		Molecular subtypes	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	0 (0%)	237	0.0099497	1	0.19109	1	0.82706	1	0.91847	1	0.064993	1	0.079565	1	0.43564	1	0.10787	1	0.19436	1	0.19656	1
1q gain	0 (0%)	178	3.7132e-12	2.89e-09	0.0026726	1	0.15352	1	0.60186	1	0.045222	1	0.28995	1	0.22105	1	0.0053327	1	0.29867	1	0.03215	1
2p gain	0 (0%)	236	0.025218	1	0.1376	1	0.73541	1	0.35298	1	0.0024281	1	0.00069999	0.512	0.06254	1	0.021844	1	0.10293	1	0.002702	1
2q gain	0 (0%)	238	0.024381	1	0.18757	1	0.98587	1	0.12653	1	0.00051332	0.377	6.3748e-05	0.0477	0.020107	1	0.0057064	1	0.03217	1	0.00070812	0.518
3p gain	0 (0%)	244	0.017769	1	0.076615	1	0.29454	1	0.043965	1	0.08912	1	0.26733	1	0.5329	1	0.60956	1	0.66412	1	0.72551	1
3q gain	0 (0%)	237	0.057026	1	0.17938	1	0.32137	1	0.071411	1	0.091792	1	0.43423	1	0.67171	1	0.59074	1	0.59462	1	0.41101	1
4p gain	0 (0%)	240	0.023459	1	0.066203	1	0.12326	1	1	1	0.62169	1	0.93017	1	0.33339	1	0.49066	1	0.86847	1	0.50061	1
4q gain	0 (0%)	245	0.00075893	0.554	0.013007	1	0.58317	1	0.33254	1	0.52141	1	0.47394	1	0.2035	1	0.28864	1	0.74913	1	0.17524	1
5p gain	0 (0%)	234	2.0979e-05	0.0158	0.069849	1	0.87869	1	0.64478	1	0.41091	1	0.38549	1	0.06157	1	0.46625	1	0.06403	1	0.36467	1
5q gain	0 (0%)	248	0.0022515	1	0.098255	1	0.59575	1	0.22793	1	0.22315	1	0.053306	1	0.047431	1	0.070187	1	0.18807	1	0.17148	1
6p gain	0 (0%)	182	0.00018965	0.141	1.174e-05	0.00886	0.7381	1	0.068805	1	0.038467	1	0.086301	1	0.031447	1	0.001746	1	0.37292	1	0.001045	0.76
6q gain	0 (0%)	246	0.91896	1	0.07193	1	0.72276	1	0.84465	1	0.71405	1	0.41896	1	0.76017	1	0.83794	1	0.48919	1	0.94309	1
7p gain	0 (0%)	156	1.8548e-08	1.43e-05	0.11033	1	0.89402	1	0.69212	1	8.7755e-05	0.0655	0.14388	1	0.15335	1	0.36262	1	0.5784	1	0.21597	1
7q gain	0 (0%)	155	2.6146e-06	0.00199	0.1825	1	0.98102	1	0.50337	1	7.1213e-05	0.0532	0.054798	1	0.08759	1	0.07181	1	0.39789	1	0.1088	1
8p gain	0 (0%)	209	2.9885e-08	2.3e-05	0.0028809	1	0.71021	1	0.046838	1	0.00024643	0.182	0.030419	1	0.85666	1	0.59084	1	0.67254	1	0.8443	1
8q gain	0 (0%)	176	1.744e-09	1.34e-06	5.2655e-06	0.00399	0.79783	1	0.096289	1	3.4898e-05	0.0262	0.031969	1	0.73404	1	0.85795	1	0.34936	1	0.91199	1
9p gain	0 (0%)	257	0.72383	1	0.39434	1	0.17178	1	0.17483	1	0.47163	1	0.69965	1	0.71227	1	0.56374	1	0.71441	1	0.65456	1
9q gain	0 (0%)	255	0.87164	1	0.56539	1	0.090241	1	0.18992	1	0.70676	1	1	1	0.92457	1	0.43204	1	0.92695	1	0.5564	1
11p gain	0 (0%)	250	3.4189e-05	0.0257	0.90197	1	0.21779	1	0.10638	1	0.0050542	1	0.76046	1	0.64191	1	0.095933	1	0.32836	1	0.14228	1
11q gain	0 (0%)	252	6.9452e-08	5.31e-05	0.41519	1	0.072784	1	0.15338	1	0.0068876	1	0.44669	1	0.88416	1	0.1216	1	0.53977	1	0.45097	1
12p gain	0 (0%)	240	2.4624e-05	0.0185	0.071034	1	0.51261	1	0.50628	1	0.0027004	1	0.14923	1	0.15528	1	0.18108	1	0.055589	1	0.04661	1
12q gain	0 (0%)	253	0.017612	1	0.41541	1	0.9214	1	0.37933	1	0.031508	1	0.36857	1	0.78271	1	0.4724	1	0.30184	1	0.45097	1
13q gain	0 (0%)	222	2.0529e-07	0.000157	1.3631e-05	0.0103	0.028092	1	0.86041	1	0.025188	1	0.17856	1	0.40179	1	0.3137	1	0.86974	1	0.39189	1
14q gain	0 (0%)	250	0.047806	1	0.042999	1	0.17067	1	0.13792	1	0.70076	1	0.76046	1	0.44989	1	0.93586	1	0.95108	1	0.76672	1
15q gain	0 (0%)	232	0.016232	1	0.41418	1	0.66929	1	0.95341	1	0.23816	1	0.38098	1	0.96998	1	0.15205	1	0.86246	1	0.31125	1
16p gain	0 (0%)	247	0.00012311	0.0917	0.0026123	1	0.75257	1	0.77439	1	0.006385	1	0.062218	1	0.57582	1	0.42675	1	0.33439	1	0.84289	1
16q gain	0 (0%)	250	0.0014839	1	0.028061	1	0.099675	1	0.31775	1	0.0050542	1	0.054752	1	0.80953	1	0.3026	1	0.25059	1	0.47296	1
17p gain	0 (0%)	249	0.018959	1	0.23201	1	0.41218	1	0.12243	1	0.58684	1	0.73067	1	0.24742	1	0.6267	1	0.1511	1	0.3803	1
17q gain	0 (0%)	237	0.087425	1	0.076743	1	0.041542	1	0.031955	1	0.68988	1	0.65204	1	0.073843	1	0.25359	1	0.055144	1	0.21759	1
18p gain	0 (0%)	238	0.07531	1	0.23905	1	0.46535	1	0.28168	1	0.03316	1	0.25738	1	0.19772	1	0.25365	1	0.31721	1	0.16976	1
18q gain	0 (0%)	248	0.011584	1	0.093825	1	0.38497	1	1	1	0.1344	1	0.45037	1	0.81936	1	0.82039	1	0.61148	1	0.73235	1
19p gain	0 (0%)	250	0.025259	1	0.026386	1	0.054881	1	0.62461	1	0.0029985	1	0.0021842	1	0.14654	1	0.65468	1	0.66376	1	0.58113	1
19q gain	0 (0%)	246	0.11839	1	0.066305	1	0.29267	1	0.94563	1	0.00046609	0.343	0.0097992	1	0.51577	1	0.63269	1	0.95882	1	0.5474	1
20p gain	0 (0%)	188	3.6806e-08	2.82e-05	0.00027656	0.204	0.48064	1	0.76666	1	1.7234e-06	0.00131	0.00063026	0.462	0.079516	1	0.074164	1	0.042969	1	0.046565	1
20q gain	0 (0%)	168	4.5194e-10	3.5e-07	0.00028368	0.209	0.37117	1	0.56578	1	0.00015149	0.113	0.022393	1	0.22381	1	0.21058	1	0.18981	1	0.03539	1
21q gain	0 (0%)	237	0.014922	1	0.00027095	0.2	0.66787	1	1	1	0.091792	1	0.0049365	1	0.69469	1	0.74084	1	0.34122	1	0.8457	1
22q gain	0 (0%)	202	4.5718e-08	3.5e-05	0.066471	1	0.63483	1	0.97413	1	0.2396	1	0.34192	1	0.64953	1	0.56894	1	0.5202	1	0.18938	1
Xq gain	0 (0%)	263	0.19121	1	0.83663	1	0.75699	1	1	1	0.039831	1	0.087448	1	0.55218	1	0.41955	1	0.37643	1	1	1
1p loss	0 (0%)	251	0.19097	1	0.011633	1	0.45799	1	0.21085	1	0.016805	1	0.52742	1	0.42392	1	0.86605	1	0.94599	1	1	1
1q loss	0 (0%)	261	0.38452	1	0.29405	1	0.34089	1	1	1	0.33562	1	1	1	0.76505	1	1	1	1	1	1	1
2p loss	0 (0%)	247	0.096724	1	0.064322	1	0.23266	1	0.036399	1	0.51206	1	0.46669	1	0.0014531	1	0.0077417	1	0.0033173	1	0.010844	1
2q loss	0 (0%)	247	0.2982	1	0.014403	1	0.13817	1	0.04	1	0.32795	1	0.48735	1	0.0014714	1	0.034669	1	0.0066331	1	0.036851	1
3p loss	0 (0%)	242	0.23034	1	0.032806	1	0.030184	1	0.6427	1	0.016214	1	0.069537	1	0.89295	1	0.45297	1	0.49507	1	0.71882	1
3q loss	0 (0%)	245	0.4249	1	0.020799	1	0.037441	1	0.6427	1	0.19769	1	0.27932	1	0.60434	1	0.27095	1	0.41489	1	0.14716	1
4p loss	0 (0%)	236	0.83565	1	0.1376	1	0.29831	1	0.18276	1	0.0099274	1	0.0334	1	0.64691	1	0.54052	1	0.047713	1	0.45195	1
4q loss	0 (0%)	234	0.23554	1	0.023008	1	0.33759	1	0.1568	1	0.014878	1	0.010631	1	0.17782	1	0.11412	1	0.0021518	1	0.025873	1
5p loss	0 (0%)	233	0.23295	1	0.42729	1	0.93772	1	0.56112	1	0.36509	1	0.24166	1	0.03533	1	0.13103	1	0.067711	1	0.11293	1
5q loss	0 (0%)	217	0.20927	1	0.12971	1	0.50579	1	0.82577	1	0.26257	1	0.31812	1	0.18439	1	0.73721	1	0.29765	1	0.82994	1
6p loss	0 (0%)	241	0.006256	1	0.34075	1	0.73261	1	0.79842	1	0.26721	1	0.36103	1	0.48126	1	0.515	1	0.54446	1	0.60051	1
6q loss	0 (0%)	174	2.9045e-08	2.23e-05	0.0032752	1	0.74061	1	0.25842	1	0.0010203	0.744	0.015527	1	0.61106	1	0.6127	1	0.77486	1	0.53806	1
7p loss	0 (0%)	260	0.49756	1	0.035533	1	0.076926	1	0.38691	1	0.79831	1	1	1	0.54761	1	0.7396	1	0.80133	1	0.64183	1
7q loss	0 (0%)	261	0.58615	1	0.092588	1	0.22767	1	1	1	1	1	0.87227	1	1	1	0.70707	1	0.76789	1	0.71949	1
8p loss	0 (0%)	237	0.43185	1	0.19109	1	0.094831	1	0.061801	1	0.064993	1	0.47941	1	0.32077	1	0.50038	1	0.50586	1	0.30988	1
8q loss	0 (0%)	262	1	1	0.071983	1	0.76069	1	0.12136	1	0.37931	1	0.038134	1	0.84794	1	1	1	0.38256	1	1	1
9p loss	0 (0%)	122	3.4264e-07	0.000261	5.6732e-05	0.0425	0.27246	1	0.90606	1	0.00022538	0.167	0.0024975	1	0.46097	1	0.35117	1	0.41655	1	0.23086	1
9q loss	0 (0%)	157	0.011773	1	0.0048421	1	0.32597	1	0.040003	1	0.37868	1	0.50726	1	0.14708	1	0.28497	1	0.31481	1	0.19887	1
10p loss	0 (0%)	157	1.356e-11	1.05e-08	3.2742e-06	0.00248	0.66413	1	0.22627	1	3.2077e-06	0.00243	0.0036755	1	0.49098	1	0.43895	1	0.15249	1	0.73458	1
10q loss	0 (0%)	142	8.2506e-10	6.38e-07	1.1475e-05	0.00867	0.79672	1	0.089297	1	3.3003e-07	0.000252	0.0010703	0.777	0.75621	1	0.6044	1	0.22279	1	0.65815	1
11p loss	0 (0%)	204	1.6651e-09	1.29e-06	0.0010905	0.791	0.30635	1	0.15865	1	0.00811	1	0.052871	1	0.025634	1	0.31755	1	0.093461	1	0.17229	1
11q loss	0 (0%)	193	7.4297e-11	5.77e-08	0.0071267	1	0.81839	1	0.55982	1	0.0040516	1	0.20667	1	0.15812	1	0.28689	1	0.43335	1	0.20296	1
12p loss	0 (0%)	249	0.060082	1	0.004009	1	0.95206	1	0.23996	1	0.087705	1	0.48174	1	1	1	0.86605	1	0.89828	1	1	1
12q loss	0 (0%)	242	0.010967	1	0.00019206	0.143	0.91934	1	0.75633	1	0.16945	1	0.16833	1	1	1	0.65363	1	0.88912	1	0.63145	1
13q loss	0 (0%)	231	0.034236	1	0.25158	1	0.40454	1	0.92291	1	0.47349	1	0.2747	1	0.27675	1	0.25245	1	0.30304	1	0.44045	1
14q loss	0 (0%)	207	8.2921e-11	6.43e-08	0.11909	1	0.47317	1	0.77298	1	0.0026834	1	0.42065	1	0.98089	1	0.6823	1	0.68223	1	0.92887	1
15q loss	0 (0%)	249	0.092976	1	0.13242	1	0.45626	1	0.084214	1	0.58684	1	0.7723	1	0.53013	1	0.65468	1	0.4557	1	0.58113	1
16p loss	0 (0%)	244	0.0081094	1	0.019126	1	0.0012945	0.937	0.013427	1	0.13391	1	0.19028	1	0.069411	1	0.17607	1	0.084229	1	0.20685	1
16q loss	0 (0%)	219	0.0018626	1	0.041339	1	0.058264	1	0.87806	1	0.0010311	0.751	0.075141	1	0.058538	1	0.11493	1	0.096881	1	0.020001	1
17p loss	0 (0%)	214	0.60165	1	0.12361	1	0.36901	1	0.45112	1	0.064811	1	0.7308	1	0.72759	1	0.62443	1	0.021558	1	0.48361	1
17q loss	0 (0%)	245	0.40781	1	0.53892	1	0.023748	1	0.33299	1	0.091923	1	0.70388	1	0.66335	1	0.70081	1	0.60887	1	0.84289	1
18p loss	0 (0%)	216	0.0027374	1	0.020012	1	0.41313	1	0.96759	1	0.00026598	0.197	0.094744	1	0.72759	1	0.73721	1	0.492	1	0.66991	1
18q loss	0 (0%)	220	0.01183	1	0.059868	1	0.26719	1	0.20111	1	0.092055	1	0.85199	1	0.93428	1	0.58748	1	0.81939	1	0.91845	1
19p loss	0 (0%)	248	0.17274	1	0.68727	1	0.70235	1	0.40505	1	0.12765	1	0.11024	1	0.37955	1	0.93872	1	0.42435	1	0.61717	1
19q loss	0 (0%)	248	0.025867	1	0.5436	1	0.98168	1	0.18047	1	0.33825	1	0.25355	1	0.56048	1	0.93872	1	0.87256	1	0.61717	1
20p loss	0 (0%)	253	0.017612	1	0.57668	1	0.54948	1	0.59999	1	0.65193	1	0.59054	1	0.088198	1	0.5411	1	0.36357	1	0.39206	1
20q loss	0 (0%)	264	0.053696	1	0.18757	1	NA	NA	NA	NA	0.4923	1	0.20689	1	0.79604	1	1	1	0.62033	1	1	1
21q loss	0 (0%)	235	0.029107	1	0.24502	1	0.58189	1	0.047316	1	0.31467	1	0.62275	1	0.91294	1	0.50528	1	0.10012	1	0.54322	1
22q loss	0 (0%)	246	0.16132	1	0.10911	1	0.92548	1	1	1	0.68391	1	0.60568	1	0.076673	1	0.43122	1	0.95345	1	0.45043	1
Xq loss	0 (0%)	257	0.43391	1	0.0033829	1	0.62492	1	0.11548	1	0.43529	1	0.11548	1	0.16637	1	0.50291	1	0.11234	1	0.58656	1
