
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering_new/SKCM-TM/4431613/SKCM-TM.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/SKCM-TM/4402018/SKCM-TM.clin.merged.picked.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=.05", "-cQ=0.25", "-MF=ALL", "-oT=SKCM-TM", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=SKCM-TM"
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/SKCM-TM/4402018/SKCM-TM.clin.merged.picked.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering_new/SKCM-TM/4431613/SKCM-TM.mergedcluster.txt"

nPatients in clinical file=242, in cluster file=267, common to both=242
[1]  10 242
[1] "CN_CNMF"
[1] 3
 1  2  3 
77 97 68 
 1  2  3 
77 97 68 
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3 
60 88 94 
 1  2  3 
60 88 94 
[1] "RPPA_CNMF"
[1] 3
 1  2  3  4 
45 50 25 37 
 1  2  3  4 
45 50 25 37 
[1] "RPPA_CHIERARCHICAL"
[1] 3
 1  2  3 
62 53 42 
 1  2  3 
62 53 42 
[1] "MRNASEQ_CNMF"
[1] 3
 1  2  3 
85 63 93 
 1  2  3 
85 63 93 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
 52 123  66 
  1   2   3 
 52 123  66 
[1] "MIRSEQ_CNMF"
[1] 3
 1  2  3 
57 97 82 
 1  2  3 
57 97 82 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
 28  75 133 
  1   2   3 
 28  75 133 
[1] "MIRSEQ_MATURE_CNMF"
[1] 3
 1  2  3 
78 96 62 
 1  2  3 
78 96 62 
[1] "MIRSEQ_MATURE_CHIERARCHICAL"
[1] 3
  1   2   3 
 70 136  30 
  1   2   3 
 70 136  30 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "DAYSTOSUBMITTEDSPECIMENDX"             
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "NEOPLASM.DISEASESTAGE"                 
 [8] "PATHOLOGY.T.STAGE"                     
 [9] "PATHOLOGY.N.STAGE"                     
[10] "PATHOLOGY.M.STAGE"                     
[11] "MELANOMA.ULCERATION"                   
[12] "MELANOMA.PRIMARY.KNOWN"                
[13] "BRESLOW.THICKNESS"                     
[14] "DCCUPLOADDATE"                         
[15] "GENDER"                                
[16] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[17] "RADIATIONTHERAPY"                      
[18] "RADIATIONS.RADIATION.REGIMENINDICATION"
[19] "BATCHNUMBER"                           

Input Data has 19 rows and 242 columns.

[1] "Batch" "19"   
[1] "Last Follow UP"
TCGA-D3-A1Q1 TCGA-D3-A1Q3 TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q7 
          NA           NA         3408           NA           NA         3687 
TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A1QA TCGA-D3-A1QB TCGA-D3-A2J6 TCGA-D3-A2J7 
          NA           NA         2326         2512           NA           NA 
TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JA TCGA-D3-A2JB TCGA-D3-A2JC TCGA-D3-A2JD 
          NA           NA         3514           NA         2126           NA 
TCGA-D3-A2JF TCGA-D3-A2JH TCGA-D3-A2JK TCGA-D3-A2JL TCGA-D3-A2JN TCGA-D3-A2JO 
        1483          951           NA         4748         1709         1547 
TCGA-D3-A2JP TCGA-D3-A3BZ TCGA-D3-A3C1 TCGA-D3-A3C3 TCGA-D3-A3C6 TCGA-D3-A3C7 
        1371         3516           NA           NA           NA         1007 
TCGA-D3-A3C8 TCGA-D3-A3CB TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3ML 
        1038         5052         2644           NA           NA           NA 
TCGA-D3-A3MO TCGA-D3-A3MR TCGA-D3-A3MU TCGA-D3-A3MV TCGA-D3-A51E TCGA-D3-A51F 
          NA         3151          819          653         4923         1329 
TCGA-D3-A51G TCGA-D3-A51H TCGA-D3-A51J TCGA-D3-A51K TCGA-D3-A51N TCGA-D3-A51R 
          NA         1221         4012          559          305         1572 
TCGA-D3-A51T TCGA-D3-A5GL TCGA-D3-A5GN TCGA-D3-A5GO TCGA-D3-A5GR TCGA-D3-A5GS 
         458         3373         4140         4195         5052          226 
TCGA-D3-A5GU TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 
        3808         4609         1663          111          194          345 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 
          98         1487           NA         3564           NA         5926 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA 
          NA           NA         3265         1861           NA           NA 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 
         713           NA          870           NA         6553          477 
TCGA-EB-A44Q TCGA-EB-A44R TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 
          28          309           NA           NA           NA           NA 
TCGA-EE-A183 TCGA-EE-A184 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20C TCGA-EE-A20F 
          NA           NA           NA         3335           NA         2399 
TCGA-EE-A20H TCGA-EE-A20I TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
          NA           NA           NA         1455           NA         1205 
TCGA-EE-A29G TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P 
          NA          979           NA         1349           NA         1716 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29W 
        1136          440         1700        10523           NA         5217 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 
          NA           NA         2401          743           NA         1787 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
        1446         1315         9567         4134         5536          686 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO 
        2717         1664         1673         2296         2766         3101 
TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 
          NA          435         1691          595         2042           NA 
TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME 
        3931           NA           NA           NA           NA           NA 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML 
          NA           NA           NA           NA         4403         6175 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS 
          NA           NA         7562           NA         3150         4150 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD 
        1265         1620         3781         3733          786          112 
TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-EE-A3J8 TCGA-ER-A193 
         813           NA          714           NA           NA           NA 
TCGA-ER-A195 TCGA-ER-A197 TCGA-ER-A198 TCGA-ER-A199 TCGA-ER-A19A TCGA-ER-A19C 
          NA           NA           NA           NA         2365           NA 
TCGA-ER-A19D TCGA-ER-A19E TCGA-ER-A19F TCGA-ER-A19G TCGA-ER-A19H TCGA-ER-A19J 
          NA           NA           NA         8180           NA           NA 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A19O TCGA-ER-A19P TCGA-ER-A19Q 
          NA           NA         1340           NA           NA           NA 
TCGA-ER-A1A1 TCGA-ER-A2NC TCGA-ER-A2NF TCGA-ER-A2NG TCGA-ER-A2NH TCGA-ER-A3ES 
        2433           NA          497          951          975           NA 
TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FR-A3YO TCGA-FR-A44A TCGA-FS-A1YW 
        2443         1010         2448           NA         4885           NA 
TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1Z7 
          NA           NA           NA           NA           NA           NA 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZF 
          NA           NA           NA           NA         1225           NA 
TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZP 
          NA           NA           NA           NA         3080           NA 
TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
          NA           NA         4525         1617           NA         1505 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F4 TCGA-FS-A4F5 
          NA           NA         2366           NA           NA           NA 
TCGA-FS-A4F8 TCGA-FS-A4F9 TCGA-FS-A4FB TCGA-FS-A4FC TCGA-FS-A4FD TCGA-FW-A3I3 
          NA          378           NA         1504         2369            6 
TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-FW-A3TV TCGA-GF-A3OT TCGA-GF-A4EO TCGA-GN-A261 
         699         1446           NA          301          220           NA 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 
        3664           NA         2577           NA           NA           NA 
TCGA-GN-A26A TCGA-GN-A26D 
          NA         1204 
Variable 1:'AGE':	nDistinctValues=66,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=113,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=122,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'DAYSTOSUBMITTEDSPECIMENDX':	nDistinctValues=174,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'NEOPLASM.DISEASESTAGE':	nDistinctValues=14,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.T.STAGE':	nDistinctValues=15,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.N.STAGE':	nDistinctValues=10,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'PATHOLOGY.M.STAGE':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MELANOMA.ULCERATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MELANOMA.PRIMARY.KNOWN':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'BRESLOW.THICKNESS':	nDistinctValues=102,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 14:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=27,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 17:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 18:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 19:'BATCH.NUMBER':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                     "PRIMARY.SITE.OF.DISEASE"
 [3] "NEOPLASM.DISEASESTAGE"   "PATHOLOGY.T.STAGE"      
 [5] "PATHOLOGY.N.STAGE"       "PATHOLOGY.M.STAGE"      
 [7] "MELANOMA.ULCERATION"     "MELANOMA.PRIMARY.KNOWN" 
 [9] "BRESLOW.THICKNESS"       "GENDER"                 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "4"          
[1] "PATHOLOGY.N" "5"          
Output Data has 242 columns, 2 survival variables, and 10 non-survival variables.
AGE, nv=66, binary=FALSE, numeric=TRUE
PRIMARY.SITE.OF.DISEASE, nv=4, binary=FALSE, numeric=FALSE
NEOPLASM.DISEASESTAGE, nv=14, binary=FALSE, numeric=FALSE
PATHOLOGY.T.STAGE, nv=5, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
T0 T1 T2 T3 T4 
14 28 54 46 50 
[1] "table(vv)"
vv
T0+T1    T2    T3    T4 
   42    54    46    50 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
T0 T1 T2 T3 T4 
14 28 54 46 50 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


T0+T1    T2    T3    T4 
   42    54    46    50 
PATHOLOGY.N.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
127  39  28  28 
[1] "table(vv)"
vv
 N0  N1  N2  N3 
127  39  28  28 
$ClinVariableName
[1] "PATHOLOGY.N.STAGE"

$Table
vv
 N0  N1  N2  N3 
127  39  28  28 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 N0  N1  N2  N3 
127  39  28  28 
PATHOLOGY.M.STAGE, nv=5, binary=FALSE, numeric=FALSE
MELANOMA.ULCERATION, nv=2, binary=FALSE, numeric=FALSE
MELANOMA.PRIMARY.KNOWN, nv=2, binary=FALSE, numeric=FALSE
BRESLOW.THICKNESS, nv=102, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = CN_CNMF
D1V1, survival
          sevent
clus2       0  1
  subtype1 33 33
  subtype2 50 34
  subtype3 26 34
subtype1 subtype2 subtype3 
      66       84       60 
subtype1 subtype2 subtype3 
      33       34       34 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A3C6 TCGA-D3-A3C7 TCGA-D3-A3ML TCGA-D3-A3MO TCGA-D3-A3MU 
       16.47        15.25        33.11         6.28         9.30        13.55 
TCGA-D3-A3MV TCGA-D3-A51K TCGA-D3-A5GN TCGA-D3-A5GO TCGA-D3-A5GS TCGA-D3-A5GU 
        5.39        17.72        52.04        47.87         6.97        23.11 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I1 TCGA-DA-A1I5 TCGA-DA-A1I7 
        2.86        48.79        35.80        39.19        44.52        36.69 
TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A3F3 TCGA-EB-A44R TCGA-EE-A17Z TCGA-EE-A184 
       25.15         4.93         7.00         0.20         6.31         5.13 
TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A20I TCGA-EE-A29D TCGA-EE-A29E 
        4.27        36.07         9.24         1.18        11.15        38.63 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29R TCGA-EE-A29V TCGA-EE-A2A6 TCGA-EE-A2GB 
        1.08        27.12         8.84         2.43         8.94        39.39 
TCGA-EE-A2GJ TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GS TCGA-EE-A2GU TCGA-EE-A3AG 
       19.43        28.31        33.83        13.02         8.68        15.95 
TCGA-ER-A19C TCGA-ER-A19D TCGA-ER-A19G TCGA-ER-A19H TCGA-ER-A19L TCGA-FR-A3YN 
        3.81         3.52       114.15        34.88        12.99         5.95 
TCGA-FS-A1Z3 TCGA-FS-A1ZA TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZH TCGA-FS-A1ZK 
       14.24         7.27        19.53        11.08        30.84        12.89 
TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F4 TCGA-FS-A4F5 
       40.64         8.68         0.82         5.23         7.36        28.73 
TCGA-FS-A4FD TCGA-FW-A3I3 TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
        2.27         0.20        31.33        16.21        12.16        14.70 

$subtype2
TCGA-D3-A1Q3 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1QA TCGA-D3-A1QB 
        8.52        70.16        98.76        28.08        31.40        68.09 
TCGA-D3-A2J7 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JA TCGA-D3-A2JB TCGA-D3-A2JD 
       85.32         8.38        21.14        88.50        68.25        11.41 
TCGA-D3-A2JH TCGA-D3-A2JK TCGA-D3-A2JL TCGA-D3-A2JO TCGA-D3-A3BZ TCGA-D3-A3C8 
       25.38         6.35        77.00        49.25        99.55        34.13 
TCGA-D3-A3CB TCGA-D3-A3MR TCGA-D3-A51F TCGA-D3-A51H TCGA-D3-A51R TCGA-D3-A5GL 
       82.03       103.59        42.71        15.09        20.48        95.38 
TCGA-D9-A3Z1 TCGA-DA-A1I0 TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F8 TCGA-EE-A17X 
        4.01        10.03        22.36        19.36        14.83        11.57 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A20C TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29G 
        1.35        12.20         4.34         5.13        37.97         8.55 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
        9.47        12.03         8.12        11.31        25.28        23.90 
TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GK 
       10.13        17.98        34.92        21.17         3.91        16.01 
TCGA-EE-A2GL TCGA-EE-A2GR TCGA-EE-A2GT TCGA-EE-A2M5 TCGA-EE-A2MJ TCGA-EE-A3AA 
       10.88         1.15         9.67         8.84        63.42       124.31 
TCGA-EE-A3AC TCGA-EE-A3J8 TCGA-ER-A193 TCGA-ER-A195 TCGA-ER-A197 TCGA-ER-A198 
       25.84        16.14        31.40        18.64        12.95        38.37 
TCGA-ER-A199 TCGA-ER-A19A TCGA-ER-A19P TCGA-ER-A1A1 TCGA-ER-A2NC TCGA-ER-A2NG 
        5.72        76.41        34.68        78.44        12.00        12.62 
TCGA-ER-A2NH TCGA-ER-A3ET TCGA-FR-A44A TCGA-FS-A1YY TCGA-FS-A1Z4 TCGA-FS-A1ZB 
       11.74         6.58        72.16        11.05        15.52         3.39 
TCGA-FS-A1ZP TCGA-FS-A1ZW TCGA-FS-A4F0 TCGA-FS-A4F8 TCGA-FS-A4F9 TCGA-FS-A4FC 
       52.11        27.39        53.82        14.20        10.78         6.41 
TCGA-FW-A3R5 TCGA-GF-A3OT TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A265 TCGA-GN-A266 
        1.02         9.90        15.35        24.85        84.72        10.09 

$subtype3
TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2JC TCGA-D3-A2JF 
      111.09        32.55        22.55        10.26        69.90        30.87 
TCGA-D3-A2JN TCGA-D3-A2JP TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A51E 
       56.19        45.07        61.38        13.32        24.00        80.22 
TCGA-D3-A51J TCGA-D3-A51N TCGA-D3-A51T TCGA-D3-A5GR TCGA-DA-A1HY TCGA-DA-A1I2 
       41.13         8.88        13.94         2.01        51.12        13.68 
TCGA-DA-A1I4 TCGA-DA-A1IC TCGA-DA-A3F5 TCGA-EB-A44Q TCGA-EE-A181 TCGA-EE-A29A 
        9.99         6.64        17.56         0.20         1.12         7.96 
TCGA-EE-A29H TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29W TCGA-EE-A29X TCGA-EE-A2A5 
        4.41         9.99         6.48         8.68         8.09         9.67 
TCGA-EE-A2GO TCGA-EE-A2MH TCGA-EE-A2MK TCGA-EE-A3AF TCGA-ER-A19E TCGA-ER-A19F 
       30.84         7.96       111.78        13.81        11.90        11.11 
TCGA-ER-A19J TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A19Q TCGA-ER-A2NF TCGA-ER-A3ES 
        4.18        28.64        42.84         9.57        13.05         9.04 
TCGA-ER-A3PL TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1Z0 TCGA-FS-A1Z7 TCGA-FS-A1ZC 
        1.71        64.47         3.45        23.80         7.30        20.38 
TCGA-FS-A1ZD TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZM TCGA-FS-A1ZQ TCGA-FS-A1ZR 
        8.22         7.17        12.92        47.38         8.68         8.81 
TCGA-FS-A1ZS TCGA-FS-A4F2 TCGA-FS-A4FB TCGA-FW-A3TU TCGA-GF-A4EO TCGA-GN-A268 
       49.15         3.22         5.98         0.13         7.23        15.39 

subtype1 subtype2 subtype3 
    0.20     1.02     0.13 
subtype1 subtype2 subtype3 
  114.15   124.31   111.78 
subtype1 subtype2 subtype3 
  13.005   17.060   11.505 
[1] "0.2 - 114.2 (13.0)" "1.0 - 124.3 (17.1)" "0.1 - 111.8 (11.5)"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [25] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [31] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [37] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [49] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
 [55] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [61] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [67] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [85] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [91] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [97] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[103] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[115] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[121] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[145] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[151] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[157] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[163] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[169] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[175] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[181] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[187] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[193] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[199] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[205] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [25] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [31] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [37] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [49] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
 [55] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [61] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [67] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [85] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [91] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [97] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[103] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[115] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[121] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[145] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[151] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[157] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[163] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[169] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[175] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[181] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[187] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[193] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[199] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[205] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [25] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [31] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [37] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [49] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
 [55] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [61] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [67] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [85] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [91] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [97] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[103] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[115] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[121] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[145] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[151] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[157] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[163] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[169] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[175] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[181] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[187] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[193] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[199] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[205] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
D1V2, survival
          sevent
clus2       0  1
  subtype1 38 38
  subtype2 54 41
  subtype3 30 35
subtype1 subtype2 subtype3 
      76       95       65 
subtype1 subtype2 subtype3 
      38       41       35 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A3C6 TCGA-D3-A3C7 TCGA-D3-A3ML TCGA-D3-A3MO TCGA-D3-A3MU 
         504         1765         1007          421          283          819 
TCGA-D3-A3MV TCGA-D3-A51K TCGA-D3-A5GN TCGA-D3-A5GO TCGA-D3-A5GS TCGA-D3-A5GU 
         653          559         4140         4195          226         3808 
TCGA-D9-A148 TCGA-D9-A1JX TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I1 
        4609          194           98         1487         1096         5926 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A3F3 TCGA-EB-A44R 
        3265         1861         1640         2005          319          309 
TCGA-EE-A17Z TCGA-EE-A184 TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A20I 
         263         2073          150         3335         5118          412 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29R TCGA-EE-A29V 
         425         1205           78         1349          440          787 
TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GJ TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GS 
        1787         1446         2717         2296         2766         1691 
TCGA-EE-A2GU TCGA-EE-A2M7 TCGA-EE-A2MD TCGA-EE-A2MN TCGA-EE-A2MS TCGA-EE-A3AB 
        2042          876         1438         1446         4150         3733 
TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19C TCGA-ER-A19D 
         112          813          714         4221         1487          383 
TCGA-ER-A19G TCGA-ER-A19H TCGA-ER-A19L TCGA-FR-A3YN TCGA-FS-A1Z3 TCGA-FS-A1ZA 
        8180         4634         3987         2448          636          842 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZH TCGA-FS-A1ZK TCGA-FS-A1ZT TCGA-FS-A1ZU 
        1225          470          995          728         1617          808 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F4 TCGA-FS-A4F5 TCGA-FS-A4FD TCGA-FW-A3I3 
         823          822         2028          874         2369            6 
TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A26A TCGA-GN-A26D 
        3587         1959          988         1204 

$subtype2
TCGA-D3-A1Q3 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1QA TCGA-D3-A1QB 
         507         2184         3687          854         2326         2512 
TCGA-D3-A2J7 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JA TCGA-D3-A2JB TCGA-D3-A2JD 
        3136         1992          723         3514         5110          361 
TCGA-D3-A2JH TCGA-D3-A2JK TCGA-D3-A2JL TCGA-D3-A2JO TCGA-D3-A3BZ TCGA-D3-A3C8 
         951          368         4748         1547         3516         1038 
TCGA-D3-A3CB TCGA-D3-A3MR TCGA-D3-A51F TCGA-D3-A51H TCGA-D3-A51R TCGA-D3-A5GL 
        5052         3151         1329         1221         1572         3373 
TCGA-D9-A3Z1 TCGA-DA-A1I0 TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F8 TCGA-EE-A17X 
         345          620          713          870          477          907 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A20C TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29G 
         447          817         4600         2399         1455         2191 
TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 
         565         1716         1136         1424         2401          743 
TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GK 
        1315         9567         4134         5536          686         1664 
TCGA-EE-A2GL TCGA-EE-A2GR TCGA-EE-A2GT TCGA-EE-A2M5 TCGA-EE-A2M8 TCGA-EE-A2MC 
        1673          435          595          659          601         1871 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2ML TCGA-EE-A2MM 
        3141         3138         6224         2927         6175         5106 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AC 
        1315         3150         1265         1620         3781          786 
TCGA-EE-A3J8 TCGA-ER-A193 TCGA-ER-A195 TCGA-ER-A197 TCGA-ER-A198 TCGA-ER-A199 
        1044          955         1078          423         1543          279 
TCGA-ER-A19A TCGA-ER-A19P TCGA-ER-A1A1 TCGA-ER-A2NC TCGA-ER-A2NG TCGA-ER-A2NH 
        2365         4930         2433         1339          951          975 
TCGA-ER-A3ET TCGA-FR-A44A TCGA-FS-A1YY TCGA-FS-A1Z4 TCGA-FS-A1ZB TCGA-FS-A1ZP 
        2443         4885         6953          854         1486         2273 
TCGA-FS-A1ZW TCGA-FS-A4F0 TCGA-FS-A4F8 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3R5 
        1505         2366         5318          378         1504          699 
TCGA-GF-A3OT TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A265 TCGA-GN-A266 
         301         2324         3664         2577          307 

$subtype3
TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A1Q9 TCGA-D3-A2J6 TCGA-D3-A2JC TCGA-D3-A2JF 
        3408         3423          961         1320         2126         1483 
TCGA-D3-A2JN TCGA-D3-A2JP TCGA-D3-A3CC TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A51E 
        1709         1371         2644         1832          746         4923 
TCGA-D3-A51J TCGA-D3-A51N TCGA-D3-A51T TCGA-D3-A5GR TCGA-D9-A149 TCGA-D9-A1JW 
        4012          305          458         5052         1663          111 
TCGA-DA-A1HY TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1IC TCGA-DA-A3F5 TCGA-EB-A44Q 
        3564         5370         1093         2071         6553           28 
TCGA-EE-A181 TCGA-EE-A29A TCGA-EE-A29H TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29W 
        1026         1926          979         1700        10523         5217 
TCGA-EE-A29X TCGA-EE-A2A5 TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2M6 TCGA-EE-A2MH 
         545         1194         3101          422         3931          516 
TCGA-EE-A2MK TCGA-EE-A2MP TCGA-EE-A3AF TCGA-ER-A19E TCGA-ER-A19F TCGA-ER-A19J 
        4403         7562          420          396          802          195 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A19Q TCGA-ER-A2NF TCGA-ER-A3ES TCGA-ER-A3PL 
        1857         1340         1548          497         7514         1010 
TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1Z0 TCGA-FS-A1Z7 TCGA-FS-A1ZC TCGA-FS-A1ZD 
        6598         1478         6163          236        10870         1628 
TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZM TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS 
         295         1441         3080         4062          347         4525 
TCGA-FS-A4F2 TCGA-FS-A4FB TCGA-FW-A3TU TCGA-GF-A4EO TCGA-GN-A268 
        1525          813         1446          220         1909 

subtype1 subtype2 subtype3 
       6      279       28 
subtype1 subtype2 subtype3 
    8180     9567    10870 
subtype1 subtype2 subtype3 
    1215     1543     1548 
[1] "6.0 - 8180.0 (1215.0)"   "279.0 - 9567.0 (1543.0)"
[3] "28.0 - 10870.0 (1548.0)"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [25] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [31] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [37] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [49] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [61] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
 [67] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
 [73] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [79] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
 [85] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [91] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [97] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[103] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[109] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[121] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[127] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[133] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[139] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[145] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[151] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[157] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[169] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[175] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[181] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[187] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[193] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[199] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[205] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[211] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[217] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[223] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[229] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[235] "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [25] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [31] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [37] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [49] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [61] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
 [67] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
 [73] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [79] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
 [85] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [91] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [97] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[103] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[109] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[121] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[127] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[133] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[139] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[145] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[151] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[157] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[169] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[175] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[181] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[187] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[193] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[199] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[205] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[211] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[217] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[223] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[229] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[235] "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [25] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [31] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [37] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [49] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [61] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
 [67] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
 [73] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [79] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
 [85] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [91] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [97] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[103] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[109] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[121] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[127] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[133] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[139] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[145] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[151] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[157] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[169] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[175] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[181] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[187] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[193] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[199] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[205] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[211] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[217] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[223] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[229] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[235] "subtype1" "subtype1"
D1V3, continuous
          vv
clus       DISTANT METASTASIS PRIMARY TUMOR
  subtype1                 17             0
  subtype2                  7             0
  subtype3                  8             1
          vv
clus       REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE REGIONAL LYMPH NODE
  subtype1                                        15                  45
  subtype2                                        22                  67
  subtype3                                        13                  46
D1V4, multiclass
          vv
clus       I OR II NOS STAGE 0 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  subtype1           0       1       4        4        8        7         2
  subtype2           3       2      12        3        9        6         6
  subtype3           6       1       4        3        5        4         2
          vv
clus       STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  subtype1         3         5         3          4         12          9
  subtype2         7         2         8          5          4         19
  subtype3         2         2         9          1          5         11
          vv
clus       STAGE IV
  subtype1        5
  subtype2        2
  subtype3        3
D1V5, multiclass
          vv
clus       T0+T1 T2 T3 T4
  subtype1    15 17 16 14
  subtype2    13 22 21 23
  subtype3    14 15  9 13
D1V6, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 38 13 11  7
  subtype2 55 14  9 13
  subtype3 34 12  8  8
D1V7, multiclass
          vv
clus       M0 M1 M1A M1B M1C
  subtype1 64  1   0   1   4
  subtype2 89  1   1   1   0
  subtype3 60  1   1   0   1
D1V8, multiclass
D1V9, binary
          cls
clus        0  1
  subtype1 32 21
  subtype2 39 23
  subtype3 21 17
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   32   21
  subtype2   39   23
  subtype3   21   17
     clus
vv    subtype1 subtype2 subtype3
  NO        32       39       21
  YES       21       23       17
D1V10, binary
          cls
clus        0  1
  subtype1 10 67
  subtype2 10 87
  subtype3 10 58
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   10   67
  subtype2   10   87
  subtype3   10   58
     clus
vv    subtype1 subtype2 subtype3
  NO        10       10       10
  YES       67       87       58
D1V11, continuous
D1V12, binary
          cls
clus        0  1
  subtype1 32 45
  subtype2 31 66
  subtype3 32 36
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   32   45
  subtype2   31   66
  subtype3   32   36
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       32       31       32
  MALE         45       66       36

Clustering(2) Variable = METHLYATION_CNMF
D2V1, survival
          sevent
clus2       0  1
  subtype1 22 32
  subtype2 40 35
  subtype3 47 34
subtype1 subtype2 subtype3 
      54       75       81 
subtype1 subtype2 subtype3 
      32       35       34 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A2J6 TCGA-D3-A3C7 TCGA-D3-A3CC 
       16.47       111.09        32.55        10.26        33.11        61.38 
TCGA-D3-A3CE TCGA-D3-A3MO TCGA-D3-A51K TCGA-DA-A1I2 TCGA-DA-A1IA TCGA-DA-A3F3 
       13.32         9.30        17.72        13.68         4.93         7.00 
TCGA-EB-A44R TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29D 
        0.20         6.31         1.35        36.07         9.24        11.15 
TCGA-EE-A29R TCGA-EE-A29W TCGA-EE-A2A5 TCGA-EE-A2GN TCGA-EE-A2GR TCGA-EE-A2GS 
        8.84         8.68         9.67        33.83         1.15        13.02 
TCGA-EE-A3AC TCGA-ER-A19C TCGA-ER-A19D TCGA-ER-A19E TCGA-ER-A19L TCGA-ER-A2NC 
       25.84         3.81         3.52        11.90        12.99        12.00 
TCGA-ER-A2NF TCGA-ER-A3ES TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FS-A1YX TCGA-FS-A1Z0 
       13.05         9.04         6.58         1.71         3.45        23.80 
TCGA-FS-A1Z3 TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZJ TCGA-FS-A1ZK 
       14.24         7.30         8.22        19.53        12.92        12.89 
TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZY 
       52.11         8.81        49.15        40.64         8.68         0.82 
TCGA-FS-A4FB TCGA-FS-A4FD TCGA-FW-A3I3 TCGA-FW-A3TU TCGA-GN-A267 TCGA-GN-A26D 
        5.98         2.27         0.20         0.13        16.21        14.70 

$subtype2
TCGA-D3-A1Q3 TCGA-D3-A1Q9 TCGA-D3-A1QA TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A2JL 
        8.52        22.55        31.40        30.87         6.35        77.00 
TCGA-D3-A3C6 TCGA-D3-A3ML TCGA-D3-A3MU TCGA-D3-A3MV TCGA-D3-A51E TCGA-D3-A51J 
       15.25         6.28        13.55         5.39        80.22        41.13 
TCGA-D3-A51R TCGA-D3-A51T TCGA-D3-A5GL TCGA-D3-A5GN TCGA-D3-A5GO TCGA-D3-A5GS 
       20.48        13.94        95.38        52.04        47.87         6.97 
TCGA-D3-A5GU TCGA-DA-A1HV TCGA-DA-A1HY TCGA-DA-A1I1 TCGA-DA-A1I7 TCGA-DA-A1I8 
       23.11        48.79        51.12        39.19        36.69        25.15 
TCGA-DA-A1IC TCGA-EB-A44Q TCGA-EE-A17X TCGA-EE-A184 TCGA-EE-A185 TCGA-EE-A20C 
        6.64         0.20        11.57         5.13         4.27         4.34 
TCGA-EE-A20I TCGA-EE-A29A TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29P TCGA-EE-A29Q 
        1.18         7.96         4.41         1.08        12.03         8.12 
TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A2 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GJ 
        9.99         8.09        23.90        39.39        10.13        19.43 
TCGA-EE-A2GM TCGA-EE-A2GO TCGA-EE-A2GU TCGA-EE-A2MK TCGA-EE-A3AF TCGA-EE-A3AG 
       28.31        30.84         8.68       111.78        13.81        15.95 
TCGA-EE-A3J8 TCGA-ER-A193 TCGA-ER-A198 TCGA-ER-A19F TCGA-ER-A19G TCGA-ER-A19H 
       16.14        31.40        38.37        11.11       114.15        34.88 
TCGA-ER-A19J TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YY TCGA-FS-A1ZA TCGA-FS-A1ZC 
        4.18         5.95        64.47        11.05         7.27        20.38 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZM TCGA-FS-A1ZQ TCGA-FS-A1ZZ TCGA-FS-A4F0 
       11.08         7.17        47.38         8.68         5.23        53.82 
TCGA-FS-A4F2 TCGA-FS-A4F4 TCGA-FS-A4F5 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3R5 
        3.22         7.36        28.73        10.78         6.41         1.02 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A268 
       24.85        31.33        15.39 

$subtype3
TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1QB TCGA-D3-A2J7 TCGA-D3-A2J8 
       70.16        98.76        28.08        68.09        85.32         8.38 
TCGA-D3-A2J9 TCGA-D3-A2JA TCGA-D3-A2JB TCGA-D3-A2JC TCGA-D3-A2JD TCGA-D3-A2JH 
       21.14        88.50        68.25        69.90        11.41        25.38 
TCGA-D3-A2JN TCGA-D3-A2JO TCGA-D3-A2JP TCGA-D3-A3BZ TCGA-D3-A3C8 TCGA-D3-A3CB 
       56.19        49.25        45.07        99.55        34.13        82.03 
TCGA-D3-A3CF TCGA-D3-A3MR TCGA-D3-A51F TCGA-D3-A51H TCGA-D3-A51N TCGA-D3-A5GR 
       24.00       103.59        42.71        15.09         8.88         2.01 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1I0 TCGA-DA-A1I4 TCGA-DA-A1I5 
        4.01         2.86        35.80        10.03         9.99        44.52 
TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A181 TCGA-EE-A183 
       22.36        19.36        17.56        14.83         1.12        12.20 
TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29G TCGA-EE-A29M TCGA-EE-A29N 
        5.13        37.97        38.63         8.55        27.12         9.47 
TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A6 TCGA-EE-A2GD 
        6.48         2.43        11.31        25.28         8.94        17.98 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GT 
       34.92        21.17         3.91        16.01        10.88         9.67 
TCGA-EE-A2M5 TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A3AA TCGA-ER-A195 TCGA-ER-A197 
        8.84         7.96        63.42       124.31        18.64        12.95 
TCGA-ER-A199 TCGA-ER-A19A TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A19P TCGA-ER-A19Q 
        5.72        76.41        28.64        42.84        34.68         9.57 
TCGA-ER-A1A1 TCGA-ER-A2NG TCGA-ER-A2NH TCGA-FR-A44A TCGA-FS-A1Z4 TCGA-FS-A1ZB 
       78.44        12.62        11.74        72.16        15.52         3.39 
TCGA-FS-A1ZH TCGA-FS-A1ZW TCGA-FS-A4F8 TCGA-GF-A3OT TCGA-GF-A4EO TCGA-GN-A261 
       30.84        27.39        14.20         9.90         7.23        15.35 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A26A 
       84.72        10.09        12.16 

subtype1 subtype2 subtype3 
    0.13     0.20     1.12 
subtype1 subtype2 subtype3 
  111.09   114.15   124.31 
subtype1 subtype2 subtype3 
  10.705   13.940   18.640 
[1] "0.1 - 111.1 (10.7)" "0.2 - 114.2 (13.9)" "1.1 - 124.3 (18.6)"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
  [7] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [31] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [37] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [43] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [55] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [61] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [67] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [73] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [79] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [85] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [91] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[103] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[109] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[121] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[127] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[139] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[157] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[163] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[169] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[175] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[181] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[193] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[199] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[205] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
  [7] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [31] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [37] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [43] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [55] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [61] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [67] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [73] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [79] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [85] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [91] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[103] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[109] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[121] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[127] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[139] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[157] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[163] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[169] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[175] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[181] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[193] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[199] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[205] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
  [7] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [31] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [37] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [43] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [55] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [61] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [67] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [73] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [79] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [85] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [91] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[103] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[109] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[121] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[127] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[139] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[157] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[163] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[169] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[175] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[181] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[193] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[199] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[205] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
D2V2, survival
          sevent
clus2       0  1
  subtype1 24 35
  subtype2 46 40
  subtype3 52 39
subtype1 subtype2 subtype3 
      59       86       91 
subtype1 subtype2 subtype3 
      35       40       39 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A2J6 TCGA-D3-A3C7 TCGA-D3-A3CC 
         504         3408         3423         1320         1007         2644 
TCGA-D3-A3CE TCGA-D3-A3MO TCGA-D3-A51K TCGA-DA-A1I2 TCGA-DA-A1IA TCGA-DA-A3F3 
        1832          283          559         5370         2005          319 
TCGA-EB-A44R TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29D 
         309          263          447         3335         5118          425 
TCGA-EE-A29R TCGA-EE-A29W TCGA-EE-A2A5 TCGA-EE-A2GN TCGA-EE-A2GP TCGA-EE-A2GR 
         440         5217         1194         2766          422          435 
TCGA-EE-A2GS TCGA-EE-A2M7 TCGA-EE-A2MI TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AC 
        1691          876         6224         4150         1265          786 
TCGA-ER-A19C TCGA-ER-A19D TCGA-ER-A19E TCGA-ER-A19L TCGA-ER-A2NC TCGA-ER-A2NF 
        1487          383          396         3987         1339          497 
TCGA-ER-A3ES TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FS-A1YX TCGA-FS-A1Z0 TCGA-FS-A1Z3 
        7514         2443         1010         1478         6163          636 
TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP 
         236         1628         1225         1441          728         2273 
TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FS-A4FB 
         347         4525         1617          808          823          813 
TCGA-FS-A4FD TCGA-FW-A3I3 TCGA-FW-A3TU TCGA-GN-A267 TCGA-GN-A26D 
        2369            6         1446         1959         1204 

$subtype2
TCGA-D3-A1Q3 TCGA-D3-A1Q9 TCGA-D3-A1QA TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A2JL 
         507          961         2326         1483          368         4748 
TCGA-D3-A3C6 TCGA-D3-A3ML TCGA-D3-A3MU TCGA-D3-A3MV TCGA-D3-A51E TCGA-D3-A51J 
        1765          421          819          653         4923         4012 
TCGA-D3-A51R TCGA-D3-A51T TCGA-D3-A5GL TCGA-D3-A5GN TCGA-D3-A5GO TCGA-D3-A5GS 
        1572          458         3373         4140         4195          226 
TCGA-D3-A5GU TCGA-D9-A148 TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HY TCGA-DA-A1I1 
        3808         4609          194         1487         3564         5926 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IC TCGA-EB-A44Q TCGA-EE-A17X TCGA-EE-A184 
        1861         1640         2071           28          907         2073 
TCGA-EE-A185 TCGA-EE-A20C TCGA-EE-A20I TCGA-EE-A29A TCGA-EE-A29H TCGA-EE-A29L 
         150         4600          412         1926          979           78 
TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29X TCGA-EE-A2A2 TCGA-EE-A2GB 
        1716         1136         1700          545          743         1446 
TCGA-EE-A2GC TCGA-EE-A2GJ TCGA-EE-A2GM TCGA-EE-A2GO TCGA-EE-A2GU TCGA-EE-A2M6 
        1315         2717         2296         3101         2042         3931 
TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ 
        4403         6175         5106         1446         7562         1315 
TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-EE-A3J8 
         112          813          420          714         4221         1044 
TCGA-ER-A193 TCGA-ER-A198 TCGA-ER-A19F TCGA-ER-A19G TCGA-ER-A19H TCGA-ER-A19J 
         955         1543          802         8180         4634          195 
TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YY TCGA-FS-A1ZA TCGA-FS-A1ZC TCGA-FS-A1ZF 
        2448         6598         6953          842        10870          470 
TCGA-FS-A1ZG TCGA-FS-A1ZM TCGA-FS-A1ZQ TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 
         295         3080         4062          822         2366         1525 
TCGA-FS-A4F4 TCGA-FS-A4F5 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FW-A3R5 TCGA-GN-A262 
        2028          874          378         1504          699         3664 
TCGA-GN-A264 TCGA-GN-A268 
        3587         1909 

$subtype3
TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A1QB TCGA-D3-A2J7 TCGA-D3-A2J8 
        2184         3687          854         2512         3136         1992 
TCGA-D3-A2J9 TCGA-D3-A2JA TCGA-D3-A2JB TCGA-D3-A2JC TCGA-D3-A2JD TCGA-D3-A2JH 
         723         3514         5110         2126          361          951 
TCGA-D3-A2JN TCGA-D3-A2JO TCGA-D3-A2JP TCGA-D3-A3BZ TCGA-D3-A3C8 TCGA-D3-A3CB 
        1709         1547         1371         3516         1038         5052 
TCGA-D3-A3CF TCGA-D3-A3MR TCGA-D3-A51F TCGA-D3-A51H TCGA-D3-A51N TCGA-D3-A5GR 
         746         3151         1329         1221          305         5052 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1I0 
        1663          111          345           98         1096          620 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F5 TCGA-DA-A3F8 
        1093         3265          713          870         6553          477 
TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29G 
        1026          817         2399         1455         1205         2191 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A2A0 TCGA-EE-A2A1 
        1349          565        10523          787         1424         2401 
TCGA-EE-A2A6 TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GK 
        1787         9567         4134         5536          686         1664 
TCGA-EE-A2GL TCGA-EE-A2GT TCGA-EE-A2M5 TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD 
        1673          595          659          601         1871         1438 
TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2MR TCGA-EE-A2MU 
        3141         3138          516         2927         3150         1620 
TCGA-EE-A3AA TCGA-EE-A3AB TCGA-ER-A195 TCGA-ER-A197 TCGA-ER-A199 TCGA-ER-A19A 
        3781         3733         1078          423          279         2365 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A19P TCGA-ER-A19Q TCGA-ER-A1A1 TCGA-ER-A2NG 
        1857         1340         4930         1548         2433          951 
TCGA-ER-A2NH TCGA-FR-A44A TCGA-FS-A1Z4 TCGA-FS-A1ZB TCGA-FS-A1ZH TCGA-FS-A1ZW 
         975         4885          854         1486          995         1505 
TCGA-FS-A4F8 TCGA-GF-A3OT TCGA-GF-A4EO TCGA-GN-A261 TCGA-GN-A265 TCGA-GN-A266 
        5318          301          220         2324         2577          307 
TCGA-GN-A26A 
         988 

subtype1 subtype2 subtype3 
       6       28       98 
subtype1 subtype2 subtype3 
    7514    10870    10523 
subtype1 subtype2 subtype3 
    1265     1606     1486 
[1] "6.0 - 7514.0 (1265.0)"   "28.0 - 10870.0 (1606.0)"
[3] "98.0 - 10523.0 (1486.0)"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
  [7] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [31] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [37] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [43] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [61] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [67] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [79] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [91] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[109] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[121] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[139] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[151] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[163] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[169] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[175] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[181] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[187] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[193] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[199] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[205] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[211] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[217] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[223] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[229] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[235] "subtype3" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
  [7] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [31] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [37] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [43] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [61] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [67] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [79] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [91] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[109] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[121] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[139] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[151] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[163] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[169] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[175] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[181] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[187] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[193] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[199] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[205] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[211] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[217] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[223] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[229] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[235] "subtype3" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
  [7] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [31] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [37] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [43] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [61] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [67] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [79] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [91] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[109] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[121] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[139] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[151] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[163] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[169] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[175] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[181] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[187] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[193] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[199] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[205] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[211] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[217] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[223] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[229] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[235] "subtype3" "subtype1"
D2V3, continuous
          vv
clus       DISTANT METASTASIS PRIMARY TUMOR
  subtype1                 14             1
  subtype2                 14             0
  subtype3                  4             0
          vv
clus       REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE REGIONAL LYMPH NODE
  subtype1                                        13                  32
  subtype2                                        20                  54
  subtype3                                        17                  72
D2V4, multiclass
          vv
clus       I OR II NOS STAGE 0 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  subtype1           1       2       4        1        6        8         2
  subtype2           6       1       5        6        9        4         5
  subtype3           2       1      11        3        7        5         3
          vv
clus       STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  subtype1         4         4         5          2          5          9
  subtype2         6         5         4          5          7         11
  subtype3         2         0        11          3          9         19
          vv
clus       STAGE IV
  subtype1        2
  subtype2        3
  subtype3        5
D2V5, multiclass
          vv
clus       T0+T1 T2 T3 T4
  subtype1     5 19 10 15
  subtype2    15 17 16 20
  subtype3    22 18 20 15
D2V6, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 33 13  5  3
  subtype2 52  7 13  9
  subtype3 42 19 10 16
D2V7, multiclass
          vv
clus       M0 M1 M1A M1B M1C
  subtype1 52  1   1   0   0
  subtype2 79  1   0   1   2
  subtype3 82  1   1   1   3
D2V8, multiclass
D2V9, binary
          cls
clus        0  1
  subtype1 15 17
  subtype2 39 25
  subtype3 38 19
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   15   17
  subtype2   39   25
  subtype3   38   19
     clus
vv    subtype1 subtype2 subtype3
  NO        15       39       38
  YES       17       25       19
D2V10, binary
          cls
clus        0  1
  subtype1  6 54
  subtype2  8 80
  subtype3 16 78
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    6   54
  subtype2    8   80
  subtype3   16   78
     clus
vv    subtype1 subtype2 subtype3
  NO         6        8       16
  YES       54       80       78
D2V11, continuous
D2V12, binary
          cls
clus        0  1
  subtype1 22 38
  subtype2 37 51
  subtype3 36 58
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   22   38
  subtype2   37   51
  subtype3   36   58
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       22       37       36
  MALE         38       51       58

Clustering(3) Variable = RPPA_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1 20 18
  subtype2 18 22
  subtype3  9 12
  subtype4 13 19
subtype1 subtype2 subtype3 subtype4 
      38       40       21       32 
subtype1 subtype2 subtype3 subtype4 
      18       22       12       19 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A2J8 TCGA-D3-A2JO TCGA-D3-A3CB 
       16.47        70.16        98.76         8.38        49.25        82.03 
TCGA-D3-A3MR TCGA-DA-A1I0 TCGA-DA-A1I4 TCGA-DA-A1I8 TCGA-DA-A3F2 TCGA-DA-A3F3 
      103.59        10.03         9.99        25.15        19.36         7.00 
TCGA-DA-A3F5 TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29G TCGA-EE-A29R 
       17.56         5.13        37.97        38.63         8.55         8.84 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29W TCGA-EE-A2A0 TCGA-EE-A2GH TCGA-EE-A2GK 
        9.99         6.48         8.68        11.31        21.17        16.01 
TCGA-EE-A2M5 TCGA-ER-A19A TCGA-ER-A19D TCGA-ER-A19E TCGA-ER-A19M TCGA-ER-A2NG 
        8.84        76.41         3.52        11.90        28.64        12.62 
TCGA-ER-A2NH TCGA-FS-A1ZA TCGA-GF-A3OT TCGA-GN-A261 TCGA-GN-A265 TCGA-GN-A266 
       11.74         7.27         9.90        15.35        84.72        10.09 
TCGA-GN-A267 TCGA-GN-A26A 
       16.21        12.16 

$subtype2
TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A1QA TCGA-D3-A3CE 
      111.09        32.55        28.08        22.55        31.40        13.32 
TCGA-D3-A3ML TCGA-D3-A3MO TCGA-EE-A20C TCGA-EE-A29P TCGA-EE-A2A2 TCGA-EE-A2GC 
        6.28         9.30         4.34        12.03        23.90        10.13 
TCGA-EE-A2GL TCGA-EE-A2GS TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A3AC TCGA-EE-A3AG 
       10.88        13.02        63.42       111.78        25.84        15.95 
TCGA-ER-A199 TCGA-ER-A19G TCGA-ER-A19J TCGA-ER-A1A1 TCGA-ER-A2NC TCGA-ER-A2NF 
        5.72       114.15         4.18        78.44        12.00        13.05 
TCGA-ER-A3ES TCGA-ER-A3PL TCGA-FS-A1YW TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 
        9.04         1.71        64.47        23.80        14.24        15.52 
TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZG TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FW-A3I3 
       20.38         8.22         7.17        40.64         8.68         0.20 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A268 TCGA-GN-A26D 
       24.85        31.33        15.39        14.70 

$subtype3
TCGA-D3-A1QB TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-D3-A3MV TCGA-D9-A3Z1 TCGA-DA-A1IA 
       68.09        10.26        11.41         5.39         4.01         4.93 
TCGA-DA-A1IC TCGA-DA-A3F8 TCGA-EE-A185 TCGA-EE-A29V TCGA-EE-A2A6 TCGA-EE-A2GI 
        6.64        14.83         4.27         2.43         8.94         3.91 
TCGA-ER-A19C TCGA-ER-A19H TCGA-ER-A19P TCGA-ER-A19Q TCGA-ER-A3ET TCGA-FR-A3YN 
        3.81        34.88        34.68         9.57         6.58         5.95 
TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZQ 
       12.89        47.38         8.68 

$subtype4
TCGA-D3-A2JC TCGA-D3-A2JN TCGA-D3-A2JP TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
       69.90        56.19        45.07        48.79        35.80        51.12 
TCGA-DA-A1I2 TCGA-DA-A1I5 TCGA-DA-A1IB TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A182 
       13.68        44.52        22.36        11.57         1.12         1.35 
TCGA-EE-A184 TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A2GR 
        5.13         4.41         1.08        27.12         9.47         1.15 
TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A3AA TCGA-EE-A3AF TCGA-ER-A193 TCGA-ER-A195 
        9.67         8.68       124.31        13.81        31.40        18.64 
TCGA-ER-A197 TCGA-ER-A198 TCGA-ER-A19F TCGA-ER-A19L TCGA-ER-A19N TCGA-FS-A1ZH 
       12.95        38.37        11.11        12.99        42.84        30.84 
TCGA-FS-A1ZJ TCGA-FS-A1ZP 
       12.92        52.11 

subtype1 subtype2 subtype3 subtype4 
    3.52     0.20     2.43     1.08 
subtype1 subtype2 subtype3 subtype4 
  103.59   114.15    68.09   124.31 
subtype1 subtype2 subtype3 subtype4 
  12.390   15.045    8.680   16.225 
[1] "3.5 - 103.6 (12.4)" "0.2 - 114.2 (15.0)" "2.4 - 68.1 (8.7)"  
[4] "1.1 - 124.3 (16.2)"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype4"
 [13] "subtype3" "subtype4" "subtype1" "subtype4" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype4"
 [25] "subtype4" "subtype4" "subtype1" "subtype4" "subtype1" "subtype4"
 [31] "subtype1" "subtype3" "subtype4" "subtype3" "subtype1" "subtype1"
 [37] "subtype1" "subtype3" "subtype4" "subtype4" "subtype4" "subtype4"
 [43] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [49] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype1"
 [55] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [61] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [67] "subtype4" "subtype2" "subtype4" "subtype4" "subtype1" "subtype2"
 [73] "subtype2" "subtype4" "subtype2" "subtype4" "subtype2" "subtype4"
 [79] "subtype4" "subtype4" "subtype4" "subtype2" "subtype1" "subtype3"
 [85] "subtype1" "subtype1" "subtype4" "subtype2" "subtype3" "subtype2"
 [91] "subtype4" "subtype1" "subtype4" "subtype3" "subtype3" "subtype2"
 [97] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[103] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype1" "subtype2" "subtype2" "subtype2" "subtype4" "subtype4"
[115] "subtype3" "subtype3" "subtype4" "subtype3" "subtype2" "subtype2"
[121] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[127] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype4"
 [13] "subtype3" "subtype4" "subtype1" "subtype4" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype4"
 [25] "subtype4" "subtype4" "subtype1" "subtype4" "subtype1" "subtype4"
 [31] "subtype1" "subtype3" "subtype4" "subtype3" "subtype1" "subtype1"
 [37] "subtype1" "subtype3" "subtype4" "subtype4" "subtype4" "subtype4"
 [43] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [49] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype1"
 [55] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [61] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [67] "subtype4" "subtype2" "subtype4" "subtype4" "subtype1" "subtype2"
 [73] "subtype2" "subtype4" "subtype2" "subtype4" "subtype2" "subtype4"
 [79] "subtype4" "subtype4" "subtype4" "subtype2" "subtype1" "subtype3"
 [85] "subtype1" "subtype1" "subtype4" "subtype2" "subtype3" "subtype2"
 [91] "subtype4" "subtype1" "subtype4" "subtype3" "subtype3" "subtype2"
 [97] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[103] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype1" "subtype2" "subtype2" "subtype2" "subtype4" "subtype4"
[115] "subtype3" "subtype3" "subtype4" "subtype3" "subtype2" "subtype2"
[121] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[127] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype4"
 [13] "subtype3" "subtype4" "subtype1" "subtype4" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype4"
 [25] "subtype4" "subtype4" "subtype1" "subtype4" "subtype1" "subtype4"
 [31] "subtype1" "subtype3" "subtype4" "subtype3" "subtype1" "subtype1"
 [37] "subtype1" "subtype3" "subtype4" "subtype4" "subtype4" "subtype4"
 [43] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [49] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype1"
 [55] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [61] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [67] "subtype4" "subtype2" "subtype4" "subtype4" "subtype1" "subtype2"
 [73] "subtype2" "subtype4" "subtype2" "subtype4" "subtype2" "subtype4"
 [79] "subtype4" "subtype4" "subtype4" "subtype2" "subtype1" "subtype3"
 [85] "subtype1" "subtype1" "subtype4" "subtype2" "subtype3" "subtype2"
 [91] "subtype4" "subtype1" "subtype4" "subtype3" "subtype3" "subtype2"
 [97] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[103] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype1" "subtype2" "subtype2" "subtype2" "subtype4" "subtype4"
[115] "subtype3" "subtype3" "subtype4" "subtype3" "subtype2" "subtype2"
[121] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[127] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
D3V2, survival
          sevent
clus2       0  1
  subtype1 23 20
  subtype2 24 26
  subtype3 11 13
  subtype4 15 20
subtype1 subtype2 subtype3 subtype4 
      43       50       24       35 
subtype1 subtype2 subtype3 subtype4 
      20       26       13       20 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A2J8 TCGA-D3-A2JO TCGA-D3-A3CB 
         504         2184         3687         1992         1547         5052 
TCGA-D3-A3MR TCGA-DA-A1I0 TCGA-DA-A1I4 TCGA-DA-A1I8 TCGA-DA-A3F2 TCGA-DA-A3F3 
        3151          620         1093         1640          870          319 
TCGA-DA-A3F5 TCGA-EE-A20F TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29G TCGA-EE-A29R 
        6553         2399         1455         1205         2191          440 
TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29W TCGA-EE-A2A0 TCGA-EE-A2GH TCGA-EE-A2GK 
        1700        10523         5217         1424         5536         1664 
TCGA-EE-A2M5 TCGA-EE-A2MC TCGA-EE-A2MI TCGA-EE-A2ML TCGA-EE-A2MP TCGA-EE-A2MU 
         659         1871         6224         6175         7562         1620 
TCGA-ER-A19A TCGA-ER-A19D TCGA-ER-A19E TCGA-ER-A19M TCGA-ER-A2NG TCGA-ER-A2NH 
        2365          383          396         1857          951          975 
TCGA-FS-A1ZA TCGA-GF-A3OT TCGA-GN-A261 TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 
         842          301         2324         2577          307         1959 
TCGA-GN-A26A 
         988 

$subtype2
TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A1QA TCGA-D3-A3CE 
        3408         3423          854          961         2326         1832 
TCGA-D3-A3ML TCGA-D3-A3MO TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JX TCGA-EE-A20C 
         421          283         4609         1663          194         4600 
TCGA-EE-A29P TCGA-EE-A2A2 TCGA-EE-A2GC TCGA-EE-A2GL TCGA-EE-A2GS TCGA-EE-A2M6 
        1716          743         1315         1673         1691         3931 
TCGA-EE-A2MD TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MR 
        1438         2927         4403         5106         1446         3150 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AC TCGA-EE-A3AG TCGA-ER-A199 TCGA-ER-A19G 
        4150         1265          786          714          279         8180 
TCGA-ER-A19J TCGA-ER-A1A1 TCGA-ER-A2NC TCGA-ER-A2NF TCGA-ER-A3ES TCGA-ER-A3PL 
         195         2433         1339          497         7514         1010 
TCGA-FS-A1YW TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z4 TCGA-FS-A1ZC TCGA-FS-A1ZD 
        6598         6163          636          854        10870         1628 
TCGA-FS-A1ZG TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FW-A3I3 TCGA-GN-A262 TCGA-GN-A264 
         295         1617          808            6         3664         3587 
TCGA-GN-A268 TCGA-GN-A26D 
        1909         1204 

$subtype3
TCGA-D3-A1QB TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-D3-A3MV TCGA-D9-A1JW TCGA-D9-A3Z1 
        2512         1320          361          653          111          345 
TCGA-DA-A1IA TCGA-DA-A1IC TCGA-DA-A3F8 TCGA-EE-A185 TCGA-EE-A29V TCGA-EE-A2A6 
        2005         2071          477          150          787         1787 
TCGA-EE-A2GI TCGA-EE-A2M8 TCGA-EE-A3AD TCGA-ER-A19C TCGA-ER-A19H TCGA-ER-A19P 
         686          601          112         1487         4634         4930 
TCGA-ER-A19Q TCGA-ER-A3ET TCGA-FR-A3YN TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZQ 
        1548         2443         2448          728         3080         4062 

$subtype4
TCGA-D3-A2JC TCGA-D3-A2JN TCGA-D3-A2JP TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY 
        2126         1709         1371         1487         1096         3564 
TCGA-DA-A1I2 TCGA-DA-A1I5 TCGA-DA-A1IB TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A182 
        5370         3265          713          907         1026          447 
TCGA-EE-A184 TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A2GP 
        2073          979           78         1349          565          422 
TCGA-EE-A2GR TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AE 
         435          595         2042         3781         3733          813 
TCGA-EE-A3AF TCGA-ER-A193 TCGA-ER-A195 TCGA-ER-A197 TCGA-ER-A198 TCGA-ER-A19F 
         420          955         1078          423         1543          802 
TCGA-ER-A19L TCGA-ER-A19N TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZP 
        3987         1340          995         1441         2273 

subtype1 subtype2 subtype3 subtype4 
     301        6      111       78 
subtype1 subtype2 subtype3 subtype4 
   10523    10870     4930     5370 
subtype1 subtype2 subtype3 subtype4 
  1664.0   1645.5   1403.5   1096.0 
[1] "301.0 - 10523.0 (1664.0)" "6.0 - 10870.0 (1645.5)"  
[3] "111.0 - 4930.0 (1403.5)"  "78.0 - 5370.0 (1096.0)"  
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype4"
 [13] "subtype3" "subtype4" "subtype1" "subtype4" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype4" "subtype4" "subtype4"
 [31] "subtype1" "subtype4" "subtype1" "subtype4" "subtype1" "subtype3"
 [37] "subtype4" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype4" "subtype4" "subtype4" "subtype4" "subtype3" "subtype2"
 [49] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype4"
 [55] "subtype4" "subtype4" "subtype2" "subtype1" "subtype1" "subtype1"
 [61] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
 [67] "subtype1" "subtype3" "subtype1" "subtype2" "subtype4" "subtype4"
 [73] "subtype2" "subtype4" "subtype4" "subtype1" "subtype2" "subtype3"
 [79] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [85] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [91] "subtype1" "subtype4" "subtype4" "subtype2" "subtype3" "subtype4"
 [97] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype4"
[103] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype4"
[109] "subtype2" "subtype3" "subtype2" "subtype4" "subtype1" "subtype4"
[115] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[121] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[133] "subtype2" "subtype4" "subtype4" "subtype3" "subtype3" "subtype4"
[139] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[145] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[151] "subtype1" "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype4"
 [13] "subtype3" "subtype4" "subtype1" "subtype4" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype4" "subtype4" "subtype4"
 [31] "subtype1" "subtype4" "subtype1" "subtype4" "subtype1" "subtype3"
 [37] "subtype4" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype4" "subtype4" "subtype4" "subtype4" "subtype3" "subtype2"
 [49] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype4"
 [55] "subtype4" "subtype4" "subtype2" "subtype1" "subtype1" "subtype1"
 [61] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
 [67] "subtype1" "subtype3" "subtype1" "subtype2" "subtype4" "subtype4"
 [73] "subtype2" "subtype4" "subtype4" "subtype1" "subtype2" "subtype3"
 [79] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [85] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [91] "subtype1" "subtype4" "subtype4" "subtype2" "subtype3" "subtype4"
 [97] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype4"
[103] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype4"
[109] "subtype2" "subtype3" "subtype2" "subtype4" "subtype1" "subtype4"
[115] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[121] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[133] "subtype2" "subtype4" "subtype4" "subtype3" "subtype3" "subtype4"
[139] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[145] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[151] "subtype1" "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype4"
 [13] "subtype3" "subtype4" "subtype1" "subtype4" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype4" "subtype4" "subtype4"
 [31] "subtype1" "subtype4" "subtype1" "subtype4" "subtype1" "subtype3"
 [37] "subtype4" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype4" "subtype4" "subtype4" "subtype4" "subtype3" "subtype2"
 [49] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype4"
 [55] "subtype4" "subtype4" "subtype2" "subtype1" "subtype1" "subtype1"
 [61] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
 [67] "subtype1" "subtype3" "subtype1" "subtype2" "subtype4" "subtype4"
 [73] "subtype2" "subtype4" "subtype4" "subtype1" "subtype2" "subtype3"
 [79] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [85] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [91] "subtype1" "subtype4" "subtype4" "subtype2" "subtype3" "subtype4"
 [97] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype4"
[103] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype4"
[109] "subtype2" "subtype3" "subtype2" "subtype4" "subtype1" "subtype4"
[115] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[121] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[133] "subtype2" "subtype4" "subtype4" "subtype3" "subtype3" "subtype4"
[139] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[145] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[151] "subtype1" "subtype2"
D3V3, continuous
          vv
clus       DISTANT METASTASIS PRIMARY TUMOR
  subtype1                  2             0
  subtype2                  9             1
  subtype3                  4             0
  subtype4                  3             0
          vv
clus       REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE REGIONAL LYMPH NODE
  subtype1                                        14                  29
  subtype2                                         5                  35
  subtype3                                         5                  16
  subtype4                                         3                  30
D3V4, multiclass
          vv
clus       I OR II NOS STAGE 0 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  subtype1           2       1       5        1        6        2         2
  subtype2           2       1       5        1        5        2         2
  subtype3           1       0       1        2        1        1         0
  subtype4           2       0       1        4        2        3         1
          vv
clus       STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  subtype1         1         0         3          3          6          9
  subtype2         2         3         5          1          1          6
  subtype3         1         0         4          1          4          4
  subtype4         1         0         2          0          4          6
          vv
clus       STAGE IV
  subtype1        1
  subtype2        4
  subtype3        0
  subtype4        2
D3V5, multiclass
          vv
clus       T0+T1 T2 T3 T4
  subtype1     7 11 12  9
  subtype2     6 10  6 12
  subtype3     5  7  5  3
  subtype4    10  5  5  6
D3V6, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 21  8  5  8
  subtype2 28  5  4  6
  subtype3  9  5  7  2
  subtype4 18  5  5  3
D3V7, multiclass
          vv
clus       M0 M1 M1A M1B M1C
  subtype1 41  1   1   0   0
  subtype2 38  2   1   2   0
  subtype3 24  0   0   0   0
  subtype4 30  0   0   0   2
D3V8, multiclass
D3V9, binary
          cls
clus        0  1
  subtype1 19  8
  subtype2 21 13
  subtype3 10  5
  subtype4 11  9
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   19    8
  subtype2   21   13
  subtype3   10    5
  subtype4   11    9
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        19       21       10       11
  YES        8       13        5        9
D3V10, binary
          cls
clus        0  1
  subtype1  5 40
  subtype2  8 42
  subtype3  2 23
  subtype4  8 29
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5   40
  subtype2    8   42
  subtype3    2   23
  subtype4    8   29
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         5        8        2        8
  YES       40       42       23       29
D3V11, continuous
D3V12, binary
          cls
clus        0  1
  subtype1 17 28
  subtype2 19 31
  subtype3  9 16
  subtype4 17 20
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   17   28
  subtype2   19   31
  subtype3    9   16
  subtype4   17   20
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       17       19        9       17
  MALE         28       31       16       20

Clustering(4) Variable = RPPA_CHIERARCHICAL
D4V1, survival
          sevent
clus2       0  1
  subtype1 21 28
  subtype2 22 24
  subtype3 17 19
subtype1 subtype2 subtype3 
      49       46       36 
subtype1 subtype2 subtype3 
      28       24       19 
$subtype1
TCGA-D3-A1Q9 TCGA-D3-A1QA TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-D3-A3CE TCGA-D3-A3MR 
       22.55        31.40        10.26        11.41        13.32       103.59 
TCGA-D3-A3MV TCGA-DA-A1HW TCGA-DA-A1I2 TCGA-DA-A1I5 TCGA-DA-A1IA TCGA-DA-A1IB 
        5.39        35.80        13.68        44.52         4.93        22.36 
TCGA-DA-A1IC TCGA-DA-A3F8 TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A184 TCGA-EE-A185 
        6.64        14.83        11.57         1.12         5.13         4.27 
TCGA-EE-A20F TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A2A6 
        5.13         4.41         1.08        27.12         9.47         8.94 
TCGA-EE-A2GC TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2MJ 
       10.13        21.17         3.91         1.15        13.02        63.42 
TCGA-ER-A197 TCGA-ER-A198 TCGA-ER-A19C TCGA-ER-A19L TCGA-ER-A19P TCGA-ER-A19Q 
       12.95        38.37         3.81        12.99        34.68         9.57 
TCGA-ER-A2NH TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FS-A1YW TCGA-FS-A1Z3 TCGA-FS-A1ZG 
       11.74         6.58         1.71        64.47        14.24         7.17 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZQ TCGA-FW-A3I3 TCGA-GN-A262 
       12.92        12.89        47.38         8.68         0.20        24.85 
TCGA-GN-A26A 
       12.16 

$subtype2
TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2JC TCGA-D3-A2JO 
      111.09        32.55        98.76        28.08        69.90        49.25 
TCGA-D3-A3ML TCGA-D3-A3MO TCGA-DA-A1HV TCGA-DA-A1I8 TCGA-EE-A20C TCGA-EE-A29P 
        6.28         9.30        48.79        25.15         4.34        12.03 
TCGA-EE-A29S TCGA-EE-A2A2 TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GT TCGA-EE-A2GU 
        9.99        23.90        16.01        10.88         9.67         8.68 
TCGA-EE-A2MK TCGA-EE-A3AA TCGA-EE-A3AC TCGA-EE-A3AF TCGA-EE-A3AG TCGA-ER-A193 
      111.78       124.31        25.84        13.81        15.95        31.40 
TCGA-ER-A199 TCGA-ER-A19D TCGA-ER-A19E TCGA-ER-A19F TCGA-ER-A19G TCGA-ER-A19J 
        5.72         3.52        11.90        11.11       114.15         4.18 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A2NC TCGA-ER-A2NF TCGA-ER-A3ES TCGA-FS-A1Z0 
       42.84        78.44        12.00        13.05         9.04        23.80 
TCGA-FS-A1Z4 TCGA-FS-A1ZA TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZT TCGA-FS-A1ZU 
       15.52         7.27        20.38         8.22        40.64         8.68 
TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A268 TCGA-GN-A26D 
       31.33        10.09        15.39        14.70 

$subtype3
TCGA-D3-A1Q1 TCGA-D3-A1Q6 TCGA-D3-A1QB TCGA-D3-A2J8 TCGA-D3-A2JN TCGA-D3-A2JP 
       16.47        70.16        68.09         8.38        56.19        45.07 
TCGA-D3-A3CB TCGA-D9-A3Z1 TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I4 TCGA-DA-A3F2 
       82.03         4.01        51.12        10.03         9.99        19.36 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A182 TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29G 
        7.00        17.56         1.35        37.97        38.63         8.55 
TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29W TCGA-EE-A2A0 TCGA-EE-A2M5 
        8.84         6.48         2.43         8.68        11.31         8.84 
TCGA-ER-A195 TCGA-ER-A19A TCGA-ER-A19H TCGA-ER-A19M TCGA-ER-A2NG TCGA-FR-A3YN 
       18.64        76.41        34.88        28.64        12.62         5.95 
TCGA-FS-A1ZH TCGA-FS-A1ZP TCGA-GF-A3OT TCGA-GN-A261 TCGA-GN-A265 TCGA-GN-A267 
       30.84        52.11         9.90        15.35        84.72        16.21 

subtype1 subtype2 subtype3 
    0.20     3.52     1.35 
subtype1 subtype2 subtype3 
  103.59   124.31    84.72 
subtype1 subtype2 subtype3 
  11.740   15.455   16.340 
[1] "0.2 - 103.6 (11.7)" "3.5 - 124.3 (15.5)" "1.4 - 84.7 (16.3)" 
  [1] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
  [7] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [13] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [19] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
 [25] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [31] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [37] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [43] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [49] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [55] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [67] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [91] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [97] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[103] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[115] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[121] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[127] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
  [1] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
  [7] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [13] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [19] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
 [25] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [31] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [37] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [43] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [49] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [55] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [67] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [91] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [97] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[103] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[115] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[121] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[127] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
  [1] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
  [7] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [13] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [19] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
 [25] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [31] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [37] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [43] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [49] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [55] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [67] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [91] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [97] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[103] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[115] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[121] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[127] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
D4V2, survival
          sevent
clus2       0  1
  subtype1 30 31
  subtype2 25 27
  subtype3 18 21
subtype1 subtype2 subtype3 
      61       52       39 
subtype1 subtype2 subtype3 
      31       27       21 
$subtype1
TCGA-D3-A1Q9 TCGA-D3-A1QA TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-D3-A3CE TCGA-D3-A3MR 
         961         2326         1320          361         1832         3151 
TCGA-D3-A3MV TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HW 
         653         4609         1663          111          194         1096 
TCGA-DA-A1I2 TCGA-DA-A1I5 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F8 
        5370         3265         2005          713         2071          477 
TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A184 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29H 
         907         1026         2073          150         2399          979 
TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GH 
          78         1349          565         1787         1315         5536 
TCGA-EE-A2GI TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2M8 TCGA-EE-A2MD TCGA-EE-A2MJ 
         686          435         1691          601         1438         2927 
TCGA-EE-A2ML TCGA-EE-A2MP TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AD TCGA-EE-A3AE 
        6175         7562         4150         1265          112          813 
TCGA-ER-A197 TCGA-ER-A198 TCGA-ER-A19C TCGA-ER-A19L TCGA-ER-A19P TCGA-ER-A19Q 
         423         1543         1487         3987         4930         1548 
TCGA-ER-A2NH TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FS-A1YW TCGA-FS-A1Z3 TCGA-FS-A1ZG 
         975         2443         1010         6598          636          295 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZQ TCGA-FW-A3I3 TCGA-GN-A262 
        1441          728         3080         4062            6         3664 
TCGA-GN-A26A 
         988 

$subtype2
TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A1Q7 TCGA-D3-A1Q8 TCGA-D3-A2JC TCGA-D3-A2JO 
        3408         3423         3687          854         2126         1547 
TCGA-D3-A3ML TCGA-D3-A3MO TCGA-DA-A1HV TCGA-DA-A1I8 TCGA-EE-A20C TCGA-EE-A29P 
         421          283         1487         1640         4600         1716 
TCGA-EE-A29S TCGA-EE-A2A2 TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GT TCGA-EE-A2GU 
        1700          743         1664         1673          595         2042 
TCGA-EE-A2M6 TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MR 
        3931         6224         4403         5106         1446         3150 
TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AF TCGA-EE-A3AG TCGA-ER-A193 
        3781         3733          786          420          714          955 
TCGA-ER-A199 TCGA-ER-A19D TCGA-ER-A19E TCGA-ER-A19F TCGA-ER-A19G TCGA-ER-A19J 
         279          383          396          802         8180          195 
TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A2NC TCGA-ER-A2NF TCGA-ER-A3ES TCGA-FS-A1Z0 
        1340         2433         1339          497         7514         6163 
TCGA-FS-A1Z4 TCGA-FS-A1ZA TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZT TCGA-FS-A1ZU 
         854          842        10870         1628         1617          808 
TCGA-GN-A264 TCGA-GN-A266 TCGA-GN-A268 TCGA-GN-A26D 
        3587          307         1909         1204 

$subtype3
TCGA-D3-A1Q1 TCGA-D3-A1Q6 TCGA-D3-A1QB TCGA-D3-A2J8 TCGA-D3-A2JN TCGA-D3-A2JP 
         504         2184         2512         1992         1709         1371 
TCGA-D3-A3CB TCGA-D9-A3Z1 TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I4 TCGA-DA-A3F2 
        5052          345         3564          620         1093          870 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A182 TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29G 
         319         6553          447         1455         1205         2191 
TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29W TCGA-EE-A2A0 TCGA-EE-A2GP 
         440        10523          787         5217         1424          422 
TCGA-EE-A2M5 TCGA-EE-A2MC TCGA-EE-A2MU TCGA-ER-A195 TCGA-ER-A19A TCGA-ER-A19H 
         659         1871         1620         1078         2365         4634 
TCGA-ER-A19M TCGA-ER-A2NG TCGA-FR-A3YN TCGA-FS-A1ZH TCGA-FS-A1ZP TCGA-GF-A3OT 
        1857          951         2448          995         2273          301 
TCGA-GN-A261 TCGA-GN-A265 TCGA-GN-A267 
        2324         2577         1959 

subtype1 subtype2 subtype3 
       6      195      301 
subtype1 subtype2 subtype3 
    7562    10870    10523 
subtype1 subtype2 subtype3 
  1349.0   1622.5   1620.0 
[1] "6.0 - 7562.0 (1349.0)"    "195.0 - 10870.0 (1622.5)"
[3] "301.0 - 10523.0 (1620.0)"
  [1] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
  [7] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [13] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [19] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [37] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [43] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
 [55] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [61] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
 [67] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [73] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
 [79] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [85] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [91] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [97] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[103] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[109] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[115] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[121] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[127] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[139] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[145] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[151] "subtype1" "subtype2"
  [1] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
  [7] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [13] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [19] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [37] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [43] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
 [55] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [61] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
 [67] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [73] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
 [79] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [85] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [91] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [97] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[103] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[109] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[115] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[121] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[127] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[139] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[145] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[151] "subtype1" "subtype2"
  [1] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
  [7] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [13] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [19] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [37] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [43] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
 [55] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [61] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
 [67] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [73] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
 [79] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [85] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [91] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [97] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[103] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[109] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[115] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[121] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[127] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[139] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[145] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[151] "subtype1" "subtype2"
D4V3, continuous
          vv
clus       DISTANT METASTASIS PRIMARY TUMOR
  subtype1                  7             0
  subtype2                  8             1
  subtype3                  3             0
          vv
clus       REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE REGIONAL LYMPH NODE
  subtype1                                        11                  43
  subtype2                                         6                  38
  subtype3                                        10                  29
D4V4, multiclass
          vv
clus       I OR II NOS STAGE 0 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  subtype1           1       0       4        5        6        7         0
  subtype2           3       1       6        2        4        0         4
  subtype3           3       1       2        1        4        1         1
          vv
clus       STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  subtype1         2         0         6          2          7          7
  subtype2         3         3         4          1          2          7
  subtype3         0         0         4          2          6         11
          vv
clus       STAGE IV
  subtype1        3
  subtype2        2
  subtype3        2
D4V5, multiclass
          vv
clus       T0+T1 T2 T3 T4
  subtype1    12 14 12 12
  subtype2     9  9  5 11
  subtype3     7 10 11  7
D4V6, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 31 10 10  4
  subtype2 29  3  5  7
  subtype3 16 10  6  8
D4V7, multiclass
          vv
clus       M0 M1 M1A M1B M1C
  subtype1 54  1   1   1   1
  subtype2 41  1   0   1   0
  subtype3 38  1   1   0   1
D4V8, multiclass
D4V9, binary
          cls
clus        0  1
  subtype1 29 14
  subtype2 19 11
  subtype3 13 10
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   29   14
  subtype2   19   11
  subtype3   13   10
     clus
vv    subtype1 subtype2 subtype3
  NO        29       19       13
  YES       14       11       10
D4V10, binary
          cls
clus        0  1
  subtype1  5 57
  subtype2 12 41
  subtype3  6 36
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5   57
  subtype2   12   41
  subtype3    6   36
     clus
vv    subtype1 subtype2 subtype3
  NO         5       12        6
  YES       57       41       36
D4V11, continuous
D4V12, binary
          cls
clus        0  1
  subtype1 27 35
  subtype2 23 30
  subtype3 12 30
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   27   35
  subtype2   23   30
  subtype3   12   30
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       27       23       12
  MALE         35       30       30

Clustering(5) Variable = MRNASEQ_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1 32 39
  subtype2 40 16
  subtype3 36 46
subtype1 subtype2 subtype3 
      71       56       82 
subtype1 subtype2 subtype3 
      39       16       46 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A2JA 
       16.47       111.09        32.55        70.16        28.08        88.50 
TCGA-D3-A2JC TCGA-D3-A2JF TCGA-D3-A2JN TCGA-D3-A2JP TCGA-D3-A3C6 TCGA-D3-A3C7 
       69.90        30.87        56.19        45.07        15.25        33.11 
TCGA-D3-A3CE TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D3-A51N TCGA-D3-A51R TCGA-D3-A5GN 
       13.32         9.30         5.39         8.88        20.48        52.04 
TCGA-D3-A5GR TCGA-D3-A5GS TCGA-DA-A1HY TCGA-DA-A1I2 TCGA-DA-A1I7 TCGA-DA-A1I8 
        2.01         6.97        51.12        13.68        36.69        25.15 
TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A20B TCGA-EE-A20C TCGA-EE-A20H TCGA-EE-A29A 
        7.00        17.56        36.07         4.34         9.24         7.96 
TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A29W TCGA-EE-A2A5 TCGA-EE-A2GD 
        8.12         8.84         6.48         8.68         9.67        17.98 
TCGA-EE-A2GE TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GS TCGA-EE-A2M5 TCGA-EE-A2MK 
       34.92        33.83        30.84        13.02         8.84       111.78 
TCGA-EE-A3AG TCGA-EE-A3J8 TCGA-ER-A195 TCGA-ER-A19D TCGA-ER-A19E TCGA-ER-A19H 
       15.95        16.14        18.64         3.52        11.90        34.88 
TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A2NC TCGA-ER-A3PL TCGA-FS-A1YX TCGA-FS-A1Z0 
       12.99        28.64        12.00         1.71         3.45        23.80 
TCGA-FS-A1Z3 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZF 
       14.24         7.30         7.27        20.38         8.22        11.08 
TCGA-FS-A1ZH TCGA-FS-A1ZM TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A4F5 TCGA-FS-A4FB 
       30.84        47.38         8.81        49.15        28.73         5.98 
TCGA-GF-A3OT TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A266 TCGA-GN-A26A 
        9.90        15.35        24.85        10.09        12.16 

$subtype2
TCGA-D3-A1Q3 TCGA-D3-A1Q7 TCGA-D3-A2J7 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JB 
        8.52        98.76        85.32         8.38        21.14        68.25 
TCGA-D3-A2JH TCGA-D3-A2JL TCGA-D3-A2JO TCGA-D3-A3C8 TCGA-D3-A3CB TCGA-D3-A3CF 
       25.38        77.00        49.25        34.13        82.03        24.00 
TCGA-D3-A3MR TCGA-D3-A51F TCGA-D3-A51H TCGA-D3-A51J TCGA-D3-A51T TCGA-D3-A5GO 
      103.59        42.71        15.09        41.13        13.94        47.87 
TCGA-DA-A1HV TCGA-DA-A1I1 TCGA-DA-A1I5 TCGA-DA-A1IB TCGA-DA-A3F8 TCGA-EE-A181 
       48.79        39.19        44.52        22.36        14.83         1.12 
TCGA-EE-A20F TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29S TCGA-EE-A2A0 TCGA-EE-A2A1 
        5.13         9.47        12.03         9.99        11.31        25.28 
TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK 
       23.90         8.94        21.17         3.91        19.43        16.01 
TCGA-EE-A2GL TCGA-EE-A2GT TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A3AA TCGA-ER-A193 
       10.88         9.67         7.96        63.42       124.31        31.40 
TCGA-ER-A199 TCGA-ER-A19A TCGA-ER-A19G TCGA-ER-A19N TCGA-ER-A19P TCGA-ER-A1A1 
        5.72        76.41       114.15        42.84        34.68        78.44 
TCGA-ER-A2NH TCGA-FR-A44A TCGA-FS-A1Z4 TCGA-FS-A1ZT TCGA-FS-A1ZW TCGA-FS-A4F8 
       11.74        72.16        15.52        40.64        27.39        14.20 
TCGA-GF-A4EO TCGA-GN-A265 
        7.23        84.72 

$subtype3
TCGA-D3-A1Q9 TCGA-D3-A1QA TCGA-D3-A1QB TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-D3-A2JK 
       22.55        31.40        68.09        10.26        11.41         6.35 
TCGA-D3-A3BZ TCGA-D3-A3CC TCGA-D3-A3ML TCGA-D3-A3MU TCGA-D3-A51E TCGA-D3-A51K 
       99.55        61.38         6.28        13.55        80.22        17.72 
TCGA-D3-A5GL TCGA-D3-A5GU TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1I0 
       95.38        23.11         4.01         2.86        35.80        10.03 
TCGA-DA-A1I4 TCGA-DA-A1IA TCGA-DA-A1IC TCGA-EB-A44Q TCGA-EB-A44R TCGA-EE-A17X 
        9.99         4.93         6.64         0.20         0.20        11.57 
TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A184 TCGA-EE-A185 TCGA-EE-A20I 
        6.31         1.35        12.20         5.13         4.27         1.18 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29G TCGA-EE-A29H TCGA-EE-A29L 
       37.97        11.15        38.63         8.55         4.41         1.08 
TCGA-EE-A29M TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GM 
       27.12         2.43         8.09        39.39        10.13        28.31 
TCGA-EE-A2GR TCGA-EE-A2GU TCGA-EE-A3AC TCGA-EE-A3AF TCGA-ER-A197 TCGA-ER-A198 
        1.15         8.68        25.84        13.81        12.95        38.37 
TCGA-ER-A19C TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19Q TCGA-ER-A2NF TCGA-ER-A2NG 
        3.81        11.11         4.18         9.57        13.05        12.62 
TCGA-ER-A3ES TCGA-ER-A3ET TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YY TCGA-FS-A1ZB 
        9.04         6.58         5.95        64.47        11.05         3.39 
TCGA-FS-A1ZE TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZQ 
       19.53         7.17        12.92        12.89        52.11         8.68 
TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F4 
        8.68         0.82         5.23        53.82         3.22         7.36 
TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FS-A4FD TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU 
       10.78         6.41         2.27         0.20         1.02         0.13 
TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26D 
       31.33        16.21        15.39        14.70 

subtype1 subtype2 subtype3 
    1.71     1.12     0.13 
subtype1 subtype2 subtype3 
  111.78   124.31    99.55 
subtype1 subtype2 subtype3 
   15.35    24.64    10.08 
[1] "1.7 - 111.8 (15.3)" "1.1 - 124.3 (24.6)" "0.1 - 99.5 (10.1)" 
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [19] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [31] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [37] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [43] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [49] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [55] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [61] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
 [67] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
 [85] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
 [97] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[103] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[109] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[121] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[127] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[133] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[139] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[145] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[151] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[157] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[163] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[169] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[175] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[181] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[187] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[193] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[199] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[205] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [19] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [31] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [37] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [43] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [49] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [55] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [61] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
 [67] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
 [85] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
 [97] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[103] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[109] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[121] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[127] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[133] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[139] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[145] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[151] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[157] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[163] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[169] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[175] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[181] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[187] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[193] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[199] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[205] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [19] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [31] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [37] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [43] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [49] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [55] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [61] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
 [67] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
 [85] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
 [97] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[103] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[109] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[121] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[127] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[133] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[139] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[145] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[151] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[157] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[163] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[169] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[175] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[181] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[187] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[193] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[199] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[205] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
D5V2, survival
          sevent
clus2       0  1
  subtype1 36 46
  subtype2 43 19
  subtype3 42 49
subtype1 subtype2 subtype3 
      82       62       91 
subtype1 subtype2 subtype3 
      46       19       49 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A2JA 
         504         3408         3423         2184          854         3514 
TCGA-D3-A2JC TCGA-D3-A2JF TCGA-D3-A2JN TCGA-D3-A2JP TCGA-D3-A3C6 TCGA-D3-A3C7 
        2126         1483         1709         1371         1765         1007 
TCGA-D3-A3CE TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D3-A51N TCGA-D3-A51R TCGA-D3-A5GN 
        1832          283          653          305         1572         4140 
TCGA-D3-A5GR TCGA-D3-A5GS TCGA-D9-A1JX TCGA-DA-A1HY TCGA-DA-A1I2 TCGA-DA-A1I7 
        5052          226          194         3564         5370         1861 
TCGA-DA-A1I8 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-EE-A20B TCGA-EE-A20C TCGA-EE-A20H 
        1640          319         6553         3335         4600         5118 
TCGA-EE-A29A TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A29W TCGA-EE-A2A5 
        1926         1136          440        10523         5217         1194 
TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GS 
        9567         4134         2766         3101          422         1691 
TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2MC TCGA-EE-A2MI TCGA-EE-A2MK 
         659         3931          876         1871         6224         4403 
TCGA-EE-A2MM TCGA-EE-A2MP TCGA-EE-A2MS TCGA-EE-A3AB TCGA-EE-A3AG TCGA-EE-A3AH 
        5106         7562         4150         3733          714         4221 
TCGA-EE-A3J8 TCGA-ER-A195 TCGA-ER-A19D TCGA-ER-A19E TCGA-ER-A19H TCGA-ER-A19L 
        1044         1078          383          396         4634         3987 
TCGA-ER-A19M TCGA-ER-A2NC TCGA-ER-A3PL TCGA-FS-A1YX TCGA-FS-A1Z0 TCGA-FS-A1Z3 
        1857         1339         1010         1478         6163          636 
TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZF TCGA-FS-A1ZH 
         236          842        10870         1628          470          995 
TCGA-FS-A1ZM TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A4F5 TCGA-FS-A4FB TCGA-GF-A3OT 
        3080          347         4525          874          813          301 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A266 TCGA-GN-A26A 
        2324         3664          307          988 

$subtype2
TCGA-D3-A1Q3 TCGA-D3-A1Q7 TCGA-D3-A2J7 TCGA-D3-A2J8 TCGA-D3-A2J9 TCGA-D3-A2JB 
         507         3687         3136         1992          723         5110 
TCGA-D3-A2JH TCGA-D3-A2JL TCGA-D3-A2JO TCGA-D3-A3C8 TCGA-D3-A3CB TCGA-D3-A3CF 
         951         4748         1547         1038         5052          746 
TCGA-D3-A3MR TCGA-D3-A51F TCGA-D3-A51H TCGA-D3-A51J TCGA-D3-A51T TCGA-D3-A5GO 
        3151         1329         1221         4012          458         4195 
TCGA-DA-A1HV TCGA-DA-A1I1 TCGA-DA-A1I5 TCGA-DA-A1IB TCGA-DA-A3F8 TCGA-EE-A181 
        1487         5926         3265          713          477         1026 
TCGA-EE-A20F TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29S TCGA-EE-A2A0 TCGA-EE-A2A1 
        2399          565         1716         1700         1424         2401 
TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK 
         743         1787         5536          686         2717         1664 
TCGA-EE-A2GL TCGA-EE-A2GT TCGA-EE-A2M8 TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
        1673          595          601         3141         3138          516 
TCGA-EE-A2MJ TCGA-EE-A2ML TCGA-EE-A2MR TCGA-EE-A3AA TCGA-EE-A3AE TCGA-ER-A193 
        2927         6175         3150         3781          813          955 
TCGA-ER-A199 TCGA-ER-A19A TCGA-ER-A19G TCGA-ER-A19N TCGA-ER-A19P TCGA-ER-A1A1 
         279         2365         8180         1340         4930         2433 
TCGA-ER-A2NH TCGA-FR-A44A TCGA-FS-A1Z4 TCGA-FS-A1ZT TCGA-FS-A1ZW TCGA-FS-A4F8 
         975         4885          854         1617         1505         5318 
TCGA-GF-A4EO TCGA-GN-A265 
         220         2577 

$subtype3
TCGA-D3-A1Q9 TCGA-D3-A1QA TCGA-D3-A1QB TCGA-D3-A2J6 TCGA-D3-A2JD TCGA-D3-A2JK 
         961         2326         2512         1320          361          368 
TCGA-D3-A3BZ TCGA-D3-A3CC TCGA-D3-A3ML TCGA-D3-A3MU TCGA-D3-A51E TCGA-D3-A51K 
        3516         2644          421          819         4923          559 
TCGA-D3-A5GL TCGA-D3-A5GU TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A3Z1 
        3373         3808         4609         1663          111          345 
TCGA-D9-A3Z3 TCGA-DA-A1HW TCGA-DA-A1I0 TCGA-DA-A1I4 TCGA-DA-A1IA TCGA-DA-A1IC 
          98         1096          620         1093         2005         2071 
TCGA-EB-A44Q TCGA-EB-A44R TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 
          28          309          907          263          447          817 
TCGA-EE-A184 TCGA-EE-A185 TCGA-EE-A20I TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
        2073          150          412         1455          425         1205 
TCGA-EE-A29G TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29V TCGA-EE-A29X 
        2191          979           78         1349          787          545 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GM TCGA-EE-A2GR TCGA-EE-A2GU TCGA-EE-A2MD 
        1446         1315         2296          435         2042         1438 
TCGA-EE-A2MN TCGA-EE-A2MQ TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AC TCGA-EE-A3AD 
        1446         1315         1265         1620          786          112 
TCGA-EE-A3AF TCGA-ER-A197 TCGA-ER-A198 TCGA-ER-A19C TCGA-ER-A19F TCGA-ER-A19J 
         420          423         1543         1487          802          195 
TCGA-ER-A19Q TCGA-ER-A2NF TCGA-ER-A2NG TCGA-ER-A3ES TCGA-ER-A3ET TCGA-FR-A3YN 
        1548          497          951         7514         2443         2448 
TCGA-FS-A1YW TCGA-FS-A1YY TCGA-FS-A1ZB TCGA-FS-A1ZE TCGA-FS-A1ZG TCGA-FS-A1ZJ 
        6598         6953         1486         1225          295         1441 
TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FS-A1ZZ 
         728         2273         4062          808          823          822 
TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F4 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FS-A4FD 
        2366         1525         2028          378         1504         2369 
TCGA-FW-A3I3 TCGA-FW-A3R5 TCGA-FW-A3TU TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A268 
           6          699         1446         3587         1959         1909 
TCGA-GN-A26D 
        1204 

subtype1 subtype2 subtype3 
     194      220        6 
subtype1 subtype2 subtype3 
   10870     8180     7514 
subtype1 subtype2 subtype3 
  1737.0   1686.5   1265.0 
[1] "194.0 - 10870.0 (1737.0)" "220.0 - 8180.0 (1686.5)" 
[3] "6.0 - 7514.0 (1265.0)"   
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [19] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [31] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [37] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [43] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [49] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [55] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [61] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
 [67] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [73] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [85] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[103] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[121] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[127] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[139] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[145] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[151] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[157] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[163] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[169] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[175] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[181] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[187] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[193] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[199] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[205] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[211] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[217] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[229] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[235] "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [19] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [31] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [37] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [43] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [49] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [55] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [61] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
 [67] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [73] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [85] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[103] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[121] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[127] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[139] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[145] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[151] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[157] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[163] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[169] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[175] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[181] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[187] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[193] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[199] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[205] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[211] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[217] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[229] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[235] "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [19] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [31] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [37] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [43] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [49] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [55] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [61] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
 [67] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [73] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [85] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[103] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[121] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[127] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[139] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[145] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[151] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[157] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[163] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[169] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[175] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[181] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[187] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[193] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[199] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[205] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[211] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[217] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[229] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[235] "subtype3"
D5V3, continuous
          vv
clus       DISTANT METASTASIS PRIMARY TUMOR
  subtype1                 10             0
  subtype2                  4             0
  subtype3                 18             1
          vv
clus       REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE REGIONAL LYMPH NODE
  subtype1                                        27                  48
  subtype2                                         7                  52
  subtype3                                        15                  58
D5V4, multiclass
          vv
clus       I OR II NOS STAGE 0 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  subtype1           4       3       9        2        8        7         3
  subtype2           2       1       7        4        4        5         4
  subtype3           3       0       4        4       10        5         3
          vv
clus       STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  subtype1         3         1        11          4          5         10
  subtype2         1         2         6          0          4         14
  subtype3         8         6         3          6         11         15
          vv
clus       STAGE IV
  subtype1        5
  subtype2        2
  subtype3        3
D5V5, multiclass
          vv
clus       T0+T1 T2 T3 T4
  subtype1    17 25 14 11
  subtype2    15 11 12 12
  subtype3    10 18 20 26
D5V6, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 44 16  9  8
  subtype2 37 10  3  9
  subtype3 46 13 15 11
D5V7, multiclass
          vv
clus       M0 M1 M1A M1B M1C
  subtype1 74  0   1   1   3
  subtype2 57  1   0   0   1
  subtype3 81  2   1   1   1
D5V8, multiclass
D5V9, binary
          cls
clus        0  1
  subtype1 27 17
  subtype2 25 13
  subtype3 39 31
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   27   17
  subtype2   25   13
  subtype3   39   31
     clus
vv    subtype1 subtype2 subtype3
  NO        27       25       39
  YES       17       13       31
D5V10, binary
          cls
clus        0  1
  subtype1 13 72
  subtype2 11 52
  subtype3  6 87
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   13   72
  subtype2   11   52
  subtype3    6   87
     clus
vv    subtype1 subtype2 subtype3
  NO        13       11        6
  YES       72       52       87
D5V11, continuous
D5V12, binary
          cls
clus        0  1
  subtype1 38 47
  subtype2 22 41
  subtype3 35 58
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   38   47
  subtype2   22   41
  subtype3   35   58
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       38       22       35
  MALE         47       41       58

Clustering(6) Variable = MRNASEQ_CHIERARCHICAL
D6V1, survival
          sevent
clus2       0  1
  subtype1 15 33
  subtype2 68 36
  subtype3 25 32
subtype1 subtype2 subtype3 
      48      104       57 
subtype1 subtype2 subtype3 
      33       36       32 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A2J6 TCGA-D3-A2JK TCGA-D3-A3CC TCGA-D3-A3ML TCGA-D3-A3MU 
       16.47        10.26         6.35        61.38         6.28        13.55 
TCGA-D3-A51K TCGA-D3-A5GL TCGA-DA-A1I4 TCGA-DA-A1IA TCGA-DA-A1IC TCGA-EB-A44R 
       17.72        95.38         9.99         4.93         6.64         0.20 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A29D TCGA-EE-A29E 
       11.57         6.31         1.35         4.27        11.15        38.63 
TCGA-EE-A29G TCGA-EE-A29L TCGA-EE-A29V TCGA-EE-A2GR TCGA-EE-A3AF TCGA-ER-A197 
        8.55         1.08         2.43         1.15        13.81        12.95 
TCGA-ER-A19A TCGA-ER-A19C TCGA-ER-A19J TCGA-ER-A3ES TCGA-FS-A1YY TCGA-FS-A1ZB 
       76.41         3.81         4.18         9.04        11.05         3.39 
TCGA-FS-A1ZE TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZR TCGA-FS-A1ZU 
       19.53         7.17        12.92        12.89         8.81         8.68 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F2 TCGA-FS-A4F5 TCGA-FS-A4F9 
        0.82         5.23        53.82         3.22        28.73        10.78 
TCGA-FS-A4FC TCGA-FS-A4FD TCGA-FW-A3I3 TCGA-FW-A3TU TCGA-GN-A264 TCGA-GN-A268 
        6.41         2.27         0.20         0.13        31.33        15.39 

$subtype2
TCGA-D3-A1Q3 TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A1QA TCGA-D3-A1QB TCGA-D3-A2J7 
        8.52        98.76        22.55        31.40        68.09        85.32 
TCGA-D3-A2J9 TCGA-D3-A2JB TCGA-D3-A2JC TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JH 
       21.14        68.25        69.90        11.41        30.87        25.38 
TCGA-D3-A2JL TCGA-D3-A2JO TCGA-D3-A2JP TCGA-D3-A3BZ TCGA-D3-A3C8 TCGA-D3-A3CB 
       77.00        49.25        45.07        99.55        34.13        82.03 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MR TCGA-D3-A51E TCGA-D3-A51F TCGA-D3-A51H 
       13.32        24.00       103.59        80.22        42.71        15.09 
TCGA-D3-A51J TCGA-D3-A51N TCGA-D3-A51T TCGA-D3-A5GO TCGA-D3-A5GR TCGA-D3-A5GS 
       41.13         8.88        13.94        47.87         2.01         6.97 
TCGA-D3-A5GU TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I0 
       23.11         4.01         2.86        48.79        35.80        10.03 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I5 TCGA-DA-A1IB TCGA-DA-A3F3 TCGA-DA-A3F8 
       39.19        13.68        44.52        22.36         7.00        14.83 
TCGA-EB-A44Q TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A184 TCGA-EE-A20F TCGA-EE-A20I 
        0.20         1.12        12.20         5.13         5.13         1.18 
TCGA-EE-A29C TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29S 
       37.97         4.41        27.12         9.47        12.03         9.99 
TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 
        6.48         8.09        11.31        25.28        23.90         8.94 
TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ 
       39.39        10.13        34.92        21.17         3.91        19.43 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2MH TCGA-EE-A2MJ 
       16.01        10.88         9.67         8.68         7.96        63.42 
TCGA-EE-A2MK TCGA-EE-A3AA TCGA-EE-A3AC TCGA-ER-A193 TCGA-ER-A198 TCGA-ER-A199 
      111.78       124.31        25.84        31.40        38.37         5.72 
TCGA-ER-A19F TCGA-ER-A19G TCGA-ER-A19H TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A19P 
       11.11       114.15        34.88        28.64        42.84        34.68 
TCGA-ER-A19Q TCGA-ER-A1A1 TCGA-ER-A2NF TCGA-ER-A2NG TCGA-ER-A2NH TCGA-FR-A3YN 
        9.57        78.44        13.05        12.62        11.74         5.95 
TCGA-FR-A44A TCGA-FS-A1Z0 TCGA-FS-A1Z4 TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZT 
       72.16        23.80        15.52        52.11         8.68        40.64 
TCGA-FS-A1ZW TCGA-FS-A4F4 TCGA-FS-A4F8 TCGA-FW-A3R5 TCGA-GF-A4EO TCGA-GN-A265 
       27.39         7.36        14.20         1.02         7.23        84.72 
TCGA-GN-A267 TCGA-GN-A26D 
       16.21        14.70 

$subtype3
TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A2J8 TCGA-D3-A2JA 
      111.09        32.55        70.16        28.08         8.38        88.50 
TCGA-D3-A2JN TCGA-D3-A3C6 TCGA-D3-A3C7 TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D3-A51R 
       56.19        15.25        33.11         9.30         5.39        20.48 
TCGA-D3-A5GN TCGA-DA-A1HY TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A3F5 TCGA-EE-A20B 
       52.04        51.12        36.69        25.15        17.56        36.07 
TCGA-EE-A20C TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29W 
        4.34         9.24         7.96         8.12         8.84         8.68 
TCGA-EE-A2A5 TCGA-EE-A2GD TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GS 
        9.67        17.98        28.31        33.83        30.84        13.02 
TCGA-EE-A2M5 TCGA-EE-A3AG TCGA-EE-A3J8 TCGA-ER-A195 TCGA-ER-A19D TCGA-ER-A19E 
        8.84        15.95        16.14        18.64         3.52        11.90 
TCGA-ER-A19L TCGA-ER-A2NC TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FS-A1YW TCGA-FS-A1YX 
       12.99        12.00         6.58         1.71        64.47         3.45 
TCGA-FS-A1Z3 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZC TCGA-FS-A1ZD TCGA-FS-A1ZF 
       14.24         7.30         7.27        20.38         8.22        11.08 
TCGA-FS-A1ZH TCGA-FS-A1ZM TCGA-FS-A1ZS TCGA-FS-A4FB TCGA-GF-A3OT TCGA-GN-A261 
       30.84        47.38        49.15         5.98         9.90        15.35 
TCGA-GN-A262 TCGA-GN-A266 TCGA-GN-A26A 
       24.85        10.09        12.16 

subtype1 subtype2 subtype3 
    0.13     0.20     1.71 
subtype1 subtype2 subtype3 
   95.38   124.31   111.09 
subtype1 subtype2 subtype3 
   8.745   21.155   15.250 
[1] "0.1 - 95.4 (8.7)"   "0.2 - 124.3 (21.2)" "1.7 - 111.1 (15.2)"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [13] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [25] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [31] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [37] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [43] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [61] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [67] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [73] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [85] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [91] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [97] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[121] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[133] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[139] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[145] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[157] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[163] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[169] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[175] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[181] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[187] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[193] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[199] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[205] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [13] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [25] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [31] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [37] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [43] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [61] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [67] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [73] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [85] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [91] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [97] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[121] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[133] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[139] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[145] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[157] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[163] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[169] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[175] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[181] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[187] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[193] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[199] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[205] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [13] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [25] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [31] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [37] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [43] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [61] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [67] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [73] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [85] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [91] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [97] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[121] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[133] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[139] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[145] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[157] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[163] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[169] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[175] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[181] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[187] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[193] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[199] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[205] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
D6V2, survival
          sevent
clus2       0  1
  subtype1 18 33
  subtype2 77 43
  subtype3 26 38
subtype1 subtype2 subtype3 
      51      120       64 
subtype1 subtype2 subtype3 
      33       43       38 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A2J6 TCGA-D3-A2JK TCGA-D3-A3CC TCGA-D3-A3ML TCGA-D3-A3MU 
         504         1320          368         2644          421          819 
TCGA-D3-A51K TCGA-D3-A5GL TCGA-DA-A1I4 TCGA-DA-A1IA TCGA-DA-A1IC TCGA-EB-A44R 
         559         3373         1093         2005         2071          309 
TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A185 TCGA-EE-A29D TCGA-EE-A29E 
         907          263          447          150          425         1205 
TCGA-EE-A29G TCGA-EE-A29L TCGA-EE-A29V TCGA-EE-A2GR TCGA-EE-A2MS TCGA-EE-A2MT 
        2191           78          787          435         4150         1265 
TCGA-EE-A3AD TCGA-EE-A3AF TCGA-ER-A197 TCGA-ER-A19A TCGA-ER-A19C TCGA-ER-A19J 
         112          420          423         2365         1487          195 
TCGA-ER-A3ES TCGA-FS-A1YY TCGA-FS-A1ZB TCGA-FS-A1ZE TCGA-FS-A1ZG TCGA-FS-A1ZJ 
        7514         6953         1486         1225          295         1441 
TCGA-FS-A1ZK TCGA-FS-A1ZR TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 
         728          347          808          823          822         2366 
TCGA-FS-A4F2 TCGA-FS-A4F5 TCGA-FS-A4F9 TCGA-FS-A4FC TCGA-FS-A4FD TCGA-FW-A3I3 
        1525          874          378         1504         2369            6 
TCGA-FW-A3TU TCGA-GN-A264 TCGA-GN-A268 
        1446         3587         1909 

$subtype2
TCGA-D3-A1Q3 TCGA-D3-A1Q7 TCGA-D3-A1Q9 TCGA-D3-A1QA TCGA-D3-A1QB TCGA-D3-A2J7 
         507         3687          961         2326         2512         3136 
TCGA-D3-A2J9 TCGA-D3-A2JB TCGA-D3-A2JC TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JH 
         723         5110         2126          361         1483          951 
TCGA-D3-A2JL TCGA-D3-A2JO TCGA-D3-A2JP TCGA-D3-A3BZ TCGA-D3-A3C8 TCGA-D3-A3CB 
        4748         1547         1371         3516         1038         5052 
TCGA-D3-A3CE TCGA-D3-A3CF TCGA-D3-A3MR TCGA-D3-A51E TCGA-D3-A51F TCGA-D3-A51H 
        1832          746         3151         4923         1329         1221 
TCGA-D3-A51J TCGA-D3-A51N TCGA-D3-A51T TCGA-D3-A5GO TCGA-D3-A5GR TCGA-D3-A5GS 
        4012          305          458         4195         5052          226 
TCGA-D3-A5GU TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 
        3808         4609         1663          111          194          345 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
          98         1487         1096          620         5926         5370 
TCGA-DA-A1I5 TCGA-DA-A1IB TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EB-A44Q TCGA-EE-A181 
        3265          713          319          477           28         1026 
TCGA-EE-A183 TCGA-EE-A184 TCGA-EE-A20F TCGA-EE-A20I TCGA-EE-A29C TCGA-EE-A29H 
         817         2073         2399          412         1455          979 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29X 
        1349          565         1716         1700        10523          545 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC 
        1424         2401          743         1787         1446         1315 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL 
        4134         5536          686         2717         1664         1673 
TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M8 TCGA-EE-A2MD TCGA-EE-A2ME 
         595         2042         3931          601         1438         3141 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MN 
        3138          516         2927         4403         6175         1446 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AC 
        7562         1315         3150         1620         3781          786 
TCGA-EE-A3AE TCGA-ER-A193 TCGA-ER-A198 TCGA-ER-A199 TCGA-ER-A19F TCGA-ER-A19G 
         813          955         1543          279          802         8180 
TCGA-ER-A19H TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A19P TCGA-ER-A19Q TCGA-ER-A1A1 
        4634         1857         1340         4930         1548         2433 
TCGA-ER-A2NF TCGA-ER-A2NG TCGA-ER-A2NH TCGA-FR-A3YN TCGA-FR-A44A TCGA-FS-A1Z0 
         497          951          975         2448         4885         6163 
TCGA-FS-A1Z4 TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZT TCGA-FS-A1ZW TCGA-FS-A4F4 
         854         2273         4062         1617         1505         2028 
TCGA-FS-A4F8 TCGA-FW-A3R5 TCGA-GF-A4EO TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A26D 
        5318          699          220         2577         1959         1204 

$subtype3
TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1Q8 TCGA-D3-A2J8 TCGA-D3-A2JA 
        3408         3423         2184          854         1992         3514 
TCGA-D3-A2JN TCGA-D3-A3C6 TCGA-D3-A3C7 TCGA-D3-A3MO TCGA-D3-A3MV TCGA-D3-A51R 
        1709         1765         1007          283          653         1572 
TCGA-D3-A5GN TCGA-DA-A1HY TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A3F5 TCGA-EE-A20B 
        4140         3564         1861         1640         6553         3335 
TCGA-EE-A20C TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29Q TCGA-EE-A29R TCGA-EE-A29W 
        4600         5118         1926         1136          440         5217 
TCGA-EE-A2A5 TCGA-EE-A2GD TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP 
        1194         9567         2296         2766         3101          422 
TCGA-EE-A2GS TCGA-EE-A2M5 TCGA-EE-A2M7 TCGA-EE-A2MC TCGA-EE-A2MI TCGA-EE-A2MM 
        1691          659          876         1871         6224         5106 
TCGA-EE-A3AB TCGA-EE-A3AG TCGA-EE-A3AH TCGA-EE-A3J8 TCGA-ER-A195 TCGA-ER-A19D 
        3733          714         4221         1044         1078          383 
TCGA-ER-A19E TCGA-ER-A19L TCGA-ER-A2NC TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FS-A1YW 
         396         3987         1339         2443         1010         6598 
TCGA-FS-A1YX TCGA-FS-A1Z3 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZC TCGA-FS-A1ZD 
        1478          636          236          842        10870         1628 
TCGA-FS-A1ZF TCGA-FS-A1ZH TCGA-FS-A1ZM TCGA-FS-A1ZS TCGA-FS-A4FB TCGA-GF-A3OT 
         470          995         3080         4525          813          301 
TCGA-GN-A261 TCGA-GN-A262 TCGA-GN-A266 TCGA-GN-A26A 
        2324         3664          307          988 

subtype1 subtype2 subtype3 
       6       28      236 
subtype1 subtype2 subtype3 
    7514    10523    10870 
subtype1 subtype2 subtype3 
   874.0   1547.5   1737.0 
[1] "6.0 - 7514.0 (874.0)"     "28.0 - 10523.0 (1547.5)" 
[3] "236.0 - 10870.0 (1737.0)"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [13] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [25] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [31] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [37] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [43] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [67] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [73] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [85] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [97] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[103] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[127] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[139] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[151] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[157] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[163] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[169] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[175] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[181] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[187] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[193] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[199] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[205] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[211] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[217] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[223] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[229] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[235] "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [13] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [25] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [31] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [37] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [43] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [67] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [73] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [85] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [97] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[103] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[127] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[139] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[151] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[157] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[163] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[169] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[175] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[181] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[187] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[193] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[199] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[205] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[211] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[217] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[223] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[229] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[235] "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [13] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [25] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [31] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [37] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [43] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [67] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [73] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [85] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [97] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[103] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[127] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[139] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[151] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[157] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[163] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[169] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[175] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[181] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[187] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[193] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[199] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[205] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[211] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[217] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[223] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[229] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[235] "subtype2"
D6V3, continuous
          vv
clus       DISTANT METASTASIS PRIMARY TUMOR
  subtype1                 15             0
  subtype2                  9             1
  subtype3                  8             0
          vv
clus       REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE REGIONAL LYMPH NODE
  subtype1                                        10                  26
  subtype2                                        13                 100
  subtype3                                        26                  32
D6V4, multiclass
          vv
clus       I OR II NOS STAGE 0 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  subtype1           1       0       2        1        3        5         2
  subtype2           5       1      12        9       11        7         5
  subtype3           3       3       6        0        8        5         3
          vv
clus       STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  subtype1         6         4         0          3          7         10
  subtype2         3         3        13          2          9         22
  subtype3         3         2         7          5          4          7
          vv
clus       STAGE IV
  subtype1        3
  subtype2        4
  subtype3        3
D6V5, multiclass
          vv
clus       T0+T1 T2 T3 T4
  subtype1     2  9 14 18
  subtype2    33 24 18 21
  subtype3     7 21 14 10
D6V6, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 25  6  9  6
  subtype2 67 19 12 17
  subtype3 35 14  6  5
D6V7, multiclass
          vv
clus        M0  M1 M1A M1B M1C
  subtype1  44   3   0   0   0
  subtype2 111   0   1   1   4
  subtype3  57   0   1   1   1
D6V8, multiclass
D6V9, binary
          cls
clus        0  1
  subtype1 21 17
  subtype2 52 27
  subtype3 18 17
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   21   17
  subtype2   52   27
  subtype3   18   17
     clus
vv    subtype1 subtype2 subtype3
  NO        21       52       18
  YES       17       27       17
D6V10, binary
          cls
clus         0   1
  subtype1   5  47
  subtype2  17 106
  subtype3   8  58
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5   47
  subtype2   17  106
  subtype3    8   58
     clus
vv    subtype1 subtype2 subtype3
  NO         5       17        8
  YES       47      106       58
D6V11, continuous
D6V12, binary
          cls
clus        0  1
  subtype1 20 32
  subtype2 47 76
  subtype3 28 38
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   20   32
  subtype2   47   76
  subtype3   28   38
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       20       47       28
  MALE         32       76       38

Clustering(7) Variable = MIRSEQ_CNMF
D7V1, survival
          sevent
clus2       0  1
  subtype1 33 15
  subtype2 35 49
  subtype3 36 36
subtype1 subtype2 subtype3 
      48       84       72 
subtype1 subtype2 subtype3 
      15       49       36 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2JH TCGA-D3-A2JO 
       16.47        32.55        28.08        22.55        25.38        49.25 
TCGA-D3-A3C7 TCGA-D3-A3CB TCGA-D3-A3CE TCGA-D3-A3MR TCGA-D3-A3MU TCGA-D3-A3MV 
       33.11        82.03        13.32       103.59        13.55         5.39 
TCGA-D3-A51N TCGA-D3-A51R TCGA-D3-A51T TCGA-D3-A5GN TCGA-DA-A1I0 TCGA-DA-A1I8 
        8.88        20.48        13.94        52.04        10.03        25.15 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EB-A44Q TCGA-EB-A44R TCGA-EE-A182 TCGA-EE-A20B 
       17.56        14.83         0.20         0.20         1.35        36.07 
TCGA-EE-A20C TCGA-EE-A29P TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A2 
        4.34        12.03         6.48         8.09        11.31        23.90 
TCGA-EE-A2GB TCGA-EE-A2GI TCGA-EE-A2GU TCGA-EE-A3AC TCGA-EE-A3AG TCGA-EE-A3J8 
       39.39         3.91         8.68        25.84        15.95        16.14 
TCGA-ER-A19F TCGA-ER-A19G TCGA-ER-A1A1 TCGA-ER-A2NF TCGA-FS-A1ZC TCGA-FS-A1ZH 
       11.11       114.15        78.44        13.05        20.38        30.84 
TCGA-FW-A3I3 TCGA-FW-A3TU TCGA-GF-A4EO TCGA-GN-A262 TCGA-GN-A265 TCGA-GN-A26D 
        0.20         0.13         7.23        24.85        84.72        14.70 

$subtype2
TCGA-D3-A1Q3 TCGA-D3-A1QA TCGA-D3-A2J6 TCGA-D3-A2JB TCGA-D3-A2JF TCGA-D3-A2JK 
        8.52        31.40        10.26        68.25        30.87         6.35 
TCGA-D3-A2JL TCGA-D3-A2JP TCGA-D3-A3C6 TCGA-D3-A3CF TCGA-D3-A3ML TCGA-D3-A51E 
       77.00        45.07        15.25        24.00         6.28        80.22 
TCGA-D3-A51J TCGA-D3-A51K TCGA-D3-A5GL TCGA-D3-A5GS TCGA-D3-A5GU TCGA-D9-A3Z1 
       41.13        17.72        95.38         6.97        23.11         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1IA 
        2.86        48.79        35.80        39.19        13.68         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F3 TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 
       22.36         6.64         7.00         6.31         1.12        12.20 
TCGA-EE-A184 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A20I TCGA-EE-A29D TCGA-EE-A29E 
        5.13         4.27         5.13         1.18        11.15        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29R TCGA-EE-A2A6 TCGA-EE-A2GC 
        4.41         1.08        27.12         8.84         8.94        10.13 
TCGA-EE-A2GJ TCGA-EE-A2GL TCGA-EE-A2GN TCGA-EE-A2GR TCGA-EE-A2GT TCGA-EE-A2MH 
       19.43        10.88        33.83         1.15         9.67         7.96 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A3AA TCGA-EE-A3AF TCGA-ER-A197 TCGA-ER-A198 
       63.42       111.78       124.31        13.81        12.95        38.37 
TCGA-ER-A19C TCGA-ER-A19J TCGA-ER-A19P TCGA-ER-A19Q TCGA-ER-A2NG TCGA-ER-A3ES 
        3.81         4.18        34.68         9.57        12.62         9.04 
TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1ZF 
        1.71         5.95        64.47        23.80        14.24        11.08 
TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR 
        7.17        12.92        12.89        52.11         8.68         8.81 
TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 
       40.64         8.68        27.39         0.82         5.23        53.82 
TCGA-FS-A4F4 TCGA-FS-A4F5 TCGA-FS-A4FB TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A268 
        7.36        28.73         5.98        31.33        16.21        15.39 

$subtype3
TCGA-D3-A1Q4 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1QB TCGA-D3-A2J7 TCGA-D3-A2J8 
      111.09        70.16        98.76        68.09        85.32         8.38 
TCGA-D3-A2J9 TCGA-D3-A2JA TCGA-D3-A2JC TCGA-D3-A2JD TCGA-D3-A2JN TCGA-D3-A3BZ 
       21.14        88.50        69.90        11.41        56.19        99.55 
TCGA-D3-A3C8 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A51F TCGA-D3-A51H TCGA-DA-A1HY 
       34.13        61.38         9.30        42.71        15.09        51.12 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A3F2 TCGA-EE-A17X TCGA-EE-A20H 
        9.99        44.52        36.69        19.36        11.57         9.24 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29G TCGA-EE-A29N TCGA-EE-A29Q TCGA-EE-A29S 
        7.96        37.97         8.55         9.47         8.12         9.99 
TCGA-EE-A29V TCGA-EE-A29W TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2GD TCGA-EE-A2GE 
        2.43         8.68        25.28         9.67        17.98        34.92 
TCGA-EE-A2GH TCGA-EE-A2GK TCGA-EE-A2GM TCGA-EE-A2GO TCGA-EE-A2GS TCGA-EE-A2M5 
       21.17        16.01        28.31        30.84        13.02         8.84 
TCGA-ER-A193 TCGA-ER-A195 TCGA-ER-A199 TCGA-ER-A19A TCGA-ER-A19D TCGA-ER-A19E 
       31.40        18.64         5.72        76.41         3.52        11.90 
TCGA-ER-A19H TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A2NC TCGA-ER-A2NH 
       34.88        12.99        28.64        42.84        12.00        11.74 
TCGA-ER-A3ET TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA 
        6.58         3.45        11.05        15.52         7.30         7.27 
TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZM TCGA-FS-A1ZS TCGA-FS-A4F8 
        3.39         8.22        19.53        47.38        49.15        14.20 
TCGA-FS-A4FD TCGA-FW-A3R5 TCGA-GF-A3OT TCGA-GN-A261 TCGA-GN-A266 TCGA-GN-A26A 
        2.27         1.02         9.90        15.35        10.09        12.16 

subtype1 subtype2 subtype3 
    0.13     0.82     1.02 
subtype1 subtype2 subtype3 
  114.15   124.31   111.09 
subtype1 subtype2 subtype3 
  16.045   12.410   15.220 
[1] "0.1 - 114.2 (16.0)" "0.8 - 124.3 (12.4)" "1.0 - 111.1 (15.2)"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [19] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [25] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [31] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [43] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
 [61] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [85] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [91] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [97] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[103] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[109] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[121] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[133] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[139] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[145] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[151] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[157] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[169] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[175] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[193] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[199] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [19] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [25] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [31] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [43] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
 [61] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [85] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [91] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [97] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[103] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[109] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[121] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[133] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[139] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[145] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[151] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[157] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[169] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[175] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[193] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[199] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [19] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [25] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [31] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [43] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
 [61] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [85] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [91] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [97] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[103] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[109] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[121] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[133] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[139] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[145] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[151] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[157] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[169] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[175] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[193] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[199] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
D7V2, survival
          sevent
clus2       0  1
  subtype1 37 18
  subtype2 42 55
  subtype3 38 40
subtype1 subtype2 subtype3 
      55       97       78 
subtype1 subtype2 subtype3 
      18       55       40 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2JH TCGA-D3-A2JO 
         504         3423          854          961          951         1547 
TCGA-D3-A3C7 TCGA-D3-A3CB TCGA-D3-A3CE TCGA-D3-A3MR TCGA-D3-A3MU TCGA-D3-A3MV 
        1007         5052         1832         3151          819          653 
TCGA-D3-A51N TCGA-D3-A51R TCGA-D3-A51T TCGA-D3-A5GN TCGA-D9-A1JX TCGA-DA-A1I0 
         305         1572          458         4140          194          620 
TCGA-DA-A1I8 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EB-A44Q TCGA-EB-A44R TCGA-EE-A182 
        1640         6553          477           28          309          447 
TCGA-EE-A20B TCGA-EE-A20C TCGA-EE-A29P TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A0 
        3335         4600         1716        10523          545         1424 
TCGA-EE-A2A2 TCGA-EE-A2GB TCGA-EE-A2GI TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 
         743         1446          686         2042         3931          876 
TCGA-EE-A2MD TCGA-EE-A2ML TCGA-EE-A2MP TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AG 
        1438         6175         7562         3733          786          714 
TCGA-EE-A3J8 TCGA-ER-A19F TCGA-ER-A19G TCGA-ER-A1A1 TCGA-ER-A2NF TCGA-FS-A1ZC 
        1044          802         8180         2433          497        10870 
TCGA-FS-A1ZH TCGA-FW-A3I3 TCGA-FW-A3TU TCGA-GF-A4EO TCGA-GN-A262 TCGA-GN-A265 
         995            6         1446          220         3664         2577 
TCGA-GN-A26D 
        1204 

$subtype2
TCGA-D3-A1Q3 TCGA-D3-A1QA TCGA-D3-A2J6 TCGA-D3-A2JB TCGA-D3-A2JF TCGA-D3-A2JK 
         507         2326         1320         5110         1483          368 
TCGA-D3-A2JL TCGA-D3-A2JP TCGA-D3-A3C6 TCGA-D3-A3CF TCGA-D3-A3ML TCGA-D3-A51E 
        4748         1371         1765          746          421         4923 
TCGA-D3-A51J TCGA-D3-A51K TCGA-D3-A5GL TCGA-D3-A5GS TCGA-D3-A5GU TCGA-D9-A148 
        4012          559         3373          226         3808         4609 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW 
        1663          111          345           98         1487         1096 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F3 
        5926         5370         2005          713         2071          319 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A184 TCGA-EE-A185 TCGA-EE-A20F 
         263         1026          817         2073          150         2399 
TCGA-EE-A20I TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
         412          425         1205          979           78         1349 
TCGA-EE-A29R TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GJ TCGA-EE-A2GL TCGA-EE-A2GN 
         440         1787         1315         2717         1673         2766 
TCGA-EE-A2GR TCGA-EE-A2GT TCGA-EE-A2M8 TCGA-EE-A2ME TCGA-EE-A2MH TCGA-EE-A2MJ 
         435          595          601         3141          516         2927 
TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MQ TCGA-EE-A2MS TCGA-EE-A2MT 
        4403         5106         1446         1315         4150         1265 
TCGA-EE-A3AA TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A197 
        3781          112          813          420         4221          423 
TCGA-ER-A198 TCGA-ER-A19C TCGA-ER-A19J TCGA-ER-A19P TCGA-ER-A19Q TCGA-ER-A2NG 
        1543         1487          195         4930         1548          951 
TCGA-ER-A3ES TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1Z0 TCGA-FS-A1Z3 
        7514         1010         2448         6598         6163          636 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZQ 
         470          295         1441          728         2273         4062 
TCGA-FS-A1ZR TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ 
         347         1617          808         1505          823          822 
TCGA-FS-A4F0 TCGA-FS-A4F4 TCGA-FS-A4F5 TCGA-FS-A4FB TCGA-GN-A264 TCGA-GN-A267 
        2366         2028          874          813         3587         1959 
TCGA-GN-A268 
        1909 

$subtype3
TCGA-D3-A1Q4 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A1QB TCGA-D3-A2J7 TCGA-D3-A2J8 
        3408         2184         3687         2512         3136         1992 
TCGA-D3-A2J9 TCGA-D3-A2JA TCGA-D3-A2JC TCGA-D3-A2JD TCGA-D3-A2JN TCGA-D3-A3BZ 
         723         3514         2126          361         1709         3516 
TCGA-D3-A3C8 TCGA-D3-A3CC TCGA-D3-A3MO TCGA-D3-A51F TCGA-D3-A51H TCGA-DA-A1HY 
        1038         2644          283         1329         1221         3564 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A3F2 TCGA-EE-A17X TCGA-EE-A20H 
        1093         3265         1861          870          907         5118 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29G TCGA-EE-A29N TCGA-EE-A29Q TCGA-EE-A29S 
        1926         1455         2191          565         1136         1700 
TCGA-EE-A29V TCGA-EE-A29W TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2GD TCGA-EE-A2GE 
         787         5217         2401         1194         9567         4134 
TCGA-EE-A2GH TCGA-EE-A2GK TCGA-EE-A2GM TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GS 
        5536         1664         2296         3101          422         1691 
TCGA-EE-A2M5 TCGA-EE-A2MC TCGA-EE-A2MG TCGA-EE-A2MI TCGA-EE-A2MR TCGA-EE-A2MU 
         659         1871         3138         6224         3150         1620 
TCGA-ER-A193 TCGA-ER-A195 TCGA-ER-A199 TCGA-ER-A19A TCGA-ER-A19D TCGA-ER-A19E 
         955         1078          279         2365          383          396 
TCGA-ER-A19H TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A2NC TCGA-ER-A2NH 
        4634         3987         1857         1340         1339          975 
TCGA-ER-A3ET TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA 
        2443         1478         6953          854          236          842 
TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZM TCGA-FS-A1ZS TCGA-FS-A4F8 
        1486         1628         1225         3080         4525         5318 
TCGA-FS-A4FD TCGA-FW-A3R5 TCGA-GF-A3OT TCGA-GN-A261 TCGA-GN-A266 TCGA-GN-A26A 
        2369          699          301         2324          307          988 

subtype1 subtype2 subtype3 
       6       78      236 
subtype1 subtype2 subtype3 
   10870     7514     9567 
subtype1 subtype2 subtype3 
  1204.0   1371.0   1704.5 
[1] "6.0 - 10870.0 (1204.0)"  "78.0 - 7514.0 (1371.0)" 
[3] "236.0 - 9567.0 (1704.5)"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [19] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [25] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [31] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [43] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [61] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
 [73] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [79] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [85] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [97] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[103] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[109] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[115] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[121] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[127] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[133] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[139] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[145] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[151] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[157] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[163] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[169] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[175] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[181] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[193] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[199] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[205] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[217] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[223] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[229] "subtype3" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [19] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [25] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [31] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [43] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [61] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
 [73] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [79] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [85] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [97] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[103] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[109] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[115] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[121] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[127] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[133] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[139] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[145] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[151] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[157] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[163] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[169] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[175] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[181] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[193] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[199] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[205] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[217] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[223] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[229] "subtype3" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [19] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [25] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [31] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [43] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [61] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
 [73] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [79] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [85] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [97] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[103] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[109] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[115] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[121] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[127] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[133] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[139] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[145] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[151] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[157] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[163] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[169] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[175] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[181] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[193] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[199] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[205] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[217] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[223] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[229] "subtype3" "subtype1"
D7V3, continuous
          vv
clus       DISTANT METASTASIS PRIMARY TUMOR
  subtype1                  5             1
  subtype2                 14             0
  subtype3                 11             0
          vv
clus       REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE REGIONAL LYMPH NODE
  subtype1                                        10                  41
  subtype2                                        13                  69
  subtype3                                        26                  45
D7V4, multiclass
          vv
clus       I OR II NOS STAGE 0 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  subtype1           4       1       3        2        2        4         2
  subtype2           3       1       6        6       10        8         4
  subtype3           2       2      11        2       10        3         3
          vv
clus       STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  subtype1         0         2         3          2          6         11
  subtype2         7         3         7          3         10         13
  subtype3         5         3         9          5          5         14
          vv
clus       STAGE IV
  subtype1        4
  subtype2        4
  subtype3        2
D7V5, multiclass
          vv
clus       T0+T1 T2 T3 T4
  subtype1    12  6  9 11
  subtype2    16 23 21 19
  subtype3    13 25 14 17
D7V6, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 23  9  6 10
  subtype2 54 15 11  9
  subtype3 46 14 11  8
D7V7, multiclass
          vv
clus       M0 M1 M1A M1B M1C
  subtype1 44  1   1   1   2
  subtype2 86  1   1   1   2
  subtype3 77  1   0   0   1
D7V8, multiclass
D7V9, binary
          cls
clus        0  1
  subtype1 14 15
  subtype2 45 24
  subtype3 31 20
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   14   15
  subtype2   45   24
  subtype3   31   20
     clus
vv    subtype1 subtype2 subtype3
  NO        14       45       31
  YES       15       24       20
D7V10, binary
          cls
clus        0  1
  subtype1 12 45
  subtype2 10 87
  subtype3  8 74
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   12   45
  subtype2   10   87
  subtype3    8   74
     clus
vv    subtype1 subtype2 subtype3
  NO        12       10        8
  YES       45       87       74
D7V11, continuous
D7V12, binary
          cls
clus        0  1
  subtype1 27 30
  subtype2 38 59
  subtype3 26 56
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   27   30
  subtype2   38   59
  subtype3   26   56
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       27       38       26
  MALE         30       59       56

Clustering(8) Variable = MIRSEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2       0  1
  subtype1 17  7
  subtype2 31 34
  subtype3 56 59
subtype1 subtype2 subtype3 
      24       65      115 
subtype1 subtype2 subtype3 
       7       34       59 
$subtype1
TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2JH TCGA-D3-A2JO TCGA-D3-A3MR TCGA-D3-A3MV 
       28.08        22.55        25.38        49.25       103.59         5.39 
TCGA-D3-A51R TCGA-D3-A5GN TCGA-DA-A1I0 TCGA-DA-A3F8 TCGA-EB-A44R TCGA-EE-A182 
       20.48        52.04        10.03        14.83         0.20         1.35 
TCGA-EE-A20B TCGA-EE-A29P TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2GB TCGA-EE-A2GU 
       36.07        12.03        11.31        23.90        39.39         8.68 
TCGA-EE-A3AG TCGA-EE-A3J8 TCGA-ER-A19G TCGA-FS-A1ZC TCGA-FW-A3I3 TCGA-GN-A265 
       15.95        16.14       114.15        20.38         0.20        84.72 

$subtype2
TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1QB TCGA-D3-A2J8 TCGA-D3-A2J9 
      111.09        32.55        70.16        68.09         8.38        21.14 
TCGA-D3-A2JA TCGA-D3-A2JC TCGA-D3-A2JD TCGA-D3-A2JN TCGA-D3-A3BZ TCGA-D3-A3C7 
       88.50        69.90        11.41        56.19        99.55        33.11 
TCGA-D3-A3C8 TCGA-D3-A3CE TCGA-D3-A3MO TCGA-D3-A51F TCGA-D3-A51H TCGA-DA-A1HY 
       34.13        13.32         9.30        42.71        15.09        51.12 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A3F2 TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A20C 
       36.69        25.15        19.36        17.56        11.57         4.34 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29Q TCGA-EE-A29T TCGA-EE-A29W 
        9.24         7.96        37.97         8.12         6.48         8.68 
TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2GK TCGA-EE-A2GM TCGA-EE-A2GO TCGA-EE-A2M5 
       25.28         9.67        16.01        28.31        30.84         8.84 
TCGA-ER-A193 TCGA-ER-A195 TCGA-ER-A199 TCGA-ER-A19A TCGA-ER-A19D TCGA-ER-A19E 
       31.40        18.64         5.72        76.41         3.52        11.90 
TCGA-ER-A19H TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A2NC TCGA-ER-A2NH 
       34.88        12.99        42.84        78.44        12.00        11.74 
TCGA-FS-A1YY TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD 
       11.05        15.52         7.30         7.27         3.39         8.22 
TCGA-FS-A1ZE TCGA-FS-A1ZH TCGA-FS-A1ZM TCGA-FS-A1ZS TCGA-FS-A4F8 TCGA-FW-A3R5 
       19.53        30.84        47.38        49.15        14.20         1.02 
TCGA-GF-A3OT TCGA-GF-A4EO TCGA-GN-A261 TCGA-GN-A266 TCGA-GN-A26A 
        9.90         7.23        15.35        10.09        12.16 

$subtype3
TCGA-D3-A1Q1 TCGA-D3-A1Q3 TCGA-D3-A1Q7 TCGA-D3-A1QA TCGA-D3-A2J6 TCGA-D3-A2J7 
       16.47         8.52        98.76        31.40        10.26        85.32 
TCGA-D3-A2JB TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A2JL TCGA-D3-A2JP TCGA-D3-A3C6 
       68.25        30.87         6.35        77.00        45.07        15.25 
TCGA-D3-A3CB TCGA-D3-A3CC TCGA-D3-A3CF TCGA-D3-A3ML TCGA-D3-A3MU TCGA-D3-A51E 
       82.03        61.38        24.00         6.28        13.55        80.22 
TCGA-D3-A51J TCGA-D3-A51K TCGA-D3-A51N TCGA-D3-A51T TCGA-D3-A5GL TCGA-D3-A5GS 
       41.13        17.72         8.88        13.94        95.38         6.97 
TCGA-D3-A5GU TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I1 
       23.11         4.01         2.86        48.79        35.80        39.19 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC 
       13.68         9.99        44.52         4.93        22.36         6.64 
TCGA-DA-A3F3 TCGA-EB-A44Q TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A184 
        7.00         0.20         6.31         1.12        12.20         5.13 
TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A20I TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29G 
        4.27         5.13         1.18        11.15        38.63         8.55 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29R TCGA-EE-A29S 
        4.41         1.08        27.12         9.47         8.84         9.99 
TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE 
        2.43         8.09         8.94        10.13        17.98        34.92 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GL TCGA-EE-A2GN TCGA-EE-A2GR 
       21.17         3.91        19.43        10.88        33.83         1.15 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A3AA 
       13.02         9.67         7.96        63.42       111.78       124.31 
TCGA-EE-A3AC TCGA-EE-A3AF TCGA-ER-A197 TCGA-ER-A198 TCGA-ER-A19C TCGA-ER-A19F 
       25.84        13.81        12.95        38.37         3.81        11.11 
TCGA-ER-A19J TCGA-ER-A19M TCGA-ER-A19P TCGA-ER-A19Q TCGA-ER-A2NF TCGA-ER-A2NG 
        4.18        28.64        34.68         9.57        13.05        12.62 
TCGA-ER-A3ES TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX 
        9.04         6.58         1.71         5.95        64.47         3.45 
TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZK 
       23.80        14.24        11.08         7.17        12.92        12.89 
TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
       52.11         8.68         8.81        40.64         8.68        27.39 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F4 TCGA-FS-A4F5 TCGA-FS-A4FB 
        0.82         5.23        53.82         7.36        28.73         5.98 
TCGA-FS-A4FD TCGA-FW-A3TU TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A268 
        2.27         0.13        24.85        31.33        16.21        15.39 
TCGA-GN-A26D 
       14.70 

subtype1 subtype2 subtype3 
    0.20     1.02     0.13 
subtype1 subtype2 subtype3 
  114.15   111.09   124.31 
subtype1 subtype2 subtype3 
   20.43    15.52    12.89 
[1] "0.2 - 114.2 (20.4)" "1.0 - 111.1 (15.5)" "0.1 - 124.3 (12.9)"
  [1] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
  [7] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [13] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [19] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [25] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [31] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [49] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [55] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [61] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [67] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [73] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [79] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [85] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[103] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[115] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[121] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[133] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[139] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[145] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[151] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[169] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[175] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[187] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[193] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[199] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
  [1] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
  [7] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [13] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [19] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [25] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [31] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [49] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [55] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [61] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [67] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [73] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [79] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [85] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[103] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[115] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[121] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[133] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[139] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[145] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[151] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[169] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[175] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[187] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[193] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[199] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
  [1] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
  [7] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [13] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [19] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [25] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [31] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [49] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [55] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [61] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [67] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [73] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [79] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [85] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[103] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[115] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[121] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[133] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[139] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[145] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[151] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[169] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[175] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[187] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[193] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[199] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
D8V2, survival
          sevent
clus2       0  1
  subtype1 18  9
  subtype2 34 37
  subtype3 65 67
subtype1 subtype2 subtype3 
      27       71      132 
subtype1 subtype2 subtype3 
       9       37       67 
$subtype1
TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2JH TCGA-D3-A2JO TCGA-D3-A3MR TCGA-D3-A3MV 
         854          961          951         1547         3151          653 
TCGA-D3-A51R TCGA-D3-A5GN TCGA-D9-A1JX TCGA-DA-A1I0 TCGA-DA-A3F8 TCGA-EB-A44R 
        1572         4140          194          620          477          309 
TCGA-EE-A182 TCGA-EE-A20B TCGA-EE-A29P TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2GB 
         447         3335         1716         1424          743         1446 
TCGA-EE-A2GU TCGA-EE-A2M7 TCGA-EE-A2ML TCGA-EE-A3AG TCGA-EE-A3J8 TCGA-ER-A19G 
        2042          876         6175          714         1044         8180 
TCGA-FS-A1ZC TCGA-FW-A3I3 TCGA-GN-A265 
       10870            6         2577 

$subtype2
TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1QB TCGA-D3-A2J8 TCGA-D3-A2J9 
        3408         3423         2184         2512         1992          723 
TCGA-D3-A2JA TCGA-D3-A2JC TCGA-D3-A2JD TCGA-D3-A2JN TCGA-D3-A3BZ TCGA-D3-A3C7 
        3514         2126          361         1709         3516         1007 
TCGA-D3-A3C8 TCGA-D3-A3CE TCGA-D3-A3MO TCGA-D3-A51F TCGA-D3-A51H TCGA-DA-A1HY 
        1038         1832          283         1329         1221         3564 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A3F2 TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A20C 
        1861         1640          870         6553          907         4600 
TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29Q TCGA-EE-A29T TCGA-EE-A29W 
        5118         1926         1455         1136        10523         5217 
TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2GK TCGA-EE-A2GM TCGA-EE-A2GO TCGA-EE-A2M5 
        2401         1194         1664         2296         3101          659 
TCGA-EE-A2M6 TCGA-EE-A2MC TCGA-EE-A2MG TCGA-EE-A2MI TCGA-EE-A2MR TCGA-EE-A3AB 
        3931         1871         3138         6224         3150         3733 
TCGA-ER-A193 TCGA-ER-A195 TCGA-ER-A199 TCGA-ER-A19A TCGA-ER-A19D TCGA-ER-A19E 
         955         1078          279         2365          383          396 
TCGA-ER-A19H TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A2NC TCGA-ER-A2NH 
        4634         3987         1340         2433         1339          975 
TCGA-FS-A1YY TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD 
        6953          854          236          842         1486         1628 
TCGA-FS-A1ZE TCGA-FS-A1ZH TCGA-FS-A1ZM TCGA-FS-A1ZS TCGA-FS-A4F8 TCGA-FW-A3R5 
        1225          995         3080         4525         5318          699 
TCGA-GF-A3OT TCGA-GF-A4EO TCGA-GN-A261 TCGA-GN-A266 TCGA-GN-A26A 
         301          220         2324          307          988 

$subtype3
TCGA-D3-A1Q1 TCGA-D3-A1Q3 TCGA-D3-A1Q7 TCGA-D3-A1QA TCGA-D3-A2J6 TCGA-D3-A2J7 
         504          507         3687         2326         1320         3136 
TCGA-D3-A2JB TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A2JL TCGA-D3-A2JP TCGA-D3-A3C6 
        5110         1483          368         4748         1371         1765 
TCGA-D3-A3CB TCGA-D3-A3CC TCGA-D3-A3CF TCGA-D3-A3ML TCGA-D3-A3MU TCGA-D3-A51E 
        5052         2644          746          421          819         4923 
TCGA-D3-A51J TCGA-D3-A51K TCGA-D3-A51N TCGA-D3-A51T TCGA-D3-A5GL TCGA-D3-A5GS 
        4012          559          305          458         3373          226 
TCGA-D3-A5GU TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A3Z1 TCGA-D9-A3Z3 
        3808         4609         1663          111          345           98 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 
        1487         1096         5926         5370         1093         3265 
TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F3 TCGA-EB-A44Q TCGA-EE-A17Z 
        2005          713         2071          319           28          263 
TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A184 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A20I 
        1026          817         2073          150         2399          412 
TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29G TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
         425         1205         2191          979           78         1349 
TCGA-EE-A29N TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A6 
         565          440         1700          787          545         1787 
TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ 
        1315         9567         4134         5536          686         2717 
TCGA-EE-A2GL TCGA-EE-A2GN TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT 
        1673         2766          422          435         1691          595 
TCGA-EE-A2M8 TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2MK 
         601         1438         3141          516         2927         4403 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MS TCGA-EE-A2MT 
        5106         1446         7562         1315         4150         1265 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF 
        1620         3781          786          112          813          420 
TCGA-EE-A3AH TCGA-ER-A197 TCGA-ER-A198 TCGA-ER-A19C TCGA-ER-A19F TCGA-ER-A19J 
        4221          423         1543         1487          802          195 
TCGA-ER-A19M TCGA-ER-A19P TCGA-ER-A19Q TCGA-ER-A2NF TCGA-ER-A2NG TCGA-ER-A3ES 
        1857         4930         1548          497          951         7514 
TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1Z0 
        2443         1010         2448         6598         1478         6163 
TCGA-FS-A1Z3 TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP 
         636          470          295         1441          728         2273 
TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY 
        4062          347         1617          808         1505          823 
TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F4 TCGA-FS-A4F5 TCGA-FS-A4FB TCGA-FS-A4FD 
         822         2366         2028          874          813         2369 
TCGA-FW-A3TU TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26D 
        1446         3664         3587         1959         1909         1204 

subtype1 subtype2 subtype3 
       6      220       28 
subtype1 subtype2 subtype3 
   10870    10523     9567 
subtype1 subtype2 subtype3 
  1044.0   1709.0   1443.5 
[1] "6.0 - 10870.0 (1044.0)"   "220.0 - 10523.0 (1709.0)"
[3] "28.0 - 9567.0 (1443.5)"  
  [1] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
  [7] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [13] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [19] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [25] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [31] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [49] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [67] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [73] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [79] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [85] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[103] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[109] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[121] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[127] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[133] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[139] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[145] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[157] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[169] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[175] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[187] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[193] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[199] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[205] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[211] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[217] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[223] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[229] "subtype2" "subtype3"
  [1] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
  [7] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [13] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [19] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [25] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [31] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [49] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [67] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [73] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [79] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [85] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[103] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[109] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[121] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[127] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[133] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[139] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[145] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[157] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[169] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[175] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[187] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[193] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[199] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[205] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[211] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[217] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[223] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[229] "subtype2" "subtype3"
  [1] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
  [7] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [13] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [19] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [25] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [31] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [49] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [67] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [73] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [79] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [85] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[103] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[109] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[121] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[127] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[133] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[139] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[145] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[157] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[169] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[175] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[187] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[193] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[199] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[205] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[211] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[217] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[223] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[229] "subtype2" "subtype3"
D8V3, continuous
          vv
clus       DISTANT METASTASIS PRIMARY TUMOR
  subtype1                  3             0
  subtype2                  9             0
  subtype3                 18             1
          vv
clus       REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE REGIONAL LYMPH NODE
  subtype1                                         8                  17
  subtype2                                        19                  47
  subtype3                                        22                  91
D8V4, multiclass
          vv
clus       I OR II NOS STAGE 0 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  subtype1           1       0       1        1        1        3         2
  subtype2           3       3       9        1        7        3         2
  subtype3           5       1      10        8       14        9         5
          vv
clus       STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  subtype1         0         1         1          1          6          4
  subtype2         4         2        11          3          3         14
  subtype3         8         5         7          6         12         20
          vv
clus       STAGE IV
  subtype1        2
  subtype2        2
  subtype3        6
D8V5, multiclass
          vv
clus       T0+T1 T2 T3 T4
  subtype1     5  3  6  7
  subtype2    14 18 10 14
  subtype3    22 33 28 26
D8V6, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 12  6  4  3
  subtype2 37 12 10 10
  subtype3 74 20 14 14
D8V7, multiclass
          vv
clus        M0  M1 M1A M1B M1C
  subtype1  23   1   1   1   0
  subtype2  68   1   0   0   1
  subtype3 116   1   1   1   4
D8V8, multiclass
D8V9, binary
          cls
clus        0  1
  subtype1  9  8
  subtype2 23 16
  subtype3 58 35
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    9    8
  subtype2   23   16
  subtype3   58   35
     clus
vv    subtype1 subtype2 subtype3
  NO         9       23       58
  YES        8       16       35
D8V10, binary
          cls
clus         0   1
  subtype1   5  23
  subtype2  13  62
  subtype3  12 121
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5   23
  subtype2   13   62
  subtype3   12  121
     clus
vv    subtype1 subtype2 subtype3
  NO         5       13       12
  YES       23       62      121
D8V11, continuous
D8V12, binary
          cls
clus        0  1
  subtype1 11 17
  subtype2 25 50
  subtype3 55 78
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   11   17
  subtype2   25   50
  subtype3   55   78
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       11       25       55
  MALE         17       50       78

Clustering(9) Variable = MIRSEQ_MATURE_CNMF
D9V1, survival
          sevent
clus2       0  1
  subtype1 44 23
  subtype2 33 51
  subtype3 27 26
subtype1 subtype2 subtype3 
      67       84       53 
subtype1 subtype2 subtype3 
      23       51       26 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A1QB TCGA-D3-A2J9 
       16.47        32.55        28.08        22.55        68.09        21.14 
TCGA-D3-A2JC TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JH TCGA-D3-A2JO TCGA-D3-A3C7 
       69.90        11.41        30.87        25.38        49.25        33.11 
TCGA-D3-A3CB TCGA-D3-A3CE TCGA-D3-A3MR TCGA-D3-A3MU TCGA-D3-A3MV TCGA-D3-A51E 
       82.03        13.32       103.59        13.55         5.39        80.22 
TCGA-D3-A51H TCGA-D3-A51N TCGA-D3-A51R TCGA-D3-A5GN TCGA-DA-A1I0 TCGA-DA-A1I8 
       15.09         8.88        20.48        52.04        10.03        25.15 
TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EB-A44Q TCGA-EB-A44R TCGA-EE-A17X TCGA-EE-A182 
       17.56        14.83         0.20         0.20        11.57         1.35 
TCGA-EE-A20B TCGA-EE-A20C TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29T TCGA-EE-A29X 
       36.07         4.34        12.03         8.12         6.48         8.09 
TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GK TCGA-EE-A2GM 
       11.31        23.90         8.94        39.39        16.01        28.31 
TCGA-EE-A2GO TCGA-EE-A2GU TCGA-EE-A3AC TCGA-EE-A3AG TCGA-EE-A3J8 TCGA-ER-A199 
       30.84         8.68        25.84        15.95        16.14         5.72 
TCGA-ER-A19E TCGA-ER-A19G TCGA-ER-A19L TCGA-ER-A19N TCGA-ER-A1A1 TCGA-ER-A2NF 
       11.90       114.15        12.99        42.84        78.44        13.05 
TCGA-ER-A2NH TCGA-FS-A1Z0 TCGA-FS-A1Z4 TCGA-FS-A1ZA TCGA-FS-A1ZC TCGA-FS-A1ZW 
       11.74        23.80        15.52         7.27        20.38        27.39 
TCGA-FS-A4F8 TCGA-FW-A3I3 TCGA-FW-A3TU TCGA-GF-A4EO TCGA-GN-A262 TCGA-GN-A265 
       14.20         0.20         0.13         7.23        24.85        84.72 
TCGA-GN-A26D 
       14.70 

$subtype2
TCGA-D3-A1Q3 TCGA-D3-A1QA TCGA-D3-A2J6 TCGA-D3-A2JB TCGA-D3-A2JK TCGA-D3-A2JL 
        8.52        31.40        10.26        68.25         6.35        77.00 
TCGA-D3-A2JP TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CF TCGA-D3-A3ML TCGA-D3-A51J 
       45.07        15.25        61.38        24.00         6.28        41.13 
TCGA-D3-A51K TCGA-D3-A51T TCGA-D3-A5GL TCGA-D3-A5GS TCGA-D3-A5GU TCGA-D9-A3Z1 
       17.72        13.94        95.38         6.97        23.11         4.01 
TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1IA 
        2.86        48.79        35.80        39.19        13.68         4.93 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F3 TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 
       22.36         6.64         7.00         6.31         1.12        12.20 
TCGA-EE-A184 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A20I TCGA-EE-A29D TCGA-EE-A29E 
        5.13         4.27         5.13         1.18        11.15        38.63 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29V TCGA-EE-A2GC 
        4.41         1.08        27.12         9.47         2.43        10.13 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GL TCGA-EE-A2GN TCGA-EE-A2GR TCGA-EE-A2GT 
        3.91        19.43        10.88        33.83         1.15         9.67 
TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A3AA TCGA-EE-A3AF TCGA-ER-A197 
        7.96        63.42       111.78       124.31        13.81        12.95 
TCGA-ER-A198 TCGA-ER-A19C TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19P TCGA-ER-A19Q 
       38.37         3.81        11.11         4.18        34.68         9.57 
TCGA-ER-A2NG TCGA-ER-A3ES TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1Z3 
       12.62         9.04         1.71         5.95        64.47        14.24 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZQ 
       11.08         7.17        12.92        12.89        52.11         8.68 
TCGA-FS-A1ZR TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 
        8.81        40.64         8.68         0.82         5.23        53.82 
TCGA-FS-A4F4 TCGA-FS-A4F5 TCGA-FS-A4FB TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A268 
        7.36        28.73         5.98        31.33        16.21        15.39 

$subtype3
TCGA-D3-A1Q4 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A2J7 TCGA-D3-A2J8 TCGA-D3-A2JA 
      111.09        70.16        98.76        85.32         8.38        88.50 
TCGA-D3-A2JN TCGA-D3-A3BZ TCGA-D3-A3C8 TCGA-D3-A3MO TCGA-D3-A51F TCGA-DA-A1HY 
       56.19        99.55        34.13         9.30        42.71        51.12 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A3F2 TCGA-EE-A20H TCGA-EE-A29A 
        9.99        44.52        36.69        19.36         9.24         7.96 
TCGA-EE-A29C TCGA-EE-A29G TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29W TCGA-EE-A2A1 
       37.97         8.55         8.84         9.99         8.68        25.28 
TCGA-EE-A2A5 TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GS TCGA-EE-A2M5 
        9.67        17.98        34.92        21.17        13.02         8.84 
TCGA-ER-A193 TCGA-ER-A195 TCGA-ER-A19A TCGA-ER-A19D TCGA-ER-A19H TCGA-ER-A19M 
       31.40        18.64        76.41         3.52        34.88        28.64 
TCGA-ER-A2NC TCGA-ER-A3ET TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z7 TCGA-FS-A1ZB 
       12.00         6.58         3.45        11.05         7.30         3.39 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZH TCGA-FS-A1ZM TCGA-FS-A1ZS TCGA-FS-A4FD 
        8.22        19.53        30.84        47.38        49.15         2.27 
TCGA-FW-A3R5 TCGA-GF-A3OT TCGA-GN-A261 TCGA-GN-A266 TCGA-GN-A26A 
        1.02         9.90        15.35        10.09        12.16 

subtype1 subtype2 subtype3 
    0.13     0.82     1.02 
subtype1 subtype2 subtype3 
  114.15   124.31   111.09 
subtype1 subtype2 subtype3 
   16.01    11.13    17.98 
[1] "0.1 - 114.2 (16.0)" "0.8 - 124.3 (11.1)" "1.0 - 111.1 (18.0)"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [13] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [25] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [31] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [43] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
 [61] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [85] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [97] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[103] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[109] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[115] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[121] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[133] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[139] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[145] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[151] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[157] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[163] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[169] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[175] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[181] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[193] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[199] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [13] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [25] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [31] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [43] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
 [61] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [85] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [97] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[103] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[109] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[115] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[121] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[133] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[139] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[145] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[151] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[157] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[163] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[169] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[175] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[181] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[193] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[199] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [13] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [25] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [31] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [43] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
 [61] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [85] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [97] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[103] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[109] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[115] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[121] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[133] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[139] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[145] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[151] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[157] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[163] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[169] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[175] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[181] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[193] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[199] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
D9V2, survival
          sevent
clus2       0  1
  subtype1 49 26
  subtype2 40 56
  subtype3 28 31
subtype1 subtype2 subtype3 
      75       96       59 
subtype1 subtype2 subtype3 
      26       56       31 
$subtype1
TCGA-D3-A1Q1 TCGA-D3-A1Q5 TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A1QB TCGA-D3-A2J9 
         504         3423          854          961         2512          723 
TCGA-D3-A2JC TCGA-D3-A2JD TCGA-D3-A2JF TCGA-D3-A2JH TCGA-D3-A2JO TCGA-D3-A3C7 
        2126          361         1483          951         1547         1007 
TCGA-D3-A3CB TCGA-D3-A3CE TCGA-D3-A3MR TCGA-D3-A3MU TCGA-D3-A3MV TCGA-D3-A51E 
        5052         1832         3151          819          653         4923 
TCGA-D3-A51H TCGA-D3-A51N TCGA-D3-A51R TCGA-D3-A5GN TCGA-D9-A1JX TCGA-DA-A1I0 
        1221          305         1572         4140          194          620 
TCGA-DA-A1I8 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EB-A44Q TCGA-EB-A44R TCGA-EE-A17X 
        1640         6553          477           28          309          907 
TCGA-EE-A182 TCGA-EE-A20B TCGA-EE-A20C TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29T 
         447         3335         4600         1716         1136        10523 
TCGA-EE-A29X TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GK 
         545         1424          743         1787         1446         1664 
TCGA-EE-A2GM TCGA-EE-A2GO TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2ML 
        2296         3101         2042         3931          876         6175 
TCGA-EE-A2MM TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AG 
        5106         3150         4150         3733          786          714 
TCGA-EE-A3J8 TCGA-ER-A199 TCGA-ER-A19E TCGA-ER-A19G TCGA-ER-A19L TCGA-ER-A19N 
        1044          279          396         8180         3987         1340 
TCGA-ER-A1A1 TCGA-ER-A2NF TCGA-ER-A2NH TCGA-FS-A1Z0 TCGA-FS-A1Z4 TCGA-FS-A1ZA 
        2433          497          975         6163          854          842 
TCGA-FS-A1ZC TCGA-FS-A1ZW TCGA-FS-A4F8 TCGA-FW-A3I3 TCGA-FW-A3TU TCGA-GF-A4EO 
       10870         1505         5318            6         1446          220 
TCGA-GN-A262 TCGA-GN-A265 TCGA-GN-A26D 
        3664         2577         1204 

$subtype2
TCGA-D3-A1Q3 TCGA-D3-A1QA TCGA-D3-A2J6 TCGA-D3-A2JB TCGA-D3-A2JK TCGA-D3-A2JL 
         507         2326         1320         5110          368         4748 
TCGA-D3-A2JP TCGA-D3-A3C6 TCGA-D3-A3CC TCGA-D3-A3CF TCGA-D3-A3ML TCGA-D3-A51J 
        1371         1765         2644          746          421         4012 
TCGA-D3-A51K TCGA-D3-A51T TCGA-D3-A5GL TCGA-D3-A5GS TCGA-D3-A5GU TCGA-D9-A148 
         559          458         3373          226         3808         4609 
TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW 
        1663          111          345           98         1487         1096 
TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F3 
        5926         5370         2005          713         2071          319 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A184 TCGA-EE-A185 TCGA-EE-A20F 
         263         1026          817         2073          150         2399 
TCGA-EE-A20I TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
         412          425         1205          979           78         1349 
TCGA-EE-A29N TCGA-EE-A29V TCGA-EE-A2GC TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GL 
         565          787         1315          686         2717         1673 
TCGA-EE-A2GN TCGA-EE-A2GR TCGA-EE-A2GT TCGA-EE-A2M8 TCGA-EE-A2MD TCGA-EE-A2MH 
        2766          435          595          601         1438          516 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MT 
        2927         4403         1446         7562         1315         1265 
TCGA-EE-A3AA TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A197 
        3781          112          813          420         4221          423 
TCGA-ER-A198 TCGA-ER-A19C TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19P TCGA-ER-A19Q 
        1543         1487          802          195         4930         1548 
TCGA-ER-A2NG TCGA-ER-A3ES TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1Z3 
         951         7514         1010         2448         6598          636 
TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZQ 
         470          295         1441          728         2273         4062 
TCGA-FS-A1ZR TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 
         347         1617          808          823          822         2366 
TCGA-FS-A4F4 TCGA-FS-A4F5 TCGA-FS-A4FB TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A268 
        2028          874          813         3587         1959         1909 

$subtype3
TCGA-D3-A1Q4 TCGA-D3-A1Q6 TCGA-D3-A1Q7 TCGA-D3-A2J7 TCGA-D3-A2J8 TCGA-D3-A2JA 
        3408         2184         3687         3136         1992         3514 
TCGA-D3-A2JN TCGA-D3-A3BZ TCGA-D3-A3C8 TCGA-D3-A3MO TCGA-D3-A51F TCGA-DA-A1HY 
        1709         3516         1038          283         1329         3564 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A3F2 TCGA-EE-A20H TCGA-EE-A29A 
        1093         3265         1861          870         5118         1926 
TCGA-EE-A29C TCGA-EE-A29G TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29W TCGA-EE-A2A1 
        1455         2191          440         1700         5217         2401 
TCGA-EE-A2A5 TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GP TCGA-EE-A2GS 
        1194         9567         4134         5536          422         1691 
TCGA-EE-A2M5 TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MI TCGA-EE-A2MU 
         659         1871         3141         3138         6224         1620 
TCGA-ER-A193 TCGA-ER-A195 TCGA-ER-A19A TCGA-ER-A19D TCGA-ER-A19H TCGA-ER-A19M 
         955         1078         2365          383         4634         1857 
TCGA-ER-A2NC TCGA-ER-A3ET TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z7 TCGA-FS-A1ZB 
        1339         2443         1478         6953          236         1486 
TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZH TCGA-FS-A1ZM TCGA-FS-A1ZS TCGA-FS-A4FD 
        1628         1225          995         3080         4525         2369 
TCGA-FW-A3R5 TCGA-GF-A3OT TCGA-GN-A261 TCGA-GN-A266 TCGA-GN-A26A 
         699          301         2324          307          988 

subtype1 subtype2 subtype3 
       6       78      236 
subtype1 subtype2 subtype3 
   10870     7562     9567 
subtype1 subtype2 subtype3 
    1446     1290     1861 
[1] "6.0 - 10870.0 (1446.0)"  "78.0 - 7562.0 (1290.0)" 
[3] "236.0 - 9567.0 (1861.0)"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [13] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [25] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [31] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [43] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [61] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
 [73] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [85] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[103] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[115] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[121] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[127] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[133] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[139] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[145] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[151] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[157] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[163] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[169] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[175] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[181] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[187] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[193] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[199] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[205] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[217] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[223] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[229] "subtype3" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [13] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [25] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [31] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [43] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [61] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
 [73] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [85] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[103] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[115] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[121] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[127] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[133] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[139] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[145] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[151] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[157] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[163] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[169] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[175] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[181] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[187] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[193] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[199] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[205] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[217] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[223] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[229] "subtype3" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [13] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [25] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [31] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [43] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [61] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
 [73] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [85] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[103] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[115] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[121] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[127] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[133] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[139] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[145] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[151] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[157] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[163] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[169] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[175] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[181] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[187] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[193] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[199] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[205] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[217] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[223] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[229] "subtype3" "subtype1"
D9V3, continuous
          vv
clus       DISTANT METASTASIS PRIMARY TUMOR
  subtype1                  9             1
  subtype2                 13             0
  subtype3                  8             0
          vv
clus       REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE REGIONAL LYMPH NODE
  subtype1                                        15                  53
  subtype2                                        13                  69
  subtype3                                        21                  33
D9V4, multiclass
          vv
clus       I OR II NOS STAGE 0 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  subtype1           5       2       7        5        3        5         2
  subtype2           2       1       5        4       10        8         4
  subtype3           2       1       8        1        9        2         3
          vv
clus       STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  subtype1         1         3         5          2          8         15
  subtype2         7         4         7          3          9         14
  subtype3         4         1         7          5          4          9
          vv
clus       STAGE IV
  subtype1        3
  subtype2        4
  subtype3        3
D9V5, multiclass
          vv
clus       T0+T1 T2 T3 T4
  subtype1    21 10 10 16
  subtype2    14 20 21 21
  subtype3     6 24 13 10
D9V6, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 35 10  8 14
  subtype2 53 15 11  9
  subtype3 35 13  9  4
D9V7, multiclass
          vv
clus       M0 M1 M1A M1B M1C
  subtype1 64  1   1   1   1
  subtype2 85  1   1   1   2
  subtype3 58  1   0   0   2
D9V8, multiclass
D9V9, binary
          cls
clus        0  1
  subtype1 23 20
  subtype2 41 26
  subtype3 26 13
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   23   20
  subtype2   41   26
  subtype3   26   13
     clus
vv    subtype1 subtype2 subtype3
  NO        23       41       26
  YES       20       26       13
D9V10, binary
          cls
clus        0  1
  subtype1 15 63
  subtype2 10 86
  subtype3  5 57
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   15   63
  subtype2   10   86
  subtype3    5   57
     clus
vv    subtype1 subtype2 subtype3
  NO        15       10        5
  YES       63       86       57
D9V11, continuous
D9V12, binary
          cls
clus        0  1
  subtype1 36 42
  subtype2 37 59
  subtype3 18 44
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   36   42
  subtype2   37   59
  subtype3   18   44
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       36       37       18
  MALE         42       59       44

Clustering(10) Variable = MIRSEQ_MATURE_CHIERARCHICAL
D10V1, survival
          sevent
clus2       0  1
  subtype1 30 31
  subtype2 56 61
  subtype3 18  8
subtype1 subtype2 subtype3 
      61      117       26 
subtype1 subtype2 subtype3 
      31       61        8 
$subtype1
TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1QB TCGA-D3-A2J8 TCGA-D3-A2J9 
      111.09        32.55        70.16        68.09         8.38        21.14 
TCGA-D3-A2JA TCGA-D3-A2JC TCGA-D3-A2JD TCGA-D3-A2JN TCGA-D3-A3BZ TCGA-D3-A3C7 
       88.50        69.90        11.41        56.19        99.55        33.11 
TCGA-D3-A3C8 TCGA-D3-A3MO TCGA-D3-A3MR TCGA-D3-A51F TCGA-D3-A51H TCGA-DA-A1HY 
       34.13         9.30       103.59        42.71        15.09        51.12 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A3F2 TCGA-DA-A3F5 TCGA-EE-A20C TCGA-EE-A20H 
       36.69        25.15        19.36        17.56         4.34         9.24 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29T TCGA-EE-A29W TCGA-EE-A2A1 TCGA-EE-A2GE 
        7.96        37.97         6.48         8.68        25.28        34.92 
TCGA-EE-A2GK TCGA-EE-A2GM TCGA-EE-A2GO TCGA-EE-A2M5 TCGA-ER-A193 TCGA-ER-A195 
       16.01        28.31        30.84         8.84        31.40        18.64 
TCGA-ER-A199 TCGA-ER-A19A TCGA-ER-A19D TCGA-ER-A19E TCGA-ER-A19H TCGA-ER-A19L 
        5.72        76.41         3.52        11.90        34.88        12.99 
TCGA-ER-A19N TCGA-ER-A2NC TCGA-ER-A2NH TCGA-FS-A1YY TCGA-FS-A1Z4 TCGA-FS-A1Z7 
       42.84        12.00        11.74        11.05        15.52         7.30 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZH TCGA-FS-A1ZM 
        7.27         3.39         8.22        19.53        30.84        47.38 
TCGA-FS-A1ZS TCGA-FS-A4F8 TCGA-FW-A3R5 TCGA-GF-A3OT TCGA-GN-A261 TCGA-GN-A266 
       49.15        14.20         1.02         9.90        15.35        10.09 
TCGA-GN-A26A 
       12.16 

$subtype2
TCGA-D3-A1Q1 TCGA-D3-A1Q3 TCGA-D3-A1Q7 TCGA-D3-A1QA TCGA-D3-A2J6 TCGA-D3-A2J7 
       16.47         8.52        98.76        31.40        10.26        85.32 
TCGA-D3-A2JB TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A2JL TCGA-D3-A2JP TCGA-D3-A3C6 
       68.25        30.87         6.35        77.00        45.07        15.25 
TCGA-D3-A3CB TCGA-D3-A3CC TCGA-D3-A3CF TCGA-D3-A3ML TCGA-D3-A51E TCGA-D3-A51J 
       82.03        61.38        24.00         6.28        80.22        41.13 
TCGA-D3-A51K TCGA-D3-A51N TCGA-D3-A51T TCGA-D3-A5GL TCGA-D3-A5GS TCGA-D3-A5GU 
       17.72         8.88        13.94        95.38         6.97        23.11 
TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I1 TCGA-DA-A1I2 
        4.01         2.86        48.79        35.80        39.19        13.68 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F3 
        9.99        44.52         4.93        22.36         6.64         7.00 
TCGA-DA-A3F8 TCGA-EB-A44Q TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 
       14.83         0.20        11.57         6.31         1.12        12.20 
TCGA-EE-A184 TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A20I TCGA-EE-A29D TCGA-EE-A29E 
        5.13         4.27         5.13         1.18        11.15        38.63 
TCGA-EE-A29G TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29R 
        8.55         4.41         1.08        27.12         9.47         8.84 
TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GC 
        9.99         2.43         8.09         9.67         8.94        10.13 
TCGA-EE-A2GD TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GL TCGA-EE-A2GN 
       17.98        21.17         3.91        19.43        10.88        33.83 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2MK 
        1.15        13.02         9.67         7.96        63.42       111.78 
TCGA-EE-A3AA TCGA-EE-A3AC TCGA-EE-A3AF TCGA-ER-A197 TCGA-ER-A198 TCGA-ER-A19C 
      124.31        25.84        13.81        12.95        38.37         3.81 
TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19M TCGA-ER-A19P TCGA-ER-A19Q TCGA-ER-A1A1 
       11.11         4.18        28.64        34.68         9.57        78.44 
TCGA-ER-A2NF TCGA-ER-A2NG TCGA-ER-A3ES TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN 
       13.05        12.62         9.04         6.58         1.71         5.95 
TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1ZF TCGA-FS-A1ZG 
       64.47         3.45        23.80        14.24        11.08         7.17 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZT 
       12.92        12.89        52.11         8.68         8.81        40.64 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F4 
        8.68        27.39         0.82         5.23        53.82         7.36 
TCGA-FS-A4F5 TCGA-FS-A4FB TCGA-FS-A4FD TCGA-FW-A3TU TCGA-GN-A262 TCGA-GN-A264 
       28.73         5.98         2.27         0.13        24.85        31.33 
TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26D 
       16.21        15.39        14.70 

$subtype3
TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2JH TCGA-D3-A2JO TCGA-D3-A3CE TCGA-D3-A3MU 
       28.08        22.55        25.38        49.25        13.32        13.55 
TCGA-D3-A3MV TCGA-D3-A51R TCGA-D3-A5GN TCGA-DA-A1I0 TCGA-EB-A44R TCGA-EE-A182 
        5.39        20.48        52.04        10.03         0.20         1.35 
TCGA-EE-A20B TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2GB 
       36.07        12.03         8.12        11.31        23.90        39.39 
TCGA-EE-A2GU TCGA-EE-A3AG TCGA-EE-A3J8 TCGA-ER-A19G TCGA-FS-A1ZC TCGA-FW-A3I3 
        8.68        15.95        16.14       114.15        20.38         0.20 
TCGA-GF-A4EO TCGA-GN-A265 
        7.23        84.72 

subtype1 subtype2 subtype3 
    1.02     0.13     0.20 
subtype1 subtype2 subtype3 
  111.09   124.31   114.15 
subtype1 subtype2 subtype3 
  18.640   12.620   16.045 
[1] "1.0 - 111.1 (18.6)" "0.1 - 124.3 (12.6)" "0.2 - 114.2 (16.0)"
  [1] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [13] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [19] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [25] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
 [37] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [43] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [79] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[103] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[109] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[115] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[133] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[139] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[151] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[169] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[175] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[193] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[199] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
  [1] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [13] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [19] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [25] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
 [37] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [43] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [79] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[103] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[109] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[115] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[133] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[139] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[151] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[169] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[175] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[193] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[199] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
  [1] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [13] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [19] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [25] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
 [37] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [43] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [79] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[103] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[109] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[115] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[133] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[139] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[151] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[169] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[175] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[193] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[199] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
D10V2, survival
          sevent
clus2       0  1
  subtype1 33 34
  subtype2 64 69
  subtype3 20 10
subtype1 subtype2 subtype3 
      67      133       30 
subtype1 subtype2 subtype3 
      34       69       10 
$subtype1
TCGA-D3-A1Q4 TCGA-D3-A1Q5 TCGA-D3-A1Q6 TCGA-D3-A1QB TCGA-D3-A2J8 TCGA-D3-A2J9 
        3408         3423         2184         2512         1992          723 
TCGA-D3-A2JA TCGA-D3-A2JC TCGA-D3-A2JD TCGA-D3-A2JN TCGA-D3-A3BZ TCGA-D3-A3C7 
        3514         2126          361         1709         3516         1007 
TCGA-D3-A3C8 TCGA-D3-A3MO TCGA-D3-A3MR TCGA-D3-A51F TCGA-D3-A51H TCGA-DA-A1HY 
        1038          283         3151         1329         1221         3564 
TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A3F2 TCGA-DA-A3F5 TCGA-EE-A20C TCGA-EE-A20H 
        1861         1640          870         6553         4600         5118 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29T TCGA-EE-A29W TCGA-EE-A2A1 TCGA-EE-A2GE 
        1926         1455        10523         5217         2401         4134 
TCGA-EE-A2GK TCGA-EE-A2GM TCGA-EE-A2GO TCGA-EE-A2M5 TCGA-EE-A2MC TCGA-EE-A2MG 
        1664         2296         3101          659         1871         3138 
TCGA-EE-A2MI TCGA-EE-A2MR TCGA-EE-A2MU TCGA-EE-A3AB TCGA-ER-A193 TCGA-ER-A195 
        6224         3150         1620         3733          955         1078 
TCGA-ER-A199 TCGA-ER-A19A TCGA-ER-A19D TCGA-ER-A19E TCGA-ER-A19H TCGA-ER-A19L 
         279         2365          383          396         4634         3987 
TCGA-ER-A19N TCGA-ER-A2NC TCGA-ER-A2NH TCGA-FS-A1YY TCGA-FS-A1Z4 TCGA-FS-A1Z7 
        1340         1339          975         6953          854          236 
TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZH TCGA-FS-A1ZM 
         842         1486         1628         1225          995         3080 
TCGA-FS-A1ZS TCGA-FS-A4F8 TCGA-FW-A3R5 TCGA-GF-A3OT TCGA-GN-A261 TCGA-GN-A266 
        4525         5318          699          301         2324          307 
TCGA-GN-A26A 
         988 

$subtype2
TCGA-D3-A1Q1 TCGA-D3-A1Q3 TCGA-D3-A1Q7 TCGA-D3-A1QA TCGA-D3-A2J6 TCGA-D3-A2J7 
         504          507         3687         2326         1320         3136 
TCGA-D3-A2JB TCGA-D3-A2JF TCGA-D3-A2JK TCGA-D3-A2JL TCGA-D3-A2JP TCGA-D3-A3C6 
        5110         1483          368         4748         1371         1765 
TCGA-D3-A3CB TCGA-D3-A3CC TCGA-D3-A3CF TCGA-D3-A3ML TCGA-D3-A51E TCGA-D3-A51J 
        5052         2644          746          421         4923         4012 
TCGA-D3-A51K TCGA-D3-A51N TCGA-D3-A51T TCGA-D3-A5GL TCGA-D3-A5GS TCGA-D3-A5GU 
         559          305          458         3373          226         3808 
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A3Z1 TCGA-D9-A3Z3 TCGA-DA-A1HV 
        4609         1663          111          345           98         1487 
TCGA-DA-A1HW TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1IA 
        1096         5926         5370         1093         3265         2005 
TCGA-DA-A1IB TCGA-DA-A1IC TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EB-A44Q TCGA-EE-A17X 
         713         2071          319          477           28          907 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A184 TCGA-EE-A185 TCGA-EE-A20F 
         263         1026          817         2073          150         2399 
TCGA-EE-A20I TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29G TCGA-EE-A29H TCGA-EE-A29L 
         412          425         1205         2191          979           78 
TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X 
        1349          565          440         1700          787          545 
TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GH TCGA-EE-A2GI 
        1194         1787         1315         9567         5536          686 
TCGA-EE-A2GJ TCGA-EE-A2GL TCGA-EE-A2GN TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS 
        2717         1673         2766          422          435         1691 
TCGA-EE-A2GT TCGA-EE-A2M8 TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MH TCGA-EE-A2MJ 
         595          601         1438         3141          516         2927 
TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MS 
        4403         5106         1446         7562         1315         4150 
TCGA-EE-A2MT TCGA-EE-A3AA TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF 
        1265         3781          786          112          813          420 
TCGA-EE-A3AH TCGA-ER-A197 TCGA-ER-A198 TCGA-ER-A19C TCGA-ER-A19F TCGA-ER-A19J 
        4221          423         1543         1487          802          195 
TCGA-ER-A19M TCGA-ER-A19P TCGA-ER-A19Q TCGA-ER-A1A1 TCGA-ER-A2NF TCGA-ER-A2NG 
        1857         4930         1548         2433          497          951 
TCGA-ER-A3ES TCGA-ER-A3ET TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX 
        7514         2443         1010         2448         6598         1478 
TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZK 
        6163          636          470          295         1441          728 
TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW 
        2273         4062          347         1617          808         1505 
TCGA-FS-A1ZY TCGA-FS-A1ZZ TCGA-FS-A4F0 TCGA-FS-A4F4 TCGA-FS-A4F5 TCGA-FS-A4FB 
         823          822         2366         2028          874          813 
TCGA-FS-A4FD TCGA-FW-A3TU TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A268 
        2369         1446         3664         3587         1959         1909 
TCGA-GN-A26D 
        1204 

$subtype3
TCGA-D3-A1Q8 TCGA-D3-A1Q9 TCGA-D3-A2JH TCGA-D3-A2JO TCGA-D3-A3CE TCGA-D3-A3MU 
         854          961          951         1547         1832          819 
TCGA-D3-A3MV TCGA-D3-A51R TCGA-D3-A5GN TCGA-D9-A1JX TCGA-DA-A1I0 TCGA-EB-A44R 
         653         1572         4140          194          620          309 
TCGA-EE-A182 TCGA-EE-A20B TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A2A0 TCGA-EE-A2A2 
         447         3335         1716         1136         1424          743 
TCGA-EE-A2GB TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2ML TCGA-EE-A3AG 
        1446         2042         3931          876         6175          714 
TCGA-EE-A3J8 TCGA-ER-A19G TCGA-FS-A1ZC TCGA-FW-A3I3 TCGA-GF-A4EO TCGA-GN-A265 
        1044         8180        10870            6          220         2577 

subtype1 subtype2 subtype3 
     236       28        6 
subtype1 subtype2 subtype3 
   10523     9567    10870 
subtype1 subtype2 subtype3 
    1861     1438     1090 
[1] "236.0 - 10523.0 (1861.0)" "28.0 - 9567.0 (1438.0)"  
[3] "6.0 - 10870.0 (1090.0)"  
  [1] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [13] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [19] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [25] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
 [37] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [43] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [67] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [79] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [85] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[109] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[115] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[121] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[127] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[133] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[139] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[145] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[157] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[163] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[169] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[175] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[187] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[193] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[199] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[205] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[217] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[223] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[229] "subtype1" "subtype2"
  [1] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [13] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [19] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [25] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
 [37] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [43] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [67] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [79] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [85] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[109] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[115] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[121] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[127] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[133] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[139] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[145] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[157] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[163] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[169] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[175] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[187] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[193] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[199] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[205] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[217] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[223] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[229] "subtype1" "subtype2"
  [1] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [13] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [19] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [25] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
 [37] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [43] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [67] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [79] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [85] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[109] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[115] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[121] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[127] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[133] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[139] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[145] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[157] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[163] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[169] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[175] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[187] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[193] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[199] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[205] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[217] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[223] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[229] "subtype1" "subtype2"
D10V3, continuous
          vv
clus       DISTANT METASTASIS PRIMARY TUMOR
  subtype1                  9             0
  subtype2                 18             1
  subtype3                  3             0
          vv
clus       REGIONAL CUTANEOUS OR SUBCUTANEOUS TISSUE REGIONAL LYMPH NODE
  subtype1                                        19                  42
  subtype2                                        22                  94
  subtype3                                         8                  19
D10V4, multiclass
          vv
clus       I OR II NOS STAGE 0 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA
  subtype1           3       3       9        1        6        3         2
  subtype2           5       1       9        8       15        9         5
  subtype3           1       0       2        1        1        3         2
          vv
clus       STAGE IIB STAGE IIC STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  subtype1         3         2        10          3          3         13
  subtype2         8         5         8          5         14         21
  subtype3         1         1         1          2          4          4
          vv
clus       STAGE IV
  subtype1        2
  subtype2        6
  subtype3        2
D10V5, multiclass
          vv
clus       T0+T1 T2 T3 T4
  subtype1    12 18  9 14
  subtype2    23 34 28 26
  subtype3     6  2  7  7
D10V6, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 35 12  9  9
  subtype2 74 21 15 15
  subtype3 14  5  4  3
D10V7, multiclass
          vv
clus        M0  M1 M1A M1B M1C
  subtype1  64   1   0   0   1
  subtype2 119   1   1   1   4
  subtype3  24   1   1   1   0
D10V8, multiclass
D10V9, binary
          cls
clus        0  1
  subtype1 22 15
  subtype2 58 35
  subtype3 10  9
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   22   15
  subtype2   58   35
  subtype3   10    9
     clus
vv    subtype1 subtype2 subtype3
  NO        22       58       10
  YES       15       35        9
D10V10, binary
          cls
clus         0   1
  subtype1  11  59
  subtype2  13 123
  subtype3   6  24
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   11   59
  subtype2   13  123
  subtype3    6   24
     clus
vv    subtype1 subtype2 subtype3
  NO        11       13        6
  YES       59      123       24
D10V11, continuous
D10V12, binary
          cls
clus        0  1
  subtype1 21 49
  subtype2 56 80
  subtype3 14 16
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   21   49
  subtype2   56   80
  subtype3   14   16
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       21       56       14
  MALE         49       80       16
> q(save="no")
