
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Correlate_Cluster_cnvarms_onlysig/broadinstitute.org/cancer.genome.analysis/00508/6/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Correlate_Cluster_cnvarms_onlysig/broadinstitute.org/cancer.genome.analysis/00508/6/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/cnvarms2cluster/SARC-TP/4431731/broad_values_by_arm.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering_new/SARC-TP/4431599/SARC-TP.transferedmergedcluster.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=SARC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=SARC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=98, in cluster file=83, common to both=83
[1] "Reduce the number of clustering variables from 80 to 77."
[1] 77 83
[1] "1p gain"
[1] 3
      1P GAIN CNV 1P GAIN WILD-TYPE 
               14                69 
      1P GAIN CNV 1P GAIN WILD-TYPE 
               14                69 
[1] "1q gain"
[1] 3
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
               12                71 
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
               12                71 
[1] "2p gain"
[1] 3
      2P GAIN CNV 2P GAIN WILD-TYPE 
                5                78 
      2P GAIN CNV 2P GAIN WILD-TYPE 
                5                78 
[1] "2q gain"
[1] 3
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
                3                80 
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
                3                80 
[1] "3p gain"
[1] 3
      3P GAIN CNV 3P GAIN WILD-TYPE 
                4                79 
      3P GAIN CNV 3P GAIN WILD-TYPE 
                4                79 
[1] "3q gain"
[1] 3
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
                4                79 
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
                4                79 
[1] "4p gain"
[1] 3
      4P GAIN CNV 4P GAIN WILD-TYPE 
                8                75 
      4P GAIN CNV 4P GAIN WILD-TYPE 
                8                75 
[1] "4q gain"
[1] 3
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
                4                79 
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
                4                79 
[1] "5p gain"
[1] 3
      5P GAIN CNV 5P GAIN WILD-TYPE 
               19                64 
      5P GAIN CNV 5P GAIN WILD-TYPE 
               19                64 
[1] "5q gain"
[1] 3
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
               14                69 
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
               14                69 
[1] "6p gain"
[1] 3
      6P GAIN CNV 6P GAIN WILD-TYPE 
               11                72 
      6P GAIN CNV 6P GAIN WILD-TYPE 
               11                72 
[1] "6q gain"
[1] 3
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
               12                71 
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
               12                71 
[1] "7p gain"
[1] 3
      7P GAIN CNV 7P GAIN WILD-TYPE 
               15                68 
      7P GAIN CNV 7P GAIN WILD-TYPE 
               15                68 
[1] "7q gain"
[1] 3
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
               13                70 
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
               13                70 
[1] "8p gain"
[1] 3
      8P GAIN CNV 8P GAIN WILD-TYPE 
               15                68 
      8P GAIN CNV 8P GAIN WILD-TYPE 
               15                68 
[1] "8q gain"
[1] 3
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
               17                66 
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
               17                66 
[1] "9p gain"
[1] 3
      9P GAIN CNV 9P GAIN WILD-TYPE 
                7                76 
      9P GAIN CNV 9P GAIN WILD-TYPE 
                7                76 
[1] "9q gain"
[1] 3
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
               10                73 
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
               10                73 
[1] "11p gain"
[1] 3
      11P GAIN CNV 11P GAIN WILD-TYPE 
                 3                 80 
      11P GAIN CNV 11P GAIN WILD-TYPE 
                 3                 80 
[1] "11q gain"
[1] 3
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
                 3                 80 
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
                 3                 80 
[1] "12p gain"
[1] 3
      12P GAIN CNV 12P GAIN WILD-TYPE 
                10                 73 
      12P GAIN CNV 12P GAIN WILD-TYPE 
                10                 73 
[1] "12q gain"
[1] 3
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
                 5                 78 
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
                 5                 78 
[1] "14q gain"
[1] 3
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
                 4                 79 
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
                 4                 79 
[1] "15q gain"
[1] 3
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                13                 70 
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                13                 70 
[1] "16p gain"
[1] 3
      16P GAIN CNV 16P GAIN WILD-TYPE 
                 8                 75 
      16P GAIN CNV 16P GAIN WILD-TYPE 
                 8                 75 
[1] "16q gain"
[1] 3
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                 3                 80 
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                 3                 80 
[1] "17p gain"
[1] 3
      17P GAIN CNV 17P GAIN WILD-TYPE 
                10                 73 
      17P GAIN CNV 17P GAIN WILD-TYPE 
                10                 73 
[1] "17q gain"
[1] 3
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
                 8                 75 
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
                 8                 75 
[1] "18p gain"
[1] 3
      18P GAIN CNV 18P GAIN WILD-TYPE 
                12                 71 
      18P GAIN CNV 18P GAIN WILD-TYPE 
                12                 71 
[1] "18q gain"
[1] 3
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
                10                 73 
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
                10                 73 
[1] "19p gain"
[1] 3
      19P GAIN CNV 19P GAIN WILD-TYPE 
                16                 67 
      19P GAIN CNV 19P GAIN WILD-TYPE 
                16                 67 
[1] "19q gain"
[1] 3
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
                11                 72 
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
                11                 72 
[1] "20p gain"
[1] 3
      20P GAIN CNV 20P GAIN WILD-TYPE 
                19                 64 
      20P GAIN CNV 20P GAIN WILD-TYPE 
                19                 64 
[1] "20q gain"
[1] 3
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
                22                 61 
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
                22                 61 
[1] "21q gain"
[1] 3
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
                15                 68 
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
                15                 68 
[1] "22q gain"
[1] 3
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
                 9                 74 
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
                 9                 74 
[1] "Xq gain"
[1] 3
      XQ GAIN CNV XQ GAIN WILD-TYPE 
                3                80 
      XQ GAIN CNV XQ GAIN WILD-TYPE 
                3                80 
[1] "1p loss"
[1] 3
      1P LOSS CNV 1P LOSS WILD-TYPE 
                9                74 
      1P LOSS CNV 1P LOSS WILD-TYPE 
                9                74 
[1] "1q loss"
[1] 3
      1Q LOSS CNV 1Q LOSS WILD-TYPE 
                7                76 
      1Q LOSS CNV 1Q LOSS WILD-TYPE 
                7                76 
[1] "2p loss"
[1] 3
      2P LOSS CNV 2P LOSS WILD-TYPE 
               16                67 
      2P LOSS CNV 2P LOSS WILD-TYPE 
               16                67 
[1] "2q loss"
[1] 3
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
               16                67 
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
               16                67 
[1] "3p loss"
[1] 3
      3P LOSS CNV 3P LOSS WILD-TYPE 
               13                70 
      3P LOSS CNV 3P LOSS WILD-TYPE 
               13                70 
[1] "3q loss"
[1] 3
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
               15                68 
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
               15                68 
[1] "4p loss"
[1] 3
      4P LOSS CNV 4P LOSS WILD-TYPE 
               10                73 
      4P LOSS CNV 4P LOSS WILD-TYPE 
               10                73 
[1] "4q loss"
[1] 3
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
               10                73 
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
               10                73 
[1] "5p loss"
[1] 3
      5P LOSS CNV 5P LOSS WILD-TYPE 
                6                77 
      5P LOSS CNV 5P LOSS WILD-TYPE 
                6                77 
[1] "5q loss"
[1] 3
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
                6                77 
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
                6                77 
[1] "6p loss"
[1] 3
      6P LOSS CNV 6P LOSS WILD-TYPE 
               12                71 
      6P LOSS CNV 6P LOSS WILD-TYPE 
               12                71 
[1] "6q loss"
[1] 3
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
                7                76 
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
                7                76 
[1] "7p loss"
[1] 3
      7P LOSS CNV 7P LOSS WILD-TYPE 
               10                73 
      7P LOSS CNV 7P LOSS WILD-TYPE 
               10                73 
[1] "7q loss"
[1] 3
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
                8                75 
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
                8                75 
[1] "8p loss"
[1] 3
      8P LOSS CNV 8P LOSS WILD-TYPE 
               14                69 
      8P LOSS CNV 8P LOSS WILD-TYPE 
               14                69 
[1] "8q loss"
[1] 3
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
                8                75 
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
                8                75 
[1] "9p loss"
[1] 3
      9P LOSS CNV 9P LOSS WILD-TYPE 
               17                66 
      9P LOSS CNV 9P LOSS WILD-TYPE 
               17                66 
[1] "9q loss"
[1] 3
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
                8                75 
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
                8                75 
[1] "10p loss"
[1] 3
      10P LOSS CNV 10P LOSS WILD-TYPE 
                28                 55 
      10P LOSS CNV 10P LOSS WILD-TYPE 
                28                 55 
[1] "10q loss"
[1] 3
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
                32                 51 
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
                32                 51 
[1] "11p loss"
[1] 3
      11P LOSS CNV 11P LOSS WILD-TYPE 
                26                 57 
      11P LOSS CNV 11P LOSS WILD-TYPE 
                26                 57 
[1] "11q loss"
[1] 3
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
                21                 62 
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
                21                 62 
[1] "12p loss"
[1] 3
      12P LOSS CNV 12P LOSS WILD-TYPE 
                 9                 74 
      12P LOSS CNV 12P LOSS WILD-TYPE 
                 9                 74 
[1] "12q loss"
[1] 3
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                13                 70 
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                13                 70 
[1] "13q loss"
[1] 3
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
                34                 49 
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
                34                 49 
[1] "14q loss"
[1] 3
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
                24                 59 
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
                24                 59 
[1] "15q loss"
[1] 3
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
                11                 72 
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
                11                 72 
[1] "16p loss"
[1] 3
      16P LOSS CNV 16P LOSS WILD-TYPE 
                16                 67 
      16P LOSS CNV 16P LOSS WILD-TYPE 
                16                 67 
[1] "16q loss"
[1] 3
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
                34                 49 
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
                34                 49 
[1] "17p loss"
[1] 3
      17P LOSS CNV 17P LOSS WILD-TYPE 
                12                 71 
      17P LOSS CNV 17P LOSS WILD-TYPE 
                12                 71 
[1] "17q loss"
[1] 3
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
                 8                 75 
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
                 8                 75 
[1] "18p loss"
[1] 3
      18P LOSS CNV 18P LOSS WILD-TYPE 
                13                 70 
      18P LOSS CNV 18P LOSS WILD-TYPE 
                13                 70 
[1] "18q loss"
[1] 3
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
                14                 69 
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
                14                 69 
[1] "19p loss"
[1] 3
      19P LOSS CNV 19P LOSS WILD-TYPE 
                 4                 79 
      19P LOSS CNV 19P LOSS WILD-TYPE 
                 4                 79 
[1] "19q loss"
[1] 3
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
                 9                 74 
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
                 9                 74 
[1] "20p loss"
[1] 3
      20P LOSS CNV 20P LOSS WILD-TYPE 
                10                 73 
      20P LOSS CNV 20P LOSS WILD-TYPE 
                10                 73 
[1] "20q loss"
[1] 3
      20Q LOSS CNV 20Q LOSS WILD-TYPE 
                 4                 79 
      20Q LOSS CNV 20Q LOSS WILD-TYPE 
                 4                 79 
[1] "21q loss"
[1] 3
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
                12                 71 
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
                12                 71 
[1] "22q loss"
[1] 3
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
                21                 62 
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
                21                 62 
[1] "Xq loss"
[1] 3
      XQ LOSS CNV XQ LOSS WILD-TYPE 
               14                69 
      XQ LOSS CNV XQ LOSS WILD-TYPE 
               14                69 
[1] "data2feature, selection="
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 8 rows and 83 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 83 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=6, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1p gain
D1V1, multiclass
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  CLUS_1           3                21
  CLUS_2           2                20
  CLUS_3           8                10
  CLUS_4           1                18
D1V2, multiclass
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  CLUS_1           1                25
  CLUS_2           6                21
  CLUS_3           7                23
D1V3, multiclass
D1V4, multiclass
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           8                23
  CLUS_3           6                37
D1V5, multiclass
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  CLUS_1           0                 6
  CLUS_2           4                33
  CLUS_3           2                10
  CLUS_4           7                20
D1V6, multiclass
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  CLUS_1           0                 2
  CLUS_2           7                30
  CLUS_3           6                37
D1V7, multiclass
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  CLUS_1           2                11
  CLUS_2           4                32
  CLUS_3           7                26
D1V8, multiclass
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           5                36
  CLUS_3           8                32

Clustering(2) Variable = 1q gain
D2V1, multiclass
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  CLUS_1           5                19
  CLUS_2           1                21
  CLUS_3           5                13
  CLUS_4           1                18
D2V2, multiclass
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  CLUS_1           2                24
  CLUS_2           3                24
  CLUS_3           7                23
D2V3, multiclass
D2V4, multiclass
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           8                23
  CLUS_3           4                39
D2V5, multiclass
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  CLUS_1           2                 4
  CLUS_2           2                35
  CLUS_3           1                11
  CLUS_4           6                21
D2V6, multiclass
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  CLUS_1           0                 2
  CLUS_2           8                29
  CLUS_3           3                40
D2V7, multiclass
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  CLUS_1           2                11
  CLUS_2           2                34
  CLUS_3           7                26
D2V8, multiclass
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           2                39
  CLUS_3           9                31

Clustering(3) Variable = 2p gain
D3V1, multiclass
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  CLUS_1           2                22
  CLUS_2           2                20
  CLUS_3           0                18
  CLUS_4           1                18
D3V2, multiclass
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  CLUS_1           0                26
  CLUS_2           4                23
  CLUS_3           1                29
D3V3, multiclass
D3V4, multiclass
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           1                30
  CLUS_3           3                40
D3V5, multiclass
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  CLUS_1           1                 5
  CLUS_2           3                34
  CLUS_3           0                12
  CLUS_4           1                26
D3V6, multiclass
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  CLUS_1           0                 2
  CLUS_2           1                36
  CLUS_3           4                39
D3V7, multiclass
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  CLUS_1           0                13
  CLUS_2           4                32
  CLUS_3           1                32
D3V8, multiclass
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           4                37
  CLUS_3           1                39

Clustering(4) Variable = 2q gain
D4V1, multiclass
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  CLUS_1           1                23
  CLUS_2           2                20
  CLUS_3           0                18
  CLUS_4           0                19
D4V2, multiclass
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  CLUS_1           0                26
  CLUS_2           3                24
  CLUS_3           0                30
D4V3, multiclass
[1] "Remove cluster labels:" "2Q GAIN CNV"           
clus
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
                2                73 
       TCGA-DX-A1KU        TCGA-DX-A1KY        TCGA-DX-A1KZ        TCGA-DX-A1L0 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A1L1        TCGA-DX-A1L2        TCGA-DX-A1L3        TCGA-DX-A23T 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z        TCGA-DX-A2IZ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A2J0        TCGA-DX-A2J1        TCGA-DX-A2J4        TCGA-DX-A3LS 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A3LT        TCGA-DX-A3LU        TCGA-DX-A3LW        TCGA-DX-A3LY 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A3M1        TCGA-DX-A3M2        TCGA-DX-A3U5        TCGA-DX-A3U6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS        TCGA-FX-A3NJ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FX-A3RE        TCGA-FX-A3TO        TCGA-HB-A2OT        TCGA-HB-A3L4 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-HS-A5N7        TCGA-HS-A5N8 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HS-A5N9        TCGA-HS-A5NA        TCGA-IE-A3OV        TCGA-IE-A4EH 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A3RQ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IF-A4AJ        TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IS-A3K8        TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IW-A3M6        TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-K1-A3PN 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-K1-A3PO        TCGA-K1-A42W        TCGA-K1-A42X        TCGA-KD-A5QS 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-KD-A5QT        TCGA-KD-A5QU        TCGA-KF-A41W        TCGA-MB-A5Y8 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-MB-A5Y9        TCGA-MB-A5YA        TCGA-MO-A47P        TCGA-PC-A5DK 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-PC-A5DL        TCGA-PC-A5DM        TCGA-PC-A5DN        TCGA-PC-A5DO 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-PC-A5DP 
"2Q GAIN WILD-TYPE" 
D4V4, multiclass
[1] "Remove cluster labels:" "2Q GAIN CNV"           
clus
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
                2                73 
       TCGA-DX-A1KU        TCGA-DX-A1KY        TCGA-DX-A1KZ        TCGA-DX-A1L0 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A1L1        TCGA-DX-A1L2        TCGA-DX-A1L3        TCGA-DX-A23T 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z        TCGA-DX-A2IZ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A2J0        TCGA-DX-A2J1        TCGA-DX-A2J4        TCGA-DX-A3LS 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A3LT        TCGA-DX-A3LU        TCGA-DX-A3LW        TCGA-DX-A3LY 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A3M1        TCGA-DX-A3M2        TCGA-DX-A3U5        TCGA-DX-A3U6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS        TCGA-FX-A3NJ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FX-A3RE        TCGA-FX-A3TO        TCGA-HB-A2OT        TCGA-HB-A3L4 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-HS-A5N7        TCGA-HS-A5N8 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HS-A5N9        TCGA-HS-A5NA        TCGA-IE-A3OV        TCGA-IE-A4EH 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A3RQ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IF-A4AJ        TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IS-A3K8        TCGA-IS-A3KA        TCGA-IW-A3M4        TCGA-IW-A3M5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IW-A3M6        TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-K1-A3PN 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-K1-A3PO        TCGA-K1-A42W        TCGA-K1-A42X        TCGA-KD-A5QS 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-KD-A5QT        TCGA-KD-A5QU        TCGA-KF-A41W        TCGA-MB-A5Y8 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-MB-A5Y9        TCGA-MB-A5YA        TCGA-MO-A47P        TCGA-PC-A5DK 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-PC-A5DL        TCGA-PC-A5DM        TCGA-PC-A5DN        TCGA-PC-A5DO 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-PC-A5DP 
"2Q GAIN WILD-TYPE" 
D4V5, multiclass
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  CLUS_1           1                 5
  CLUS_2           2                35
  CLUS_3           0                12
  CLUS_4           0                27
D4V6, multiclass
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  CLUS_1           0                 2
  CLUS_2           0                37
  CLUS_3           3                40
D4V7, multiclass
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  CLUS_1           0                13
  CLUS_2           3                33
  CLUS_3           0                33
D4V8, multiclass
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           3                38
  CLUS_3           0                40

Clustering(5) Variable = 3p gain
D5V1, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1           1                23
  CLUS_2           0                22
  CLUS_3           2                16
  CLUS_4           1                18
D5V2, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1           1                25
  CLUS_2           0                27
  CLUS_3           3                27
D5V3, multiclass
D5V4, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           3                28
  CLUS_3           1                42
D5V5, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1           0                 6
  CLUS_2           0                37
  CLUS_3           1                11
  CLUS_4           3                24
D5V6, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1           0                 2
  CLUS_2           4                33
  CLUS_3           0                43
D5V7, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1           1                12
  CLUS_2           0                36
  CLUS_3           3                30
D5V8, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           0                41
  CLUS_3           4                36

Clustering(6) Variable = 3q gain
D6V1, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1           1                23
  CLUS_2           0                22
  CLUS_3           2                16
  CLUS_4           1                18
D6V2, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1           1                25
  CLUS_2           0                27
  CLUS_3           3                27
D6V3, multiclass
D6V4, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           3                28
  CLUS_3           1                42
D6V5, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1           0                 6
  CLUS_2           0                37
  CLUS_3           1                11
  CLUS_4           3                24
D6V6, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1           0                 2
  CLUS_2           4                33
  CLUS_3           0                43
D6V7, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1           1                12
  CLUS_2           0                36
  CLUS_3           3                30
D6V8, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           0                41
  CLUS_3           4                36

Clustering(7) Variable = 4p gain
D7V1, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           2                22
  CLUS_2           1                21
  CLUS_3           3                15
  CLUS_4           2                17
D7V2, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           1                25
  CLUS_2           3                24
  CLUS_3           4                26
D7V3, multiclass
D7V4, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           4                27
  CLUS_3           3                40
D7V5, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           1                 5
  CLUS_2           3                34
  CLUS_3           1                11
  CLUS_4           3                24
D7V6, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           1                 1
  CLUS_2           4                33
  CLUS_3           3                40
D7V7, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           2                11
  CLUS_2           2                34
  CLUS_3           4                29
D7V8, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           3                38
  CLUS_3           5                35

Clustering(8) Variable = 4q gain
D8V1, multiclass
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  CLUS_1           0                24
  CLUS_2           1                21
  CLUS_3           2                16
  CLUS_4           1                18
D8V2, multiclass
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  CLUS_1           0                26
  CLUS_2           2                25
  CLUS_3           2                28
D8V3, multiclass
D8V4, multiclass
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           2                29
  CLUS_3           1                42
D8V5, multiclass
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  CLUS_1           0                 6
  CLUS_2           3                34
  CLUS_3           0                12
  CLUS_4           1                26
D8V6, multiclass
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  CLUS_1           1                 1
  CLUS_2           1                36
  CLUS_3           2                41
D8V7, multiclass
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  CLUS_1           0                13
  CLUS_2           2                34
  CLUS_3           2                31
D8V8, multiclass
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           2                39
  CLUS_3           2                38

Clustering(9) Variable = 5p gain
D9V1, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1          10                14
  CLUS_2           2                20
  CLUS_3           4                14
  CLUS_4           3                16
D9V2, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1           6                20
  CLUS_2           8                19
  CLUS_3           5                25
D9V3, multiclass
D9V4, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1           1                 0
  CLUS_2           5                26
  CLUS_3          11                32
D9V5, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1           3                 3
  CLUS_2           7                30
  CLUS_3           4                 8
  CLUS_4           5                22
D9V6, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1           0                 2
  CLUS_2           8                29
  CLUS_3          11                32
D9V7, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1           6                 7
  CLUS_2           8                28
  CLUS_3           5                28
D9V8, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1           1                 0
  CLUS_2           9                32
  CLUS_3           9                31

Clustering(10) Variable = 5q gain
D10V1, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1           7                17
  CLUS_2           2                20
  CLUS_3           4                14
  CLUS_4           1                18
D10V2, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1           4                22
  CLUS_2           8                19
  CLUS_3           2                28
D10V3, multiclass
D10V4, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1           1                 0
  CLUS_2           3                28
  CLUS_3           9                34
D10V5, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1           2                 4
  CLUS_2           6                31
  CLUS_3           4                 8
  CLUS_4           2                25
D10V6, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1           0                 2
  CLUS_2           5                32
  CLUS_3           9                34
D10V7, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1           4                 9
  CLUS_2           7                29
  CLUS_3           3                30
D10V8, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1           1                 0
  CLUS_2           8                33
  CLUS_3           5                35

Clustering(11) Variable = 6p gain
D11V1, multiclass
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  CLUS_1           5                19
  CLUS_2           4                18
  CLUS_3           1                17
  CLUS_4           1                18
D11V2, multiclass
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  CLUS_1           5                21
  CLUS_2           6                21
  CLUS_3           0                30
D11V3, multiclass
D11V4, multiclass
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           0                31
  CLUS_3           8                35
D11V5, multiclass
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  CLUS_1           2                 4
  CLUS_2           9                28
  CLUS_3           0                12
  CLUS_4           0                27
D11V6, multiclass
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  CLUS_1           0                 2
  CLUS_2           2                35
  CLUS_3           9                34
D11V7, multiclass
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  CLUS_1           3                10
  CLUS_2           8                28
  CLUS_3           0                33
D11V8, multiclass
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           9                32
  CLUS_3           2                38

Clustering(12) Variable = 6q gain
D12V1, multiclass
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  CLUS_1           3                21
  CLUS_2           6                16
  CLUS_3           1                17
  CLUS_4           2                17
D12V2, multiclass
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  CLUS_1           5                21
  CLUS_2           6                21
  CLUS_3           1                29
D12V3, multiclass
D12V4, multiclass
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           1                30
  CLUS_3           7                36
D12V5, multiclass
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  CLUS_1           1                 5
  CLUS_2          10                27
  CLUS_3           0                12
  CLUS_4           1                26
D12V6, multiclass
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  CLUS_1           0                 2
  CLUS_2           2                35
  CLUS_3          10                33
D12V7, multiclass
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  CLUS_1           2                11
  CLUS_2           9                27
  CLUS_3           1                32
D12V8, multiclass
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  CLUS_1           0                 1
  CLUS_2          10                31
  CLUS_3           2                38

Clustering(13) Variable = 7p gain
D13V1, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1          10                14
  CLUS_2           2                20
  CLUS_3           3                15
  CLUS_4           0                19
D13V2, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1           5                21
  CLUS_2           7                20
  CLUS_3           3                27
D13V3, multiclass
D13V4, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           5                26
  CLUS_3           8                35
D13V5, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1           3                 3
  CLUS_2           5                32
  CLUS_3           2                10
  CLUS_4           4                23
D13V6, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1           1                 1
  CLUS_2           6                31
  CLUS_3           7                36
D13V7, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1           3                10
  CLUS_2           6                30
  CLUS_3           5                28
D13V8, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           6                35
  CLUS_3           8                32

Clustering(14) Variable = 7q gain
D14V1, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1           8                16
  CLUS_2           2                20
  CLUS_3           3                15
  CLUS_4           0                19
D14V2, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1           4                22
  CLUS_2           7                20
  CLUS_3           2                28
D14V3, multiclass
D14V4, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           3                28
  CLUS_3           8                35
D14V5, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1           2                 4
  CLUS_2           6                31
  CLUS_3           2                10
  CLUS_4           3                24
D14V6, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1           1                 1
  CLUS_2           4                33
  CLUS_3           8                35
D14V7, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1           2                11
  CLUS_2           7                29
  CLUS_3           4                29
D14V8, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           7                34
  CLUS_3           6                34

Clustering(15) Variable = 8p gain
D15V1, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1           6                18
  CLUS_2           2                20
  CLUS_3           4                14
  CLUS_4           3                16
D15V2, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1           3                23
  CLUS_2           8                19
  CLUS_3           4                26
D15V3, multiclass
D15V4, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1           1                 0
  CLUS_2           5                26
  CLUS_3           8                35
D15V5, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1           3                 3
  CLUS_2           6                31
  CLUS_3           2                10
  CLUS_4           4                23
D15V6, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1           0                 2
  CLUS_2           8                29
  CLUS_3           7                36
D15V7, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1           3                10
  CLUS_2           7                29
  CLUS_3           5                28
D15V8, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1           1                 0
  CLUS_2           6                35
  CLUS_3           8                32

Clustering(16) Variable = 8q gain
D16V1, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1           6                18
  CLUS_2           2                20
  CLUS_3           5                13
  CLUS_4           4                15
D16V2, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1           1                25
  CLUS_2          10                17
  CLUS_3           6                24
D16V3, multiclass
D16V4, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1           1                 0
  CLUS_2           7                24
  CLUS_3           8                35
D16V5, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1           2                 4
  CLUS_2           7                30
  CLUS_3           1                11
  CLUS_4           6                21
D16V6, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1           0                 2
  CLUS_2           8                29
  CLUS_3           8                35
D16V7, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1           2                11
  CLUS_2           8                28
  CLUS_3           6                27
D16V8, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1           1                 0
  CLUS_2           7                34
  CLUS_3           8                32

Clustering(17) Variable = 9p gain
D17V1, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           0                24
  CLUS_2           3                19
  CLUS_3           4                14
  CLUS_4           0                19
D17V2, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           2                24
  CLUS_2           3                24
  CLUS_3           2                28
D17V3, multiclass
D17V4, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           2                29
  CLUS_3           4                39
D17V5, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           1                 5
  CLUS_2           3                34
  CLUS_3           2                10
  CLUS_4           1                26
D17V6, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           0                 2
  CLUS_2           2                35
  CLUS_3           5                38
D17V7, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           2                11
  CLUS_2           3                33
  CLUS_3           2                31
D17V8, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           5                36
  CLUS_3           2                38

Clustering(18) Variable = 9q gain
D18V1, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1           2                22
  CLUS_2           4                18
  CLUS_3           4                14
  CLUS_4           0                19
D18V2, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1           2                24
  CLUS_2           5                22
  CLUS_3           3                27
D18V3, multiclass
D18V4, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           3                28
  CLUS_3           6                37
D18V5, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1           1                 5
  CLUS_2           5                32
  CLUS_3           2                10
  CLUS_4           2                25
D18V6, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1           0                 2
  CLUS_2           3                34
  CLUS_3           7                36
D18V7, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1           2                11
  CLUS_2           5                31
  CLUS_3           3                30
D18V8, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           7                34
  CLUS_3           3                37

Clustering(19) Variable = 11p gain
D19V1, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            2                 22
  CLUS_2            0                 22
  CLUS_3            1                 17
  CLUS_4            0                 19
D19V2, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            1                 25
  CLUS_2            2                 25
  CLUS_3            0                 30
D19V3, multiclass
D19V4, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            1                 30
  CLUS_3            2                 41
D19V5, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            2                  4
  CLUS_2            0                 37
  CLUS_3            1                 11
  CLUS_4            0                 27
D19V6, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            0                  2
  CLUS_2            3                 34
  CLUS_3            0                 43
D19V7, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            2                 11
  CLUS_2            0                 36
  CLUS_3            1                 32
D19V8, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            0                 41
  CLUS_3            3                 37

Clustering(20) Variable = 11q gain
D20V1, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1            1                 23
  CLUS_2            0                 22
  CLUS_3            0                 18
  CLUS_4            2                 17
D20V2, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1            0                 26
  CLUS_2            1                 26
  CLUS_3            2                 28
D20V3, multiclass
D20V4, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            2                 29
  CLUS_3            1                 42
D20V5, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1            1                  5
  CLUS_2            0                 37
  CLUS_3            0                 12
  CLUS_4            2                 25
D20V6, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1            0                  2
  CLUS_2            3                 34
  CLUS_3            0                 43
D20V7, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1            1                 12
  CLUS_2            0                 36
  CLUS_3            2                 31
D20V8, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            0                 41
  CLUS_3            3                 37

Clustering(21) Variable = 12p gain
D21V1, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1            6                 18
  CLUS_2            1                 21
  CLUS_3            0                 18
  CLUS_4            3                 16
D21V2, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1            3                 23
  CLUS_2            4                 23
  CLUS_3            3                 27
D21V3, multiclass
D21V4, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            3                 28
  CLUS_3            6                 37
D21V5, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1            4                  2
  CLUS_2            3                 34
  CLUS_3            0                 12
  CLUS_4            3                 24
D21V6, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1            0                  2
  CLUS_2            6                 31
  CLUS_3            4                 39
D21V7, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1            4                  9
  CLUS_2            3                 33
  CLUS_3            3                 30
D21V8, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            4                 37
  CLUS_3            6                 34

Clustering(22) Variable = 12q gain
D22V1, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1            2                 22
  CLUS_2            1                 21
  CLUS_3            1                 17
  CLUS_4            1                 18
D22V2, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1            0                 26
  CLUS_2            4                 23
  CLUS_3            1                 29
D22V3, multiclass
D22V4, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            2                 29
  CLUS_3            2                 41
D22V5, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1            2                  4
  CLUS_2            1                 36
  CLUS_3            0                 12
  CLUS_4            1                 26
D22V6, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1            0                  2
  CLUS_2            2                 35
  CLUS_3            2                 41
D22V7, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1            1                 12
  CLUS_2            2                 34
  CLUS_3            1                 32
D22V8, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            2                 39
  CLUS_3            2                 38

Clustering(23) Variable = 14q gain
D23V1, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1            1                 23
  CLUS_2            2                 20
  CLUS_3            0                 18
  CLUS_4            1                 18
D23V2, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1            1                 25
  CLUS_2            2                 25
  CLUS_3            1                 29
D23V3, multiclass
[1] "Remove cluster labels:" "14Q GAIN CNV"          
clus
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
                 2                 73 
        TCGA-DX-A1KU         TCGA-DX-A1KY         TCGA-DX-A1KZ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A1L0         TCGA-DX-A1L1         TCGA-DX-A1L2 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A1L3         TCGA-DX-A23R         TCGA-DX-A23T 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A23V         TCGA-DX-A23Y         TCGA-DX-A23Z 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A2IZ         TCGA-DX-A2J0         TCGA-DX-A2J1 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A2J4         TCGA-DX-A3LS         TCGA-DX-A3LT 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A3LU         TCGA-DX-A3LW         TCGA-DX-A3LY 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A3M1         TCGA-DX-A3M2         TCGA-DX-A3U5 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A3U6         TCGA-DX-A3U7         TCGA-DX-A3U8 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FX-A2QS         TCGA-FX-A3NJ         TCGA-FX-A3RE 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FX-A3TO         TCGA-HB-A2OT         TCGA-HB-A3L4 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HB-A43Z         TCGA-HB-A5W3         TCGA-HS-A5N7 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HS-A5N8         TCGA-HS-A5N9         TCGA-HS-A5NA 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IE-A3OV         TCGA-IE-A4EH         TCGA-IE-A4EI 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IE-A4EJ         TCGA-IE-A4EK         TCGA-IF-A3RQ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IF-A4AK         TCGA-IS-A3K6         TCGA-IS-A3K7 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IS-A3K8         TCGA-IS-A3KA         TCGA-IW-A3M4 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-K1-A3PN         TCGA-K1-A3PO         TCGA-K1-A42W 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-K1-A42X         TCGA-KD-A5QS         TCGA-KD-A5QT 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-KD-A5QU         TCGA-KF-A41W         TCGA-MB-A5Y8 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-MB-A5Y9         TCGA-MB-A5YA         TCGA-MO-A47P 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-MO-A47R         TCGA-PC-A5DK         TCGA-PC-A5DL 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-PC-A5DM         TCGA-PC-A5DN         TCGA-PC-A5DO 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-PC-A5DP 
"14Q GAIN WILD-TYPE" 
D23V4, multiclass
[1] "Remove cluster labels:" "14Q GAIN CNV"          
clus
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
                 2                 73 
        TCGA-DX-A1KU         TCGA-DX-A1KY         TCGA-DX-A1KZ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A1L0         TCGA-DX-A1L1         TCGA-DX-A1L2 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A1L3         TCGA-DX-A23R         TCGA-DX-A23T 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A23V         TCGA-DX-A23Y         TCGA-DX-A23Z 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A2IZ         TCGA-DX-A2J0         TCGA-DX-A2J1 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A2J4         TCGA-DX-A3LS         TCGA-DX-A3LT 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A3LU         TCGA-DX-A3LW         TCGA-DX-A3LY 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A3M1         TCGA-DX-A3M2         TCGA-DX-A3U5 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DX-A3U6         TCGA-DX-A3U7         TCGA-DX-A3U8 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FX-A2QS         TCGA-FX-A3NJ         TCGA-FX-A3RE 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FX-A3TO         TCGA-HB-A2OT         TCGA-HB-A3L4 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HB-A43Z         TCGA-HB-A5W3         TCGA-HS-A5N7 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HS-A5N8         TCGA-HS-A5N9         TCGA-HS-A5NA 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IE-A3OV         TCGA-IE-A4EH         TCGA-IE-A4EI 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IE-A4EJ         TCGA-IE-A4EK         TCGA-IF-A3RQ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IF-A4AK         TCGA-IS-A3K6         TCGA-IS-A3K7 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IS-A3K8         TCGA-IS-A3KA         TCGA-IW-A3M4 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-K1-A3PN         TCGA-K1-A3PO         TCGA-K1-A42W 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-K1-A42X         TCGA-KD-A5QS         TCGA-KD-A5QT 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-KD-A5QU         TCGA-KF-A41W         TCGA-MB-A5Y8 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-MB-A5Y9         TCGA-MB-A5YA         TCGA-MO-A47P 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-MO-A47R         TCGA-PC-A5DK         TCGA-PC-A5DL 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-PC-A5DM         TCGA-PC-A5DN         TCGA-PC-A5DO 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-PC-A5DP 
"14Q GAIN WILD-TYPE" 
D23V5, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1            0                  6
  CLUS_2            3                 34
  CLUS_3            0                 12
  CLUS_4            1                 26
D23V6, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1            0                  2
  CLUS_2            1                 36
  CLUS_3            3                 40
D23V7, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1            0                 13
  CLUS_2            3                 33
  CLUS_3            1                 32
D23V8, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            3                 38
  CLUS_3            1                 39

Clustering(24) Variable = 15q gain
D24V1, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1            4                 20
  CLUS_2            2                 20
  CLUS_3            4                 14
  CLUS_4            3                 16
D24V2, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1            3                 23
  CLUS_2            4                 23
  CLUS_3            6                 24
D24V3, multiclass
D24V4, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            8                 23
  CLUS_3            3                 40
D24V5, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1            1                  5
  CLUS_2            3                 34
  CLUS_3            2                 10
  CLUS_4            6                 21
D24V6, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1            0                  2
  CLUS_2            8                 29
  CLUS_3            4                 39
D24V7, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1            2                 11
  CLUS_2            3                 33
  CLUS_3            7                 26
D24V8, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            4                 37
  CLUS_3            8                 32

Clustering(25) Variable = 16p gain
D25V1, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            2                 22
  CLUS_2            2                 20
  CLUS_3            2                 16
  CLUS_4            2                 17
D25V2, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            1                 25
  CLUS_2            4                 23
  CLUS_3            3                 27
D25V3, multiclass
D25V4, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            4                 27
  CLUS_3            3                 40
D25V5, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            1                  5
  CLUS_2            2                 35
  CLUS_3            2                 10
  CLUS_4            3                 24
D25V6, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            0                  2
  CLUS_2            5                 32
  CLUS_3            3                 40
D25V7, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            1                 12
  CLUS_2            3                 33
  CLUS_3            4                 29
D25V8, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            3                 38
  CLUS_3            5                 35

Clustering(26) Variable = 16q gain
D26V1, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            0                 24
  CLUS_2            2                 20
  CLUS_3            1                 17
  CLUS_4            0                 19
D26V2, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            1                 25
  CLUS_2            1                 26
  CLUS_3            1                 29
D26V3, multiclass
[1] "Remove cluster labels:" "16Q GAIN CNV"          
clus
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                 2                 73 
        TCGA-DX-A1KU         TCGA-DX-A1KY         TCGA-DX-A1KZ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A1L0         TCGA-DX-A1L1         TCGA-DX-A1L2 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A1L3         TCGA-DX-A23R         TCGA-DX-A23T 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A23V         TCGA-DX-A23Y         TCGA-DX-A23Z 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A2IZ         TCGA-DX-A2J0         TCGA-DX-A2J1 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A2J4         TCGA-DX-A3LS         TCGA-DX-A3LT 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A3LU         TCGA-DX-A3LW         TCGA-DX-A3LY 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A3M1         TCGA-DX-A3M2         TCGA-DX-A3U6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A3U7         TCGA-DX-A3U8         TCGA-FX-A2QS 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FX-A3NJ         TCGA-FX-A3RE         TCGA-FX-A3TO 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HB-A2OT         TCGA-HB-A3L4         TCGA-HB-A43Z 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HB-A5W3         TCGA-HS-A5N7         TCGA-HS-A5N8 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HS-A5N9         TCGA-HS-A5NA         TCGA-IE-A4EH 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IE-A4EI         TCGA-IE-A4EJ         TCGA-IE-A4EK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IF-A3RQ         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-K1-A3PN         TCGA-K1-A3PO         TCGA-K1-A42W 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-K1-A42X         TCGA-KD-A5QS         TCGA-KD-A5QT 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-KD-A5QU         TCGA-KF-A41W         TCGA-MB-A5Y8 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-MB-A5Y9         TCGA-MB-A5YA         TCGA-MO-A47P 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-MO-A47R         TCGA-PC-A5DK         TCGA-PC-A5DL 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-PC-A5DM         TCGA-PC-A5DN         TCGA-PC-A5DO 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-PC-A5DP 
"16Q GAIN WILD-TYPE" 
D26V4, multiclass
[1] "Remove cluster labels:" "16Q GAIN CNV"          
clus
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                 2                 73 
        TCGA-DX-A1KU         TCGA-DX-A1KY         TCGA-DX-A1KZ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A1L0         TCGA-DX-A1L1         TCGA-DX-A1L2 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A1L3         TCGA-DX-A23R         TCGA-DX-A23T 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A23V         TCGA-DX-A23Y         TCGA-DX-A23Z 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A2IZ         TCGA-DX-A2J0         TCGA-DX-A2J1 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A2J4         TCGA-DX-A3LS         TCGA-DX-A3LT 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A3LU         TCGA-DX-A3LW         TCGA-DX-A3LY 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A3M1         TCGA-DX-A3M2         TCGA-DX-A3U6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DX-A3U7         TCGA-DX-A3U8         TCGA-FX-A2QS 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FX-A3NJ         TCGA-FX-A3RE         TCGA-FX-A3TO 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HB-A2OT         TCGA-HB-A3L4         TCGA-HB-A43Z 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HB-A5W3         TCGA-HS-A5N7         TCGA-HS-A5N8 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HS-A5N9         TCGA-HS-A5NA         TCGA-IE-A4EH 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IE-A4EI         TCGA-IE-A4EJ         TCGA-IE-A4EK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IF-A3RQ         TCGA-IF-A4AJ         TCGA-IF-A4AK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IS-A3K6         TCGA-IS-A3K7         TCGA-IS-A3K8 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IS-A3KA         TCGA-IW-A3M4         TCGA-IW-A3M5 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IW-A3M6         TCGA-JV-A5VE         TCGA-JV-A5VF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-K1-A3PN         TCGA-K1-A3PO         TCGA-K1-A42W 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-K1-A42X         TCGA-KD-A5QS         TCGA-KD-A5QT 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-KD-A5QU         TCGA-KF-A41W         TCGA-MB-A5Y8 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-MB-A5Y9         TCGA-MB-A5YA         TCGA-MO-A47P 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-MO-A47R         TCGA-PC-A5DK         TCGA-PC-A5DL 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-PC-A5DM         TCGA-PC-A5DN         TCGA-PC-A5DO 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-PC-A5DP 
"16Q GAIN WILD-TYPE" 
D26V5, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            0                  6
  CLUS_2            1                 36
  CLUS_3            1                 11
  CLUS_4            1                 26
D26V6, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            0                  2
  CLUS_2            2                 35
  CLUS_3            1                 42
D26V7, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            1                 12
  CLUS_2            1                 35
  CLUS_3            1                 32
D26V8, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            1                 40
  CLUS_3            2                 38

Clustering(27) Variable = 17p gain
D27V1, multiclass
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  CLUS_1            5                 19
  CLUS_2            3                 19
  CLUS_3            1                 17
  CLUS_4            1                 18
D27V2, multiclass
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  CLUS_1            1                 25
  CLUS_2            8                 19
  CLUS_3            1                 29
D27V3, multiclass
D27V4, multiclass
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            1                 30
  CLUS_3            7                 36
D27V5, multiclass
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  CLUS_1            2                  4
  CLUS_2            4                 33
  CLUS_3            2                 10
  CLUS_4            2                 25
D27V6, multiclass
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  CLUS_1            1                  1
  CLUS_2            2                 35
  CLUS_3            7                 36
D27V7, multiclass
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  CLUS_1            3                 10
  CLUS_2            5                 31
  CLUS_3            2                 31
D27V8, multiclass
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            7                 34
  CLUS_3            3                 37

Clustering(28) Variable = 17q gain
D28V1, multiclass
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  CLUS_1            3                 21
  CLUS_2            2                 20
  CLUS_3            1                 17
  CLUS_4            2                 17
D28V2, multiclass
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  CLUS_1            1                 25
  CLUS_2            5                 22
  CLUS_3            2                 28
D28V3, multiclass
D28V4, multiclass
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            2                 29
  CLUS_3            5                 38
D28V5, multiclass
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  CLUS_1            1                  5
  CLUS_2            3                 34
  CLUS_3            1                 11
  CLUS_4            3                 24
D28V6, multiclass
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  CLUS_1            1                  1
  CLUS_2            2                 35
  CLUS_3            5                 38
D28V7, multiclass
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  CLUS_1            1                 12
  CLUS_2            4                 32
  CLUS_3            3                 30
D28V8, multiclass
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            5                 36
  CLUS_3            3                 37

Clustering(29) Variable = 18p gain
D29V1, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1            3                 21
  CLUS_2            2                 20
  CLUS_3            7                 11
  CLUS_4            0                 19
D29V2, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1            1                 25
  CLUS_2            7                 20
  CLUS_3            4                 26
D29V3, multiclass
D29V4, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1            1                  0
  CLUS_2            5                 26
  CLUS_3            5                 38
D29V5, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1            1                  5
  CLUS_2            6                 31
  CLUS_3            2                 10
  CLUS_4            3                 24
D29V6, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1            1                  1
  CLUS_2            4                 33
  CLUS_3            7                 36
D29V7, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1            1                 12
  CLUS_2            6                 30
  CLUS_3            5                 28
D29V8, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1            1                  0
  CLUS_2            6                 35
  CLUS_3            5                 35

Clustering(30) Variable = 18q gain
D30V1, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1            5                 19
  CLUS_2            0                 22
  CLUS_3            5                 13
  CLUS_4            0                 19
D30V2, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1            2                 24
  CLUS_2            4                 23
  CLUS_3            4                 26
D30V3, multiclass
D30V4, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            5                 26
  CLUS_3            5                 38
D30V5, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1            1                  5
  CLUS_2            5                 32
  CLUS_3            1                 11
  CLUS_4            3                 24
D30V6, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1            1                  1
  CLUS_2            4                 33
  CLUS_3            5                 38
D30V7, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1            0                 13
  CLUS_2            5                 31
  CLUS_3            5                 28
D30V8, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            5                 36
  CLUS_3            5                 35

Clustering(31) Variable = 19p gain
D31V1, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1            9                 15
  CLUS_2            2                 20
  CLUS_3            4                 14
  CLUS_4            1                 18
D31V2, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1            2                 24
  CLUS_2            8                 19
  CLUS_3            6                 24
D31V3, multiclass
D31V4, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            6                 25
  CLUS_3            8                 35
D31V5, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1            3                  3
  CLUS_2            5                 32
  CLUS_3            1                 11
  CLUS_4            7                 20
D31V6, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1            1                  1
  CLUS_2            9                 28
  CLUS_3            6                 37
D31V7, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1            4                  9
  CLUS_2            5                 31
  CLUS_3            7                 26
D31V8, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            6                 35
  CLUS_3           10                 30

Clustering(32) Variable = 19q gain
D32V1, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1            6                 18
  CLUS_2            2                 20
  CLUS_3            2                 16
  CLUS_4            1                 18
D32V2, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1            2                 24
  CLUS_2            7                 20
  CLUS_3            2                 28
D32V3, multiclass
D32V4, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            2                 29
  CLUS_3            7                 36
D32V5, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1            3                  3
  CLUS_2            5                 32
  CLUS_3            1                 11
  CLUS_4            2                 25
D32V6, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1            0                  2
  CLUS_2            5                 32
  CLUS_3            6                 37
D32V7, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1            4                  9
  CLUS_2            5                 31
  CLUS_3            2                 31
D32V8, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            6                 35
  CLUS_3            5                 35

Clustering(33) Variable = 20p gain
D33V1, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1            6                 18
  CLUS_2            3                 19
  CLUS_3            8                 10
  CLUS_4            2                 17
D33V2, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1            2                 24
  CLUS_2           11                 16
  CLUS_3            6                 24
D33V3, multiclass
D33V4, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1            1                  0
  CLUS_2            8                 23
  CLUS_3            8                 35
D33V5, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1            1                  5
  CLUS_2            8                 29
  CLUS_3            3                  9
  CLUS_4            6                 21
D33V6, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1            0                  2
  CLUS_2            8                 29
  CLUS_3           10                 33
D33V7, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1            3                 10
  CLUS_2            8                 28
  CLUS_3            7                 26
D33V8, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1            1                  0
  CLUS_2            9                 32
  CLUS_3            8                 32

Clustering(34) Variable = 20q gain
D34V1, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1            8                 16
  CLUS_2            5                 17
  CLUS_3            7                 11
  CLUS_4            2                 17
D34V2, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1            4                 22
  CLUS_2           13                 14
  CLUS_3            5                 25
D34V3, multiclass
D34V4, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1            1                  0
  CLUS_2            6                 25
  CLUS_3           12                 31
D34V5, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1            3                  3
  CLUS_2           11                 26
  CLUS_3            3                  9
  CLUS_4            5                 22
D34V6, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1            0                  2
  CLUS_2            9                 28
  CLUS_3           13                 30
D34V7, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1            6                  7
  CLUS_2           10                 26
  CLUS_3            6                 27
D34V8, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1            1                  0
  CLUS_2           12                 29
  CLUS_3            9                 31

Clustering(35) Variable = 21q gain
D35V1, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            5                 19
  CLUS_2            3                 19
  CLUS_3            6                 12
  CLUS_4            1                 18
D35V2, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            1                 25
  CLUS_2           11                 16
  CLUS_3            3                 27
D35V3, multiclass
D35V4, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            1                  0
  CLUS_2            4                 27
  CLUS_3            8                 35
D35V5, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            3                  3
  CLUS_2            7                 30
  CLUS_3            1                 11
  CLUS_4            3                 24
D35V6, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            0                  2
  CLUS_2            6                 31
  CLUS_3            8                 35
D35V7, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            4                  9
  CLUS_2            7                 29
  CLUS_3            3                 30
D35V8, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            1                  0
  CLUS_2            7                 34
  CLUS_3            6                 34

Clustering(36) Variable = 22q gain
D36V1, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1            4                 20
  CLUS_2            0                 22
  CLUS_3            4                 14
  CLUS_4            1                 18
D36V2, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1            2                 24
  CLUS_2            3                 24
  CLUS_3            4                 26
D36V3, multiclass
D36V4, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            5                 26
  CLUS_3            4                 39
D36V5, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1            2                  4
  CLUS_2            1                 36
  CLUS_3            1                 11
  CLUS_4            4                 23
D36V6, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1            0                  2
  CLUS_2            6                 31
  CLUS_3            2                 41
D36V7, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1            3                 10
  CLUS_2            1                 35
  CLUS_3            4                 29
D36V8, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            1                 40
  CLUS_3            7                 33

Clustering(37) Variable = Xq gain
D37V1, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           0                24
  CLUS_2           1                21
  CLUS_3           2                16
  CLUS_4           0                19
D37V2, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           1                25
  CLUS_2           1                26
  CLUS_3           1                29
D37V3, multiclass
[1] "Remove cluster labels:" "XQ GAIN CNV"           
clus
      XQ GAIN CNV XQ GAIN WILD-TYPE 
                2                73 
       TCGA-DX-A1KU        TCGA-DX-A1KY        TCGA-DX-A1KZ        TCGA-DX-A1L0 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A1L1        TCGA-DX-A1L2        TCGA-DX-A1L3        TCGA-DX-A23R 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A23T        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1        TCGA-DX-A2J4 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU        TCGA-DX-A3LW 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3M2        TCGA-DX-A3U5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A3TO        TCGA-HB-A2OT 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HB-A3L4        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-HS-A5N7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HS-A5N8        TCGA-HS-A5N9        TCGA-HS-A5NA        TCGA-IE-A4EH 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A3RQ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IF-A4AJ        TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IS-A3K8        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-K1-A3PN        TCGA-K1-A3PO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-K1-A42W        TCGA-K1-A42X        TCGA-KD-A5QS        TCGA-KD-A5QT 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-KD-A5QU        TCGA-KF-A41W        TCGA-MB-A5Y8        TCGA-MB-A5Y9 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MB-A5YA        TCGA-MO-A47P        TCGA-MO-A47R        TCGA-PC-A5DK 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-PC-A5DL        TCGA-PC-A5DM        TCGA-PC-A5DN        TCGA-PC-A5DO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-PC-A5DP 
"XQ GAIN WILD-TYPE" 
D37V4, multiclass
[1] "Remove cluster labels:" "XQ GAIN CNV"           
clus
      XQ GAIN CNV XQ GAIN WILD-TYPE 
                2                73 
       TCGA-DX-A1KU        TCGA-DX-A1KY        TCGA-DX-A1KZ        TCGA-DX-A1L0 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A1L1        TCGA-DX-A1L2        TCGA-DX-A1L3        TCGA-DX-A23R 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A23T        TCGA-DX-A23V        TCGA-DX-A23Y        TCGA-DX-A23Z 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A2IZ        TCGA-DX-A2J0        TCGA-DX-A2J1        TCGA-DX-A2J4 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A3LS        TCGA-DX-A3LT        TCGA-DX-A3LU        TCGA-DX-A3LW 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A3LY        TCGA-DX-A3M1        TCGA-DX-A3M2        TCGA-DX-A3U5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DX-A3U6        TCGA-DX-A3U7        TCGA-DX-A3U8        TCGA-FX-A2QS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FX-A3NJ        TCGA-FX-A3RE        TCGA-FX-A3TO        TCGA-HB-A2OT 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HB-A3L4        TCGA-HB-A43Z        TCGA-HB-A5W3        TCGA-HS-A5N7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HS-A5N8        TCGA-HS-A5N9        TCGA-HS-A5NA        TCGA-IE-A4EH 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IE-A4EI        TCGA-IE-A4EJ        TCGA-IE-A4EK        TCGA-IF-A3RQ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IF-A4AJ        TCGA-IF-A4AK        TCGA-IS-A3K6        TCGA-IS-A3K7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IS-A3K8        TCGA-IW-A3M4        TCGA-IW-A3M5        TCGA-IW-A3M6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-JV-A5VE        TCGA-JV-A5VF        TCGA-K1-A3PN        TCGA-K1-A3PO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-K1-A42W        TCGA-K1-A42X        TCGA-KD-A5QS        TCGA-KD-A5QT 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-KD-A5QU        TCGA-KF-A41W        TCGA-MB-A5Y8        TCGA-MB-A5Y9 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MB-A5YA        TCGA-MO-A47P        TCGA-MO-A47R        TCGA-PC-A5DK 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-PC-A5DL        TCGA-PC-A5DM        TCGA-PC-A5DN        TCGA-PC-A5DO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-PC-A5DP 
"XQ GAIN WILD-TYPE" 
D37V5, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           0                 6
  CLUS_2           1                36
  CLUS_3           1                11
  CLUS_4           1                26
D37V6, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           0                 2
  CLUS_2           2                35
  CLUS_3           1                42
D37V7, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           0                13
  CLUS_2           1                35
  CLUS_3           2                31
D37V8, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           1                40
  CLUS_3           2                38

Clustering(38) Variable = 1p loss
D38V1, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1           6                18
  CLUS_2           0                22
  CLUS_3           1                17
  CLUS_4           2                17
D38V2, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1           1                25
  CLUS_2           3                24
  CLUS_3           5                25
D38V3, multiclass
D38V4, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           4                27
  CLUS_3           4                39
D38V5, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1           1                 5
  CLUS_2           2                35
  CLUS_3           1                11
  CLUS_4           5                22
D38V6, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1           1                 1
  CLUS_2           5                32
  CLUS_3           3                40
D38V7, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1           0                13
  CLUS_2           3                33
  CLUS_3           6                27
D38V8, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           3                38
  CLUS_3           6                34

Clustering(39) Variable = 1q loss
D39V1, multiclass
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1           3                21
  CLUS_2           1                21
  CLUS_3           2                16
  CLUS_4           1                18
D39V2, multiclass
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1           1                25
  CLUS_2           2                25
  CLUS_3           4                26
D39V3, multiclass
D39V4, multiclass
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           3                28
  CLUS_3           3                40
D39V5, multiclass
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1           0                 6
  CLUS_2           3                34
  CLUS_3           0                12
  CLUS_4           4                23
D39V6, multiclass
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1           0                 2
  CLUS_2           4                33
  CLUS_3           3                40
D39V7, multiclass
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1           0                13
  CLUS_2           3                33
  CLUS_3           4                29
D39V8, multiclass
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           3                38
  CLUS_3           4                36

Clustering(40) Variable = 2p loss
D40V1, multiclass
        clus
vv       2P LOSS CNV 2P LOSS WILD-TYPE
  CLUS_1           3                21
  CLUS_2           2                20
  CLUS_3           9                 9
  CLUS_4           2                17
D40V2, multiclass
        clus
vv       2P LOSS CNV 2P LOSS WILD-TYPE
  CLUS_1           1                25
  CLUS_2           4                23
  CLUS_3          11                19
D40V3, multiclass
D40V4, multiclass
        clus
vv       2P LOSS CNV 2P LOSS WILD-TYPE
  CLUS_1           0                 1
  CLUS_2          11                20
  CLUS_3           5                38
D40V5, multiclass
        clus
vv       2P LOSS CNV 2P LOSS WILD-TYPE
  CLUS_1           1                 5
  CLUS_2           6                31
  CLUS_3           0                12
  CLUS_4           9                18
D40V6, multiclass
        clus
vv       2P LOSS CNV 2P LOSS WILD-TYPE
  CLUS_1           1                 1
  CLUS_2          10                27
  CLUS_3           5                38
D40V7, multiclass
        clus
vv       2P LOSS CNV 2P LOSS WILD-TYPE
  CLUS_1           0                13
  CLUS_2           5                31
  CLUS_3          11                22
D40V8, multiclass
        clus
vv       2P LOSS CNV 2P LOSS WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           5                36
  CLUS_3          11                29

Clustering(41) Variable = 2q loss
D41V1, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           3                21
  CLUS_2           2                20
  CLUS_3          10                 8
  CLUS_4           1                18
D41V2, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           1                25
  CLUS_2           8                19
  CLUS_3           7                23
D41V3, multiclass
D41V4, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           1                 0
  CLUS_2           7                24
  CLUS_3           8                35
D41V5, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           1                 5
  CLUS_2           9                28
  CLUS_3           0                12
  CLUS_4           6                21
D41V6, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           1                 1
  CLUS_2           7                30
  CLUS_3           8                35
D41V7, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           1                12
  CLUS_2           8                28
  CLUS_3           7                26
D41V8, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           1                 0
  CLUS_2           7                34
  CLUS_3           8                32

Clustering(42) Variable = 3p loss
D42V1, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1           5                19
  CLUS_2           5                17
  CLUS_3           3                15
  CLUS_4           0                19
D42V2, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1           4                22
  CLUS_2           7                20
  CLUS_3           2                28
D42V3, multiclass
D42V4, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           2                29
  CLUS_3           8                35
D42V5, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1           2                 4
  CLUS_2           9                28
  CLUS_3           0                12
  CLUS_4           2                25
D42V6, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1           0                 2
  CLUS_2           4                33
  CLUS_3           9                34
D42V7, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1           2                11
  CLUS_2           9                27
  CLUS_3           2                31
D42V8, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           9                32
  CLUS_3           4                36

Clustering(43) Variable = 3q loss
D43V1, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1           5                19
  CLUS_2           6                16
  CLUS_3           4                14
  CLUS_4           0                19
D43V2, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1           2                24
  CLUS_2          10                17
  CLUS_3           3                27
D43V3, multiclass
D43V4, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           3                28
  CLUS_3           9                34
D43V5, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1           1                 5
  CLUS_2          11                26
  CLUS_3           0                12
  CLUS_4           3                24
D43V6, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1           0                 2
  CLUS_2           3                34
  CLUS_3          12                31
D43V7, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1           0                13
  CLUS_2          12                24
  CLUS_3           3                30
D43V8, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1           0                 1
  CLUS_2          12                29
  CLUS_3           3                37

Clustering(44) Variable = 4p loss
D44V1, multiclass
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  CLUS_1           5                19
  CLUS_2           1                21
  CLUS_3           4                14
  CLUS_4           0                19
D44V2, multiclass
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  CLUS_1           0                26
  CLUS_2           4                23
  CLUS_3           6                24
D44V3, multiclass
D44V4, multiclass
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           6                25
  CLUS_3           4                39
D44V5, multiclass
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  CLUS_1           1                 5
  CLUS_2           3                34
  CLUS_3           1                11
  CLUS_4           5                22
D44V6, multiclass
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  CLUS_1           0                 2
  CLUS_2           6                31
  CLUS_3           4                39
D44V7, multiclass
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  CLUS_1           0                13
  CLUS_2           4                32
  CLUS_3           6                27
D44V8, multiclass
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           4                37
  CLUS_3           6                34

Clustering(45) Variable = 4q loss
D45V1, multiclass
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  CLUS_1           4                20
  CLUS_2           2                20
  CLUS_3           3                15
  CLUS_4           1                18
D45V2, multiclass
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  CLUS_1           0                26
  CLUS_2           5                22
  CLUS_3           5                25
D45V3, multiclass
D45V4, multiclass
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           5                26
  CLUS_3           5                38
D45V5, multiclass
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  CLUS_1           1                 5
  CLUS_2           4                33
  CLUS_3           1                11
  CLUS_4           4                23
D45V6, multiclass
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  CLUS_1           0                 2
  CLUS_2           5                32
  CLUS_3           5                38
D45V7, multiclass
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  CLUS_1           0                13
  CLUS_2           5                31
  CLUS_3           5                28
D45V8, multiclass
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           5                36
  CLUS_3           5                35

Clustering(46) Variable = 5p loss
D46V1, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           2                22
  CLUS_2           2                20
  CLUS_3           2                16
  CLUS_4           0                19
D46V2, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           1                25
  CLUS_2           2                25
  CLUS_3           3                27
D46V3, multiclass
D46V4, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           3                28
  CLUS_3           2                41
D46V5, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           0                 6
  CLUS_2           3                34
  CLUS_3           0                12
  CLUS_4           3                24
D46V6, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           0                 2
  CLUS_2           3                34
  CLUS_3           3                40
D46V7, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           0                13
  CLUS_2           3                33
  CLUS_3           3                30
D46V8, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           3                38
  CLUS_3           3                37

Clustering(47) Variable = 5q loss
D47V1, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1           2                22
  CLUS_2           2                20
  CLUS_3           1                17
  CLUS_4           1                18
D47V2, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1           0                26
  CLUS_2           3                24
  CLUS_3           3                27
D47V3, multiclass
D47V4, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           3                28
  CLUS_3           2                41
D47V5, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1           0                 6
  CLUS_2           3                34
  CLUS_3           0                12
  CLUS_4           3                24
D47V6, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1           0                 2
  CLUS_2           3                34
  CLUS_3           3                40
D47V7, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1           0                13
  CLUS_2           3                33
  CLUS_3           3                30
D47V8, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           3                38
  CLUS_3           3                37

Clustering(48) Variable = 6p loss
D48V1, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1           3                21
  CLUS_2           3                19
  CLUS_3           4                14
  CLUS_4           2                17
D48V2, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1           2                24
  CLUS_2           3                24
  CLUS_3           7                23
D48V3, multiclass
D48V4, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           6                25
  CLUS_3           5                38
D48V5, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1           0                 6
  CLUS_2           3                34
  CLUS_3           2                10
  CLUS_4           7                20
D48V6, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1           0                 2
  CLUS_2           8                29
  CLUS_3           4                39
D48V7, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1           1                12
  CLUS_2           3                33
  CLUS_3           8                25
D48V8, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           4                37
  CLUS_3           8                32

Clustering(49) Variable = 6q loss
D49V1, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1           2                22
  CLUS_2           1                21
  CLUS_3           4                14
  CLUS_4           0                19
D49V2, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1           0                26
  CLUS_2           2                25
  CLUS_3           5                25
D49V3, multiclass
D49V4, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           4                27
  CLUS_3           2                41
D49V5, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1           0                 6
  CLUS_2           2                35
  CLUS_3           0                12
  CLUS_4           5                22
D49V6, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1           0                 2
  CLUS_2           5                32
  CLUS_3           2                41
D49V7, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1           0                13
  CLUS_2           2                34
  CLUS_3           5                28
D49V8, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           2                39
  CLUS_3           5                35

Clustering(50) Variable = 7p loss
D50V1, multiclass
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  CLUS_1           4                20
  CLUS_2           0                22
  CLUS_3           6                12
  CLUS_4           0                19
D50V2, multiclass
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  CLUS_1           1                25
  CLUS_2           3                24
  CLUS_3           6                24
D50V3, multiclass
D50V4, multiclass
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  CLUS_1           1                 0
  CLUS_2           6                25
  CLUS_3           3                40
D50V5, multiclass
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  CLUS_1           0                 6
  CLUS_2           3                34
  CLUS_3           2                10
  CLUS_4           5                22
D50V6, multiclass
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  CLUS_1           0                 2
  CLUS_2           6                31
  CLUS_3           4                39
D50V7, multiclass
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  CLUS_1           1                12
  CLUS_2           3                33
  CLUS_3           6                27
D50V8, multiclass
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  CLUS_1           1                 0
  CLUS_2           3                38
  CLUS_3           6                34

Clustering(51) Variable = 7q loss
D51V1, multiclass
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  CLUS_1           2                22
  CLUS_2           1                21
  CLUS_3           4                14
  CLUS_4           1                18
D51V2, multiclass
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  CLUS_1           1                25
  CLUS_2           3                24
  CLUS_3           4                26
D51V3, multiclass
D51V4, multiclass
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           4                27
  CLUS_3           4                39
D51V5, multiclass
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  CLUS_1           1                 5
  CLUS_2           3                34
  CLUS_3           1                11
  CLUS_4           3                24
D51V6, multiclass
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  CLUS_1           0                 2
  CLUS_2           4                33
  CLUS_3           4                39
D51V7, multiclass
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  CLUS_1           1                12
  CLUS_2           3                33
  CLUS_3           4                29
D51V8, multiclass
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           4                37
  CLUS_3           4                36

Clustering(52) Variable = 8p loss
D52V1, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1           5                19
  CLUS_2           4                18
  CLUS_3           5                13
  CLUS_4           0                19
D52V2, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1           5                21
  CLUS_2           5                22
  CLUS_3           4                26
D52V3, multiclass
D52V4, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           5                26
  CLUS_3           7                36
D52V5, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1           1                 5
  CLUS_2           7                30
  CLUS_3           2                10
  CLUS_4           3                24
D52V6, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1           2                 0
  CLUS_2           3                34
  CLUS_3           8                35
D52V7, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1           2                11
  CLUS_2           6                30
  CLUS_3           5                28
D52V8, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           8                33
  CLUS_3           5                35

Clustering(53) Variable = 8q loss
D53V1, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           3                21
  CLUS_2           3                19
  CLUS_3           2                16
  CLUS_4           0                19
D53V2, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           4                22
  CLUS_2           1                26
  CLUS_3           3                27
D53V3, multiclass
D53V4, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           3                28
  CLUS_3           4                39
D53V5, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           0                 6
  CLUS_2           4                33
  CLUS_3           2                10
  CLUS_4           2                25
D53V6, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           1                 1
  CLUS_2           2                35
  CLUS_3           5                38
D53V7, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           2                11
  CLUS_2           3                33
  CLUS_3           3                30
D53V8, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           5                36
  CLUS_3           3                37

Clustering(54) Variable = 9p loss
D54V1, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1          14                10
  CLUS_2           2                20
  CLUS_3           1                17
  CLUS_4           0                19
D54V2, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1           5                21
  CLUS_2           9                18
  CLUS_3           3                27
D54V3, multiclass
D54V4, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1           1                 0
  CLUS_2           3                28
  CLUS_3          13                30
D54V5, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1           4                 2
  CLUS_2           8                29
  CLUS_3           1                11
  CLUS_4           4                23
D54V6, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1           1                 1
  CLUS_2           6                31
  CLUS_3          10                33
D54V7, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1           4                 9
  CLUS_2           9                27
  CLUS_3           4                29
D54V8, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1           1                 0
  CLUS_2           9                32
  CLUS_3           7                33

Clustering(55) Variable = 9q loss
D55V1, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1           7                17
  CLUS_2           0                22
  CLUS_3           1                17
  CLUS_4           0                19
D55V2, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1           3                23
  CLUS_2           4                23
  CLUS_3           1                29
D55V3, multiclass
D55V4, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           1                30
  CLUS_3           7                36
D55V5, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1           3                 3
  CLUS_2           4                33
  CLUS_3           0                12
  CLUS_4           1                26
D55V6, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1           0                 2
  CLUS_2           3                34
  CLUS_3           5                38
D55V7, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1           2                11
  CLUS_2           5                31
  CLUS_3           1                32
D55V8, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1           0                 1
  CLUS_2           5                36
  CLUS_3           3                37

Clustering(56) Variable = 10p loss
D56V1, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1           12                 12
  CLUS_2            1                 21
  CLUS_3            9                  9
  CLUS_4            6                 13
D56V2, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1            2                 24
  CLUS_2            9                 18
  CLUS_3           17                 13
D56V3, multiclass
D56V4, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1            0                  1
  CLUS_2           16                 15
  CLUS_3           10                 33
D56V5, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1            1                  5
  CLUS_2            9                 28
  CLUS_3            2                 10
  CLUS_4           16                 11
D56V6, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1            2                  0
  CLUS_2           16                 21
  CLUS_3           10                 33
D56V7, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1            1                 12
  CLUS_2            9                 27
  CLUS_3           18                 15
D56V8, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            9                 32
  CLUS_3           19                 21

Clustering(57) Variable = 10q loss
D57V1, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1           10                 14
  CLUS_2            0                 22
  CLUS_3           13                  5
  CLUS_4            9                 10
D57V2, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1            2                 24
  CLUS_2           11                 16
  CLUS_3           19                 11
D57V3, multiclass
D57V4, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1            1                  0
  CLUS_2           19                 12
  CLUS_3           11                 32
D57V5, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1            1                  5
  CLUS_2           10                 27
  CLUS_3            4                  8
  CLUS_4           17                 10
D57V6, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1            2                  0
  CLUS_2           19                 18
  CLUS_3           11                 32
D57V7, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1            1                 12
  CLUS_2           10                 26
  CLUS_3           21                 12
D57V8, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1            1                  0
  CLUS_2            9                 32
  CLUS_3           22                 18

Clustering(58) Variable = 11p loss
D58V1, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1            7                 17
  CLUS_2            8                 14
  CLUS_3            8                 10
  CLUS_4            3                 16
D58V2, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1            3                 23
  CLUS_2           15                 12
  CLUS_3            8                 22
D58V3, multiclass
D58V4, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1            1                  0
  CLUS_2            9                 22
  CLUS_3           15                 28
D58V5, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1            2                  4
  CLUS_2           12                 25
  CLUS_3            2                 10
  CLUS_4            9                 18
D58V6, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1            1                  1
  CLUS_2            9                 28
  CLUS_3           15                 28
D58V7, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1            3                 10
  CLUS_2           13                 23
  CLUS_3            9                 24
D58V8, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1            1                  0
  CLUS_2           14                 27
  CLUS_3           10                 30

Clustering(59) Variable = 11q loss
D59V1, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1            5                 19
  CLUS_2            8                 14
  CLUS_3            8                 10
  CLUS_4            0                 19
D59V2, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1            3                 23
  CLUS_2           13                 14
  CLUS_3            5                 25
D59V3, multiclass
D59V4, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1            1                  0
  CLUS_2            6                 25
  CLUS_3           13                 30
D59V5, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1            1                  5
  CLUS_2           12                 25
  CLUS_3            2                 10
  CLUS_4            5                 22
D59V6, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1            0                  2
  CLUS_2            6                 31
  CLUS_3           14                 29
D59V7, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1            3                 10
  CLUS_2           12                 24
  CLUS_3            5                 28
D59V8, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1            1                  0
  CLUS_2           13                 28
  CLUS_3            6                 34

Clustering(60) Variable = 12p loss
D60V1, multiclass
        clus
vv       12P LOSS CNV 12P LOSS WILD-TYPE
  CLUS_1            1                 23
  CLUS_2            3                 19
  CLUS_3            5                 13
  CLUS_4            0                 19
D60V2, multiclass
        clus
vv       12P LOSS CNV 12P LOSS WILD-TYPE
  CLUS_1            1                 25
  CLUS_2            5                 22
  CLUS_3            3                 27
D60V3, multiclass
D60V4, multiclass
        clus
vv       12P LOSS CNV 12P LOSS WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            3                 28
  CLUS_3            5                 38
D60V5, multiclass
        clus
vv       12P LOSS CNV 12P LOSS WILD-TYPE
  CLUS_1            0                  6
  CLUS_2            6                 31
  CLUS_3            1                 11
  CLUS_4            2                 25
D60V6, multiclass
        clus
vv       12P LOSS CNV 12P LOSS WILD-TYPE
  CLUS_1            1                  1
  CLUS_2            2                 35
  CLUS_3            6                 37
D60V7, multiclass
        clus
vv       12P LOSS CNV 12P LOSS WILD-TYPE
  CLUS_1            1                 12
  CLUS_2            5                 31
  CLUS_3            3                 30
D60V8, multiclass
        clus
vv       12P LOSS CNV 12P LOSS WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            6                 35
  CLUS_3            3                 37

Clustering(61) Variable = 12q loss
D61V1, multiclass
        clus
vv       12Q LOSS CNV 12Q LOSS WILD-TYPE
  CLUS_1            4                 20
  CLUS_2            3                 19
  CLUS_3            5                 13
  CLUS_4            1                 18
D61V2, multiclass
        clus
vv       12Q LOSS CNV 12Q LOSS WILD-TYPE
  CLUS_1            3                 23
  CLUS_2            5                 22
  CLUS_3            5                 25
D61V3, multiclass
D61V4, multiclass
        clus
vv       12Q LOSS CNV 12Q LOSS WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            5                 26
  CLUS_3            7                 36
D61V5, multiclass
        clus
vv       12Q LOSS CNV 12Q LOSS WILD-TYPE
  CLUS_1            1                  5
  CLUS_2            7                 30
  CLUS_3            1                 11
  CLUS_4            4                 23
D61V6, multiclass
        clus
vv       12Q LOSS CNV 12Q LOSS WILD-TYPE
  CLUS_1            1                  1
  CLUS_2            5                 32
  CLUS_3            7                 36
D61V7, multiclass
        clus
vv       12Q LOSS CNV 12Q LOSS WILD-TYPE
  CLUS_1            2                 11
  CLUS_2            6                 30
  CLUS_3            5                 28
D61V8, multiclass
        clus
vv       12Q LOSS CNV 12Q LOSS WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            7                 34
  CLUS_3            6                 34

Clustering(62) Variable = 13q loss
D62V1, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1           14                 10
  CLUS_2            4                 18
  CLUS_3           13                  5
  CLUS_4            3                 16
D62V2, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1            6                 20
  CLUS_2           14                 13
  CLUS_3           14                 16
D62V3, multiclass
D62V4, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1            1                  0
  CLUS_2           13                 18
  CLUS_3           17                 26
D62V5, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1            4                  2
  CLUS_2           14                 23
  CLUS_3            3                  9
  CLUS_4           13                 14
D62V6, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1            1                  1
  CLUS_2           16                 21
  CLUS_3           17                 26
D62V7, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1            4                  9
  CLUS_2           15                 21
  CLUS_3           15                 18
D62V8, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1            1                  0
  CLUS_2           16                 25
  CLUS_3           17                 23

Clustering(63) Variable = 14q loss
D63V1, multiclass
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  CLUS_1            9                 15
  CLUS_2            6                 16
  CLUS_3            6                 12
  CLUS_4            3                 16
D63V2, multiclass
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  CLUS_1            6                 20
  CLUS_2            9                 18
  CLUS_3            9                 21
D63V3, multiclass
D63V4, multiclass
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  CLUS_1            1                  0
  CLUS_2            8                 23
  CLUS_3           13                 30
D63V5, multiclass
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  CLUS_1            4                  2
  CLUS_2           11                 26
  CLUS_3            3                  9
  CLUS_4            6                 21
D63V6, multiclass
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  CLUS_1            1                  1
  CLUS_2           12                 25
  CLUS_3           11                 32
D63V7, multiclass
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  CLUS_1            5                  8
  CLUS_2           10                 26
  CLUS_3            9                 24
D63V8, multiclass
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  CLUS_1            1                  0
  CLUS_2           10                 31
  CLUS_3           13                 27

Clustering(64) Variable = 15q loss
D64V1, multiclass
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  CLUS_1            4                 20
  CLUS_2            4                 18
  CLUS_3            3                 15
  CLUS_4            0                 19
D64V2, multiclass
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  CLUS_1            3                 23
  CLUS_2            6                 21
  CLUS_3            2                 28
D64V3, multiclass
D64V4, multiclass
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            1                 30
  CLUS_3            7                 36
D64V5, multiclass
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  CLUS_1            0                  6
  CLUS_2           10                 27
  CLUS_3            0                 12
  CLUS_4            1                 26
D64V6, multiclass
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  CLUS_1            1                  1
  CLUS_2            1                 36
  CLUS_3            9                 34
D64V7, multiclass
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  CLUS_1            0                 13
  CLUS_2            9                 27
  CLUS_3            2                 31
D64V8, multiclass
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            9                 32
  CLUS_3            2                 38

Clustering(65) Variable = 16p loss
D65V1, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1            4                 20
  CLUS_2            2                 20
  CLUS_3            9                  9
  CLUS_4            1                 18
D65V2, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1            2                 24
  CLUS_2            7                 20
  CLUS_3            7                 23
D65V3, multiclass
D65V4, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1            1                  0
  CLUS_2            6                 25
  CLUS_3            8                 35
D65V5, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1            1                  5
  CLUS_2            9                 28
  CLUS_3            0                 12
  CLUS_4            6                 21
D65V6, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1            1                  1
  CLUS_2            7                 30
  CLUS_3            8                 35
D65V7, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1            1                 12
  CLUS_2            8                 28
  CLUS_3            7                 26
D65V8, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1            1                  0
  CLUS_2            7                 34
  CLUS_3            8                 32

Clustering(66) Variable = 16q loss
D66V1, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1           10                 14
  CLUS_2            5                 17
  CLUS_3           11                  7
  CLUS_4            8                 11
D66V2, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1            2                 24
  CLUS_2           13                 14
  CLUS_3           19                 11
D66V3, multiclass
D66V4, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1            1                  0
  CLUS_2           18                 13
  CLUS_3           13                 30
D66V5, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1            3                  3
  CLUS_2           10                 27
  CLUS_3            2                 10
  CLUS_4           19                  8
D66V6, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1            2                  0
  CLUS_2           20                 17
  CLUS_3           12                 31
D66V7, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1            4                  9
  CLUS_2           10                 26
  CLUS_3           20                 13
D66V8, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1            1                  0
  CLUS_2           11                 30
  CLUS_3           22                 18

Clustering(67) Variable = 17p loss
D67V1, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1            4                 20
  CLUS_2            2                 20
  CLUS_3            1                 17
  CLUS_4            5                 14
D67V2, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1            1                 25
  CLUS_2            4                 23
  CLUS_3            7                 23
D67V3, multiclass
D67V4, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            7                 24
  CLUS_3            5                 38
D67V5, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1            1                  5
  CLUS_2            4                 33
  CLUS_3            1                 11
  CLUS_4            6                 21
D67V6, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1            0                  2
  CLUS_2            8                 29
  CLUS_3            4                 39
D67V7, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1            1                 12
  CLUS_2            4                 32
  CLUS_3            7                 26
D67V8, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            4                 37
  CLUS_3            8                 32

Clustering(68) Variable = 17q loss
D68V1, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1            2                 22
  CLUS_2            2                 20
  CLUS_3            1                 17
  CLUS_4            3                 16
D68V2, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1            0                 26
  CLUS_2            3                 24
  CLUS_3            5                 25
D68V3, multiclass
D68V4, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            5                 26
  CLUS_3            3                 40
D68V5, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1            1                  5
  CLUS_2            2                 35
  CLUS_3            0                 12
  CLUS_4            5                 22
D68V6, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1            0                  2
  CLUS_2            6                 31
  CLUS_3            2                 41
D68V7, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1            1                 12
  CLUS_2            2                 34
  CLUS_3            5                 28
D68V8, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            2                 39
  CLUS_3            6                 34

Clustering(69) Variable = 18p loss
D69V1, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1            3                 21
  CLUS_2            2                 20
  CLUS_3            5                 13
  CLUS_4            3                 16
D69V2, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1            1                 25
  CLUS_2            7                 20
  CLUS_3            5                 25
D69V3, multiclass
D69V4, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            5                 26
  CLUS_3            8                 35
D69V5, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1            1                  5
  CLUS_2            7                 30
  CLUS_3            0                 12
  CLUS_4            5                 22
D69V6, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1            0                  2
  CLUS_2            6                 31
  CLUS_3            7                 36
D69V7, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1            1                 12
  CLUS_2            7                 29
  CLUS_3            5                 28
D69V8, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            7                 34
  CLUS_3            6                 34

Clustering(70) Variable = 18q loss
D70V1, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1            5                 19
  CLUS_2            2                 20
  CLUS_3            6                 12
  CLUS_4            1                 18
D70V2, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1            2                 24
  CLUS_2            7                 20
  CLUS_3            5                 25
D70V3, multiclass
D70V4, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            4                 27
  CLUS_3            9                 34
D70V5, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1            2                  4
  CLUS_2            7                 30
  CLUS_3            0                 12
  CLUS_4            5                 22
D70V6, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1            0                  2
  CLUS_2            7                 30
  CLUS_3            7                 36
D70V7, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1            2                 11
  CLUS_2            7                 29
  CLUS_3            5                 28
D70V8, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            7                 34
  CLUS_3            7                 33

Clustering(71) Variable = 19p loss
D71V1, multiclass
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  CLUS_1            1                 23
  CLUS_2            0                 22
  CLUS_3            2                 16
  CLUS_4            1                 18
D71V2, multiclass
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  CLUS_1            0                 26
  CLUS_2            1                 26
  CLUS_3            3                 27
D71V3, multiclass
D71V4, multiclass
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            2                 29
  CLUS_3            1                 42
D71V5, multiclass
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  CLUS_1            0                  6
  CLUS_2            1                 36
  CLUS_3            0                 12
  CLUS_4            3                 24
D71V6, multiclass
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  CLUS_1            0                  2
  CLUS_2            3                 34
  CLUS_3            1                 42
D71V7, multiclass
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  CLUS_1            0                 13
  CLUS_2            1                 35
  CLUS_3            3                 30
D71V8, multiclass
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            1                 40
  CLUS_3            3                 37

Clustering(72) Variable = 19q loss
D72V1, multiclass
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  CLUS_1            2                 22
  CLUS_2            1                 21
  CLUS_3            3                 15
  CLUS_4            3                 16
D72V2, multiclass
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  CLUS_1            0                 26
  CLUS_2            4                 23
  CLUS_3            5                 25
D72V3, multiclass
D72V4, multiclass
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            4                 27
  CLUS_3            4                 39
D72V5, multiclass
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  CLUS_1            0                  6
  CLUS_2            4                 33
  CLUS_3            0                 12
  CLUS_4            5                 22
D72V6, multiclass
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  CLUS_1            0                  2
  CLUS_2            5                 32
  CLUS_3            4                 39
D72V7, multiclass
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  CLUS_1            0                 13
  CLUS_2            4                 32
  CLUS_3            5                 28
D72V8, multiclass
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            4                 37
  CLUS_3            5                 35

Clustering(73) Variable = 20p loss
D73V1, multiclass
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  CLUS_1            4                 20
  CLUS_2            3                 19
  CLUS_3            1                 17
  CLUS_4            2                 17
D73V2, multiclass
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  CLUS_1            2                 24
  CLUS_2            4                 23
  CLUS_3            4                 26
D73V3, multiclass
D73V4, multiclass
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            4                 27
  CLUS_3            5                 38
D73V5, multiclass
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  CLUS_1            0                  6
  CLUS_2            6                 31
  CLUS_3            1                 11
  CLUS_4            3                 24
D73V6, multiclass
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  CLUS_1            1                  1
  CLUS_2            3                 34
  CLUS_3            6                 37
D73V7, multiclass
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  CLUS_1            1                 12
  CLUS_2            5                 31
  CLUS_3            4                 29
D73V8, multiclass
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            6                 35
  CLUS_3            4                 36

Clustering(74) Variable = 20q loss
D74V1, multiclass
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  CLUS_1            1                 23
  CLUS_2            2                 20
  CLUS_3            1                 17
  CLUS_4            0                 19
D74V2, multiclass
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  CLUS_1            2                 24
  CLUS_2            1                 26
  CLUS_3            1                 29
D74V3, multiclass
D74V4, multiclass
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            1                 30
  CLUS_3            2                 41
D74V5, multiclass
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  CLUS_1            0                  6
  CLUS_2            3                 34
  CLUS_3            1                 11
  CLUS_4            0                 27
D74V6, multiclass
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  CLUS_1            1                  1
  CLUS_2            0                 37
  CLUS_3            3                 40
D74V7, multiclass
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  CLUS_1            1                 12
  CLUS_2            2                 34
  CLUS_3            1                 32
D74V8, multiclass
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            3                 38
  CLUS_3            1                 39

Clustering(75) Variable = 21q loss
D75V1, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1            6                 18
  CLUS_2            3                 19
  CLUS_3            3                 15
  CLUS_4            0                 19
D75V2, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1            4                 22
  CLUS_2            4                 23
  CLUS_3            4                 26
D75V3, multiclass
D75V4, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            4                 27
  CLUS_3            8                 35
D75V5, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1            0                  6
  CLUS_2            7                 30
  CLUS_3            3                  9
  CLUS_4            2                 25
D75V6, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1            1                  1
  CLUS_2            4                 33
  CLUS_3            7                 36
D75V7, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1            2                 11
  CLUS_2            6                 30
  CLUS_3            4                 29
D75V8, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            7                 34
  CLUS_3            5                 35

Clustering(76) Variable = 22q loss
D76V1, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1            8                 16
  CLUS_2            5                 17
  CLUS_3            4                 14
  CLUS_4            4                 15
D76V2, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1            3                 23
  CLUS_2            9                 18
  CLUS_3            9                 21
D76V3, multiclass
D76V4, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1            0                  1
  CLUS_2            8                 23
  CLUS_3           12                 31
D76V5, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1            2                  4
  CLUS_2           10                 27
  CLUS_3            2                 10
  CLUS_4            7                 20
D76V6, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1            0                  2
  CLUS_2           10                 27
  CLUS_3           11                 32
D76V7, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1            2                 11
  CLUS_2           10                 26
  CLUS_3            9                 24
D76V8, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1            0                  1
  CLUS_2           11                 30
  CLUS_3           10                 30

Clustering(77) Variable = Xq loss
D77V1, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1           6                18
  CLUS_2           2                20
  CLUS_3           5                13
  CLUS_4           1                18
D77V2, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1           2                24
  CLUS_2           8                19
  CLUS_3           4                26
D77V3, multiclass
D77V4, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1           1                 0
  CLUS_2           4                27
  CLUS_3           8                35
D77V5, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1           2                 4
  CLUS_2           7                30
  CLUS_3           3                 9
  CLUS_4           2                25
D77V6, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1           0                 2
  CLUS_2           5                32
  CLUS_3           9                34
D77V7, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1           3                10
  CLUS_2           7                29
  CLUS_3           4                29
D77V8, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1           1                 0
  CLUS_2           8                33
  CLUS_3           5                35
                           V1                            V2 
                    "CN_CNMF"            "METHLYATION_CNMF" 
                           V3                            V4 
               "MRNASEQ_CNMF"       "MRNASEQ_CHIERARCHICAL" 
                           V5                            V6 
                "MIRSEQ_CNMF"        "MIRSEQ_CHIERARCHICAL" 
                           V7                            V8 
         "MIRSEQ_MATURE_CNMF" "MIRSEQ_MATURE_CHIERARCHICAL" 
> q(save="no")
