		Molecular subtypes	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1p12)	0 (0%)	186	0.0017872	0.91	0.35743	1	0.4885	1	1	1	0.11772	1	0.49075	1	0.49018	1	0.5604	1	0.45203	1	0.96123	1
Amp Peak  2(1q21.3)	0 (0%)	132	3.1448e-10	1.72e-07	0.032029	1	0.28512	1	1	1	0.026996	1	0.47775	1	0.2683	1	0.017712	1	0.48987	1	0.21056	1
Amp Peak  3(1q44)	0 (0%)	125	2.2221e-10	1.22e-07	0.0067754	1	0.1093	1	0.48904	1	0.098454	1	0.54475	1	0.13495	1	0.0020921	1	0.40096	1	0.041262	1
Amp Peak  4(3p13)	0 (0%)	198	0.44438	1	0.6964	1	0.097775	1	0.010381	1	0.90701	1	0.68093	1	0.82659	1	0.14832	1	1	1	0.17722	1
Amp Peak  5(4q12)	0 (0%)	217	0.026346	1	0.38566	1	0.089378	1	0.064132	1	0.4688	1	0.2987	1	0.020982	1	0.012968	1	0.018456	1	0.0061129	1
Amp Peak  6(5p15.33)	0 (0%)	182	1.2721e-09	6.92e-07	0.28988	1	0.84554	1	0.42113	1	0.30129	1	0.14858	1	0.0005839	0.301	0.033323	1	9.5868e-05	0.0502	0.0072037	1
Amp Peak  7(5q35.3)	0 (0%)	225	2.7975e-05	0.0148	0.00030249	0.157	0.10026	1	0.026304	1	0.088059	1	0.018616	1	0.024513	1	0.038295	1	0.1339	1	0.10091	1
Amp Peak  8(6p25.1)	0 (0%)	116	3.3111e-05	0.0175	0.00037938	0.196	0.22362	1	0.0099187	1	0.052726	1	0.0058309	1	0.0012207	0.624	1.0306e-05	0.00553	0.012337	1	2.5016e-05	0.0133
Amp Peak  9(6q12)	0 (0%)	207	0.6178	1	0.52132	1	0.83907	1	0.0049451	1	0.093852	1	0.075666	1	0.21118	1	0.27764	1	0.81668	1	0.52718	1
Amp Peak 10(7p22.3)	0 (0%)	124	1.1484e-05	0.00616	0.49211	1	0.52844	1	0.87011	1	0.022899	1	0.40448	1	0.87552	1	0.81196	1	0.69472	1	0.36526	1
Amp Peak 11(7q34)	0 (0%)	109	0.0003436	0.178	0.26699	1	0.3312	1	0.52608	1	0.096643	1	0.12799	1	0.075603	1	0.18859	1	0.17076	1	0.28869	1
Amp Peak 12(8q11.21)	0 (0%)	150	1.5368e-05	0.00821	0.003531	1	0.44227	1	0.22591	1	0.025963	1	0.30141	1	0.6759	1	0.96552	1	0.55886	1	0.71266	1
Amp Peak 13(8q24.21)	0 (0%)	132	3.169e-08	1.72e-05	0.0027347	1	0.52452	1	0.53196	1	0.0093343	1	0.54637	1	0.83064	1	0.58493	1	0.80202	1	0.61595	1
Amp Peak 14(9p24.1)	0 (0%)	244	1	1	0.51108	1	0.71983	1	0.78572	1	0.49089	1	0.49098	1	0.21903	1	0.53068	1	0.098932	1	0.46242	1
Amp Peak 15(11q13.3)	0 (0%)	217	7.047e-06	0.0038	0.086774	1	0.87362	1	0.54121	1	0.44045	1	1	1	0.80329	1	0.23664	1	0.49197	1	0.57619	1
Amp Peak 16(11q13.4)	0 (0%)	221	3.5798e-06	0.00193	0.01701	1	0.90271	1	0.65505	1	0.12102	1	0.54462	1	0.46291	1	0.12388	1	0.25544	1	0.83821	1
Amp Peak 17(12q14.1)	0 (0%)	221	0.0012073	0.618	0.5641	1	0.70996	1	0.29602	1	0.12102	1	0.15888	1	0.71207	1	0.39692	1	0.85718	1	0.81942	1
Amp Peak 18(12q15)	0 (0%)	223	0.01516	1	0.6475	1	0.4965	1	0.39145	1	0.55665	1	0.61656	1	0.88984	1	0.42217	1	0.83273	1	0.94318	1
Amp Peak 19(15q26.2)	0 (0%)	178	0.044092	1	0.71186	1	0.93022	1	0.5336	1	0.62937	1	0.34266	1	0.75268	1	0.55665	1	0.8031	1	0.6731	1
Amp Peak 20(17q25.3)	0 (0%)	175	0.003274	1	0.0022928	1	0.016481	1	0.031793	1	0.20006	1	0.36487	1	0.30188	1	0.010853	1	0.01587	1	0.045074	1
Amp Peak 21(19p13.2)	0 (0%)	214	0.055352	1	0.11866	1	0.30079	1	0.70236	1	0.010522	1	0.0039426	1	0.71466	1	0.047492	1	0.11419	1	0.013465	1
Amp Peak 22(20q13.33)	0 (0%)	131	0.00010578	0.0553	0.017152	1	0.73706	1	0.87098	1	0.004752	1	0.21806	1	0.57289	1	0.14068	1	0.12318	1	0.030495	1
Amp Peak 23(22q13.2)	0 (0%)	156	3.4287e-07	0.000185	0.042242	1	0.9037	1	0.90377	1	0.53171	1	0.74815	1	0.35411	1	0.72627	1	0.5784	1	0.32121	1
Del Peak  1(1p36.31)	0 (0%)	203	0.21018	1	0.00069421	0.357	0.67691	1	0.13472	1	0.071687	1	0.020835	1	0.49077	1	0.46833	1	0.86762	1	0.54024	1
Del Peak  2(1p22.1)	0 (0%)	199	0.063276	1	0.00012724	0.0662	0.61486	1	0.08864	1	0.00011718	0.0611	0.12624	1	0.49744	1	0.34304	1	0.18645	1	0.28947	1
Del Peak  3(2q37.3)	0 (0%)	200	0.49009	1	0.025173	1	0.037057	1	0.0070337	1	0.0071334	1	0.024115	1	0.030875	1	0.044674	1	0.11187	1	0.062901	1
Del Peak  4(3p21.2)	0 (0%)	217	0.79952	1	0.902	1	0.72139	1	0.75613	1	0.40553	1	0.3115	1	0.5536	1	0.66956	1	0.46043	1	0.75917	1
Del Peak  5(3q23)	0 (0%)	226	0.27478	1	0.018349	1	0.27645	1	0.40402	1	0.31614	1	0.59889	1	1	1	0.64906	1	0.92831	1	0.59956	1
Del Peak  6(4q34.3)	0 (0%)	197	0.41872	1	0.091018	1	0.94272	1	0.4682	1	0.056776	1	0.0094228	1	0.009046	1	0.0024415	1	0.0021268	1	0.004098	1
Del Peak  7(5p15.31)	0 (0%)	212	0.26778	1	0.29611	1	0.44578	1	0.44873	1	0.25214	1	0.7995	1	0.6006	1	0.26966	1	0.35459	1	0.46522	1
Del Peak  8(5q11.2)	0 (0%)	194	0.00554	1	0.10906	1	0.30638	1	0.41698	1	0.71851	1	0.55475	1	0.95074	1	0.40552	1	0.20477	1	0.47672	1
Del Peak  9(5q31.3)	0 (0%)	168	0.076906	1	7.7552e-05	0.0409	0.60161	1	0.97829	1	0.70575	1	0.48802	1	0.78603	1	0.29484	1	0.21376	1	0.12538	1
Del Peak 10(6q22.31)	0 (0%)	108	1.4008e-14	7.69e-12	0.13591	1	0.86089	1	0.13951	1	0.004116	1	0.34154	1	0.48738	1	0.56199	1	0.93469	1	0.77103	1
Del Peak 11(6q25.3)	0 (0%)	98	4.8151e-13	2.64e-10	0.2366	1	0.53539	1	0.53111	1	0.0044596	1	0.45682	1	0.61478	1	0.89514	1	0.97256	1	0.80677	1
Del Peak 12(6q26)	0 (0%)	101	8.5825e-15	4.72e-12	0.14611	1	0.61037	1	0.54903	1	0.004697	1	0.41709	1	0.34425	1	0.64219	1	0.79041	1	0.93162	1
Del Peak 13(8p23.3)	0 (0%)	202	0.51757	1	0.076153	1	0.19242	1	0.058004	1	0.10123	1	0.74888	1	0.25681	1	0.38574	1	0.23786	1	0.55767	1
Del Peak 14(9p23)	0 (0%)	85	1.1962e-05	0.0064	0.053516	1	0.40931	1	0.78178	1	0.0027003	1	0.065787	1	0.70783	1	0.24725	1	0.29318	1	0.30318	1
Del Peak 15(9p21.3)	0 (0%)	61	1.0914e-09	5.95e-07	0.0022648	1	0.60475	1	0.60029	1	0.00011376	0.0594	0.02361	1	0.89554	1	0.69844	1	0.88158	1	0.85084	1
Del Peak 16(10p15.3)	0 (0%)	122	1.8765e-05	0.01	0.027102	1	0.68542	1	0.59835	1	8.7028e-05	0.0457	0.0015704	0.801	0.54794	1	0.50587	1	0.49243	1	0.46852	1
Del Peak 17(10q23.31)	0 (0%)	103	3.2685e-05	0.0173	0.097597	1	0.91125	1	0.076001	1	8.5259e-05	0.0448	0.0077779	1	0.49621	1	0.53863	1	0.77154	1	0.23872	1
Del Peak 18(10q26.3)	0 (0%)	100	0.0011406	0.585	0.27353	1	0.67694	1	0.44259	1	1.9053e-05	0.0101	0.00057896	0.299	0.76366	1	0.94644	1	0.54297	1	0.80794	1
Del Peak 19(11q23.3)	0 (0%)	122	1.4324e-07	7.76e-05	0.12011	1	0.98854	1	0.29937	1	0.2418	1	0.65733	1	0.19774	1	0.082716	1	0.094163	1	0.21615	1
Del Peak 20(12p13.31)	0 (0%)	224	0.75894	1	0.25166	1	0.47148	1	0.045403	1	0.05464	1	0.52737	1	0.97479	1	0.96727	1	0.95192	1	1	1
Del Peak 21(12q23.3)	0 (0%)	203	0.0781	1	0.013018	1	0.79114	1	0.44051	1	0.42328	1	0.54664	1	0.71261	1	0.30557	1	0.53428	1	0.47835	1
Del Peak 22(13q12.11)	0 (0%)	206	0.003999	1	0.26568	1	0.1673	1	0.66434	1	1	1	0.98139	1	0.16576	1	0.10656	1	0.21884	1	0.54338	1
Del Peak 23(13q34)	0 (0%)	205	0.24642	1	0.003467	1	0.067385	1	0.35736	1	0.91624	1	0.27895	1	0.91011	1	0.29843	1	0.8012	1	0.43453	1
Del Peak 24(14q32.2)	0 (0%)	176	7.9909e-06	0.0043	0.79925	1	0.31146	1	0.24025	1	0.0035634	1	0.63966	1	0.69887	1	0.69042	1	0.66381	1	0.47835	1
Del Peak 25(15q13.3)	0 (0%)	204	0.047276	1	0.077402	1	0.13298	1	0.3904	1	0.43542	1	0.1831	1	0.52542	1	0.73363	1	0.50405	1	0.89047	1
Del Peak 26(15q15.1)	0 (0%)	200	0.045938	1	0.02948	1	0.38315	1	0.059479	1	0.66118	1	0.39615	1	0.83865	1	0.69264	1	0.96609	1	1	1
Del Peak 27(16p13.3)	0 (0%)	218	0.40006	1	0.17589	1	0.0083357	1	0.10326	1	0.16501	1	0.267	1	0.13967	1	0.30804	1	0.21127	1	0.52929	1
Del Peak 28(16q12.1)	0 (0%)	182	0.28609	1	0.68536	1	0.015134	1	0.36965	1	0.10143	1	0.20628	1	0.19422	1	0.13158	1	0.23763	1	0.044523	1
Del Peak 29(16q24.3)	0 (0%)	174	0.0056337	1	0.56554	1	0.093393	1	0.61019	1	0.013861	1	0.055133	1	0.093506	1	0.051898	1	0.088928	1	0.032882	1
Del Peak 30(17q21.31)	0 (0%)	209	0.91269	1	0.74353	1	0.32471	1	0.77298	1	0.47941	1	0.61219	1	0.80437	1	0.35514	1	0.49796	1	0.38607	1
Del Peak 31(19p13.3)	0 (0%)	190	0.021242	1	0.6214	1	0.0026145	1	0.027502	1	0.0083782	1	0.091003	1	0.72609	1	0.27246	1	0.60574	1	0.2234	1
Del Peak 32(22q13.1)	0 (0%)	240	0.37103	1	0.34328	1	0.84755	1	0.90418	1	0.87361	1	0.55962	1	0.13501	1	0.8213	1	0.66656	1	0.86855	1
