Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-D3-A1Q7-06A-11D-A18Z-02	TCGA-D3-A1Q8-06A-11D-A18Z-02	TCGA-D3-A1Q9-06A-11D-A18Z-02	TCGA-D3-A1QB-06A-11D-A18Z-02	TCGA-D3-A2J6-06A-11D-A18Z-02	TCGA-D3-A2JC-06A-11D-A18Z-02	TCGA-D3-A2JD-06A-11D-A18Z-02	TCGA-D3-A2JP-06A-11D-A18Z-02	TCGA-D3-A3C3-06A-12D-A18Z-02	TCGA-D3-A3C8-06A-12D-A18Z-02	TCGA-D3-A3CC-06A-11D-A18Z-02	TCGA-D3-A3CE-06A-11D-A18Z-02	TCGA-D9-A148-06A-11D-A18Z-02	TCGA-D9-A1JW-06A-11D-A18Z-02	TCGA-D9-A1JX-06A-11D-A18Z-02	TCGA-DA-A1HW-06A-11D-A18Z-02	TCGA-DA-A1HY-06A-11D-A18Z-02	TCGA-DA-A1I2-06A-21D-A18Z-02	TCGA-DA-A1I5-06A-11D-A18Y-02	TCGA-DA-A1I7-06A-22D-A18Y-02	TCGA-DA-A1I8-06A-11D-A18Y-02	TCGA-DA-A1IC-06A-11D-A18Y-02	TCGA-EE-A17X-06A-11D-A18Y-02	TCGA-EE-A20H-06A-11D-A18Y-02	TCGA-EE-A29B-06A-11D-A18Y-02	TCGA-EE-A29C-06A-21D-A18Y-02	TCGA-EE-A29D-06A-11D-A18Y-02	TCGA-EE-A29E-06A-11D-A18Y-02	TCGA-EE-A29H-06A-12D-A18Y-02	TCGA-EE-A29N-06A-12D-A18Y-02	TCGA-EE-A29P-06A-11D-A18Y-02	TCGA-EE-A29Q-06A-11D-A18Y-02	TCGA-EE-A29R-06A-11D-A18Y-02	TCGA-EE-A29S-06A-11D-A18Y-02	TCGA-EE-A29T-06A-11D-A18Y-02	TCGA-EE-A29V-06A-12D-A18Y-02	TCGA-EE-A2A1-06A-11D-A18Y-02	TCGA-EE-A2A6-06A-11D-A18Y-02	TCGA-EE-A2GB-06A-11D-A18Y-02	TCGA-EE-A2GC-06A-11D-A18Y-02	TCGA-EE-A2GP-06A-11D-A18Y-02	TCGA-EE-A2GR-06A-11D-A18Y-02	TCGA-EE-A2GS-06A-12D-A18Y-02	TCGA-EE-A2GT-06A-12D-A18Y-02	TCGA-EE-A2M5-06A-12D-A18Y-02	TCGA-EE-A2M6-06A-12D-A18Y-02	TCGA-EE-A2M7-06A-11D-A18Y-02	TCGA-EE-A2MC-06A-12D-A18Y-02	TCGA-EE-A2MD-06A-11D-A18Y-02	TCGA-EE-A2ME-06A-11D-A18Y-02	TCGA-EE-A2MG-06A-11D-A18Y-02	TCGA-EE-A2MH-06A-11D-A18Y-02	TCGA-EE-A2MI-06A-11D-A18Y-02	TCGA-EE-A2MJ-06A-11D-A18Y-02	TCGA-EE-A2ML-06A-11D-A18Y-02	TCGA-EE-A2MN-06A-11D-A18Y-02	TCGA-EE-A2MP-06A-11D-A18Y-02	TCGA-EE-A2MQ-06A-11D-A18Y-02	TCGA-EE-A2MS-06A-11D-A18Y-02	TCGA-EE-A2MT-06A-11D-A18Y-02	TCGA-ER-A193-06A-12D-A18Y-02	TCGA-ER-A197-06A-32D-A18Y-02	TCGA-ER-A199-06A-11D-A18Y-02	TCGA-ER-A19A-06A-21D-A18Y-02	TCGA-ER-A19D-06A-11D-A18Y-02	TCGA-ER-A19E-06A-11D-A18Y-02	TCGA-ER-A19L-06A-12D-A18Y-02	TCGA-ER-A19N-06A-11D-A18Y-02	TCGA-ER-A19O-06A-11D-A18Y-02	TCGA-ER-A19Q-06A-11D-A18Y-02	TCGA-ER-A19T-06A-11D-A18Z-02	TCGA-ER-A1A1-06A-11D-A18Y-02	TCGA-ER-A2NC-06A-11D-A18Y-02	TCGA-ER-A2NF-06A-11D-A18Z-02	TCGA-FS-A1YW-06A-11D-A18Y-02	TCGA-FS-A1YX-06A-11D-A18Y-02	TCGA-FS-A1YY-06A-11D-A18Y-02	TCGA-FS-A1Z0-06A-11D-A18Y-02	TCGA-FS-A1Z3-06A-11D-A18Y-02	TCGA-FS-A1Z4-06A-11D-A18Y-02	TCGA-FS-A1Z7-06A-11D-A18Y-02	TCGA-FS-A1ZA-06A-11D-A18Y-02	TCGA-FS-A1ZB-06A-12D-A18Y-02	TCGA-FS-A1ZC-06A-11D-A18Y-02	TCGA-FS-A1ZD-06A-11D-A18Y-02	TCGA-FS-A1ZE-06A-11D-A18Y-02	TCGA-FS-A1ZF-06A-12D-A18Y-02	TCGA-FS-A1ZG-06A-11D-A18Y-02	TCGA-FS-A1ZH-06A-11D-A18Y-02	TCGA-FS-A1ZJ-06A-12D-A18Y-02	TCGA-FS-A1ZK-06A-11D-A18Y-02	TCGA-FS-A1ZM-06A-12D-A18Y-02	TCGA-FS-A1ZP-06A-11D-A18Y-02	TCGA-FS-A1ZQ-06A-11D-A18Y-02	TCGA-FS-A1ZR-06A-21D-A18Y-02	TCGA-FS-A1ZS-06A-12D-A18Y-02	TCGA-FS-A1ZT-06A-11D-A18Y-02	TCGA-FS-A1ZW-06A-12D-A18Y-02	TCGA-FS-A1ZY-06A-11D-A18Y-02	TCGA-FS-A1ZZ-06A-11D-A18Y-02	TCGA-GN-A261-06A-12D-A18Y-02	TCGA-GN-A265-06A-21D-A18Y-02	TCGA-GN-A266-06A-11D-A18Y-02	
Amplification Peak 1	1p12   	chr1:119726941-150032773(probes 620:636)  	chr1:120071973-150032772(probes 632:635)  	chr1:117886404-150037293(probes 577:638)  	0.0041484	 0.0041484		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	2	0	0	1	0	2	2	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	2	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	
Amplification Peak 2	3p13   	chr3:69568300-70308555(probes 2234:2265)    	chr3:69884902-69894897(probes 2247:2248)    	chr3:69410087-72891576(probes 2231:2279)    	0.0045949	 0.0045949		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	2	0	0	2	0	0	0	0	2	1	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	
Amplification Peak 3	5p15.31	chr5:8145603-10301016(probes 3992:4053)      	chr5:9292705-9295704(probes 4023:4024)        	chr5:9292705-9451667(probes 4023:4030)        	0.14118	   0.14118		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	2	0	0	2	0	1	0	0	2	0	2	1	0	0	0	1	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	
Amplification Peak 4	7p22.2 	chr7:1-8646788(probes 6357:6459)               	chr7:3580242-3593516(probes 6410:6413)        	chr7:3298188-5388358(probes 6409:6425)        	0.078722	  0.078722		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	1	0	0	1	2	1	0	0	0	0	1	0	1	0	2	1	1	1	2	2	0	2	0	1	2	0	0	1	2	2	0	0	2	0	0	2	2	0	1	0	0	0	1	0	1	0	0	0	0	0	0	1	0	2	1	1	2	0	0	0	0	0	0	2	0	0	1	0	1	0	0	0	0	0	0	0	2	0	2	0	0	1	1	2	0	0	1	0	2	2	0	0	1	0	0	0	2	2	0	0	1	
Amplification Peak 5	8q21.13	chr8:57982050-87003878(probes 7592:7798)    	chr8:81120092-81896171(probes 7768:7777)    	chr8:81120092-81934931(probes 7768:7780)    	0.24016	   0.24016		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	1	2	2	1	1	2	0	0	1	1	0	1	0	0	1	1	0	0	0	0	0	0	0	1	0	1	1	0	0	0	1	0	1	0	0	0	0	0	1	0	2	0	0	1	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	2	2	0	1	2	1	0	1	2	0	0	1	0	0	1	1	0	0	0	0	0	2	0	2	0	1	1	1	0	1	0	0	0	0	
Amplification Peak 6	11q13.3	chr11:68594424-71666457(probes 9568:9637)  	chr11:69788613-70074236(probes 9587:9594)  	chr11:69152738-70528368(probes 9581:9607)  	0.11333	   0.11333		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	2	0	2	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	2	0	0	2	1	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	2	0	0	0	0	1	2	0	0	0	0	0	0	
Amplification Peak 7	12q15  	chr12:68983694-69478370(probes 10919:10930)	chr12:69125534-69373351(probes 10924:10929)	chr12:68766626-70834309(probes 10912:10954)	0.0090923	 0.0090923		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	
Amplification Peak 8	20q13.2	chr20:47396006-63025520(probes 14331:14513)	chr20:50046847-50269673(probes 14356:14359)	chr20:49985726-50457747(probes 14354:14362)	0.18044	   0.18044		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	1	0	0	2	1	1	1	0	0	1	1	0	1	0	0	1	0	2	0	0	0	1	0	0	2	2	0	0	1	0	1	0	1	0	2	2	1	0	2	0	0	0	1	1	0	1	0	0	0	2	0	0	0	0	2	0	2	1	1	0	0	0	0	2	2	0	0	2	1	0	2	0	0	0	0	0	0	1	1	1	0	1	1	2	0	1	0	2	1	1	0	0	0	1	2	0	2	0	0	0	0	
Amplification Peak 9	22q13.2	chr22:40441512-42059356(probes 14950:15006)	chr22:41641728-41752947(probes 14988:14991)	chr22:40441513-42080423(probes 14951:15008)	0.026196	  0.026196		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	2	0	1	0	0	0	1	2	0	1	0	0	0	0	1	1	0	0	1	0	0	0	0	0	1	0	0	1	0	0	0	0	2	1	0	0	0	0	0	0	2	0	0	0	2	0	0	0	1	0	2	0	2	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	2	0	0	0	0	1	0	0	2	2	0	2	1	0	2	1	0	0	0	1	1	0	2	0	0	1	0	
Deletion Peak 1	1p36.31 	chr1:1-6900801(probes 1:39)                         	chr1:5457034-6270931(probes 29:33)                	chr1:5086893-6344168(probes 24:36)             	0.098789	   0.098789		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	0	1	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak 2	4q34.3  	chr4:182105085-182565336(probes 3737:3772)    	chr4:182183397-182197911(probes 3750:3755)    	chr4:182114198-182471536(probes 3740:3770) 	0.054351	   0.054351		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	2	0	0	0	0	0	0	0	1	0	1	0	0	2	1	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	1	0	2	1	1	1	2	1	0	0	0	0	0	0	0	0	0	0	0	1	
Deletion Peak 3	9p21.3  	chr9:21946194-21977643(probes 8263:8274)        	chr9:21968782-21969800(probes 8268:8269)        	chr9:20820491-25036605(probes 8190:8376)     	3.6356e-61	 4.7012e-23		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	0	0	1	1	0	1	1	0	1	2	1	0	2	1	1	2	1	1	1	1	2	1	0	1	2	1	2	1	1	2	2	1	1	1	0	1	1	1	1	2	2	0	1	1	1	0	1	0	0	1	1	0	2	1	0	0	1	0	1	1	0	0	1	1	1	1	1	1	1	0	2	0	1	2	1	0	2	0	1	2	1	2	2	1	2	1	1	2	1	1	0	1	2	2	1	1	2	0	0	1	0	
Deletion Peak 4	9p21.3  	chr9:21975057-22009600(probes 8275:8284)        	chr9:21987216-21989244(probes 8278:8279)        	chr9:20820491-25036605(probes 8190:8376)     	1.0907e-60	 9.8954e-18		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	0	0	1	1	0	1	1	0	0	2	1	0	2	1	2	2	1	1	1	1	2	1	0	1	2	1	2	1	1	2	2	1	1	1	0	1	1	1	1	2	2	0	1	1	0	0	1	0	0	1	1	0	2	1	0	0	1	0	1	1	0	0	1	1	1	1	1	1	1	0	2	0	1	2	1	2	2	0	1	2	1	2	2	1	2	1	1	2	1	1	0	1	2	2	1	1	2	0	0	1	0	
Deletion Peak 5	10q23.31	chr10:89609324-89919188(probes 9115:9128)      	chr10:89646947-89704494(probes 9118:9120)      	chr10:89622617-89705495(probes 9116:9123)   	0.11093	    0.11093		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	1	2	0	0	1	1	1	0	0	2	1	1	0	2	1	0	1	1	1	1	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	0	1	1	1	1	0	1	0	0	1	1	0	1	0	0	1	1	0	0	0	1	0	0	0	1	0	0	0	1	1	1	0	0	0	1	0	1	0	0	1	1	0	1	0	1	1	0	1	1	0	1	0	1	1	1	1	0	1	2	0	0	0	1	0	0	0	1	
Deletion Peak 6	11q23.3 	chr11:105910449-135006516(probes 10094:10298)	chr11:116879492-118610638(probes 10169:10184)	chr11:92727674-135006516(probes 9988:10298)	1.1792e-05	 1.1792e-05		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	0	1	1	1	1	1	0	0	0	0	0	1	1	1	1	0	0	1	0	1	0	0	1	0	1	1	0	1	0	0	1	1	1	1	1	0	0	1	1	0	1	0	0	0	0	0	1	1	0	0	0	0	0	1	1	1	0	1	1	0	1	0	0	1	0	1	1	1	1	1	0	0	1	0	0	0	1	1	0	1	1	1	0	0	1	1	0	1	1	1	0	0	1	0	0	1	0	1	1	0	0	1	
Amplification Peak 1 - CN values	1p12   	chr1:119726941-150032773(probes 620:636)  	chr1:120071973-150032772(probes 632:635)  	chr1:117886404-150037293(probes 577:638)  	0.0041484	 0.0041484		Actual Copy Change Given	0.0092125	0.013667	-0.56149	0.012811	5.6136	0.35269	0.30807	-0.0027822	0.0069542	0.02206	0.047698	-0.03589	-0.011138	-0.0049967	-0.0036284	0.056487	0.02025	0.099636	0	-0.44128	-0.31846	-0.0069773	0.017179	-0.63253	-0.0015864	0.58152	0.894	0.34046	0.00017269	-0.060347	-0.026394	0.037261	-0.31705	0.015856	-0.34232	2.5787	0.019824	0	0.54417	-0.018259	1.1174	6	0.0049493	0.0068728	-0.012616	-0.20054	-0.29552	-0.0098732	0.62676	-0.01853	0.065315	0	6	0.20033	-0.0091442	0.0058571	-0.19948	0.80264	-0.56177	-0.0072904	-0.62869	-0.11642	0.022466	0.024375	1.2798	1.1923	0.052391	-0.0080943	-0.0038123	0.0053497	0.53426	0	0.24986	-0.0066831	0.0057498	0.18459	0.0011993	-0.22353	0.012715	-0.00011879	-0.24261	-0.78172	0.52821	0.048593	-0.014863	0.0026553	0.017059	-0.03088	0.23395	-0.59447	0.042594	0.02657	-0.002453	0.028345	-0.00056596	0	-0.25696	0.094825	-0.022092	0.0068877	-0.0079473	0.29121	0.46996	
Amplification Peak 2 - CN values	3p13   	chr3:69568300-70308555(probes 2234:2265)    	chr3:69884902-69894897(probes 2247:2248)    	chr3:69410087-72891576(probes 2231:2279)    	0.0045949	 0.0045949		Actual Copy Change Given	-0.13745	0.012266	6	-0.0097966	0	1.3703	0.28277	-0.0012587	-0.0031227	-0.016229	1.1427	0.60575	0.063436	0.012239	0.02194	2.1504	-0.76284	-0.5348	2.1693	-0.43413	0.024502	0.017537	0	-0.62692	0.04474	-0.10593	0.058484	0.0054136	4.9583	0.055324	-0.02954	0.075531	0.58929	-0.00097496	0.66106	0.022283	0.017038	0.05615	-0.0097451	0.13248	0.40128	0.086202	0.035962	-0.0093284	0.23426	3.421	-0.21952	0.015081	0.0068363	0.0085689	0.1115	0.057921	0.0087085	-0.00019436	0.029629	-0.00695	0.26883	0.013945	0.013488	0.0080135	0.015373	0.054576	0.028151	0.028501	0.031134	0.11178	0.025509	0.020907	0.026148	0.012543	-0.52318	-0.0059363	-0.012903	0.00094007	0.00094155	-0.63262	0.0010741	0.13308	0	0.20239	0.0049433	0.04194	0.014068	0.0022039	-0.014011	0.0031527	-0.026517	0.027167	0.0087254	0.039723	0.046756	-0.34693	0.02038	-0.71243	0.0054116	-0.013045	0.12192	0.12029	0.012523	0.0075396	0.0067828	2.3175	0.36182	
Amplification Peak 3 - CN values	5p15.31	chr5:8145603-10301016(probes 3992:4053)      	chr5:9292705-9295704(probes 4023:4024)        	chr5:9292705-9451667(probes 4023:4030)        	0.14118	   0.14118		Actual Copy Change Given	-0.0002909	0.0080715	3.5029	0.0042652	0.032304	6	-0.32351	0.44433	-0.021216	0	1.9361	-0.0082082	1.274	0.79322	-0.011973	-0.23263	0	0.52325	-0.5979	-0.024795	0.012022	0.00021261	-0.91382	1.1508	-0.020386	-0.43149	0.089441	0.38404	-0.023878	-0.011024	-0.049989	-0.067943	0	-0.028714	1.0026	0.011611	0.017406	-0.019073	-0.13506	-0.075788	-0.082279	-0.45892	0.01907	-0.034547	0.015469	0.56192	0.051006	0.00033162	-0.0078636	0.0037996	0.070853	0.0075982	0.013005	-0.028141	0.0069619	-0.0094205	0.60295	-0.79541	0.41088	0.0015157	0.01076	0.25319	-0.10536	-0.019828	-0.017666	-0.0227	-0.0058776	0.25161	0.47273	0.59426	0.36461	0.014576	0.0011208	0.0049937	-0.017003	0.14079	0.0017437	0	-0.040391	-0.026132	-0.022281	0.024257	-0.037346	-0.0036402	-0.60881	0.91271	0.0072548	0.80686	0.0048225	-0.058408	0.67949	-0.39877	-0.013518	0.25315	-0.0025271	0.0077915	-0.62752	-0.25464	-0.64083	-0.010493	0.010726	-0.035862	-0.35195	
Amplification Peak 4 - CN values	7p22.2 	chr7:1-8646788(probes 6357:6459)               	chr7:3580242-3593516(probes 6410:6413)        	chr7:3298188-5388358(probes 6409:6425)        	0.078722	  0.078722		Actual Copy Change Given	-0.0040045	0.0022643	0.30193	-0.0027683	0.020505	0.36165	1.2802	0.44962	0.015761	0.16747	0.18871	-0.50791	0.44421	0.0092763	0.79859	-0.16446	1.0306	0.58287	0.61536	0.89925	1.3645	1.54	0.0032644	1.1566	0.014693	0.65405	1.4769	0.16217	0.1106	0.42517	0.92379	1.1721	-0.01185	0.0067029	1.3065	0.034323	-0.0062658	1.0779	1.1194	0.044951	0.37475	0.029112	0.037529	0.00056696	0.44464	0.049032	0.45891	-0.0014322	0.0062068	0.10224	0.07887	-0.013327	-0.0012162	0.41364	0.015812	1.5753	0.7468	0.80048	1.5318	0.0046777	0.014718	-0.1856	0.21754	0.041765	0.0049176	1.5251	0.078735	-0.011614	0.47874	0	0.42214	0.016902	-0.0024675	-0.0019701	-0.013297	-0.643	-0.0013965	-0.023128	6	0.181	1.1791	0.018604	0.028074	0.60998	0.59918	3.7222	-0.0017671	-0.76542	0.33279	0.053386	5.7619	1.0401	0.032869	0.058927	0.41304	-0.43213	-0.11253	0.07837	1.8372	0.96673	-0.0079963	-0.075455	0.44956	
Amplification Peak 5 - CN values	8q21.13	chr8:57982050-87003878(probes 7592:7798)    	chr8:81120092-81896171(probes 7768:7777)    	chr8:81120092-81934931(probes 7768:7780)    	0.24016	   0.24016		Actual Copy Change Given	0.084865	0.00061294	0.32707	1.7592	1.3795	0.32985	0.34291	1.2654	-0.017985	-0.018946	0.30492	0.41277	0.022906	0.77586	-0.027433	0.081402	0.49836	0.54539	0.0068406	0.0048455	0.016117	0	-0.0094245	-0.048516	-0.0017802	0.6649	-0.14248	0.8388	0.74624	0.048821	0.1437	0.067048	0.89069	0.0052609	0.64547	0.0061373	-0.048064	-0.01276	-0.04626	0.030629	0.43987	0.030326	0.92566	-0.01456	-0.13218	0.57361	0.058539	0.004855	-0.0057452	-0.00085826	0.069704	6	-0.11196	0.20313	0.0027482	0.80315	-0.11983	0	0	0.00547	-0.014829	0.098992	-0.18442	-0.00048122	-0.013642	-0.22384	1.6196	0.29862	-0.0051806	1.0842	0.96201	0.0062852	0.74298	1.6042	0.8477	0.20905	0.74079	1.0673	-0.045119	0.15868	0.59212	-0.38106	-0.001183	0.59989	0.56152	-1.0959e-05	-0.00095702	-0.028378	0.0012059	-0.0076988	1.2956	0.261	5.6517	0.064139	0.78699	0.76703	0.3077	0	0.63716	-0.00025467	0.0063512	-0.043397	0.08176	
Amplification Peak 6 - CN values	11q13.3	chr11:68594424-71666457(probes 9568:9637)  	chr11:69788613-70074236(probes 9587:9594)  	chr11:69152738-70528368(probes 9581:9607)  	0.11333	   0.11333		Actual Copy Change Given	-0.36892	-0.51842	1.2131	0.00084265	6	0.24612	-0.33622	0.45131	0.87749	-0.068249	-0.2679	0.39502	0	-0.0077285	-0.76906	-0.34262	-0.01401	0	-0.35327	-0.010662	-0.33493	-0.0060098	-0.0050967	-0.020327	-0.016387	-0.59374	0.031279	-0.023654	0.020735	-0.14945	-0.039289	-0.73862	-0.33066	0.0069367	-0.32099	-0.0059158	-0.040236	-0.013467	0.53621	-0.31873	0.42409	0.28862	-0.078648	-0.080096	0.17788	-0.21435	-0.29166	0.41039	-0.63424	-0.075429	-0.090589	-0.027178	0	-0.00070903	-0.0089837	-0.76484	-0.15708	-0.020568	-0.007134	-0.0037265	-0.27467	-0.13108	-0.19678	-0.047832	-0.46496	0.05003	-0.855	0.32441	-0.016436	2.3652	6	-0.038668	-0.020608	1.5963	0.85719	0	-0.0060623	-0.090162	0.0053766	0.00024253	-0.60935	-0.79211	1.1369	-0.020879	0.55583	-0.0052722	-0.22089	-0.0081134	-0.6345	0.056225	5.481	-0.18209	-0.0201	0.038636	-0.019042	0.40048	1.1645	-0.30441	-0.013065	-0.014304	0.0056437	0	0.16274	
Amplification Peak 7 - CN values	12q15  	chr12:68983694-69478370(probes 10919:10930)	chr12:69125534-69373351(probes 10924:10929)	chr12:68766626-70834309(probes 10912:10954)	0.0090923	 0.0090923		Actual Copy Change Given	0.0020862	-0.0073386	0.29038	0.0010301	0.0033164	-0.024893	-0.010726	-0.0011038	0.016577	0.014589	6	-0.062502	0.019093	0	0.019661	0.11098	0.010692	0.019286	0.0075341	-0.0017982	0.019245	0.0017975	0.015645	0	0.0043225	0.054299	0.19967	-0.012938	0.00039292	0.057809	-0.17852	-0.73002	-0.016357	0.021987	-0.016582	0	-0.024101	0.47572	0.47138	0	-0.28185	-0.47566	-0.018588	0.0077485	0.15173	0	-0.28583	0.02306	0.011827	-0.010932	-0.25843	-0.030465	-0.0088352	0	-0.0013341	-0.015496	-0.20073	0.02375	4.6782	-0.013915	6	0.76639	-0.1774	-0.019232	0.067182	-0.61661	0.0046527	-0.011347	0	-0.0064626	-0.021665	0.0057213	-0.00159	0	-0.0012205	-0.63545	0	-0.11365	0.0057991	-0.2053	0.0021162	-0.3836	0.039445	-0.0014653	0	-0.00016446	0.020887	0.047335	-0.31083	0.014224	0.062418	1.0895	-0.0014271	1.9196	0.0071815	-0.10671	-0.25099	0.099715	0.022963	-0.0019816	-0.0083799	-0.041529	-0.060377	
Amplification Peak 8 - CN values	20q13.2	chr20:47396006-63025520(probes 14331:14513)	chr20:50046847-50269673(probes 14356:14359)	chr20:49985726-50457747(probes 14354:14362)	0.18044	   0.18044		Actual Copy Change Given	0.015887	-0.015227	0.70199	0	0.071073	1.0698	0.32536	0.45145	0.40259	-0.008792	0.11718	0.41608	0.85035	-0.0008725	0.78769	0.13789	-0.0047258	0.56978	0.0076436	1.2605	0.013023	-0.0021408	0.011481	0.5633	0.010268	0	1.2764	1.3217	0.089752	0.087339	0.48263	0.032722	0.56853	0	0.33295	-0.0020709	0.99331	1.1432	0.46452	0.067005	1.2119	0.021692	0.026813	0.016708	0.52304	0.51711	0.053785	0.40291	0.023611	0.013596	0.27071	4.053	0.014983	0.20222	0.012845	-0.0078589	1.0452	-0.0069312	1.0307	0.8865	0.66934	0.23696	0.20215	0.033852	0.019238	1.9677	2.5806	0.016581	0.010338	1.218	0.45673	0.0098078	1.1131	-0.014041	0.0011162	0.14545	-0.009068	0.2222	-0.00041579	0.34928	0.56052	0.35415	-0.014144	0.59651	0.51938	1.9075	-0.0046778	0.89186	-0.0064314	2.3301	0.76291	0.49232	0.011668	0.071704	0.0081073	0.70352	3.0256	0.10574	1.2316	-0.014726	0.0018748	0.20384	-0.016006	
Amplification Peak 9 - CN values	22q13.2	chr22:40441512-42059356(probes 14950:15006)	chr22:41641728-41752947(probes 14988:14991)	chr22:40441513-42080423(probes 14951:15008)	0.026196	  0.026196		Actual Copy Change Given	0.013766	-0.54812	0.28455	0.029961	0.0048458	1.4579	0.098825	0.47124	-0.025574	0.087142	0.10941	0.37127	1.1528	0.0081259	0.74342	0.14855	0.08299	-0.49935	-0.0080924	0.80632	0.36819	-0.00018192	0.024897	0.5812	-0.0071563	-0.48923	-0.08924	-0.025229	0.014136	0.43531	0	0.11405	0.54567	0.019882	0	-0.018024	0.071202	1.1365	0.63249	0.0732	-0.4898	-0.046083	0.023962	0.050131	0.037156	1.0758	0.016154	-0.00049012	0.048479	1.0637	-0.24998	0.031591	-0.0071904	0.61837	-0.016012	2.4592	0.025028	1.5266	1.0383	0.036202	0.028973	0.044377	0.039688	0.020175	-0.53104	-0.56479	0.29726	0.023457	-0.0040482	0.032298	1.9384	-0.012528	0.012542	0.77507	-0.85418	-0.33728	1.4253	0.022113	-0.012658	-0.077333	0.082228	0.34939	0.01102	-0.023313	1.7239	4.6538	0.016305	1.8779	0.30942	-0.8895	2.0852	0.46585	0.016053	0.055666	0.023157	0.35166	0.42073	0.2831	2.3652	-0.01734	-0.028994	0.47596	-0.1256	
Deletion Peak 1 - CN values	1p36.31 	chr1:1-6900801(probes 1:39)                         	chr1:5457034-6270931(probes 29:33)                	chr1:5086893-6344168(probes 24:36)             	0.098789	   0.098789		Actual Copy Change Given	0.0092125	-0.009255	-0.093725	0.012811	0.050566	-0.058355	0.28145	-0.0027822	-0.011047	0.02206	0.16164	-0.93898	-0.011138	-0.0049967	-0.79883	0.056487	0.75676	-0.50616	0	-0.51789	0.022659	-0.0069773	0.0066826	-1.275	-0.94517	-0.028079	-0.45389	0.42369	0.00017269	-0.060347	-0.026394	0.037261	-0.33934	0.015856	0.27592	-0.029798	0	0	0.54709	0.067496	0.7016	-0.49109	0.0049493	0.0068728	-0.53523	0.40487	-0.29552	-0.0098732	-0.60637	-0.01853	0.065315	-0.11403	-0.0085057	0.20033	-0.0091442	0.0058571	0.54269	0.80264	-1.1725	-0.0072904	0.060717	0	0.025215	0.024375	-0.54308	0.02426	0.045497	-0.0080943	-0.0038123	0.0053497	1.993	0	-0.0071671	-0.0066831	-0.85289	-0.684	-0.7338	-0.22353	0.017384	0.13885	0.0063652	0.0054942	0.020086	-0.022574	-0.081021	-0.019194	0.017059	-0.03088	0.23395	-0.88437	0.029586	-0.051392	-0.002453	-0.013479	0.01453	-0.051822	-0.25696	-0.23776	-0.022092	-0.017031	-0.0079473	0.10084	0.46996	
Deletion Peak 2 - CN values	4q34.3  	chr4:182105085-182565336(probes 3737:3772)    	chr4:182183397-182197911(probes 3750:3755)    	chr4:182114198-182471536(probes 3740:3770) 	0.054351	   0.054351		Actual Copy Change Given	-0.011972	-0.51049	-1.5	-0.0091232	0.043426	-0.00082807	-0.28824	0	0.013601	-0.0069854	-0.5982	0.38894	-0.79355	-0.010799	-0.02961	-1.329	-0.48956	0.0074853	0.0074202	-0.43123	0.0043415	-0.0046951	-0.019863	-0.70289	-0.0065023	-0.56909	0.5585	-0.00054378	0.59948	-0.062545	0.62497	0.053908	-0.02104	-0.00045744	-0.30806	0.011919	-0.045913	0.0076317	-0.5563	-0.29661	0.41898	0.015676	-0.013002	-0.027403	-0.18337	-0.58918	-0.2781	-0.007017	-0.031465	-0.0082594	-0.24812	0.0011892	0.019147	0.19722	-0.0060888	-0.073024	0.24711	-0.7153	0.027305	-0.75607	-0.30895	-0.30209	0	-0.017532	-0.56007	-0.51092	0.50001	-0.044476	-0.0097338	0.55027	-0.043551	0.00072448	0.028199	0.00093413	-0.0025862	0.1878	-0.0013696	-0.39869	-0.18546	-0.34597	-0.0010535	-0.37831	-0.0043449	-0.76002	-0.16206	-1.3603	-0.89509	-0.81284	-0.64717	-1.5	-0.57434	0.22411	-0.011586	0	0.00284	0.0079152	0.096084	0.050145	0.0078491	0.0013173	0.011688	-0.062965	-0.75856	
Deletion Peak 3 - CN values	9p21.3  	chr9:21946194-21977643(probes 8263:8274)        	chr9:21968782-21969800(probes 8268:8269)        	chr9:20820491-25036605(probes 8190:8376)     	3.6356e-61	 4.7012e-23		Actual Copy Change Given	0.0059624	-1.0382	0.27496	-0.0010606	-0.6963	-0.39206	0.0047605	-1.2735	-1.223	-0.014785	-1.0479	-1.4318	-0.40146	-0.0091252	-1.5	-0.92209	-0.76696	-1.5	-1.2253	-1.2975	-0.64939	-0.76795	-1.5	-0.62854	0.0033339	-0.57675	-1.5	-0.8471	-1.5	-0.34033	-0.37207	-1.5	-1.5	-0.68158	-0.98604	-0.70474	-0.019794	-0.52703	-0.57645	-0.73195	-0.49465	-1.5	-1.5	0.0020326	-0.66191	-0.59754	-1.2829	-0.26707	-0.65827	0	-0.083976	-0.95857	-1.2665	-0.21201	-1.3547	-0.77152	-0.1644	-0.013231	-1.1202	-0.005619	-1.2846	-0.42819	-0.18315	-0.033683	-0.53986	-0.51558	-1.1857	-0.67344	-0.48119	-1.2322	-1.0872	-0.03048	-1.4361	0.7927	-0.85347	-1.4903	-0.75142	0.097582	-1.5	-0.0079378	-1.2207	-1.5	-1.0033	-1.5	-1.5	-0.92294	-1.5	-0.91385	-1.2626	-1.5	-0.57455	-1.1046	0	-0.71162	-1.5	-1.5	-0.61577	-0.36359	-1.5	0.0069205	0	-0.37005	-0.11026	
Deletion Peak 4 - CN values	9p21.3  	chr9:21975057-22009600(probes 8275:8284)        	chr9:21987216-21989244(probes 8278:8279)        	chr9:20820491-25036605(probes 8190:8376)     	1.0907e-60	 9.8954e-18		Actual Copy Change Given	0.0059624	-1.0382	0.27496	-0.0010606	-0.6963	-0.39206	0.0047605	-0.45146	-1.223	-0.014785	0.37879	-1.4318	-0.40146	-0.0091252	-1.5	-0.92209	-1.5	-1.5	-1.2253	-1.2975	-0.64939	-0.76795	-1.5	-0.73626	0.0033339	-0.57675	-1.5	-0.8471	-1.5	-0.34033	-0.37207	-1.5	-1.5	-0.68158	-0.98604	-0.70474	-0.019794	-0.52703	-0.57645	-0.73195	-0.49465	-1.5	-1.5	0.0020326	-0.66191	-0.59754	-0.28592	-0.26707	-0.65827	0	-0.083976	-0.95857	-1.2665	-0.21201	-1.3547	-0.77152	-0.1644	-0.013231	-1.1202	-0.005619	-1.2846	-0.42819	-0.18315	-0.033683	-0.53986	-0.51558	-1.1857	-0.67344	-0.48119	-1.2322	-1.0872	-0.03048	-1.4361	0.7927	-0.85347	-1.4903	-0.75142	-1.3835	-1.5	-0.0079378	-1.2207	-1.5	-1.0033	-1.5	-1.5	-0.92294	-1.5	-0.91385	-1.2626	-1.5	-0.57455	-1.1046	0	-0.71162	-1.5	-1.5	-0.61577	-0.36359	-1.5	0.0069205	0	-0.37005	-0.11026	
Deletion Peak 5 - CN values	10q23.31	chr10:89609324-89919188(probes 9115:9128)      	chr10:89646947-89704494(probes 9118:9120)      	chr10:89622617-89705495(probes 9116:9123)   	0.11093	    0.11093		Actual Copy Change Given	-0.37084	-0.52748	-1.5	-0.0038428	0.1102	-0.41625	-0.31491	-0.43849	0.53562	0.0042632	-1.474	-0.50567	-0.4144	-0.0014972	-1.5	-0.59573	0.27849	-0.52483	-0.60728	-0.44967	-0.98452	0.00087093	0.00099518	-0.63837	-0.0020605	0.032268	-0.24685	0.0037096	-0.80087	-0.088447	-0.37624	-0.081099	-0.015633	-0.0018443	-0.30682	0.0059174	-0.024665	-0.53917	-1.1367	-0.36277	-0.73547	-0.2666	-0.88538	-0.0046545	-0.1365	-0.62345	-0.61881	0.0072547	-0.61778	-0.091414	-0.24241	-0.40245	-0.62967	-0.0059642	0.010591	-0.0066848	-0.61313	0.026717	-0.064887	-0.018822	-0.63399	-0.047301	-0.1826	-0.00015743	-0.54061	-0.51692	-0.79451	-0.012218	0.0047441	-0.0044927	-0.53653	-0.032323	-0.83143	-0.00693	0.0083881	-0.63776	-0.74085	-0.2047	-0.86396	-0.18965	-1.2137	-0.3933	-0.0070341	-0.61173	-0.64282	-0.0046013	-0.88721	0.034569	-0.63344	-0.89778	-0.55076	-0.62303	-0.14864	-0.72223	-1.5	-0.012528	0.042691	-0.17438	-0.65534	-0.015542	-0.0027598	-0.061685	-0.48262	
Deletion Peak 6 - CN values	11q23.3 	chr11:105910449-135006516(probes 10094:10298)	chr11:116879492-118610638(probes 10169:10184)	chr11:92727674-135006516(probes 9988:10298)	1.1792e-05	 1.1792e-05		Actual Copy Change Given	-0.36892	-0.0097286	-1.0394	-0.44374	-0.68432	-0.46257	-0.33622	0.45131	0.82909	-0.068249	-0.28493	0.41463	-0.87643	-0.57367	-0.76906	-0.6203	-0.01401	0	-0.35327	-0.010662	-0.33493	-0.0060098	-0.0050967	-1.2606	-0.016387	-0.61165	-0.896	0.0058151	-0.79072	-0.14945	-0.039289	-0.73862	-0.33066	-0.68453	-0.32099	-0.71137	-0.040236	-0.013467	-0.60207	-0.75301	0.33892	-0.96163	-0.078648	-0.080096	0.17788	-0.23672	-0.29166	-0.36423	-0.61316	-0.075429	-0.090589	-0.027178	0	-0.22283	-0.66166	-0.7806	-0.53381	-0.020568	-1.1416	-0.85184	-0.27467	-0.41658	-0.19678	-0.047832	-0.46496	0.12258	-0.8204	-0.35748	-0.49377	-0.62646	-0.56417	-0.038668	0	-0.81357	0.0046274	0.0052022	-0.0060623	-0.71617	-0.857	0.016128	-0.60935	-0.79211	-0.52908	0.0052358	0.55583	-0.92509	-0.88438	-0.0087059	-0.6345	-0.90347	-0.62349	-0.18209	-0.0201	-0.73554	-0.019042	0.41894	-0.62535	-0.051175	-0.64795	-0.9516	0.0056437	-0.057557	-0.47727	
