Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
miRseqhc	SKCM-TM.bestclus.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2013092300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10293:4	Aggregate_Molecular_Subtype_Clusters_2013092300	SKCM-TM.mergedcluster.txt	Merged_clusteing	Level_4	txt	gdac.broadinstitute.org_SKCM-TM.Aggregate_Molecular_Subtype_Clusters.Level_4.2013092300.0.0	yes
miRseqcnmf	SKCM-TM.bestclus.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_CNMF.Level_4.2013092300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10293:4	Aggregate_Molecular_Subtype_Clusters_2013092300	SKCM-TM.mergedcluster.txt	Merged_clusteing	Level_4	txt	gdac.broadinstitute.org_SKCM-TM.Aggregate_Molecular_Subtype_Clusters.Level_4.2013092300.0.0	yes
methlyationcnmf	SKCM-TM.bestclus.txt	gdac.broadinstitute.org_SKCM-TM.Methylation_Clustering_CNMF.Level_4.2013092300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10293:4	Aggregate_Molecular_Subtype_Clusters_2013092300	SKCM-TM.mergedcluster.txt	Merged_clusteing	Level_4	txt	gdac.broadinstitute.org_SKCM-TM.Aggregate_Molecular_Subtype_Clusters.Level_4.2013092300.0.0	yes
PredictionU133aTCGA	SKCM-TM.bestclus.txt	gdac.broadinstitute.org_SKCM-TM.RPPA_Clustering_CNMF.Level_4.2013092300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10293:4	Aggregate_Molecular_Subtype_Clusters_2013092300	SKCM-TM.mergedcluster.txt	Merged_clusteing	Level_4	txt	gdac.broadinstitute.org_SKCM-TM.Aggregate_Molecular_Subtype_Clusters.Level_4.2013092300.0.0	yes
mRNAseqcnmf	SKCM-TM.bestclus.txt	gdac.broadinstitute.org_SKCM-TM.mRNAseq_Clustering_CNMF.Level_4.2013092300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10293:4	Aggregate_Molecular_Subtype_Clusters_2013092300	SKCM-TM.mergedcluster.txt	Merged_clusteing	Level_4	txt	gdac.broadinstitute.org_SKCM-TM.Aggregate_Molecular_Subtype_Clusters.Level_4.2013092300.0.0	yes
copynumber	SKCM-TM.bestclus.txt	gdac.broadinstitute.org_SKCM-TM.CopyNumber_Clustering_CNMF.Level_4.2013092300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10293:4	Aggregate_Molecular_Subtype_Clusters_2013092300	SKCM-TM.mergedcluster.txt	Merged_clusteing	Level_4	txt	gdac.broadinstitute.org_SKCM-TM.Aggregate_Molecular_Subtype_Clusters.Level_4.2013092300.0.0	yes
PredictionU133aPhilips	SKCM-TM.bestclus.txt	gdac.broadinstitute.org_SKCM-TM.RPPA_Clustering_Consensus.Level_4.2013092300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10293:4	Aggregate_Molecular_Subtype_Clusters_2013092300	SKCM-TM.mergedcluster.txt	Merged_clusteing	Level_4	txt	gdac.broadinstitute.org_SKCM-TM.Aggregate_Molecular_Subtype_Clusters.Level_4.2013092300.0.0	yes
miRseqMaturecnmf	SKCM-TM.bestclus.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Mature_Clustering_CNMF.Level_4.2013092300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10293:4	Aggregate_Molecular_Subtype_Clusters_2013092300	SKCM-TM.mergedcluster.txt	Merged_clusteing	Level_4	txt	gdac.broadinstitute.org_SKCM-TM.Aggregate_Molecular_Subtype_Clusters.Level_4.2013092300.0.0	yes
miRseqMaturehc	SKCM-TM.bestclus.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Mature_Clustering_Consensus.Level_4.2013092300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10293:4	Aggregate_Molecular_Subtype_Clusters_2013092300	SKCM-TM.mergedcluster.txt	Merged_clusteing	Level_4	txt	gdac.broadinstitute.org_SKCM-TM.Aggregate_Molecular_Subtype_Clusters.Level_4.2013092300.0.0	yes
mRNAseqhc	SKCM-TM.bestclus.txt	gdac.broadinstitute.org_SKCM-TM.mRNAseq_Clustering_Consensus.Level_4.2013092300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10293:4	Aggregate_Molecular_Subtype_Clusters_2013092300	SKCM-TM.mergedcluster.txt	Merged_clusteing	Level_4	txt	gdac.broadinstitute.org_SKCM-TM.Aggregate_Molecular_Subtype_Clusters.Level_4.2013092300.0.0	yes
