      TCGA-DX-A3U5 
  "DEL PEAK 27(18P11.32) MUTATED"   "DEL PEAK 27(18P11.32) MUTATED" 
                     TCGA-DX-A3U6                      TCGA-DX-A3U7 
"DEL PEAK 27(18P11.32) WILD-TYPE"   "DEL PEAK 27(18P11.32) MUTATED" 
                     TCGA-DX-A3U8                      TCGA-FX-A2QS 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-FX-A3NJ                      TCGA-FX-A3RE 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-FX-A48G                      TCGA-HB-A2OT 
"DEL PEAK 27(18P11.32) WILD-TYPE"   "DEL PEAK 27(18P11.32) MUTATED" 
                     TCGA-HB-A3YV                      TCGA-HB-A43Z 
"DEL PEAK 27(18P11.32) WILD-TYPE"   "DEL PEAK 27(18P11.32) MUTATED" 
                     TCGA-HB-A5W3                      TCGA-IE-A4EH 
  "DEL PEAK 27(18P11.32) MUTATED"   "DEL PEAK 27(18P11.32) MUTATED" 
                     TCGA-IE-A4EI                      TCGA-IE-A4EJ 
  "DEL PEAK 27(18P11.32) MUTATED" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-IE-A4EK                      TCGA-IF-A4AJ 
"DEL PEAK 27(18P11.32) WILD-TYPE" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-IF-A4AK                      TCGA-IS-A3K6 
  "DEL PEAK 27(18P11.32) MUTATED" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-IS-A3K7                      TCGA-IS-A3K8 
  "DEL PEAK 27(18P11.32) MUTATED" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-IS-A3KA                      TCGA-IW-A3M4 
"DEL PEAK 27(18P11.32) WILD-TYPE"   "DEL PEAK 27(18P11.32) MUTATED" 
                     TCGA-IW-A3M5                      TCGA-IW-A3M6 
  "DEL PEAK 27(18P11.32) MUTATED" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-JV-A5VE                      TCGA-JV-A5VF 
"DEL PEAK 27(18P11.32) WILD-TYPE"   "DEL PEAK 27(18P11.32) MUTATED" 
                     TCGA-KF-A41W                      TCGA-MO-A47R 
  "DEL PEAK 27(18P11.32) MUTATED" "DEL PEAK 27(18P11.32) WILD-TYPE" 
                     TCGA-PC-A5DK 
"DEL PEAK 27(18P11.32) WILD-TYPE" 
[1] "hr=" "1"  
D40V2, continuous
D40V3, binary
                                 cls
clus                               0  1
  DEL PEAK 27(18P11.32) MUTATED   12  7
  DEL PEAK 27(18P11.32) WILD-TYPE 16 22
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 27(18P11.32) MUTATED     12    7
  DEL PEAK 27(18P11.32) WILD-TYPE   16   22
        clus
vv       DEL PEAK 27(18P11.32) MUTATED DEL PEAK 27(18P11.32) WILD-TYPE
  FEMALE                            12                              16
  MALE                               7                              22

Clustering(41) Variable = DEL PEAK 28(18Q23) MUTATION ANALYSIS
D41V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 28(18Q23) MUTATED   15  6
  DEL PEAK 28(18Q23) WILD-TYPE 24 12
  DEL PEAK 28(18Q23) MUTATED DEL PEAK 28(18Q23) WILD-TYPE 
                          21                           36 
  DEL PEAK 28(18Q23) MUTATED DEL PEAK 28(18Q23) WILD-TYPE 
                           6                           12 
$`DEL PEAK 28(18Q23) MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A23Y 
        2.04        27.19        12.85        46.68        31.56         6.28 
TCGA-DX-A2J0 TCGA-DX-A3LT TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U7 TCGA-FX-A48G 
        9.70        23.08        20.02        15.02        42.77         0.07 
TCGA-HB-A2OT TCGA-HB-A5W3 TCGA-IE-A4EJ TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K7 
       26.89        12.62         3.22        25.22        31.76       143.41 
TCGA-IW-A3M6 TCGA-JV-A5VF TCGA-KF-A41W 
       22.62         1.05        11.70 

$`DEL PEAK 28(18Q23) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L2 TCGA-DX-A1L4 TCGA-DX-A23R 
       14.04        24.49        18.51        42.44        29.85        74.66 
TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ 
        5.23        76.37        66.87        27.78        60.30         8.55 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY 
       53.26        43.04         9.01        70.49       108.10        17.10 
TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-HB-A3YV 
       17.75         4.50         0.46         0.10         0.07         4.54 
TCGA-HB-A43Z TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IS-A3K6 TCGA-IS-A3K8 
        4.14        21.37         8.94         1.38        28.21       116.88 
TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-JV-A5VE TCGA-MO-A47R TCGA-PC-A5DK 
       13.58        73.28         5.88         6.25         0.10        75.48 

  DEL PEAK 28(18Q23) MUTATED DEL PEAK 28(18Q23) WILD-TYPE 
                        0.07                         0.07 
  DEL PEAK 28(18Q23) MUTATED DEL PEAK 28(18Q23) WILD-TYPE 
                      143.41                       116.88 
  DEL PEAK 28(18Q23) MUTATED DEL PEAK 28(18Q23) WILD-TYPE 
                       20.02                        18.13 
[1] "0.1 - 143.4 (20.0)" "0.1 - 116.9 (18.1)"
                  TCGA-DX-A1KU                   TCGA-DX-A1KW 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-DX-A1KX                   TCGA-DX-A1KY 
  "DEL PEAK 28(18Q23) MUTATED"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-DX-A1KZ                   TCGA-DX-A1L0 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A1L1                   TCGA-DX-A1L2 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A1L3                   TCGA-DX-A1L4 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A23R                   TCGA-DX-A23T 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A23U                   TCGA-DX-A23V 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A23Y                   TCGA-DX-A23Z 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A240                   TCGA-DX-A2IZ 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A2J0                   TCGA-DX-A2J1 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A2J4                   TCGA-DX-A3LS 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A3LT                   TCGA-DX-A3LU 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A3LW                   TCGA-DX-A3LY 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A3M1                   TCGA-DX-A3U5 
  "DEL PEAK 28(18Q23) MUTATED"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-DX-A3U6                   TCGA-DX-A3U7 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-DX-A3U8                   TCGA-FX-A2QS 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-FX-A3NJ                   TCGA-FX-A3RE 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-FX-A48G                   TCGA-HB-A2OT 
  "DEL PEAK 28(18Q23) MUTATED"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-HB-A3YV                   TCGA-HB-A43Z 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-HB-A5W3                   TCGA-IE-A4EH 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-IE-A4EI                   TCGA-IE-A4EJ 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-IE-A4EK                   TCGA-IF-A4AJ 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-IF-A4AK                   TCGA-IS-A3K6 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-IS-A3K7                   TCGA-IS-A3K8 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-IS-A3KA                   TCGA-IW-A3M4 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-IW-A3M6 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-JV-A5VE                   TCGA-JV-A5VF 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-KF-A41W                   TCGA-MO-A47R 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-PC-A5DK 
"DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A1KU                   TCGA-DX-A1KW 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-DX-A1KX                   TCGA-DX-A1KY 
  "DEL PEAK 28(18Q23) MUTATED"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-DX-A1KZ                   TCGA-DX-A1L0 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A1L1                   TCGA-DX-A1L2 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A1L3                   TCGA-DX-A1L4 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A23R                   TCGA-DX-A23T 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A23U                   TCGA-DX-A23V 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A23Y                   TCGA-DX-A23Z 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A240                   TCGA-DX-A2IZ 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A2J0                   TCGA-DX-A2J1 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A2J4                   TCGA-DX-A3LS 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A3LT                   TCGA-DX-A3LU 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A3LW                   TCGA-DX-A3LY 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A3M1                   TCGA-DX-A3U5 
  "DEL PEAK 28(18Q23) MUTATED"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-DX-A3U6                   TCGA-DX-A3U7 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-DX-A3U8                   TCGA-FX-A2QS 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-FX-A3NJ                   TCGA-FX-A3RE 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-FX-A48G                   TCGA-HB-A2OT 
  "DEL PEAK 28(18Q23) MUTATED"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-HB-A3YV                   TCGA-HB-A43Z 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-HB-A5W3                   TCGA-IE-A4EH 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-IE-A4EI                   TCGA-IE-A4EJ 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-IE-A4EK                   TCGA-IF-A4AJ 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-IF-A4AK                   TCGA-IS-A3K6 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-IS-A3K7                   TCGA-IS-A3K8 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-IS-A3KA                   TCGA-IW-A3M4 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-IW-A3M6 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-JV-A5VE                   TCGA-JV-A5VF 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-KF-A41W                   TCGA-MO-A47R 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-PC-A5DK 
"DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A1KU                   TCGA-DX-A1KW 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-DX-A1KX                   TCGA-DX-A1KY 
  "DEL PEAK 28(18Q23) MUTATED"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-DX-A1KZ                   TCGA-DX-A1L0 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A1L1                   TCGA-DX-A1L2 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A1L3                   TCGA-DX-A1L4 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A23R                   TCGA-DX-A23T 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A23U                   TCGA-DX-A23V 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A23Y                   TCGA-DX-A23Z 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A240                   TCGA-DX-A2IZ 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A2J0                   TCGA-DX-A2J1 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A2J4                   TCGA-DX-A3LS 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A3LT                   TCGA-DX-A3LU 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A3LW                   TCGA-DX-A3LY 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-DX-A3M1                   TCGA-DX-A3U5 
  "DEL PEAK 28(18Q23) MUTATED"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-DX-A3U6                   TCGA-DX-A3U7 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-DX-A3U8                   TCGA-FX-A2QS 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-FX-A3NJ                   TCGA-FX-A3RE 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-FX-A48G                   TCGA-HB-A2OT 
  "DEL PEAK 28(18Q23) MUTATED"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-HB-A3YV                   TCGA-HB-A43Z 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-HB-A5W3                   TCGA-IE-A4EH 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-IE-A4EI                   TCGA-IE-A4EJ 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-IE-A4EK                   TCGA-IF-A4AJ 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-IF-A4AK                   TCGA-IS-A3K6 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-IS-A3K7                   TCGA-IS-A3K8 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-IS-A3KA                   TCGA-IW-A3M4 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-IW-A3M6 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-JV-A5VE                   TCGA-JV-A5VF 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-KF-A41W                   TCGA-MO-A47R 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-PC-A5DK 
"DEL PEAK 28(18Q23) WILD-TYPE" 
[1] "hr=" "1.1"
D41V2, continuous
D41V3, binary
                              cls
clus                            0  1
  DEL PEAK 28(18Q23) MUTATED   11 10
  DEL PEAK 28(18Q23) WILD-TYPE 17 19
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 28(18Q23) MUTATED     11   10
  DEL PEAK 28(18Q23) WILD-TYPE   17   19
        clus
vv       DEL PEAK 28(18Q23) MUTATED DEL PEAK 28(18Q23) WILD-TYPE
  FEMALE                         11                           17
  MALE                           10                           19

Clustering(42) Variable = DEL PEAK 29(19P13.3) MUTATION ANALYSIS
D42V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 29(19P13.3) MUTATED   10  5
  DEL PEAK 29(19P13.3) WILD-TYPE 29 13
  DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE 
                            15                             42 
  DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE 
                             5                             13 
$`DEL PEAK 29(19P13.3) MUTATED`
TCGA-DX-A3LW TCGA-DX-A3U7 TCGA-FX-A48G TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH 
      108.10        42.77         0.07         4.14        12.62        21.37 
TCGA-IE-A4EI TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K7 TCGA-IS-A3KA TCGA-IW-A3M5 
        8.94        25.22        31.76       143.41        13.58         5.88 
TCGA-IW-A3M6 TCGA-JV-A5VF TCGA-KF-A41W 
       22.62         1.05        11.70 

$`DEL PEAK 29(19P13.3) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 
       14.04         2.04        27.19        12.85        24.49        18.51 
TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T 
       46.68        42.44        31.56        29.85        74.66         5.23 
TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ 
       76.37        66.87         6.28        27.78        60.30         8.55 
TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU 
        9.70        53.26        43.04         9.01        23.08        70.49 
TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A2QS 
       17.10        20.02        15.02        17.75         4.50         0.46 
TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-HB-A2OT TCGA-HB-A3YV TCGA-IE-A4EJ TCGA-IE-A4EK 
        0.10         0.07        26.89         4.54         3.22         1.38 
TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IW-A3M4 TCGA-JV-A5VE TCGA-MO-A47R TCGA-PC-A5DK 
       28.21       116.88        73.28         6.25         0.10        75.48 

  DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE 
                          0.07                           0.07 
  DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE 
                        143.41                         116.88 
  DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE 
                        13.580                         19.265 
[1] "0.1 - 143.4 (13.6)" "0.1 - 116.9 (19.3)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 29(19P13.3) MUTATED" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 29(19P13.3) WILD-TYPE"   "DEL PEAK 29(19P13.3) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 29(19P13.3) MUTATED" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 29(19P13.3) WILD-TYPE"   "DEL PEAK 29(19P13.3) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 29(19P13.3) MUTATED"   "DEL PEAK 29(19P13.3) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "DEL PEAK 29(19P13.3) MUTATED" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 29(19P13.3) WILD-TYPE"   "DEL PEAK 29(19P13.3) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 29(19P13.3) MUTATED" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 29(19P13.3) MUTATED" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 29(19P13.3) MUTATED" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 29(19P13.3) MUTATED"   "DEL PEAK 29(19P13.3) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 29(19P13.3) WILD-TYPE"   "DEL PEAK 29(19P13.3) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "DEL PEAK 29(19P13.3) MUTATED" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-PC-A5DK 
"DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 29(19P13.3) MUTATED" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 29(19P13.3) WILD-TYPE"   "DEL PEAK 29(19P13.3) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 29(19P13.3) MUTATED" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 29(19P13.3) WILD-TYPE"   "DEL PEAK 29(19P13.3) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 29(19P13.3) MUTATED"   "DEL PEAK 29(19P13.3) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "DEL PEAK 29(19P13.3) MUTATED" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 29(19P13.3) WILD-TYPE"   "DEL PEAK 29(19P13.3) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 29(19P13.3) MUTATED" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 29(19P13.3) MUTATED" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 29(19P13.3) MUTATED" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 29(19P13.3) MUTATED"   "DEL PEAK 29(19P13.3) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 29(19P13.3) WILD-TYPE"   "DEL PEAK 29(19P13.3) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "DEL PEAK 29(19P13.3) MUTATED" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-PC-A5DK 
"DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 29(19P13.3) MUTATED" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 29(19P13.3) WILD-TYPE"   "DEL PEAK 29(19P13.3) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 29(19P13.3) WILD-TYPE" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 29(19P13.3) MUTATED" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 29(19P13.3) WILD-TYPE"   "DEL PEAK 29(19P13.3) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 29(19P13.3) MUTATED"   "DEL PEAK 29(19P13.3) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "DEL PEAK 29(19P13.3) MUTATED" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 29(19P13.3) WILD-TYPE"   "DEL PEAK 29(19P13.3) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 29(19P13.3) MUTATED" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 29(19P13.3) MUTATED" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 29(19P13.3) MUTATED" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 29(19P13.3) MUTATED"   "DEL PEAK 29(19P13.3) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 29(19P13.3) WILD-TYPE"   "DEL PEAK 29(19P13.3) MUTATED" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "DEL PEAK 29(19P13.3) MUTATED" "DEL PEAK 29(19P13.3) WILD-TYPE" 
                    TCGA-PC-A5DK 
"DEL PEAK 29(19P13.3) WILD-TYPE" 
[1] "hr=" "1.1"
D42V2, continuous
D42V3, binary
                                cls
clus                              0  1
  DEL PEAK 29(19P13.3) MUTATED   12  3
  DEL PEAK 29(19P13.3) WILD-TYPE 16 26
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(19P13.3) MUTATED     12    3
  DEL PEAK 29(19P13.3) WILD-TYPE   16   26
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  FEMALE                           12                             16
  MALE                              3                             26

Clustering(43) Variable = DEL PEAK 30(19Q13.33) MUTATION ANALYSIS
D43V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 30(19Q13.33) MUTATED   11  6
  DEL PEAK 30(19Q13.33) WILD-TYPE 28 12
  DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE 
                             17                              40 
  DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE 
                              6                              12 
$`DEL PEAK 30(19Q13.33) MUTATED`
TCGA-DX-A1KW TCGA-DX-A1L0 TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A2J0 TCGA-DX-A3LT 
        2.04        18.51        74.66         6.28         9.70        23.08 
TCGA-DX-A3U7 TCGA-FX-A2QS TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A3YV TCGA-HB-A5W3 
       42.77         0.46         0.07         0.07         4.54        12.62 
TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-KF-A41W TCGA-PC-A5DK 
       13.58        73.28        22.62        11.70        75.48 

$`DEL PEAK 30(19Q13.33) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L2 
       14.04        27.19        12.85        24.49        46.68        42.44 
TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z 
       31.56        29.85         5.23        76.37        66.87        27.78 
TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU 
       60.30         8.55        53.26        43.04         9.01        70.49 
TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U8 
      108.10        17.10        20.02        15.02        17.75         4.50 
TCGA-FX-A3NJ TCGA-HB-A2OT TCGA-HB-A43Z TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ 
        0.10        26.89         4.14        21.37         8.94         3.22 
TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 
        1.38        25.22        31.76        28.21       143.41       116.88 
TCGA-IW-A3M5 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-MO-A47R 
        5.88         6.25         1.05         0.10 

  DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE 
                           0.07                            0.10 
  DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE 
                          75.48                          143.41 
  DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE 
                          12.62                           22.93 
[1] "0.1 - 75.5 (12.6)"  "0.1 - 143.4 (22.9)"
                     TCGA-DX-A1KU                      TCGA-DX-A1KW 
"DEL PEAK 30(19Q13.33) WILD-TYPE"   "DEL PEAK 30(19Q13.33) MUTATED" 
                     TCGA-DX-A1KX                      TCGA-DX-A1KY 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A1KZ                      TCGA-DX-A1L0 
"DEL PEAK 30(19Q13.33) WILD-TYPE"   "DEL PEAK 30(19Q13.33) MUTATED" 
                     TCGA-DX-A1L1                      TCGA-DX-A1L2 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A1L3                      TCGA-DX-A1L4 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A23R                      TCGA-DX-A23T 
  "DEL PEAK 30(19Q13.33) MUTATED" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A23U                      TCGA-DX-A23V 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A23Y                      TCGA-DX-A23Z 
  "DEL PEAK 30(19Q13.33) MUTATED" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A240                      TCGA-DX-A2IZ 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A2J0                      TCGA-DX-A2J1 
  "DEL PEAK 30(19Q13.33) MUTATED" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A2J4                      TCGA-DX-A3LS 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A3LT                      TCGA-DX-A3LU 
  "DEL PEAK 30(19Q13.33) MUTATED" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A3LW                      TCGA-DX-A3LY 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A3M1                      TCGA-DX-A3U5 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A3U6                      TCGA-DX-A3U7 
"DEL PEAK 30(19Q13.33) WILD-TYPE"   "DEL PEAK 30(19Q13.33) MUTATED" 
                     TCGA-DX-A3U8                      TCGA-FX-A2QS 
"DEL PEAK 30(19Q13.33) WILD-TYPE"   "DEL PEAK 30(19Q13.33) MUTATED" 
                     TCGA-FX-A3NJ                      TCGA-FX-A3RE 
"DEL PEAK 30(19Q13.33) WILD-TYPE"   "DEL PEAK 30(19Q13.33) MUTATED" 
                     TCGA-FX-A48G                      TCGA-HB-A2OT 
  "DEL PEAK 30(19Q13.33) MUTATED" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-HB-A3YV                      TCGA-HB-A43Z 
  "DEL PEAK 30(19Q13.33) MUTATED" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-HB-A5W3                      TCGA-IE-A4EH 
  "DEL PEAK 30(19Q13.33) MUTATED" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-IE-A4EI                      TCGA-IE-A4EJ 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-IE-A4EK                      TCGA-IF-A4AJ 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-IF-A4AK                      TCGA-IS-A3K6 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-IS-A3K7                      TCGA-IS-A3K8 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-IS-A3KA                      TCGA-IW-A3M4 
  "DEL PEAK 30(19Q13.33) MUTATED"   "DEL PEAK 30(19Q13.33) MUTATED" 
                     TCGA-IW-A3M5                      TCGA-IW-A3M6 
"DEL PEAK 30(19Q13.33) WILD-TYPE"   "DEL PEAK 30(19Q13.33) MUTATED" 
                     TCGA-JV-A5VE                      TCGA-JV-A5VF 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-KF-A41W                      TCGA-MO-A47R 
  "DEL PEAK 30(19Q13.33) MUTATED" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-PC-A5DK 
  "DEL PEAK 30(19Q13.33) MUTATED" 
                     TCGA-DX-A1KU                      TCGA-DX-A1KW 
"DEL PEAK 30(19Q13.33) WILD-TYPE"   "DEL PEAK 30(19Q13.33) MUTATED" 
                     TCGA-DX-A1KX                      TCGA-DX-A1KY 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A1KZ                      TCGA-DX-A1L0 
"DEL PEAK 30(19Q13.33) WILD-TYPE"   "DEL PEAK 30(19Q13.33) MUTATED" 
                     TCGA-DX-A1L1                      TCGA-DX-A1L2 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A1L3                      TCGA-DX-A1L4 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A23R                      TCGA-DX-A23T 
  "DEL PEAK 30(19Q13.33) MUTATED" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A23U                      TCGA-DX-A23V 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A23Y                      TCGA-DX-A23Z 
  "DEL PEAK 30(19Q13.33) MUTATED" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A240                      TCGA-DX-A2IZ 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A2J0                      TCGA-DX-A2J1 
  "DEL PEAK 30(19Q13.33) MUTATED" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A2J4                      TCGA-DX-A3LS 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A3LT                      TCGA-DX-A3LU 
  "DEL PEAK 30(19Q13.33) MUTATED" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A3LW                      TCGA-DX-A3LY 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A3M1                      TCGA-DX-A3U5 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A3U6                      TCGA-DX-A3U7 
"DEL PEAK 30(19Q13.33) WILD-TYPE"   "DEL PEAK 30(19Q13.33) MUTATED" 
                     TCGA-DX-A3U8                      TCGA-FX-A2QS 
"DEL PEAK 30(19Q13.33) WILD-TYPE"   "DEL PEAK 30(19Q13.33) MUTATED" 
                     TCGA-FX-A3NJ                      TCGA-FX-A3RE 
"DEL PEAK 30(19Q13.33) WILD-TYPE"   "DEL PEAK 30(19Q13.33) MUTATED" 
                     TCGA-FX-A48G                      TCGA-HB-A2OT 
  "DEL PEAK 30(19Q13.33) MUTATED" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-HB-A3YV                      TCGA-HB-A43Z 
  "DEL PEAK 30(19Q13.33) MUTATED" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-HB-A5W3                      TCGA-IE-A4EH 
  "DEL PEAK 30(19Q13.33) MUTATED" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-IE-A4EI                      TCGA-IE-A4EJ 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-IE-A4EK                      TCGA-IF-A4AJ 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-IF-A4AK                      TCGA-IS-A3K6 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-IS-A3K7                      TCGA-IS-A3K8 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-IS-A3KA                      TCGA-IW-A3M4 
  "DEL PEAK 30(19Q13.33) MUTATED"   "DEL PEAK 30(19Q13.33) MUTATED" 
                     TCGA-IW-A3M5                      TCGA-IW-A3M6 
"DEL PEAK 30(19Q13.33) WILD-TYPE"   "DEL PEAK 30(19Q13.33) MUTATED" 
                     TCGA-JV-A5VE                      TCGA-JV-A5VF 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-KF-A41W                      TCGA-MO-A47R 
  "DEL PEAK 30(19Q13.33) MUTATED" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-PC-A5DK 
  "DEL PEAK 30(19Q13.33) MUTATED" 
                     TCGA-DX-A1KU                      TCGA-DX-A1KW 
"DEL PEAK 30(19Q13.33) WILD-TYPE"   "DEL PEAK 30(19Q13.33) MUTATED" 
                     TCGA-DX-A1KX                      TCGA-DX-A1KY 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A1KZ                      TCGA-DX-A1L0 
"DEL PEAK 30(19Q13.33) WILD-TYPE"   "DEL PEAK 30(19Q13.33) MUTATED" 
                     TCGA-DX-A1L1                      TCGA-DX-A1L2 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A1L3                      TCGA-DX-A1L4 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A23R                      TCGA-DX-A23T 
  "DEL PEAK 30(19Q13.33) MUTATED" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A23U                      TCGA-DX-A23V 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A23Y                      TCGA-DX-A23Z 
  "DEL PEAK 30(19Q13.33) MUTATED" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A240                      TCGA-DX-A2IZ 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A2J0                      TCGA-DX-A2J1 
  "DEL PEAK 30(19Q13.33) MUTATED" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A2J4                      TCGA-DX-A3LS 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A3LT                      TCGA-DX-A3LU 
  "DEL PEAK 30(19Q13.33) MUTATED" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A3LW                      TCGA-DX-A3LY 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A3M1                      TCGA-DX-A3U5 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A3U6                      TCGA-DX-A3U7 
"DEL PEAK 30(19Q13.33) WILD-TYPE"   "DEL PEAK 30(19Q13.33) MUTATED" 
                     TCGA-DX-A3U8                      TCGA-FX-A2QS 
"DEL PEAK 30(19Q13.33) WILD-TYPE"   "DEL PEAK 30(19Q13.33) MUTATED" 
                     TCGA-FX-A3NJ                      TCGA-FX-A3RE 
"DEL PEAK 30(19Q13.33) WILD-TYPE"   "DEL PEAK 30(19Q13.33) MUTATED" 
                     TCGA-FX-A48G                      TCGA-HB-A2OT 
  "DEL PEAK 30(19Q13.33) MUTATED" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-HB-A3YV                      TCGA-HB-A43Z 
  "DEL PEAK 30(19Q13.33) MUTATED" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-HB-A5W3                      TCGA-IE-A4EH 
  "DEL PEAK 30(19Q13.33) MUTATED" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-IE-A4EI                      TCGA-IE-A4EJ 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-IE-A4EK                      TCGA-IF-A4AJ 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-IF-A4AK                      TCGA-IS-A3K6 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-IS-A3K7                      TCGA-IS-A3K8 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-IS-A3KA                      TCGA-IW-A3M4 
  "DEL PEAK 30(19Q13.33) MUTATED"   "DEL PEAK 30(19Q13.33) MUTATED" 
                     TCGA-IW-A3M5                      TCGA-IW-A3M6 
"DEL PEAK 30(19Q13.33) WILD-TYPE"   "DEL PEAK 30(19Q13.33) MUTATED" 
                     TCGA-JV-A5VE                      TCGA-JV-A5VF 
"DEL PEAK 30(19Q13.33) WILD-TYPE" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-KF-A41W                      TCGA-MO-A47R 
  "DEL PEAK 30(19Q13.33) MUTATED" "DEL PEAK 30(19Q13.33) WILD-TYPE" 
                     TCGA-PC-A5DK 
  "DEL PEAK 30(19Q13.33) MUTATED" 
[1] "hr=" "1.6"
D43V2, continuous
D43V3, binary
                                 cls
clus                               0  1
  DEL PEAK 30(19Q13.33) MUTATED    9  8
  DEL PEAK 30(19Q13.33) WILD-TYPE 19 21
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 30(19Q13.33) MUTATED      9    8
  DEL PEAK 30(19Q13.33) WILD-TYPE   19   21
        clus
vv       DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE
  FEMALE                             9                              19
  MALE                               8                              21

Clustering(44) Variable = DEL PEAK 31(21Q22.3) MUTATION ANALYSIS
D44V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 31(21Q22.3) MUTATED   15  6
  DEL PEAK 31(21Q22.3) WILD-TYPE 24 12
  DEL PEAK 31(21Q22.3) MUTATED DEL PEAK 31(21Q22.3) WILD-TYPE 
                            21                             36 
  DEL PEAK 31(21Q22.3) MUTATED DEL PEAK 31(21Q22.3) WILD-TYPE 
                             6                             12 
$`DEL PEAK 31(21Q22.3) MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-DX-A1L2 TCGA-DX-A23R TCGA-DX-A23Y 
       14.04        27.19        18.51        42.44        74.66         6.28 
TCGA-DX-A2J0 TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-FX-A2QS 
        9.70       108.10        17.10        20.02        15.02         0.46 
TCGA-HB-A2OT TCGA-IE-A4EJ TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K7 TCGA-IW-A3M5 
       26.89         3.22        25.22        31.76       143.41         5.88 
TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-KF-A41W 
       22.62         6.25        11.70 

$`DEL PEAK 31(21Q22.3) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A1L4 
        2.04        12.85        24.49        46.68        31.56        29.85 
TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ 
        5.23        76.37        66.87        27.78        60.30         8.55 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3U6 
       53.26        43.04         9.01        23.08        70.49        17.75 
TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A3YV 
       42.77         4.50         0.10         0.07         0.07         4.54 
TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IS-A3K6 
        4.14        12.62        21.37         8.94         1.38        28.21 
TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-JV-A5VF TCGA-MO-A47R TCGA-PC-A5DK 
      116.88        13.58        73.28         1.05         0.10        75.48 

  DEL PEAK 31(21Q22.3) MUTATED DEL PEAK 31(21Q22.3) WILD-TYPE 
                          0.46                           0.07 
  DEL PEAK 31(21Q22.3) MUTATED DEL PEAK 31(21Q22.3) WILD-TYPE 
                        143.41                         116.88 
  DEL PEAK 31(21Q22.3) MUTATED DEL PEAK 31(21Q22.3) WILD-TYPE 
                         18.51                          19.56 
[1] "0.5 - 143.4 (18.5)" "0.1 - 116.9 (19.6)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 31(21Q22.3) MUTATED" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 31(21Q22.3) MUTATED" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 31(21Q22.3) WILD-TYPE"   "DEL PEAK 31(21Q22.3) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 31(21Q22.3) WILD-TYPE"   "DEL PEAK 31(21Q22.3) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 31(21Q22.3) WILD-TYPE" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 31(21Q22.3) MUTATED" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 31(21Q22.3) WILD-TYPE" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 31(21Q22.3) MUTATED" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 31(21Q22.3) WILD-TYPE" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 31(21Q22.3) MUTATED" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 31(21Q22.3) WILD-TYPE" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK 31(21Q22.3) WILD-TYPE" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 31(21Q22.3) MUTATED"   "DEL PEAK 31(21Q22.3) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 31(21Q22.3) MUTATED"   "DEL PEAK 31(21Q22.3) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 31(21Q22.3) WILD-TYPE" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 31(21Q22.3) WILD-TYPE"   "DEL PEAK 31(21Q22.3) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 31(21Q22.3) WILD-TYPE" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 31(21Q22.3) WILD-TYPE"   "DEL PEAK 31(21Q22.3) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 31(21Q22.3) WILD-TYPE" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK 31(21Q22.3) WILD-TYPE" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 31(21Q22.3) WILD-TYPE"   "DEL PEAK 31(21Q22.3) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 31(21Q22.3) WILD-TYPE"   "DEL PEAK 31(21Q22.3) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 31(21Q22.3) MUTATED" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 31(21Q22.3) MUTATED" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 31(21Q22.3) WILD-TYPE" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 31(21Q22.3) MUTATED"   "DEL PEAK 31(21Q22.3) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 31(21Q22.3) MUTATED" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "DEL PEAK 31(21Q22.3) MUTATED" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-PC-A5DK 
"DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 31(21Q22.3) MUTATED" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 31(21Q22.3) MUTATED" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 31(21Q22.3) WILD-TYPE"   "DEL PEAK 31(21Q22.3) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 31(21Q22.3) WILD-TYPE"   "DEL PEAK 31(21Q22.3) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 31(21Q22.3) WILD-TYPE" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 31(21Q22.3) MUTATED" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 31(21Q22.3) WILD-TYPE" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 31(21Q22.3) MUTATED" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 31(21Q22.3) WILD-TYPE" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 31(21Q22.3) MUTATED" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 31(21Q22.3) WILD-TYPE" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK 31(21Q22.3) WILD-TYPE" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 31(21Q22.3) MUTATED"   "DEL PEAK 31(21Q22.3) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 31(21Q22.3) MUTATED"   "DEL PEAK 31(21Q22.3) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 31(21Q22.3) WILD-TYPE" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 31(21Q22.3) WILD-TYPE"   "DEL PEAK 31(21Q22.3) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 31(21Q22.3) WILD-TYPE" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 31(21Q22.3) WILD-TYPE"   "DEL PEAK 31(21Q22.3) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 31(21Q22.3) WILD-TYPE" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK 31(21Q22.3) WILD-TYPE" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 31(21Q22.3) WILD-TYPE"   "DEL PEAK 31(21Q22.3) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 31(21Q22.3) WILD-TYPE"   "DEL PEAK 31(21Q22.3) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 31(21Q22.3) MUTATED" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 31(21Q22.3) MUTATED" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 31(21Q22.3) WILD-TYPE" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 31(21Q22.3) MUTATED"   "DEL PEAK 31(21Q22.3) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 31(21Q22.3) MUTATED" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "DEL PEAK 31(21Q22.3) MUTATED" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-PC-A5DK 
"DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 31(21Q22.3) MUTATED" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 31(21Q22.3) MUTATED" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 31(21Q22.3) WILD-TYPE"   "DEL PEAK 31(21Q22.3) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 31(21Q22.3) WILD-TYPE"   "DEL PEAK 31(21Q22.3) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 31(21Q22.3) WILD-TYPE" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 31(21Q22.3) MUTATED" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 31(21Q22.3) WILD-TYPE" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 31(21Q22.3) MUTATED" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 31(21Q22.3) WILD-TYPE" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 31(21Q22.3) MUTATED" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 31(21Q22.3) WILD-TYPE" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK 31(21Q22.3) WILD-TYPE" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 31(21Q22.3) MUTATED"   "DEL PEAK 31(21Q22.3) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 31(21Q22.3) MUTATED"   "DEL PEAK 31(21Q22.3) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 31(21Q22.3) WILD-TYPE" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-FX-A2QS 
"DEL PEAK 31(21Q22.3) WILD-TYPE"   "DEL PEAK 31(21Q22.3) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 31(21Q22.3) WILD-TYPE" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 31(21Q22.3) WILD-TYPE"   "DEL PEAK 31(21Q22.3) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 31(21Q22.3) WILD-TYPE" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK 31(21Q22.3) WILD-TYPE" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 31(21Q22.3) WILD-TYPE"   "DEL PEAK 31(21Q22.3) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 31(21Q22.3) WILD-TYPE"   "DEL PEAK 31(21Q22.3) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 31(21Q22.3) MUTATED" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 31(21Q22.3) MUTATED" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 31(21Q22.3) WILD-TYPE" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 31(21Q22.3) MUTATED"   "DEL PEAK 31(21Q22.3) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 31(21Q22.3) MUTATED" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-MO-A47R 
  "DEL PEAK 31(21Q22.3) MUTATED" "DEL PEAK 31(21Q22.3) WILD-TYPE" 
                    TCGA-PC-A5DK 
"DEL PEAK 31(21Q22.3) WILD-TYPE" 
[1] "hr=" "1.3"
D44V2, continuous
D44V3, binary
                                cls
clus                              0  1
  DEL PEAK 31(21Q22.3) MUTATED   11 10
  DEL PEAK 31(21Q22.3) WILD-TYPE 17 19
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(21Q22.3) MUTATED     11   10
  DEL PEAK 31(21Q22.3) WILD-TYPE   17   19
        clus
vv       DEL PEAK 31(21Q22.3) MUTATED DEL PEAK 31(21Q22.3) WILD-TYPE
  FEMALE                           11                             17
  MALE                             10                             19

Clustering(45) Variable = DEL PEAK 32(22Q13.32) MUTATION ANALYSIS
D45V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 32(22Q13.32) MUTATED   17  9
  DEL PEAK 32(22Q13.32) WILD-TYPE 22  9
  DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE 
                             26                              31 
  DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE 
                              9                               9 
$`DEL PEAK 32(22Q13.32) MUTATED`
TCGA-DX-A1KW TCGA-DX-A23R TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A2IZ TCGA-DX-A3LS 
        2.04        74.66        66.87         6.28         8.55         9.01 
TCGA-DX-A3LT TCGA-DX-A3LW TCGA-DX-A3M1 TCGA-DX-A3U7 TCGA-FX-A2QS TCGA-FX-A3RE 
       23.08       108.10        20.02        42.77         0.46         0.07 
TCGA-FX-A48G TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EJ TCGA-IF-A4AJ 
        0.07         4.54        12.62        21.37         3.22        25.22 
TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE 
      143.41       116.88        13.58         5.88        22.62         6.25 
TCGA-JV-A5VF TCGA-KF-A41W 
        1.05        11.70 

$`DEL PEAK 32(22Q13.32) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 
       14.04        27.19        12.85        24.49        18.51        46.68 
TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23Z 
       42.44        31.56        29.85         5.23        76.37        27.78 
TCGA-DX-A240 TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LU TCGA-DX-A3LY 
       60.30         9.70        53.26        43.04        70.49        17.10 
TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-FX-A3NJ TCGA-HB-A2OT TCGA-HB-A43Z 
       15.02        17.75         4.50         0.10        26.89         4.14 
TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IW-A3M4 TCGA-MO-A47R 
        8.94         1.38        31.76        28.21        73.28         0.10 
TCGA-PC-A5DK 
       75.48 

  DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE 
                           0.07                            0.10 
  DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE 
                         143.41                           76.37 
  DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE 
                          12.16                           26.89 
[1] "0.1 - 143.4 (12.2)" "0.1 - 76.4 (26.9)" 
                     TCGA-DX-A1KU                      TCGA-DX-A1KW 
"DEL PEAK 32(22Q13.32) WILD-TYPE"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-DX-A1KX                      TCGA-DX-A1KY 
"DEL PEAK 32(22Q13.32) WILD-TYPE" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A1KZ                      TCGA-DX-A1L0 
"DEL PEAK 32(22Q13.32) WILD-TYPE" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A1L1                      TCGA-DX-A1L2 
"DEL PEAK 32(22Q13.32) WILD-TYPE" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A1L3                      TCGA-DX-A1L4 
"DEL PEAK 32(22Q13.32) WILD-TYPE" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A23R                      TCGA-DX-A23T 
  "DEL PEAK 32(22Q13.32) MUTATED" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A23U                      TCGA-DX-A23V 
"DEL PEAK 32(22Q13.32) WILD-TYPE"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-DX-A23Y                      TCGA-DX-A23Z 
  "DEL PEAK 32(22Q13.32) MUTATED" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A240                      TCGA-DX-A2IZ 
"DEL PEAK 32(22Q13.32) WILD-TYPE"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-DX-A2J0                      TCGA-DX-A2J1 
"DEL PEAK 32(22Q13.32) WILD-TYPE" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A2J4                      TCGA-DX-A3LS 
"DEL PEAK 32(22Q13.32) WILD-TYPE"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-DX-A3LT                      TCGA-DX-A3LU 
  "DEL PEAK 32(22Q13.32) MUTATED" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A3LW                      TCGA-DX-A3LY 
  "DEL PEAK 32(22Q13.32) MUTATED" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A3M1                      TCGA-DX-A3U5 
  "DEL PEAK 32(22Q13.32) MUTATED" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A3U6                      TCGA-DX-A3U7 
"DEL PEAK 32(22Q13.32) WILD-TYPE"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-DX-A3U8                      TCGA-FX-A2QS 
"DEL PEAK 32(22Q13.32) WILD-TYPE"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-FX-A3NJ                      TCGA-FX-A3RE 
"DEL PEAK 32(22Q13.32) WILD-TYPE"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-FX-A48G                      TCGA-HB-A2OT 
  "DEL PEAK 32(22Q13.32) MUTATED" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-HB-A3YV                      TCGA-HB-A43Z 
  "DEL PEAK 32(22Q13.32) MUTATED" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-HB-A5W3                      TCGA-IE-A4EH 
  "DEL PEAK 32(22Q13.32) MUTATED"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-IE-A4EI                      TCGA-IE-A4EJ 
"DEL PEAK 32(22Q13.32) WILD-TYPE"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-IE-A4EK                      TCGA-IF-A4AJ 
"DEL PEAK 32(22Q13.32) WILD-TYPE"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-IF-A4AK                      TCGA-IS-A3K6 
"DEL PEAK 32(22Q13.32) WILD-TYPE" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-IS-A3K7                      TCGA-IS-A3K8 
  "DEL PEAK 32(22Q13.32) MUTATED"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-IS-A3KA                      TCGA-IW-A3M4 
  "DEL PEAK 32(22Q13.32) MUTATED" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-IW-A3M5                      TCGA-IW-A3M6 
  "DEL PEAK 32(22Q13.32) MUTATED"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-JV-A5VE                      TCGA-JV-A5VF 
  "DEL PEAK 32(22Q13.32) MUTATED"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-KF-A41W                      TCGA-MO-A47R 
  "DEL PEAK 32(22Q13.32) MUTATED" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-PC-A5DK 
"DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A1KU                      TCGA-DX-A1KW 
"DEL PEAK 32(22Q13.32) WILD-TYPE"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-DX-A1KX                      TCGA-DX-A1KY 
"DEL PEAK 32(22Q13.32) WILD-TYPE" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A1KZ                      TCGA-DX-A1L0 
"DEL PEAK 32(22Q13.32) WILD-TYPE" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A1L1                      TCGA-DX-A1L2 
"DEL PEAK 32(22Q13.32) WILD-TYPE" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A1L3                      TCGA-DX-A1L4 
"DEL PEAK 32(22Q13.32) WILD-TYPE" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A23R                      TCGA-DX-A23T 
  "DEL PEAK 32(22Q13.32) MUTATED" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A23U                      TCGA-DX-A23V 
"DEL PEAK 32(22Q13.32) WILD-TYPE"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-DX-A23Y                      TCGA-DX-A23Z 
  "DEL PEAK 32(22Q13.32) MUTATED" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A240                      TCGA-DX-A2IZ 
"DEL PEAK 32(22Q13.32) WILD-TYPE"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-DX-A2J0                      TCGA-DX-A2J1 
"DEL PEAK 32(22Q13.32) WILD-TYPE" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A2J4                      TCGA-DX-A3LS 
"DEL PEAK 32(22Q13.32) WILD-TYPE"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-DX-A3LT                      TCGA-DX-A3LU 
  "DEL PEAK 32(22Q13.32) MUTATED" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A3LW                      TCGA-DX-A3LY 
  "DEL PEAK 32(22Q13.32) MUTATED" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A3M1                      TCGA-DX-A3U5 
  "DEL PEAK 32(22Q13.32) MUTATED" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A3U6                      TCGA-DX-A3U7 
"DEL PEAK 32(22Q13.32) WILD-TYPE"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-DX-A3U8                      TCGA-FX-A2QS 
"DEL PEAK 32(22Q13.32) WILD-TYPE"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-FX-A3NJ                      TCGA-FX-A3RE 
"DEL PEAK 32(22Q13.32) WILD-TYPE"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-FX-A48G                      TCGA-HB-A2OT 
  "DEL PEAK 32(22Q13.32) MUTATED" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-HB-A3YV                      TCGA-HB-A43Z 
  "DEL PEAK 32(22Q13.32) MUTATED" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-HB-A5W3                      TCGA-IE-A4EH 
  "DEL PEAK 32(22Q13.32) MUTATED"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-IE-A4EI                      TCGA-IE-A4EJ 
"DEL PEAK 32(22Q13.32) WILD-TYPE"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-IE-A4EK                      TCGA-IF-A4AJ 
"DEL PEAK 32(22Q13.32) WILD-TYPE"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-IF-A4AK                      TCGA-IS-A3K6 
"DEL PEAK 32(22Q13.32) WILD-TYPE" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-IS-A3K7                      TCGA-IS-A3K8 
  "DEL PEAK 32(22Q13.32) MUTATED"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-IS-A3KA                      TCGA-IW-A3M4 
  "DEL PEAK 32(22Q13.32) MUTATED" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-IW-A3M5                      TCGA-IW-A3M6 
  "DEL PEAK 32(22Q13.32) MUTATED"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-JV-A5VE                      TCGA-JV-A5VF 
  "DEL PEAK 32(22Q13.32) MUTATED"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-KF-A41W                      TCGA-MO-A47R 
  "DEL PEAK 32(22Q13.32) MUTATED" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-PC-A5DK 
"DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A1KU                      TCGA-DX-A1KW 
"DEL PEAK 32(22Q13.32) WILD-TYPE"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-DX-A1KX                      TCGA-DX-A1KY 
"DEL PEAK 32(22Q13.32) WILD-TYPE" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A1KZ                      TCGA-DX-A1L0 
"DEL PEAK 32(22Q13.32) WILD-TYPE" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A1L1                      TCGA-DX-A1L2 
"DEL PEAK 32(22Q13.32) WILD-TYPE" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A1L3                      TCGA-DX-A1L4 
"DEL PEAK 32(22Q13.32) WILD-TYPE" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A23R                      TCGA-DX-A23T 
  "DEL PEAK 32(22Q13.32) MUTATED" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A23U                      TCGA-DX-A23V 
"DEL PEAK 32(22Q13.32) WILD-TYPE"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-DX-A23Y                      TCGA-DX-A23Z 
  "DEL PEAK 32(22Q13.32) MUTATED" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A240                      TCGA-DX-A2IZ 
"DEL PEAK 32(22Q13.32) WILD-TYPE"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-DX-A2J0                      TCGA-DX-A2J1 
"DEL PEAK 32(22Q13.32) WILD-TYPE" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A2J4                      TCGA-DX-A3LS 
"DEL PEAK 32(22Q13.32) WILD-TYPE"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-DX-A3LT                      TCGA-DX-A3LU 
  "DEL PEAK 32(22Q13.32) MUTATED" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A3LW                      TCGA-DX-A3LY 
  "DEL PEAK 32(22Q13.32) MUTATED" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A3M1                      TCGA-DX-A3U5 
  "DEL PEAK 32(22Q13.32) MUTATED" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-DX-A3U6                      TCGA-DX-A3U7 
"DEL PEAK 32(22Q13.32) WILD-TYPE"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-DX-A3U8                      TCGA-FX-A2QS 
"DEL PEAK 32(22Q13.32) WILD-TYPE"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-FX-A3NJ                      TCGA-FX-A3RE 
"DEL PEAK 32(22Q13.32) WILD-TYPE"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-FX-A48G                      TCGA-HB-A2OT 
  "DEL PEAK 32(22Q13.32) MUTATED" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-HB-A3YV                      TCGA-HB-A43Z 
  "DEL PEAK 32(22Q13.32) MUTATED" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-HB-A5W3                      TCGA-IE-A4EH 
  "DEL PEAK 32(22Q13.32) MUTATED"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-IE-A4EI                      TCGA-IE-A4EJ 
"DEL PEAK 32(22Q13.32) WILD-TYPE"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-IE-A4EK                      TCGA-IF-A4AJ 
"DEL PEAK 32(22Q13.32) WILD-TYPE"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-IF-A4AK                      TCGA-IS-A3K6 
"DEL PEAK 32(22Q13.32) WILD-TYPE" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-IS-A3K7                      TCGA-IS-A3K8 
  "DEL PEAK 32(22Q13.32) MUTATED"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-IS-A3KA                      TCGA-IW-A3M4 
  "DEL PEAK 32(22Q13.32) MUTATED" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-IW-A3M5                      TCGA-IW-A3M6 
  "DEL PEAK 32(22Q13.32) MUTATED"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-JV-A5VE                      TCGA-JV-A5VF 
  "DEL PEAK 32(22Q13.32) MUTATED"   "DEL PEAK 32(22Q13.32) MUTATED" 
                     TCGA-KF-A41W                      TCGA-MO-A47R 
  "DEL PEAK 32(22Q13.32) MUTATED" "DEL PEAK 32(22Q13.32) WILD-TYPE" 
                     TCGA-PC-A5DK 
"DEL PEAK 32(22Q13.32) WILD-TYPE" 
[1] "hr=" "1.5"
D45V2, continuous
D45V3, binary
                                 cls
clus                               0  1
  DEL PEAK 32(22Q13.32) MUTATED   17  9
  DEL PEAK 32(22Q13.32) WILD-TYPE 11 20
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 32(22Q13.32) MUTATED     17    9
  DEL PEAK 32(22Q13.32) WILD-TYPE   11   20
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  FEMALE                            17                              11
  MALE                               9                              20

Clustering(46) Variable = DEL PEAK 33(XP21.1) MUTATION ANALYSIS
D46V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 33(XP21.1) MUTATED    7  5
  DEL PEAK 33(XP21.1) WILD-TYPE 32 13
  DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE 
                           12                            45 
  DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE 
                            5                            13 
$`DEL PEAK 33(XP21.1) MUTATED`
TCGA-DX-A1L2 TCGA-DX-A23Y TCGA-DX-A2J0 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A48G 
       42.44         6.28         9.70         4.50         0.46         0.07 
TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K7 TCGA-IW-A3M4 
       12.62        21.37        25.22        31.76       143.41        73.28 

$`DEL PEAK 33(XP21.1) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 
       14.04         2.04        27.19        12.85        24.49        18.51 
TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U 
       46.68        31.56        29.85        74.66         5.23        76.37 
TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J1 TCGA-DX-A2J4 
       66.87        27.78        60.30         8.55        53.26        43.04 
TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 
        9.01        23.08        70.49       108.10        17.10        20.02 
TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-HB-A2OT 
       15.02        17.75        42.77         0.10         0.07        26.89 
TCGA-HB-A3YV TCGA-HB-A43Z TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IS-A3K6 
        4.54         4.14         8.94         3.22         1.38        28.21 
TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF 
      116.88        13.58         5.88        22.62         6.25         1.05 
TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
       11.70         0.10        75.48 

  DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE 
                         0.07                          0.07 
  DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE 
                       143.41                        116.88 
  DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE 
                       16.995                        18.510 
[1] "0.1 - 143.4 (17.0)" "0.1 - 116.9 (18.5)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 33(XP21.1) WILD-TYPE"   "DEL PEAK 33(XP21.1) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK 33(XP21.1) MUTATED" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
  "DEL PEAK 33(XP21.1) MUTATED" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
  "DEL PEAK 33(XP21.1) MUTATED"   "DEL PEAK 33(XP21.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK 33(XP21.1) MUTATED" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "DEL PEAK 33(XP21.1) MUTATED"   "DEL PEAK 33(XP21.1) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 33(XP21.1) WILD-TYPE"   "DEL PEAK 33(XP21.1) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "DEL PEAK 33(XP21.1) MUTATED" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 33(XP21.1) MUTATED" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 33(XP21.1) WILD-TYPE"   "DEL PEAK 33(XP21.1) MUTATED" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-PC-A5DK 
"DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 33(XP21.1) WILD-TYPE"   "DEL PEAK 33(XP21.1) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK 33(XP21.1) MUTATED" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
  "DEL PEAK 33(XP21.1) MUTATED" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
  "DEL PEAK 33(XP21.1) MUTATED"   "DEL PEAK 33(XP21.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK 33(XP21.1) MUTATED" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "DEL PEAK 33(XP21.1) MUTATED"   "DEL PEAK 33(XP21.1) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 33(XP21.1) WILD-TYPE"   "DEL PEAK 33(XP21.1) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "DEL PEAK 33(XP21.1) MUTATED" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 33(XP21.1) MUTATED" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 33(XP21.1) WILD-TYPE"   "DEL PEAK 33(XP21.1) MUTATED" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-PC-A5DK 
"DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 33(XP21.1) WILD-TYPE"   "DEL PEAK 33(XP21.1) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK 33(XP21.1) MUTATED" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
  "DEL PEAK 33(XP21.1) MUTATED" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
  "DEL PEAK 33(XP21.1) MUTATED"   "DEL PEAK 33(XP21.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK 33(XP21.1) MUTATED" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "DEL PEAK 33(XP21.1) MUTATED"   "DEL PEAK 33(XP21.1) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 33(XP21.1) WILD-TYPE"   "DEL PEAK 33(XP21.1) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "DEL PEAK 33(XP21.1) MUTATED" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 33(XP21.1) MUTATED" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 33(XP21.1) WILD-TYPE"   "DEL PEAK 33(XP21.1) MUTATED" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"DEL PEAK 33(XP21.1) WILD-TYPE" "DEL PEAK 33(XP21.1) WILD-TYPE" 
                   TCGA-PC-A5DK 
"DEL PEAK 33(XP21.1) WILD-TYPE" 
[1] "hr=" "1.5"
D46V2, continuous
D46V3, binary
                               cls
clus                             0  1
  DEL PEAK 33(XP21.1) MUTATED    7  5
  DEL PEAK 33(XP21.1) WILD-TYPE 21 24
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 33(XP21.1) MUTATED      7    5
  DEL PEAK 33(XP21.1) WILD-TYPE   21   24
        clus
vv       DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE
  FEMALE                           7                            21
  MALE                             5                            24

Clustering(47) Variable = DEL PEAK 34(XQ21.1) MUTATION ANALYSIS
D47V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 34(XQ21.1) MUTATED   19  4
  DEL PEAK 34(XQ21.1) WILD-TYPE 20 14
  DEL PEAK 34(XQ21.1) MUTATED DEL PEAK 34(XQ21.1) WILD-TYPE 
                           23                            34 
  DEL PEAK 34(XQ21.1) MUTATED DEL PEAK 34(XQ21.1) WILD-TYPE 
                            4                            14 
$`DEL PEAK 34(XQ21.1) MUTATED`
TCGA-DX-A1KX TCGA-DX-A1L2 TCGA-DX-A23R TCGA-DX-A240 TCGA-DX-A2J0 TCGA-DX-A3LW 
       27.19        42.44        74.66        60.30         9.70       108.10 
TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-FX-A2QS TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT 
       20.02        15.02         0.46         0.07         0.07        26.89 
TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ 
        4.54        12.62        21.37         3.22         1.38        25.22 
TCGA-IF-A4AK TCGA-IS-A3K7 TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-JV-A5VE 
       31.76       143.41        73.28        22.62         6.25 

$`DEL PEAK 34(XQ21.1) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 
       14.04         2.04        12.85        24.49        18.51        46.68 
TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y 
       31.56        29.85         5.23        76.37        66.87         6.28 
TCGA-DX-A23Z TCGA-DX-A2IZ TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT 
       27.78         8.55        53.26        43.04         9.01        23.08 
TCGA-DX-A3LU TCGA-DX-A3LY TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A3NJ 
       70.49        17.10        17.75        42.77         4.50         0.10 
TCGA-HB-A43Z TCGA-IE-A4EI TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M5 
        4.14         8.94        28.21       116.88        13.58         5.88 
TCGA-JV-A5VF TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
        1.05        11.70         0.10        75.48 

  DEL PEAK 34(XQ21.1) MUTATED DEL PEAK 34(XQ21.1) WILD-TYPE 
                         0.07                          0.10 
  DEL PEAK 34(XQ21.1) MUTATED DEL PEAK 34(XQ21.1) WILD-TYPE 
                       143.41                        116.88 
  DEL PEAK 34(XQ21.1) MUTATED DEL PEAK 34(XQ21.1) WILD-TYPE 
                       21.370                        17.425 
[1] "0.1 - 143.4 (21.4)" "0.1 - 116.9 (17.4)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 34(XQ21.1) WILD-TYPE" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK 34(XQ21.1) MUTATED" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK 34(XQ21.1) WILD-TYPE" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 34(XQ21.1) WILD-TYPE"   "DEL PEAK 34(XQ21.1) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 34(XQ21.1) WILD-TYPE" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK 34(XQ21.1) MUTATED" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 34(XQ21.1) WILD-TYPE" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"DEL PEAK 34(XQ21.1) WILD-TYPE" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
  "DEL PEAK 34(XQ21.1) MUTATED" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
  "DEL PEAK 34(XQ21.1) MUTATED" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 34(XQ21.1) WILD-TYPE" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 34(XQ21.1) WILD-TYPE" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK 34(XQ21.1) MUTATED" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 34(XQ21.1) MUTATED"   "DEL PEAK 34(XQ21.1) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 34(XQ21.1) WILD-TYPE" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK 34(XQ21.1) WILD-TYPE"   "DEL PEAK 34(XQ21.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 34(XQ21.1) WILD-TYPE"   "DEL PEAK 34(XQ21.1) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK 34(XQ21.1) MUTATED"   "DEL PEAK 34(XQ21.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 34(XQ21.1) MUTATED" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "DEL PEAK 34(XQ21.1) MUTATED"   "DEL PEAK 34(XQ21.1) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 34(XQ21.1) WILD-TYPE"   "DEL PEAK 34(XQ21.1) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
  "DEL PEAK 34(XQ21.1) MUTATED"   "DEL PEAK 34(XQ21.1) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "DEL PEAK 34(XQ21.1) MUTATED" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 34(XQ21.1) MUTATED" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 34(XQ21.1) WILD-TYPE"   "DEL PEAK 34(XQ21.1) MUTATED" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK 34(XQ21.1) WILD-TYPE"   "DEL PEAK 34(XQ21.1) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK 34(XQ21.1) MUTATED" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"DEL PEAK 34(XQ21.1) WILD-TYPE" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-PC-A5DK 
"DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 34(XQ21.1) WILD-TYPE" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK 34(XQ21.1) MUTATED" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK 34(XQ21.1) WILD-TYPE" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 34(XQ21.1) WILD-TYPE"   "DEL PEAK 34(XQ21.1) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 34(XQ21.1) WILD-TYPE" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK 34(XQ21.1) MUTATED" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 34(XQ21.1) WILD-TYPE" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"DEL PEAK 34(XQ21.1) WILD-TYPE" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
  "DEL PEAK 34(XQ21.1) MUTATED" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
  "DEL PEAK 34(XQ21.1) MUTATED" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 34(XQ21.1) WILD-TYPE" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 34(XQ21.1) WILD-TYPE" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK 34(XQ21.1) MUTATED" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 34(XQ21.1) MUTATED"   "DEL PEAK 34(XQ21.1) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 34(XQ21.1) WILD-TYPE" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK 34(XQ21.1) WILD-TYPE"   "DEL PEAK 34(XQ21.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 34(XQ21.1) WILD-TYPE"   "DEL PEAK 34(XQ21.1) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK 34(XQ21.1) MUTATED"   "DEL PEAK 34(XQ21.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 34(XQ21.1) MUTATED" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "DEL PEAK 34(XQ21.1) MUTATED"   "DEL PEAK 34(XQ21.1) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 34(XQ21.1) WILD-TYPE"   "DEL PEAK 34(XQ21.1) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
  "DEL PEAK 34(XQ21.1) MUTATED"   "DEL PEAK 34(XQ21.1) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "DEL PEAK 34(XQ21.1) MUTATED" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 34(XQ21.1) MUTATED" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 34(XQ21.1) WILD-TYPE"   "DEL PEAK 34(XQ21.1) MUTATED" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK 34(XQ21.1) WILD-TYPE"   "DEL PEAK 34(XQ21.1) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK 34(XQ21.1) MUTATED" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"DEL PEAK 34(XQ21.1) WILD-TYPE" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-PC-A5DK 
"DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 34(XQ21.1) WILD-TYPE" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK 34(XQ21.1) MUTATED" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK 34(XQ21.1) WILD-TYPE" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 34(XQ21.1) WILD-TYPE"   "DEL PEAK 34(XQ21.1) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 34(XQ21.1) WILD-TYPE" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK 34(XQ21.1) MUTATED" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 34(XQ21.1) WILD-TYPE" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"DEL PEAK 34(XQ21.1) WILD-TYPE" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
  "DEL PEAK 34(XQ21.1) MUTATED" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
  "DEL PEAK 34(XQ21.1) MUTATED" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 34(XQ21.1) WILD-TYPE" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 34(XQ21.1) WILD-TYPE" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK 34(XQ21.1) MUTATED" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 34(XQ21.1) MUTATED"   "DEL PEAK 34(XQ21.1) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 34(XQ21.1) WILD-TYPE" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK 34(XQ21.1) WILD-TYPE"   "DEL PEAK 34(XQ21.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 34(XQ21.1) WILD-TYPE"   "DEL PEAK 34(XQ21.1) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK 34(XQ21.1) MUTATED"   "DEL PEAK 34(XQ21.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 34(XQ21.1) MUTATED" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "DEL PEAK 34(XQ21.1) MUTATED"   "DEL PEAK 34(XQ21.1) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 34(XQ21.1) WILD-TYPE"   "DEL PEAK 34(XQ21.1) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
  "DEL PEAK 34(XQ21.1) MUTATED"   "DEL PEAK 34(XQ21.1) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "DEL PEAK 34(XQ21.1) MUTATED" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 34(XQ21.1) MUTATED" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 34(XQ21.1) WILD-TYPE"   "DEL PEAK 34(XQ21.1) MUTATED" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK 34(XQ21.1) WILD-TYPE"   "DEL PEAK 34(XQ21.1) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK 34(XQ21.1) MUTATED" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"DEL PEAK 34(XQ21.1) WILD-TYPE" "DEL PEAK 34(XQ21.1) WILD-TYPE" 
                   TCGA-PC-A5DK 
"DEL PEAK 34(XQ21.1) WILD-TYPE" 
[1] "hr=" "2.4"
D47V2, continuous
D47V3, binary
                               cls
clus                             0  1
  DEL PEAK 34(XQ21.1) MUTATED   14  9
  DEL PEAK 34(XQ21.1) WILD-TYPE 14 20
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 34(XQ21.1) MUTATED     14    9
  DEL PEAK 34(XQ21.1) WILD-TYPE   14   20
        clus
vv       DEL PEAK 34(XQ21.1) MUTATED DEL PEAK 34(XQ21.1) WILD-TYPE
  FEMALE                          14                            14
  MALE                             9                            20

Clustering(48) Variable = DEL PEAK 35(XQ27.1) MUTATION ANALYSIS
D48V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 35(XQ27.1) MUTATED   17  8
  DEL PEAK 35(XQ27.1) WILD-TYPE 22 10
  DEL PEAK 35(XQ27.1) MUTATED DEL PEAK 35(XQ27.1) WILD-TYPE 
                           25                            32 
  DEL PEAK 35(XQ27.1) MUTATED DEL PEAK 35(XQ27.1) WILD-TYPE 
                            8                            10 
$`DEL PEAK 35(XQ27.1) MUTATED`
TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A23R 
       27.19        12.85        18.51        46.68        42.44        74.66 
TCGA-DX-A240 TCGA-DX-A2J0 TCGA-DX-A3LW TCGA-DX-A3LY TCGA-FX-A48G TCGA-HB-A2OT 
       60.30         9.70       108.10        17.10         0.07        26.89 
TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EJ TCGA-IF-A4AJ 
        4.54         4.14        12.62        21.37         3.22        25.22 
TCGA-IF-A4AK TCGA-IS-A3K7 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-JV-A5VE 
       31.76       143.41        13.58        73.28        22.62         6.25 
TCGA-JV-A5VF 
        1.05 

$`DEL PEAK 35(XQ27.1) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KZ TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T 
       14.04         2.04        24.49        31.56        29.85         5.23 
TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A2IZ TCGA-DX-A2J1 
       76.37        66.87         6.28        27.78         8.55        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3M1 TCGA-DX-A3U5 
       43.04         9.01        23.08        70.49        20.02        15.02 
TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE 
       17.75        42.77         4.50         0.46         0.10         0.07 
TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IW-A3M5 TCGA-KF-A41W 
        8.94         1.38        28.21       116.88         5.88        11.70 
TCGA-MO-A47R TCGA-PC-A5DK 
        0.10        75.48 

  DEL PEAK 35(XQ27.1) MUTATED DEL PEAK 35(XQ27.1) WILD-TYPE 
                         0.07                          0.07 
  DEL PEAK 35(XQ27.1) MUTATED DEL PEAK 35(XQ27.1) WILD-TYPE 
                       143.41                        116.88 
  DEL PEAK 35(XQ27.1) MUTATED DEL PEAK 35(XQ27.1) WILD-TYPE 
                       21.370                        16.385 
[1] "0.1 - 143.4 (21.4)" "0.1 - 116.9 (16.4)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK 35(XQ27.1) MUTATED"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK 35(XQ27.1) WILD-TYPE"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK 35(XQ27.1) MUTATED"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK 35(XQ27.1) MUTATED" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
  "DEL PEAK 35(XQ27.1) MUTATED" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
  "DEL PEAK 35(XQ27.1) MUTATED" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK 35(XQ27.1) MUTATED"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK 35(XQ27.1) MUTATED"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 35(XQ27.1) MUTATED"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "DEL PEAK 35(XQ27.1) MUTATED"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 35(XQ27.1) WILD-TYPE"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 35(XQ27.1) WILD-TYPE"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "DEL PEAK 35(XQ27.1) MUTATED" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 35(XQ27.1) MUTATED" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK 35(XQ27.1) MUTATED"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK 35(XQ27.1) WILD-TYPE"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK 35(XQ27.1) MUTATED"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-PC-A5DK 
"DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK 35(XQ27.1) MUTATED"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK 35(XQ27.1) WILD-TYPE"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK 35(XQ27.1) MUTATED"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK 35(XQ27.1) MUTATED" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
  "DEL PEAK 35(XQ27.1) MUTATED" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
  "DEL PEAK 35(XQ27.1) MUTATED" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK 35(XQ27.1) MUTATED"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK 35(XQ27.1) MUTATED"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 35(XQ27.1) MUTATED"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "DEL PEAK 35(XQ27.1) MUTATED"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 35(XQ27.1) WILD-TYPE"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 35(XQ27.1) WILD-TYPE"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "DEL PEAK 35(XQ27.1) MUTATED" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 35(XQ27.1) MUTATED" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK 35(XQ27.1) MUTATED"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK 35(XQ27.1) WILD-TYPE"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK 35(XQ27.1) MUTATED"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-PC-A5DK 
"DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK 35(XQ27.1) MUTATED"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK 35(XQ27.1) WILD-TYPE"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK 35(XQ27.1) MUTATED"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK 35(XQ27.1) MUTATED" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
  "DEL PEAK 35(XQ27.1) MUTATED" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
  "DEL PEAK 35(XQ27.1) MUTATED" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK 35(XQ27.1) MUTATED"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-FX-A2QS 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK 35(XQ27.1) MUTATED"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 35(XQ27.1) MUTATED"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "DEL PEAK 35(XQ27.1) MUTATED"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 35(XQ27.1) WILD-TYPE"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 35(XQ27.1) WILD-TYPE"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "DEL PEAK 35(XQ27.1) MUTATED" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 35(XQ27.1) MUTATED" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK 35(XQ27.1) MUTATED"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK 35(XQ27.1) WILD-TYPE"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK 35(XQ27.1) MUTATED"   "DEL PEAK 35(XQ27.1) MUTATED" 
                   TCGA-KF-A41W                    TCGA-MO-A47R 
"DEL PEAK 35(XQ27.1) WILD-TYPE" "DEL PEAK 35(XQ27.1) WILD-TYPE" 
                   TCGA-PC-A5DK 
"DEL PEAK 35(XQ27.1) WILD-TYPE" 
[1] "hr=" "1.1"
D48V2, continuous
D48V3, binary
                               cls
clus                             0  1
  DEL PEAK 35(XQ27.1) MUTATED   15 10
  DEL PEAK 35(XQ27.1) WILD-TYPE 13 19
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 35(XQ27.1) MUTATED     15   10
  DEL PEAK 35(XQ27.1) WILD-TYPE   13   19
        clus
vv       DEL PEAK 35(XQ27.1) MUTATED DEL PEAK 35(XQ27.1) WILD-TYPE
  FEMALE                          15                            13
  MALE                            10                            19
> q(save="no")
