
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering_new/STAD-TP/4470875/STAD-TP.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/STAD-TP/4434906/STAD-TP.clin.merged.picked.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=.05", "-cQ=0.25", "-MF=ALL", "-oT=STAD-TP", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=STAD-TP"
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/STAD-TP/4434906/STAD-TP.clin.merged.picked.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering_new/STAD-TP/4470875/STAD-TP.mergedcluster.txt"

nPatients in clinical file=614, in cluster file=307, common to both=307
[1]  10 307
[1] "CN_CNMF"
[1] 3
  1   2   3 
150  46 109 
  1   2   3 
150  46 109 
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3  4 
37 81 65 77 
 1  2  3  4 
37 81 65 77 
[1] "RPPA_CNMF"
[1] 3
 1  2  3 
81 91 91 
 1  2  3 
81 91 91 
[1] "RPPA_CHIERARCHICAL"
[1] 3
  1   2   3 
101  49 113 
  1   2   3 
101  49 113 
[1] "MRNASEQ_CNMF"
[1] 3
 1  2  3  4  5 
62 64 43 42 62 
 1  2  3  4  5 
62 64 43 42 62 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
 67 142  64 
  1   2   3 
 67 142  64 
[1] "MIRSEQ_CNMF"
[1] 3
  1   2   3 
102  91 114 
  1   2   3 
102  91 114 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
135  77  95 
  1   2   3 
135  77  95 
[1] "MIRSEQ_MATURE_CNMF"
[1] 3
  1   2   3 
 55  78 128 
  1   2   3 
 55  78 128 
[1] "MIRSEQ_MATURE_CHIERARCHICAL"
[1] 3
  1   2   3 
 57  72 132 
  1   2   3 
 57  72 132 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "RADIATIONTHERAPY"                      
[14] "HISTOLOGICALTYPE"                      
[15] "RADIATIONS.RADIATION.REGIMENINDICATION"
[16] "COMPLETENESS.OF.RESECTION"             
[17] "NUMBER.OF.LYMPH.NODES"                 
[18] "BATCHNUMBER"                           

Input Data has 18 rows and 307 columns.

[1] "Batch" "18"   
[1] "Last Follow UP"
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4184 TCGA-BR-4187 TCGA-BR-4188 
         171            3           NA           NA           NA           NA 
TCGA-BR-4191 TCGA-BR-4201 TCGA-BR-4253 TCGA-BR-4255 TCGA-BR-4256 TCGA-BR-4257 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4267 TCGA-BR-4279 TCGA-BR-4280 TCGA-BR-4292 TCGA-BR-4294 TCGA-BR-4357 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4361 TCGA-BR-4362 TCGA-BR-4366 TCGA-BR-4367 TCGA-BR-4368 TCGA-BR-4369 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4370 TCGA-BR-4371 TCGA-BR-6452 TCGA-BR-6453 TCGA-BR-6454 TCGA-BR-6455 
          NA           NA          257           NA           NA          399 
TCGA-BR-6456 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 
          NA          356          212          330          286           19 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
         378          420           66          353           37           20 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
          34           23           20            8           37           45 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 
          14           38            4           32           25           21 
TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 
           5          138           30           29           21            5 
TCGA-BR-7959 TCGA-BR-8058 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 
          33           34           25           40           21           29 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 
          15           14           22            8           13            8 
TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8360 TCGA-BR-8361 
          36           47           45           23            6           12 
TCGA-BR-8362 TCGA-BR-8363 TCGA-BR-8364 TCGA-BR-8365 TCGA-BR-8366 TCGA-BR-8367 
          11           10           67           90           17           33 
TCGA-BR-8368 TCGA-BR-8369 TCGA-BR-8370 TCGA-BR-8371 TCGA-BR-8372 TCGA-BR-8373 
          42           25           17           11           18           26 
TCGA-BR-8380 TCGA-BR-8381 TCGA-BR-8382 TCGA-BR-8384 TCGA-BR-8483 TCGA-BR-8484 
          21            8           13           21           25           21 
TCGA-BR-8485 TCGA-BR-8486 TCGA-BR-8487 TCGA-BR-8588 TCGA-BR-8589 TCGA-BR-8590 
           9           30           21           23           58           65 
TCGA-BR-8591 TCGA-BR-8592 TCGA-BR-8676 TCGA-BR-8677 TCGA-BR-8678 TCGA-BR-8679 
           6            6           27           15            5            5 
TCGA-BR-8680 TCGA-BR-8682 TCGA-BR-8683 TCGA-BR-8686 TCGA-BR-8687 TCGA-BR-8690 
          24           50           18           17           19           18 
TCGA-BR-A44T TCGA-BR-A44U TCGA-BR-A452 TCGA-BR-A453 TCGA-BR-A4CQ TCGA-BR-A4CR 
          13           35           20           92           68           51 
TCGA-BR-A4CS TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 
          28           18           28           12           24           NA 
TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J7 TCGA-BR-A4J8 
          24           16           13            4           14            7 
TCGA-BR-A4J9 TCGA-BR-A4PD TCGA-BR-A4PE TCGA-BR-A4PF TCGA-BR-A4QI TCGA-BR-A4QL 
           3           41           NA           22           15           68 
TCGA-BR-A4QM TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 
          17           86           99          400          401            9 
TCGA-CD-5803 TCGA-CD-5804 TCGA-CD-5813 TCGA-CD-8524 TCGA-CD-8525 TCGA-CD-8526 
           2           NA           12            2            2            2 
TCGA-CD-8527 TCGA-CD-8528 TCGA-CD-8529 TCGA-CD-8530 TCGA-CD-8531 TCGA-CD-8532 
           2            3            4            5            3            3 
TCGA-CD-8533 TCGA-CD-8534 TCGA-CD-8535 TCGA-CD-8536 TCGA-CD-A486 TCGA-CD-A487 
           4           NA            4            3            2            4 
TCGA-CD-A489 TCGA-CD-A48A TCGA-CD-A48C TCGA-CD-A4MG TCGA-CD-A4MH TCGA-CD-A4MI 
           4            4            4            2            3            3 
TCGA-CD-A4MJ TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
           3           NA           92          822          485           NA 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4442 
         242          245         1644           NA           NA           NA 
TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 
         912         1431          580          366           NA           NA 
TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4475 
          NA          576           NA          365           NA           NA 
TCGA-CG-4476 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
          NA           31           NA           NA           31           31 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
          NA          182           29         2131           NA           NA 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
          NA          944         1980          122         1674           NA 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
          NA          376          385          363          582          625 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
         573          564          566          543          406          523 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
         312          463          486          389          321          344 
TCGA-D7-6822 TCGA-D7-8570 TCGA-D7-8572 TCGA-D7-8573 TCGA-D7-8574 TCGA-D7-8575 
         374          243           26          118          127            6 
TCGA-D7-8576 TCGA-D7-8578 TCGA-D7-8579 TCGA-D7-A4YT TCGA-D7-A4YU TCGA-D7-A4YV 
          97          159          145          129          210          180 
TCGA-D7-A4YX TCGA-D7-A4YY TCGA-D7-A4Z0 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-EQ-A4SO 
         244          104          148           19          237          242 
TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-F1-A448 TCGA-FP-7735 TCGA-FP-7829 
         199           61           NA          251           12            6 
TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8210 TCGA-FP-8211 
          92          109           31           NA           NA           86 
TCGA-FP-8631 TCGA-FP-A4BE TCGA-FP-A4BF TCGA-HF-7131 TCGA-HF-7132 TCGA-HF-7133 
          17           30           47           NA           NA           NA 
TCGA-HF-7134 TCGA-HF-7136 TCGA-HJ-7597 TCGA-HU-8238 TCGA-HU-8243 TCGA-HU-8244 
          NA           NA           NA           46           NA          434 
TCGA-HU-8245 TCGA-HU-8249 TCGA-HU-8602 TCGA-HU-8604 TCGA-HU-8608 TCGA-HU-8610 
         383          431          347          368          323           23 
TCGA-HU-A4G2 TCGA-HU-A4G3 TCGA-HU-A4G6 TCGA-HU-A4G8 TCGA-HU-A4G9 TCGA-HU-A4GC 
         462          170          374          360          463           99 
TCGA-HU-A4GD TCGA-HU-A4GF TCGA-HU-A4GH TCGA-HU-A4GJ TCGA-HU-A4GN TCGA-HU-A4GP 
         429          519          358          650          640          273 
TCGA-HU-A4GQ TCGA-HU-A4GT TCGA-HU-A4GU TCGA-HU-A4GX TCGA-HU-A4GY TCGA-HU-A4H0 
          NA          198          190          310            8           64 
TCGA-HU-A4H2 TCGA-HU-A4H3 TCGA-HU-A4H4 TCGA-HU-A4H5 TCGA-HU-A4H6 TCGA-HU-A4H8 
         394          589          538          374          293          270 
TCGA-HU-A4HB TCGA-HU-A4HD TCGA-IN-7806 TCGA-IN-7808 TCGA-IN-8462 TCGA-IN-8663 
         268          834          209          108          319           NA 
TCGA-IP-7968 
          77 
Variable 1:'AGE':	nDistinctValues=51,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=31,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=150,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=11,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 14:'HISTOLOGICAL.TYPE':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=32,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'BATCH.NUMBER':	nDistinctValues=18,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "NEOPLASM.DISEASESTAGE"                 
 [3] "PATHOLOGY.T.STAGE"                     
 [4] "PATHOLOGY.N.STAGE"                     
 [5] "PATHOLOGY.M.STAGE"                     
 [6] "GENDER"                                
 [7] "HISTOLOGICAL.TYPE"                     
 [8] "RADIATIONS.RADIATION.REGIMENINDICATION"
 [9] "COMPLETENESS.OF.RESECTION"             
[10] "NUMBER.OF.LYMPH.NODES"                 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 307 columns, 1 survival variables, and 10 non-survival variables.
AGE, nv=51, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=11, binary=FALSE, numeric=FALSE
PATHOLOGY.T.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 13  75 125  84 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 13  75 125  84 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
 T1  T2  T3  T4 
 13  75 125  84 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 13  75 125  84 
PATHOLOGY.N.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
100  87  55  54 
[1] "table(vv)"
vv
 N0  N1  N2  N3 
100  87  55  54 
$ClinVariableName
[1] "PATHOLOGY.N.STAGE"

$Table
vv
 N0  N1  N2  N3 
100  87  55  54 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 N0  N1  N2  N3 
100  87  55  54 
PATHOLOGY.M.STAGE, nv=3, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=7, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE
NUMBER.OF.LYMPH.NODES, nv=32, binary=FALSE, numeric=TRUE

Clustering(1) Variable = CN_CNMF
D1V1, survival
          sevent
clus2        0   1
  subtype1 119  15
  subtype2  34   6
  subtype3  84  12
subtype1 subtype2 subtype3 
     134       40       96 
subtype1 subtype2 subtype3 
      15        6       12 
$subtype1
TCGA-B7-5816 TCGA-BR-4184 TCGA-BR-4201 TCGA-BR-4279 TCGA-BR-4280 TCGA-BR-6452 
        5.62         6.94        30.90         9.57         6.61         8.45 
TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 
       13.12        11.70        10.85         9.40        12.43        13.81 
TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6802 TCGA-BR-6803 
        2.17        11.61         1.22         0.66         0.76         0.66 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7722 TCGA-BR-7851 
        0.26         1.22         0.46         0.13         0.16         0.99 
TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-8058 TCGA-BR-8059 TCGA-BR-8078 TCGA-BR-8080 
        0.69         0.16         1.12         0.82         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8291 TCGA-BR-8296 TCGA-BR-8297 
        0.46         0.72         0.26         1.18         1.48         0.76 
TCGA-BR-8360 TCGA-BR-8363 TCGA-BR-8364 TCGA-BR-8365 TCGA-BR-8366 TCGA-BR-8367 
        0.20         0.33         2.20         2.96         0.56         1.08 
TCGA-BR-8368 TCGA-BR-8370 TCGA-BR-8371 TCGA-BR-8372 TCGA-BR-8380 TCGA-BR-8381 
        1.38         0.56         0.36         0.59         0.69         0.26 
TCGA-BR-8382 TCGA-BR-8384 TCGA-BR-8487 TCGA-BR-8588 TCGA-BR-8589 TCGA-BR-8590 
        0.43         0.69         0.69         0.76         1.91         2.14 
TCGA-BR-8591 TCGA-BR-8592 TCGA-BR-8676 TCGA-BR-8677 TCGA-BR-8680 TCGA-BR-8686 
        0.20         0.20         0.89         0.49         0.79         0.56 
TCGA-BR-A44T TCGA-BR-A453 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ 
        0.43         3.02         0.59         0.92         0.39         0.79 
TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J7 TCGA-BR-A4J9 
        0.79         0.53         0.43         0.13         0.46         0.10 
TCGA-BR-A4QL TCGA-BR-A4QM TCGA-CD-5798 TCGA-CD-5803 TCGA-CD-8529 TCGA-CD-8531 
        2.24         0.56         2.83         0.07         0.13         0.10 
TCGA-CD-8532 TCGA-CD-8536 TCGA-CD-A4MI TCGA-CD-A4MJ TCGA-CG-4306 TCGA-CG-4441 
        0.10         0.10         0.10         0.10         1.02        14.01 
TCGA-CG-4455 TCGA-CG-4465 TCGA-CG-4477 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 
       12.03         8.98         1.02         6.94         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 
        5.98         0.95        70.06        65.10        21.07         7.99 
TCGA-D7-5577 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6818 TCGA-D7-8572 TCGA-D7-8574 
       12.36        18.61        17.85        10.55         0.85         4.18 
TCGA-D7-8579 TCGA-D7-A4YV TCGA-D7-A4YX TCGA-D7-A4YY TCGA-D7-A4Z0 TCGA-F1-6177 
        4.77         5.92         8.02         3.42         4.87         6.54 
TCGA-F1-A448 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8210 TCGA-HJ-7597 
        8.25         3.02         3.58        59.05         5.03        26.43 
TCGA-HU-8244 TCGA-HU-8602 TCGA-HU-8604 TCGA-HU-8608 TCGA-HU-8610 TCGA-HU-A4G2 
       14.27        11.41        12.10        10.62         0.76        15.19 
TCGA-HU-A4G3 TCGA-HU-A4G8 TCGA-HU-A4G9 TCGA-HU-A4GC TCGA-HU-A4GJ TCGA-HU-A4GN 
        5.59        11.84        15.22         3.25        21.37        21.04 
TCGA-HU-A4GP TCGA-HU-A4GT TCGA-HU-A4GX TCGA-HU-A4GY TCGA-HU-A4H3 TCGA-HU-A4H6 
        8.98         6.51        10.19         0.26        19.36         9.63 
TCGA-HU-A4H8 TCGA-HU-A4HB 
        8.88         8.81 

$subtype2
TCGA-B7-5818 TCGA-BR-6801 TCGA-BR-7704 TCGA-BR-8483 TCGA-BR-8486 TCGA-BR-8679 
        0.10         1.12         1.25         0.82         0.99         0.16 
TCGA-BR-8683 TCGA-BR-8690 TCGA-BR-A452 TCGA-BR-A4J8 TCGA-CD-5801 TCGA-CD-8528 
        0.59         0.59         0.66         0.23        13.18         0.10 
TCGA-CD-8530 TCGA-CD-A4MG TCGA-CD-A4MH TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4305 
        0.16         0.07         0.10        20.02        27.02        15.95 
TCGA-CG-4436 TCGA-CG-4440 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-5718 TCGA-CG-5726 
        7.96         4.01        18.94         7.07         1.02        28.96 
TCGA-CG-5727 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6521 TCGA-D7-6528 TCGA-D7-8570 
       31.04        12.66        19.13        18.54        15.22         7.99 
TCGA-D7-8573 TCGA-D7-8578 TCGA-D7-A4YT TCGA-F1-6874 TCGA-FP-7829 TCGA-HU-A4G6 
        3.88         5.23         4.24         2.01         0.20        12.30 
TCGA-HU-A4GQ TCGA-HU-A4H0 TCGA-HU-A4H2 TCGA-HU-A4H4 
        0.10         2.10        12.95        17.69 

$subtype3
TCGA-BR-4183 TCGA-BR-4267 TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-7197 TCGA-BR-7715 
        6.61         6.15         6.97         0.62         1.48         1.05 
TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7723 TCGA-BR-7901 TCGA-BR-7959 TCGA-BR-8060 
        0.82         0.69         4.54         0.95         1.08         1.32 
TCGA-BR-8077 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8295 TCGA-BR-8361 TCGA-BR-8362 
        0.69         0.43         0.26         1.55         0.39         0.36 
TCGA-BR-8369 TCGA-BR-8373 TCGA-BR-8484 TCGA-BR-8485 TCGA-BR-8678 TCGA-BR-8682 
        0.82         0.85         0.69         0.30         0.16         1.64 
TCGA-BR-8687 TCGA-BR-A44U TCGA-BR-A4CQ TCGA-BR-A4CR TCGA-BR-A4CS TCGA-BR-A4J1 
        0.62         1.15         2.24         1.68         0.92         0.72 
TCGA-BR-A4PD TCGA-BR-A4PF TCGA-BR-A4QI TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 
        1.35         0.72         0.49         3.25        13.15         0.30 
TCGA-CD-8524 TCGA-CD-8525 TCGA-CD-8526 TCGA-CD-8527 TCGA-CD-8533 TCGA-CD-8535 
        0.07         0.07         0.07         0.07         0.13         0.13 
TCGA-CD-A486 TCGA-CD-A487 TCGA-CD-A489 TCGA-CD-A48A TCGA-CD-A48C TCGA-CG-4301 
        0.07         0.13         0.13         0.13         0.13         3.02 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4460 
        8.05        54.05        29.98        47.05        19.07        21.99 
TCGA-CG-4472 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5579 
       12.00        12.03        15.02         4.01        55.04        11.93 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 
       20.55        18.84        13.35        17.19        10.26        15.98 
TCGA-D7-6817 TCGA-D7-6820 TCGA-D7-6822 TCGA-D7-8575 TCGA-D7-8576 TCGA-D7-A4YU 
       12.79        11.31        12.30         0.20         3.19         6.90 
TCGA-EQ-5647 TCGA-EQ-8122 TCGA-EQ-A4SO TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-8099 
        0.62         7.79         7.96        72.23         0.39         1.02 
TCGA-FP-8211 TCGA-FP-8631 TCGA-FP-A4BF TCGA-HU-8238 TCGA-HU-8243 TCGA-HU-8245 
        2.83         0.56         1.55         1.51         5.92        12.59 
TCGA-HU-8249 TCGA-HU-A4GD TCGA-HU-A4GF TCGA-HU-A4GH TCGA-HU-A4GU TCGA-HU-A4H5 
       14.17        14.10        17.06        11.77         6.25        12.30 
TCGA-HU-A4HD TCGA-IN-7806 TCGA-IN-7808 TCGA-IN-8462 TCGA-IN-8663 TCGA-IP-7968 
       27.42         6.87         3.55        10.49         3.39         2.53 

subtype1 subtype2 subtype3 
    0.07     0.07     0.07 
subtype1 subtype2 subtype3 
   70.06    31.04    72.23 
subtype1 subtype2 subtype3 
   1.300    3.945    2.385 
[1] "0.1 - 70.1 (1.3)" "0.1 - 31.0 (3.9)" "0.1 - 72.2 (2.4)"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [31] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [37] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [43] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [49] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [55] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [67] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [73] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [85] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
 [91] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
 [97] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[103] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[109] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[115] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[121] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[127] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[133] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[145] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[151] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[157] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[163] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[169] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[175] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[181] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[193] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[199] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[205] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[211] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[217] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[223] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[229] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[235] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[241] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[247] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[253] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[259] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[265] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [31] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [37] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [43] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [49] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [55] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [67] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [73] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [85] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
 [91] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
 [97] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[103] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[109] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[115] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[121] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[127] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[133] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[145] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[151] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[157] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[163] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[169] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[175] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[181] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[193] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[199] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[205] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[211] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[217] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[223] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[229] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[235] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[241] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[247] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[253] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[259] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[265] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [31] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [37] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [43] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [49] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [55] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [67] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [73] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [85] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
 [91] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
 [97] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[103] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[109] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[115] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[121] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[127] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[133] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[145] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[151] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[157] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[163] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[169] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[175] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[181] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[193] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[199] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[205] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[211] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[217] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[223] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[229] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[235] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[241] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[247] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[253] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[259] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[265] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
D1V2, continuous
          vv
clus       STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB STAGE III
  subtype1       1        5       11       11        18        21         2
  subtype2       1        3       10        5         4         2         0
  subtype3       0        3        7       12         9        20         1
          vv
clus       STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  subtype1         19         22         18       15
  subtype2          6          6          3        3
  subtype3         23         10          8       11
D1V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1  7 32 54 52
  subtype2  4 17 18  6
  subtype3  2 26 51 26
D1V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 46 42 29 28
  subtype2 22  5  7  9
  subtype3 30 40 19 17
D1V5, multiclass
          vv
clus        M0  M1  MX
  subtype1 133  12   5
  subtype2  45   1   0
  subtype3  93   7   9
D1V6, multiclass
D1V7, binary
          cls
clus        0  1
  subtype1 71 79
  subtype2 16 30
  subtype3 32 77
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   71   79
  subtype2   16   30
  subtype3   32   77
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       71       16       32
  MALE         79       30       77
          vv
clus       STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  subtype1                                    34
  subtype2                                     7
  subtype3                                    10
          vv
clus       STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                     73
  subtype2                                                     15
  subtype3                                                     55
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                                19
  subtype2                                                                11
  subtype3                                                                15
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  subtype1                                               13
  subtype2                                               11
  subtype3                                               16
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  subtype1                                                        8
  subtype2                                                        1
  subtype3                                                        6
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  subtype1                                                         1
  subtype2                                                         1
  subtype3                                                         4
          vv
clus       STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  subtype1                                        2
  subtype2                                        0
  subtype3                                        1
D1V8, multiclass
D1V9, binary
          cls
clus         0   1
  subtype1   2 148
  subtype2   0  46
  subtype3   5 104
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2  148
  subtype2    0   46
  subtype3    5  104
     clus
vv    subtype1 subtype2 subtype3
  NO         2        0        5
  YES      148       46      104
          vv
clus        R0  R1  R2  RX
  subtype1 120   3   6  14
  subtype2  38   2   1   3
  subtype3  83   5   5   7
D1V10, multiclass
D1V11, continuous

Clustering(2) Variable = METHLYATION_CNMF
D2V1, survival
          sevent
clus2       0  1
  subtype1 35  2
  subtype2 70  7
  subtype3 57  5
  subtype4 65  7
subtype1 subtype2 subtype3 subtype4 
      37       77       62       72 
subtype1 subtype2 subtype3 subtype4 
       2        7        5        7 
$subtype1
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6852 
        5.62         0.10        13.12         2.17        11.61         0.26 
TCGA-BR-7196 TCGA-BR-7958 TCGA-BR-8078 TCGA-BR-8081 TCGA-BR-8285 TCGA-BR-8363 
        1.22         0.16         0.95         0.46         0.26         0.33 
TCGA-BR-8366 TCGA-BR-8370 TCGA-BR-8381 TCGA-BR-8382 TCGA-BR-8589 TCGA-BR-8676 
        0.56         0.56         0.26         0.43         1.91         0.89 
TCGA-BR-8686 TCGA-BR-A4IY TCGA-BR-A4J4 TCGA-CD-5801 TCGA-CD-8531 TCGA-CG-5722 
        0.56         0.39         0.53        13.18         0.10         0.95 
TCGA-D7-5577 TCGA-D7-8570 TCGA-D7-8573 TCGA-D7-A4YX TCGA-FP-7916 TCGA-FP-7998 
       12.36         7.99         3.88         8.02         3.02         3.58 
TCGA-HU-8602 TCGA-HU-8604 TCGA-HU-8608 TCGA-HU-A4G2 TCGA-HU-A4G6 TCGA-HU-A4GQ 
       11.41        12.10        10.62        15.19        12.30         0.10 
TCGA-HU-A4H0 
        2.10 

$subtype2
TCGA-BR-6452 TCGA-BR-6458 TCGA-BR-6566 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7717 
        8.45         6.97        12.43         0.46         0.13         0.69 
TCGA-BR-7851 TCGA-BR-7959 TCGA-BR-8284 TCGA-BR-8286 TCGA-BR-8297 TCGA-BR-8360 
        0.99         1.08         0.72         0.43         0.76         0.20 
TCGA-BR-8361 TCGA-BR-8362 TCGA-BR-8367 TCGA-BR-8368 TCGA-BR-8369 TCGA-BR-8372 
        0.39         0.36         1.08         1.38         0.82         0.59 
TCGA-BR-8487 TCGA-BR-8591 TCGA-BR-8679 TCGA-BR-8680 TCGA-BR-8682 TCGA-BR-A44U 
        0.69         0.20         0.16         0.79         1.64         1.15 
TCGA-BR-A4CQ TCGA-BR-A4CS TCGA-BR-A4J8 TCGA-BR-A4PF TCGA-BR-A4QI TCGA-BR-A4QL 
        2.24         0.92         0.23         0.72         0.49         2.24 
TCGA-BR-A4QM TCGA-CD-8524 TCGA-CD-8528 TCGA-CD-8533 TCGA-CD-8535 TCGA-CD-8536 
        0.56         0.07         0.10         0.13         0.13         0.10 
TCGA-CD-A48C TCGA-CD-A4MG TCGA-CD-A4MI TCGA-CD-A4MJ TCGA-CG-4437 TCGA-CG-5720 
        0.13         0.07         0.10         0.10         8.05         0.99 
TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5733 TCGA-D7-6525 TCGA-D7-6528 
       12.03        28.96        65.10        21.07        13.35        15.22 
TCGA-D7-6822 TCGA-D7-8575 TCGA-D7-A4YU TCGA-D7-A4YV TCGA-D7-A4YY TCGA-D7-A4Z0 
       12.30         0.20         6.90         5.92         3.42         4.87 
TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-A448 TCGA-FP-7829 TCGA-FP-8099 TCGA-FP-A4BE 
        6.54         2.01         8.25         0.20         1.02         0.99 
TCGA-FP-A4BF TCGA-HU-8238 TCGA-HU-8244 TCGA-HU-A4G3 TCGA-HU-A4G8 TCGA-HU-A4G9 
        1.55         1.51        14.27         5.59        11.84        15.22 
TCGA-HU-A4GC TCGA-HU-A4GN TCGA-HU-A4GP TCGA-HU-A4GT TCGA-HU-A4GU TCGA-HU-A4H3 
        3.25        21.04         8.98         6.51         6.25        19.36 
TCGA-HU-A4H4 TCGA-HU-A4H6 TCGA-HU-A4H8 TCGA-IN-8462 TCGA-IN-8663 
       17.69         9.63         8.88        10.49         3.39 

$subtype3
TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6705 TCGA-BR-6709 TCGA-BR-6710 
       11.70        10.85         9.40        13.81         1.22         0.66 
TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-7957 TCGA-BR-8058 TCGA-BR-8059 TCGA-BR-8080 
        0.76         0.66         0.69         1.12         0.82         0.49 
TCGA-BR-8291 TCGA-BR-8296 TCGA-BR-8364 TCGA-BR-8365 TCGA-BR-8371 TCGA-BR-8380 
        1.18         1.48         2.20         2.96         0.36         0.69 
TCGA-BR-8384 TCGA-BR-8484 TCGA-BR-8588 TCGA-BR-8590 TCGA-BR-8592 TCGA-BR-8677 
        0.69         0.69         0.76         2.14         0.20         0.49 
TCGA-BR-8683 TCGA-BR-A44T TCGA-BR-A453 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ 
        0.59         0.43         3.02         0.59         0.92         0.79 
TCGA-BR-A4J2 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J7 TCGA-BR-A4J9 TCGA-CD-5798 
        0.79         0.43         0.13         0.46         0.10         2.83 
TCGA-CD-5803 TCGA-CD-8526 TCGA-CD-8529 TCGA-CD-8532 TCGA-CD-A489 TCGA-CG-5717 
        0.07         0.07         0.13         0.10         0.13         6.94 
TCGA-CG-5719 TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5734 TCGA-D7-5579 TCGA-D7-6518 
        1.02         5.98        70.06         7.99        11.93        19.13 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-8574 TCGA-D7-8578 TCGA-D7-8579 
       18.54        18.61        17.85         4.18         5.23         4.77 
TCGA-FP-8209 TCGA-FP-8210 TCGA-HJ-7597 TCGA-HU-8610 TCGA-HU-A4GJ TCGA-HU-A4GY 
       59.05         5.03        26.43         0.76        21.37         0.26 
TCGA-HU-A4HB TCGA-IN-7808 
        8.81         3.55 

$subtype4
TCGA-BR-6565 TCGA-BR-6801 TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7715 TCGA-BR-7716 
        0.62         1.12         1.48         1.25         1.05         0.82 
TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7901 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8289 
        0.16         4.54         0.95         1.32         0.69         0.26 
TCGA-BR-8295 TCGA-BR-8373 TCGA-BR-8483 TCGA-BR-8485 TCGA-BR-8486 TCGA-BR-8678 
        1.55         0.85         0.82         0.30         0.99         0.16 
TCGA-BR-8687 TCGA-BR-8690 TCGA-BR-A452 TCGA-BR-A4CR TCGA-BR-A4J1 TCGA-BR-A4PD 
        0.62         0.59         0.66         1.68         0.72         1.35 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5813 TCGA-CD-8525 TCGA-CD-8527 
        3.25        13.15         0.30         0.39         0.07         0.07 
TCGA-CD-8530 TCGA-CD-A486 TCGA-CD-A487 TCGA-CD-A48A TCGA-CD-A4MH TCGA-CG-4441 
        0.16         0.07         0.13         0.13         0.10        14.01 
TCGA-CG-5718 TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5578 
        1.02        15.02        31.04         4.01        55.04        12.66 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6817 
       20.55        18.84        17.19        10.26        15.98        12.79 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-8572 TCGA-D7-8576 TCGA-D7-A4YT TCGA-EQ-5647 
       10.55        11.31         0.85         3.19         4.24         0.62 
TCGA-EQ-8122 TCGA-EQ-A4SO TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-8211 TCGA-FP-8631 
        7.79         7.96        72.23         0.39         2.83         0.56 
TCGA-HU-8243 TCGA-HU-8245 TCGA-HU-8249 TCGA-HU-A4GD TCGA-HU-A4GF TCGA-HU-A4GH 
        5.92        12.59        14.17        14.10        17.06        11.77 
TCGA-HU-A4GX TCGA-HU-A4H2 TCGA-HU-A4H5 TCGA-HU-A4HD TCGA-IN-7806 TCGA-IP-7968 
       10.19        12.95        12.30        27.42         6.87         2.53 

subtype1 subtype2 subtype3 subtype4 
    0.10     0.07     0.07     0.07 
subtype1 subtype2 subtype3 subtype4 
   15.19    65.10    70.06    72.23 
subtype1 subtype2 subtype3 subtype4 
   1.220    1.380    1.070    1.615 
[1] "0.1 - 15.2 (1.2)" "0.1 - 65.1 (1.4)" "0.1 - 70.1 (1.1)" "0.1 - 72.2 (1.6)"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
  [7] "subtype3" "subtype3" "subtype4" "subtype2" "subtype3" "subtype1"
 [13] "subtype1" "subtype3" "subtype3" "subtype4" "subtype3" "subtype3"
 [19] "subtype1" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
 [25] "subtype4" "subtype4" "subtype2" "subtype4" "subtype4" "subtype2"
 [31] "subtype4" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [37] "subtype4" "subtype4" "subtype1" "subtype3" "subtype1" "subtype2"
 [43] "subtype1" "subtype2" "subtype4" "subtype3" "subtype4" "subtype3"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [55] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [61] "subtype3" "subtype2" "subtype4" "subtype3" "subtype1" "subtype1"
 [67] "subtype3" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
 [73] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [79] "subtype3" "subtype4" "subtype2" "subtype2" "subtype2" "subtype3"
 [85] "subtype1" "subtype4" "subtype4" "subtype3" "subtype2" "subtype4"
 [91] "subtype3" "subtype2" "subtype4" "subtype2" "subtype3" "subtype3"
 [97] "subtype1" "subtype3" "subtype4" "subtype3" "subtype1" "subtype3"
[103] "subtype3" "subtype3" "subtype2" "subtype3" "subtype4" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype3" "subtype4" "subtype4"
[115] "subtype1" "subtype4" "subtype3" "subtype4" "subtype2" "subtype4"
[121] "subtype3" "subtype4" "subtype2" "subtype3" "subtype4" "subtype1"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype4" "subtype4"
[133] "subtype3" "subtype4" "subtype2" "subtype2" "subtype4" "subtype2"
[139] "subtype2" "subtype2" "subtype4" "subtype3" "subtype4" "subtype3"
[145] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype4"
[151] "subtype2" "subtype4" "subtype2" "subtype4" "subtype4" "subtype2"
[157] "subtype3" "subtype1" "subtype4" "subtype3" "subtype3" "subtype4"
[163] "subtype4" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
[169] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype4"
[175] "subtype2" "subtype1" "subtype4" "subtype1" "subtype3" "subtype2"
[181] "subtype4" "subtype3" "subtype3" "subtype4" "subtype2" "subtype2"
[187] "subtype1" "subtype2" "subtype2" "subtype4" "subtype4" "subtype4"
[193] "subtype2" "subtype2" "subtype4" "subtype2" "subtype4" "subtype2"
[199] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype4"
[205] "subtype4" "subtype2" "subtype2" "subtype3" "subtype2" "subtype4"
[211] "subtype2" "subtype4" "subtype4" "subtype1" "subtype1" "subtype1"
[217] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[223] "subtype2" "subtype4" "subtype4" "subtype4" "subtype3" "subtype2"
[229] "subtype2" "subtype1" "subtype2" "subtype2" "subtype4" "subtype3"
[235] "subtype1" "subtype4" "subtype2" "subtype2" "subtype4" "subtype2"
[241] "subtype2" "subtype3" "subtype4" "subtype4" "subtype3" "subtype2"
[247] "subtype2" "subtype4"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
  [7] "subtype3" "subtype3" "subtype4" "subtype2" "subtype3" "subtype1"
 [13] "subtype1" "subtype3" "subtype3" "subtype4" "subtype3" "subtype3"
 [19] "subtype1" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
 [25] "subtype4" "subtype4" "subtype2" "subtype4" "subtype4" "subtype2"
 [31] "subtype4" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [37] "subtype4" "subtype4" "subtype1" "subtype3" "subtype1" "subtype2"
 [43] "subtype1" "subtype2" "subtype4" "subtype3" "subtype4" "subtype3"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [55] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [61] "subtype3" "subtype2" "subtype4" "subtype3" "subtype1" "subtype1"
 [67] "subtype3" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
 [73] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [79] "subtype3" "subtype4" "subtype2" "subtype2" "subtype2" "subtype3"
 [85] "subtype1" "subtype4" "subtype4" "subtype3" "subtype2" "subtype4"
 [91] "subtype3" "subtype2" "subtype4" "subtype2" "subtype3" "subtype3"
 [97] "subtype1" "subtype3" "subtype4" "subtype3" "subtype1" "subtype3"
[103] "subtype3" "subtype3" "subtype2" "subtype3" "subtype4" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype3" "subtype4" "subtype4"
[115] "subtype1" "subtype4" "subtype3" "subtype4" "subtype2" "subtype4"
[121] "subtype3" "subtype4" "subtype2" "subtype3" "subtype4" "subtype1"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype4" "subtype4"
[133] "subtype3" "subtype4" "subtype2" "subtype2" "subtype4" "subtype2"
[139] "subtype2" "subtype2" "subtype4" "subtype3" "subtype4" "subtype3"
[145] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype4"
[151] "subtype2" "subtype4" "subtype2" "subtype4" "subtype4" "subtype2"
[157] "subtype3" "subtype1" "subtype4" "subtype3" "subtype3" "subtype4"
[163] "subtype4" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
[169] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype4"
[175] "subtype2" "subtype1" "subtype4" "subtype1" "subtype3" "subtype2"
[181] "subtype4" "subtype3" "subtype3" "subtype4" "subtype2" "subtype2"
[187] "subtype1" "subtype2" "subtype2" "subtype4" "subtype4" "subtype4"
[193] "subtype2" "subtype2" "subtype4" "subtype2" "subtype4" "subtype2"
[199] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype4"
[205] "subtype4" "subtype2" "subtype2" "subtype3" "subtype2" "subtype4"
[211] "subtype2" "subtype4" "subtype4" "subtype1" "subtype1" "subtype1"
[217] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[223] "subtype2" "subtype4" "subtype4" "subtype4" "subtype3" "subtype2"
[229] "subtype2" "subtype1" "subtype2" "subtype2" "subtype4" "subtype3"
[235] "subtype1" "subtype4" "subtype2" "subtype2" "subtype4" "subtype2"
[241] "subtype2" "subtype3" "subtype4" "subtype4" "subtype3" "subtype2"
[247] "subtype2" "subtype4"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
  [7] "subtype3" "subtype3" "subtype4" "subtype2" "subtype3" "subtype1"
 [13] "subtype1" "subtype3" "subtype3" "subtype4" "subtype3" "subtype3"
 [19] "subtype1" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
 [25] "subtype4" "subtype4" "subtype2" "subtype4" "subtype4" "subtype2"
 [31] "subtype4" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [37] "subtype4" "subtype4" "subtype1" "subtype3" "subtype1" "subtype2"
 [43] "subtype1" "subtype2" "subtype4" "subtype3" "subtype4" "subtype3"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [55] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [61] "subtype3" "subtype2" "subtype4" "subtype3" "subtype1" "subtype1"
 [67] "subtype3" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
 [73] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [79] "subtype3" "subtype4" "subtype2" "subtype2" "subtype2" "subtype3"
 [85] "subtype1" "subtype4" "subtype4" "subtype3" "subtype2" "subtype4"
 [91] "subtype3" "subtype2" "subtype4" "subtype2" "subtype3" "subtype3"
 [97] "subtype1" "subtype3" "subtype4" "subtype3" "subtype1" "subtype3"
[103] "subtype3" "subtype3" "subtype2" "subtype3" "subtype4" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype3" "subtype4" "subtype4"
[115] "subtype1" "subtype4" "subtype3" "subtype4" "subtype2" "subtype4"
[121] "subtype3" "subtype4" "subtype2" "subtype3" "subtype4" "subtype1"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype4" "subtype4"
[133] "subtype3" "subtype4" "subtype2" "subtype2" "subtype4" "subtype2"
[139] "subtype2" "subtype2" "subtype4" "subtype3" "subtype4" "subtype3"
[145] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype4"
[151] "subtype2" "subtype4" "subtype2" "subtype4" "subtype4" "subtype2"
[157] "subtype3" "subtype1" "subtype4" "subtype3" "subtype3" "subtype4"
[163] "subtype4" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
[169] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype4"
[175] "subtype2" "subtype1" "subtype4" "subtype1" "subtype3" "subtype2"
[181] "subtype4" "subtype3" "subtype3" "subtype4" "subtype2" "subtype2"
[187] "subtype1" "subtype2" "subtype2" "subtype4" "subtype4" "subtype4"
[193] "subtype2" "subtype2" "subtype4" "subtype2" "subtype4" "subtype2"
[199] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype4"
[205] "subtype4" "subtype2" "subtype2" "subtype3" "subtype2" "subtype4"
[211] "subtype2" "subtype4" "subtype4" "subtype1" "subtype1" "subtype1"
[217] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[223] "subtype2" "subtype4" "subtype4" "subtype4" "subtype3" "subtype2"
[229] "subtype2" "subtype1" "subtype2" "subtype2" "subtype4" "subtype3"
[235] "subtype1" "subtype4" "subtype2" "subtype2" "subtype4" "subtype2"
[241] "subtype2" "subtype3" "subtype4" "subtype4" "subtype3" "subtype2"
[247] "subtype2" "subtype4"
D2V2, continuous
          vv
clus       STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB STAGE III
  subtype1       0        1        1        0         5         8         0
  subtype2       2        5       10        7        12        11         0
  subtype3       0        1        5        7         8         8         2
  subtype4       0        3        6       11         7        15         0
          vv
clus       STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  subtype1          5          8          7        2
  subtype2         11         12          8        3
  subtype3         11          9          7        7
  subtype4         15          8          6        6
D2V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1  1  2 17 17
  subtype2  7 21 35 18
  subtype3  1 14 25 25
  subtype4  2 23 37 15
D2V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 13  9  5 10
  subtype2 32 19 14 16
  subtype3 21 17 16 10
  subtype4 26 24 14 13
D2V5, multiclass
          vv
clus       M0 M1 MX
  subtype1 33  2  2
  subtype2 77  2  2
  subtype3 58  6  1
  subtype4 67  3  7
D2V6, multiclass
D2V7, binary
          cls
clus        0  1
  subtype1 13 24
  subtype2 30 51
  subtype3 26 39
  subtype4 29 48
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   13   24
  subtype2   30   51
  subtype3   26   39
  subtype4   29   48
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       13       30       26       29
  MALE         24       51       39       48
          vv
clus       STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  subtype1                                     9
  subtype2                                    10
  subtype3                                    21
  subtype4                                     6
          vv
clus       STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                     18
  subtype2                                                     38
  subtype3                                                     26
  subtype4                                                     34
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                                 3
  subtype2                                                                11
  subtype3                                                                 8
  subtype4                                                                14
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  subtype1                                                6
  subtype2                                               15
  subtype3                                                2
  subtype4                                               16
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  subtype1                                                        0
  subtype2                                                        5
  subtype3                                                        6
  subtype4                                                        3
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  subtype1                                                         1
  subtype2                                                         1
  subtype3                                                         0
  subtype4                                                         4
          vv
clus       STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  subtype1                                        0
  subtype2                                        1
  subtype3                                        2
  subtype4                                        0
D2V8, multiclass
D2V9, binary
          cls
clus        0  1
  subtype1  0 37
  subtype2  1 80
  subtype3  0 65
  subtype4  6 71
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0   37
  subtype2    1   80
  subtype3    0   65
  subtype4    6   71
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         0        1        0        6
  YES       37       80       65       71
          vv
clus       R0 R1 R2
  subtype1 35  0  1
  subtype2 74  1  1
  subtype3 54  5  1
  subtype4 64  3  2
D2V10, multiclass
D2V11, continuous

Clustering(3) Variable = RPPA_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1 59 12
  subtype2 77  3
  subtype3 66 12
subtype1 subtype2 subtype3 
      71       80       78 
subtype1 subtype2 subtype3 
      12        3       12 
$subtype1
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4184 TCGA-BR-4201 TCGA-BR-4267 TCGA-BR-4280 
        5.62         0.10         6.94        30.90         6.15         6.61 
TCGA-BR-6452 TCGA-BR-6566 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6802 TCGA-BR-6852 
        8.45        12.43         1.22         0.66         0.76         0.26 
TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7958 TCGA-BR-8060 TCGA-BR-8285 TCGA-BR-8286 
        0.99         0.95         0.16         1.32         0.26         0.43 
TCGA-BR-8289 TCGA-BR-8360 TCGA-BR-8361 TCGA-BR-8363 TCGA-BR-8366 TCGA-BR-8372 
        0.26         0.20         0.39         0.33         0.56         0.59 
TCGA-BR-8381 TCGA-BR-8382 TCGA-BR-8484 TCGA-BR-8589 TCGA-BR-8591 TCGA-BR-8676 
        0.26         0.43         0.69         1.91         0.20         0.89 
TCGA-BR-8680 TCGA-BR-8690 TCGA-BR-A4CR TCGA-BR-A4J8 TCGA-BR-A4PF TCGA-BR-A4QL 
        0.79         0.59         1.68         0.23         0.72         2.24 
TCGA-BR-A4QM TCGA-CD-8526 TCGA-CD-8528 TCGA-CD-8529 TCGA-CD-8531 TCGA-CD-8535 
        0.56         0.07         0.10         0.13         0.10         0.13 
TCGA-CD-A487 TCGA-CD-A4MG TCGA-CG-4300 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
        0.13         0.07        20.02         1.02         7.96         8.05 
TCGA-CG-4469 TCGA-CG-5723 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-6525 TCGA-D7-6528 
        7.07        70.06        21.07         7.99        13.35        15.22 
TCGA-D7-6815 TCGA-D7-6820 TCGA-D7-6822 TCGA-D7-8570 TCGA-D7-8573 TCGA-D7-A4YU 
       15.98        11.31        12.30         7.99         3.88         6.90 
TCGA-D7-A4YX TCGA-EQ-8122 TCGA-F1-6874 TCGA-HJ-7597 TCGA-HU-8602 TCGA-HU-A4GF 
        8.02         7.79         2.01        26.43        11.41        17.06 
TCGA-HU-A4GQ TCGA-HU-A4GT TCGA-HU-A4GU TCGA-HU-A4GX TCGA-IP-7968 
        0.10         6.51         6.25        10.19         2.53 

$subtype2
TCGA-BR-4183 TCGA-BR-4279 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6705 
        6.61         9.57        11.70         6.97         9.40        13.81 
TCGA-BR-6706 TCGA-BR-6801 TCGA-BR-6803 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7717 
        2.17         1.12         0.66         1.22         1.48         0.69 
TCGA-BR-7722 TCGA-BR-7957 TCGA-BR-7959 TCGA-BR-8058 TCGA-BR-8059 TCGA-BR-8080 
        0.16         0.69         1.08         1.12         0.82         0.49 
TCGA-BR-8081 TCGA-BR-8291 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8362 TCGA-BR-8364 
        0.46         1.18         1.48         0.76         0.36         2.20 
TCGA-BR-8365 TCGA-BR-8367 TCGA-BR-8369 TCGA-BR-8370 TCGA-BR-8371 TCGA-BR-8380 
        2.96         1.08         0.82         0.56         0.36         0.69 
TCGA-BR-8384 TCGA-BR-8483 TCGA-BR-8486 TCGA-BR-8588 TCGA-BR-8592 TCGA-BR-8677 
        0.69         0.82         0.99         0.76         0.20         0.49 
TCGA-BR-8682 TCGA-BR-8683 TCGA-BR-A44T TCGA-BR-A452 TCGA-BR-A453 TCGA-BR-A4CQ 
        1.64         0.59         0.43         0.66         3.02         2.24 
TCGA-BR-A4CS TCGA-BR-A4IU TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J5 TCGA-BR-A4J7 
        0.92         0.59         0.39         0.79         0.43         0.46 
TCGA-BR-A4J9 TCGA-BR-A4QI TCGA-CD-5798 TCGA-CD-5803 TCGA-CD-5813 TCGA-CD-8524 
        0.10         0.49         2.83         0.07         0.39         0.07 
TCGA-CD-8525 TCGA-CD-8530 TCGA-CD-A489 TCGA-CD-A4MH TCGA-CG-4301 TCGA-CG-4455 
        0.07         0.16         0.13         0.10         3.02        12.03 
TCGA-CG-4472 TCGA-CG-4477 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5728 
       12.00         1.02         6.94         1.02         1.02        65.10 
TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6521 TCGA-D7-6524 TCGA-D7-8572 TCGA-D7-8574 
       11.93        19.13        18.54        17.85         0.85         4.18 
TCGA-D7-A4Z0 TCGA-F1-A448 TCGA-FP-7916 TCGA-HU-8610 TCGA-HU-A4H3 TCGA-HU-A4H4 
        4.87         8.25         3.02         0.76        19.36        17.69 
TCGA-HU-A4H5 TCGA-IN-8462 
       12.30        10.49 

$subtype3
TCGA-BR-6455 TCGA-BR-6565 TCGA-BR-6707 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7715 
       13.12         0.62        11.61         0.46         1.25         1.05 
TCGA-BR-7716 TCGA-BR-7723 TCGA-BR-8284 TCGA-BR-8295 TCGA-BR-8368 TCGA-BR-8485 
        0.82         4.54         0.72         1.55         1.38         0.30 
TCGA-BR-8590 TCGA-BR-8678 TCGA-BR-8679 TCGA-BR-8686 TCGA-BR-8687 TCGA-BR-A44U 
        2.14         0.16         0.16         0.56         0.62         1.15 
TCGA-BR-A4IV TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J6 TCGA-BR-A4PD 
        0.92         0.72         0.79         0.53         0.13         1.35 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-8527 TCGA-CD-8532 
        3.25        13.15        13.18         0.30         0.07         0.10 
TCGA-CD-8533 TCGA-CD-8536 TCGA-CD-A486 TCGA-CD-A48A TCGA-CD-A48C TCGA-CD-A4MI 
        0.13         0.10         0.07         0.13         0.13         0.10 
TCGA-CD-A4MJ TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4438 TCGA-CG-4443 TCGA-CG-4444 
        0.10        27.02        15.95        54.05        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-5720 TCGA-CG-5721 
       19.07        21.99         8.98        18.94         0.99         5.98 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 
       12.03        15.02        28.96        31.04         4.01        55.04 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6527 
       12.36        12.66        20.55        18.84        18.61        10.26 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-8575 TCGA-D7-8578 TCGA-D7-A4YT TCGA-D7-A4YV 
       12.79        10.55         0.20         5.23         4.24         5.92 
TCGA-D7-A4YY TCGA-EQ-A4SO TCGA-F1-6177 TCGA-F1-6875 TCGA-FP-7998 TCGA-HU-8608 
        3.42         7.96         6.54        72.23         3.58        10.62 
TCGA-HU-A4GY TCGA-HU-A4H2 TCGA-HU-A4HD TCGA-IN-7806 TCGA-IN-7808 TCGA-IN-8663 
        0.26        12.95        27.42         6.87         3.55         3.39 

subtype1 subtype2 subtype3 
    0.07     0.07     0.07 
subtype1 subtype2 subtype3 
   70.06    65.10    72.23 
subtype1 subtype2 subtype3 
   1.320    1.020    3.795 
[1] "0.1 - 70.1 (1.3)" "0.1 - 65.1 (1.0)" "0.1 - 72.2 (3.8)"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
  [7] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [19] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [25] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [31] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [37] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [43] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [61] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [67] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [73] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [79] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [85] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [97] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[103] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[109] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[127] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[133] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[139] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[145] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[163] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[169] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[175] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[181] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[187] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[193] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[199] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[205] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[211] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[217] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[223] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[229] "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
  [7] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [19] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [25] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [31] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [37] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [43] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [61] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [67] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [73] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [79] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [85] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [97] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[103] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[109] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[127] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[133] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[139] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[145] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[163] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[169] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[175] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[181] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[187] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[193] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[199] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[205] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[211] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[217] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[223] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[229] "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
  [7] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [19] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [25] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [31] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [37] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [43] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [61] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [67] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [73] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [79] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [85] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [97] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[103] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[109] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[127] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[133] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[139] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[145] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[163] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[169] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[175] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[181] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[187] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[193] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[199] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[205] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[211] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[217] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[223] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[229] "subtype1"
D3V2, continuous
          vv
clus       STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB STAGE III
  subtype1       0        0        8        4        10        10         1
  subtype2       0        2        3       13        10        14         1
  subtype3       2        4       14       12         5        10         1
          vv
clus       STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  subtype1         15         13          9        6
  subtype2         13         11         11       10
  subtype3         11         11          5        9
D3V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1  0 19 37 22
  subtype2  2 16 37 33
  subtype3  6 31 29 21
D3V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 26 23 14 15
  subtype2 26 29 16 18
  subtype3 35 23 13 14
D3V5, multiclass
          vv
clus       M0 M1 MX
  subtype1 72  4  5
  subtype2 84  6  1
  subtype3 81  6  4
D3V6, multiclass
D3V7, binary
          cls
clus        0  1
  subtype1 33 48
  subtype2 38 53
  subtype3 28 63
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   33   48
  subtype2   38   53
  subtype3   28   63
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       33       38       28
  MALE         48       53       63
          vv
clus       STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  subtype1                                     9
  subtype2                                    18
  subtype3                                    14
          vv
clus       STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                     44
  subtype2                                                     45
  subtype3                                                     46
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                                13
  subtype2                                                                 9
  subtype3                                                                16
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  subtype1                                               11
  subtype2                                                4
  subtype3                                               11
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  subtype1                                                        3
  subtype2                                                       11
  subtype3                                                        1
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  subtype1                                                         0
  subtype2                                                         1
  subtype3                                                         3
          vv
clus       STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  subtype1                                        1
  subtype2                                        1
  subtype3                                        0
D3V8, multiclass
D3V9, binary
          cls
clus        0  1
  subtype1  2 79
  subtype2  0 91
  subtype3  5 86
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2   79
  subtype2    0   91
  subtype3    5   86
     clus
vv    subtype1 subtype2 subtype3
  NO         2        0        5
  YES       79       91       86
          vv
clus       R0 R1 R2 RX
  subtype1 64  3  1 10
  subtype2 72  4  2  7
  subtype3 70  1  5  7
D3V10, multiclass
D3V11, continuous

Clustering(4) Variable = RPPA_CHIERARCHICAL
D4V1, survival
          sevent
clus2       0  1
  subtype1 85  5
  subtype2 41  4
  subtype3 76 18
subtype1 subtype2 subtype3 
      90       45       94 
subtype1 subtype2 subtype3 
       5        4       18 
$subtype1
TCGA-BR-4183 TCGA-BR-4279 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 
        6.61         9.57        11.70         6.97         9.40         0.62 
TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6801 TCGA-BR-6803 TCGA-BR-7196 TCGA-BR-7197 
       13.81         2.17         1.12         0.66         1.22         1.48 
TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7901 TCGA-BR-7957 
        1.05         0.82         0.69         0.16         0.95         0.69 
TCGA-BR-7959 TCGA-BR-8058 TCGA-BR-8059 TCGA-BR-8080 TCGA-BR-8284 TCGA-BR-8289 
        1.08         1.12         0.82         0.49         0.72         0.26 
TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8362 TCGA-BR-8364 TCGA-BR-8365 TCGA-BR-8367 
        1.48         0.76         0.36         2.20         2.96         1.08 
TCGA-BR-8369 TCGA-BR-8370 TCGA-BR-8371 TCGA-BR-8380 TCGA-BR-8384 TCGA-BR-8483 
        0.82         0.56         0.36         0.69         0.69         0.82 
TCGA-BR-8486 TCGA-BR-8590 TCGA-BR-8592 TCGA-BR-8677 TCGA-BR-8679 TCGA-BR-8682 
        0.99         2.14         0.20         0.49         0.16         1.64 
TCGA-BR-8683 TCGA-BR-8686 TCGA-BR-8687 TCGA-BR-A44T TCGA-BR-A452 TCGA-BR-A453 
        0.59         0.56         0.62         0.43         0.66         3.02 
TCGA-BR-A4CQ TCGA-BR-A4CS TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ 
        2.24         0.92         0.59         0.92         0.39         0.79 
TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J7 TCGA-BR-A4J9 TCGA-CD-5798 TCGA-CD-5803 
        0.43         0.13         0.46         0.10         2.83         0.07 
TCGA-CD-5813 TCGA-CD-8524 TCGA-CD-8525 TCGA-CD-8527 TCGA-CD-8529 TCGA-CD-8530 
        0.39         0.07         0.07         0.07         0.13         0.16 
TCGA-CD-A489 TCGA-CD-A48A TCGA-CD-A48C TCGA-CD-A4MI TCGA-CG-4472 TCGA-CG-5717 
        0.13         0.13         0.13         0.10        12.00         6.94 
TCGA-CG-5719 TCGA-CG-5726 TCGA-CG-5727 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6521 
        1.02        28.96        31.04        11.93        19.13        18.54 
TCGA-D7-6524 TCGA-D7-8572 TCGA-D7-8574 TCGA-D7-8578 TCGA-D7-A4YV TCGA-D7-A4Z0 
       17.85         0.85         4.18         5.23         5.92         4.87 
TCGA-FP-7916 TCGA-FP-7998 TCGA-HU-A4GY TCGA-IN-7806 TCGA-IN-8462 TCGA-IN-8663 
        3.02         3.58         0.26         6.87        10.49         3.39 

$subtype2
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4201 TCGA-BR-4267 TCGA-BR-6710 TCGA-BR-6802 
        5.62         0.10        30.90         6.15         0.66         0.76 
TCGA-BR-6852 TCGA-BR-7851 TCGA-BR-7958 TCGA-BR-8060 TCGA-BR-8081 TCGA-BR-8285 
        0.26         0.99         0.16         1.32         0.46         0.26 
TCGA-BR-8291 TCGA-BR-8363 TCGA-BR-8382 TCGA-BR-8588 TCGA-BR-8591 TCGA-BR-8676 
        1.18         0.33         0.43         0.76         0.20         0.89 
TCGA-BR-8690 TCGA-BR-A4PF TCGA-BR-A4QI TCGA-CD-8528 TCGA-CD-A487 TCGA-CG-4300 
        0.59         0.72         0.49         0.10         0.13        20.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4455 TCGA-CG-4477 TCGA-CG-5718 TCGA-CG-5723 
        7.96         8.05        12.03         1.02         1.02        70.06 
TCGA-CG-5728 TCGA-CG-5733 TCGA-D7-6815 TCGA-D7-6820 TCGA-D7-6822 TCGA-D7-8573 
       65.10        21.07        15.98        11.31        12.30         3.88 
TCGA-D7-A4YU TCGA-EQ-8122 TCGA-F1-6874 TCGA-F1-A448 TCGA-HU-8610 TCGA-HU-A4GF 
        6.90         7.79         2.01         8.25         0.76        17.06 
TCGA-HU-A4H3 TCGA-HU-A4H4 TCGA-HU-A4H5 
       19.36        17.69        12.30 

$subtype3
TCGA-BR-4184 TCGA-BR-4280 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6566 TCGA-BR-6707 
        6.94         6.61         8.45        13.12        12.43        11.61 
TCGA-BR-6709 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7723 TCGA-BR-8286 TCGA-BR-8295 
        1.22         0.46         1.25         4.54         0.43         1.55 
TCGA-BR-8360 TCGA-BR-8361 TCGA-BR-8366 TCGA-BR-8368 TCGA-BR-8372 TCGA-BR-8381 
        0.20         0.39         0.56         1.38         0.59         0.26 
TCGA-BR-8484 TCGA-BR-8485 TCGA-BR-8589 TCGA-BR-8678 TCGA-BR-8680 TCGA-BR-A44U 
        0.69         0.30         1.91         0.16         0.79         1.15 
TCGA-BR-A4CR TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J8 TCGA-BR-A4PD 
        1.68         0.72         0.79         0.53         0.23         1.35 
TCGA-BR-A4QL TCGA-BR-A4QM TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 
        2.24         0.56         3.25        13.15        13.18         0.30 
TCGA-CD-8526 TCGA-CD-8531 TCGA-CD-8532 TCGA-CD-8533 TCGA-CD-8535 TCGA-CD-8536 
        0.07         0.10         0.10         0.13         0.13         0.10 
TCGA-CD-A486 TCGA-CD-A4MG TCGA-CD-A4MH TCGA-CD-A4MJ TCGA-CG-4301 TCGA-CG-4304 
        0.07         0.07         0.10         0.10         3.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4438 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       15.95         1.02        54.05        29.98        47.05        19.07 
TCGA-CG-4460 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-5720 TCGA-CG-5721 
       21.99         8.98        18.94         7.07         0.99         5.98 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 
       12.03        15.02         4.01        55.04         7.99        12.36 
TCGA-D7-5578 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6525 TCGA-D7-6527 
       12.66        20.55        18.84        18.61        13.35        10.26 
TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-8570 TCGA-D7-8575 TCGA-D7-A4YT 
       15.22        12.79        10.55         7.99         0.20         4.24 
TCGA-D7-A4YX TCGA-D7-A4YY TCGA-EQ-A4SO TCGA-F1-6177 TCGA-F1-6875 TCGA-HJ-7597 
        8.02         3.42         7.96         6.54        72.23        26.43 
TCGA-HU-8602 TCGA-HU-8608 TCGA-HU-A4GQ TCGA-HU-A4GT TCGA-HU-A4GU TCGA-HU-A4GX 
       11.41        10.62         0.10         6.51         6.25        10.19 
TCGA-HU-A4H2 TCGA-HU-A4HD TCGA-IN-7808 TCGA-IP-7968 
       12.95        27.42         3.55         2.53 

subtype1 subtype2 subtype3 
    0.07     0.10     0.07 
subtype1 subtype2 subtype3 
   31.04    70.06    72.23 
subtype1 subtype2 subtype3 
   0.835    1.320    4.390 
[1] "0.1 - 31.0 (0.8)" "0.1 - 70.1 (1.3)" "0.1 - 72.2 (4.4)"
  [1] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
  [7] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [19] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [37] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [43] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [55] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [61] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [73] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [79] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [85] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [91] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [97] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[103] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[109] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[127] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[133] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[139] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[145] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[157] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[163] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[169] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[175] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[181] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[187] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[193] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[199] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[205] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[211] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[217] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[223] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[229] "subtype3"
  [1] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
  [7] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [19] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [37] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [43] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [55] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [61] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [73] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [79] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [85] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [91] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [97] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[103] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[109] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[127] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[133] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[139] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[145] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[157] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[163] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[169] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[175] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[181] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[187] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[193] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[199] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[205] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[211] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[217] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[223] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[229] "subtype3"
  [1] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
  [7] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [19] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [37] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [43] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [55] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [61] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [73] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [79] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [85] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [91] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [97] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[103] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[109] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[127] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[133] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[139] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[145] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[157] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[163] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[169] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[175] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[181] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[187] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[193] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[199] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[205] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[211] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[217] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[223] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[229] "subtype3"
D4V2, continuous
          vv
clus       STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB STAGE III
  subtype1       0        2        2       12        11        16         1
  subtype2       0        1        9        5         5         9         0
  subtype3       2        3       14       12         9         9         2
          vv
clus       STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  subtype1         15         13         14       11
  subtype2          6          7          5        0
  subtype3         18         15          6       14
D4V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1  2 14 42 39
  subtype2  1 19 16 12
  subtype3  5 33 45 25
D4V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 26 35 19 19
  subtype2 22 10  6  9
  subtype3 39 30 18 19
D4V5, multiclass
          vv
clus       M0 M1 MX
  subtype1 92  7  2
  subtype2 48  0  1
  subtype3 97  9  7
D4V6, multiclass
D4V7, binary
          cls
clus        0  1
  subtype1 37 64
  subtype2 21 28
  subtype3 41 72
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   37   64
  subtype2   21   28
  subtype3   41   72
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       37       21       41
  MALE         64       28       72
          vv
clus       STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  subtype1                                    19
  subtype2                                     6
  subtype3                                    16
          vv
clus       STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                     54
  subtype2                                                     21
  subtype3                                                     60
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                                11
  subtype2                                                                11
  subtype3                                                                16
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  subtype1                                                4
  subtype2                                                8
  subtype3                                               14
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  subtype1                                                       10
  subtype2                                                        2
  subtype3                                                        3
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  subtype1                                                         0
  subtype2                                                         1
  subtype3                                                         3
          vv
clus       STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  subtype1                                        1
  subtype2                                        0
  subtype3                                        1
D4V8, multiclass
D4V9, binary
          cls
clus         0   1
  subtype1   0 101
  subtype2   0  49
  subtype3   7 106
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0  101
  subtype2    0   49
  subtype3    7  106
     clus
vv    subtype1 subtype2 subtype3
  NO         0        0        7
  YES      101       49      106
          vv
clus       R0 R1 R2 RX
  subtype1 80  4  1  8
  subtype2 44  0  0  3
  subtype3 82  4  7 13
D4V10, multiclass
D4V11, continuous

Clustering(5) Variable = MRNASEQ_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1 50  6
  subtype2 54  3
  subtype3 30  5
  subtype4 31  6
  subtype5 49  5
subtype1 subtype2 subtype3 subtype4 subtype5 
      56       57       35       37       54 
subtype1 subtype2 subtype3 subtype4 subtype5 
       6        3        5        6        5 
$subtype1
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4201 TCGA-BR-6452 TCGA-BR-6802 TCGA-BR-6852 
        5.62         0.10        30.90         8.45         0.76         0.26 
TCGA-BR-7707 TCGA-BR-7958 TCGA-BR-8078 TCGA-BR-8081 TCGA-BR-8286 TCGA-BR-8361 
        0.13         0.16         0.95         0.46         0.43         0.39 
TCGA-BR-8363 TCGA-BR-8366 TCGA-BR-8372 TCGA-BR-8381 TCGA-BR-8382 TCGA-BR-8487 
        0.33         0.56         0.59         0.26         0.43         0.69 
TCGA-BR-8589 TCGA-BR-8591 TCGA-BR-8680 TCGA-BR-A4IY TCGA-BR-A4J4 TCGA-CD-5801 
        1.91         0.20         0.79         0.39         0.53        13.18 
TCGA-CD-8528 TCGA-CD-8531 TCGA-CD-8536 TCGA-CD-A48C TCGA-CD-A4MJ TCGA-CG-4305 
        0.10         0.10         0.10         0.13         0.10        15.95 
TCGA-CG-4477 TCGA-CG-5717 TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5724 TCGA-D7-5577 
        1.02         6.94         5.98        70.06        12.03        12.36 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-8570 TCGA-D7-8573 TCGA-D7-A4YX TCGA-D7-A4YY 
       17.85        13.35         7.99         3.88         8.02         3.42 
TCGA-FP-8099 TCGA-FP-A4BE TCGA-HU-8602 TCGA-HU-8604 TCGA-HU-8608 TCGA-HU-8610 
        1.02         0.99        11.41        12.10        10.62         0.76 
TCGA-HU-A4G6 TCGA-HU-A4G8 TCGA-HU-A4GN TCGA-HU-A4H0 TCGA-HU-A4H3 TCGA-HU-A4H4 
       12.30        11.84        21.04         2.10        19.36        17.69 
TCGA-IN-8462 TCGA-IN-8663 
       10.49         3.39 

$subtype2
TCGA-BR-4279 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6705 
        9.57        13.12        11.70        10.85         9.40        13.81 
TCGA-BR-6706 TCGA-BR-6801 TCGA-BR-6803 TCGA-BR-7196 TCGA-BR-7957 TCGA-BR-7959 
        2.17         1.12         0.66         1.22         0.69         1.08 
TCGA-BR-8059 TCGA-BR-8080 TCGA-BR-8284 TCGA-BR-8291 TCGA-BR-8297 TCGA-BR-8362 
        0.82         0.49         0.72         1.18         0.76         0.36 
TCGA-BR-8364 TCGA-BR-8365 TCGA-BR-8367 TCGA-BR-8369 TCGA-BR-8371 TCGA-BR-8380 
        2.20         2.96         1.08         0.82         0.36         0.69 
TCGA-BR-8384 TCGA-BR-8590 TCGA-BR-8592 TCGA-BR-8677 TCGA-BR-8682 TCGA-BR-8686 
        0.69         2.14         0.20         0.49         1.64         0.56 
TCGA-BR-A44T TCGA-BR-A453 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J2 
        0.43         3.02         0.59         0.92         0.79         0.79 
TCGA-BR-A4J5 TCGA-BR-A4J7 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-CD-5798 TCGA-CD-5803 
        0.43         0.46         0.23         0.10         2.83         0.07 
TCGA-CD-5813 TCGA-CD-A487 TCGA-CD-A489 TCGA-CD-A4MI TCGA-CG-4472 TCGA-D7-6518 
        0.39         0.13         0.13         0.10        12.00        19.13 
TCGA-D7-8574 TCGA-D7-8579 TCGA-D7-A4YU TCGA-D7-A4YV TCGA-FP-7916 TCGA-FP-7998 
        4.18         4.77         6.90         5.92         3.02         3.58 
TCGA-FP-8209 TCGA-FP-8210 TCGA-HU-A4GY 
       59.05         5.03         0.26 

$subtype3
TCGA-BR-4267 TCGA-BR-6707 TCGA-BR-6710 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-8058 
        6.15        11.61         0.66         0.69         0.16         1.12 
TCGA-BR-8484 TCGA-BR-A4J6 TCGA-BR-A4PD TCGA-CD-8529 TCGA-CD-8532 TCGA-CG-4301 
        0.69         0.13         1.35         0.13         0.10         3.02 
TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-5719 TCGA-CG-5722 TCGA-CG-5726 TCGA-CG-5732 
        1.02         8.05         1.02         0.95        28.96        55.04 
TCGA-CG-5734 TCGA-D7-6521 TCGA-D7-6527 TCGA-D7-6817 TCGA-D7-8575 TCGA-D7-8576 
        7.99        18.54        10.26        12.79         0.20         3.19 
TCGA-FP-8211 TCGA-HU-A4G2 TCGA-HU-A4G3 TCGA-HU-A4G9 TCGA-HU-A4GC TCGA-HU-A4GJ 
        2.83        15.19         5.59        15.22         3.25        21.37 
TCGA-HU-A4GP TCGA-HU-A4GX TCGA-HU-A4H2 TCGA-HU-A4H6 TCGA-HU-A4HB 
        8.98        10.19        12.95         9.63         8.81 

$subtype4
TCGA-BR-4280 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-7703 TCGA-BR-7851 TCGA-BR-8368 
        6.61         0.62        12.43         0.46         0.99         1.38 
TCGA-BR-8486 TCGA-BR-8588 TCGA-BR-8679 TCGA-BR-8683 TCGA-BR-A4PF TCGA-BR-A4QI 
        0.99         0.76         0.16         0.59         0.72         0.49 
TCGA-CD-5799 TCGA-CD-A4MG TCGA-CG-4304 TCGA-CG-4436 TCGA-CG-4441 TCGA-CG-4444 
        3.25         0.07        27.02         7.96        14.01        47.05 
TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-5720 TCGA-D7-5578 TCGA-D7-6522 TCGA-D7-6528 
        8.98         7.07         0.99        12.66        18.61        15.22 
TCGA-D7-6815 TCGA-D7-A4Z0 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-A448 TCGA-FP-7829 
       15.98         4.87         6.54         2.01         8.25         0.20 
TCGA-HU-8238 TCGA-HU-8244 TCGA-HU-A4GF TCGA-HU-A4GT TCGA-HU-A4GU TCGA-HU-A4H8 
        1.51        14.27        17.06         6.51         6.25         8.88 
TCGA-IN-7806 
        6.87 

$subtype5
TCGA-BR-6458 TCGA-BR-6709 TCGA-BR-7197 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7723 
        6.97         1.22         1.48         1.05         0.82         4.54 
TCGA-BR-7901 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8289 TCGA-BR-8373 TCGA-BR-8483 
        0.95         1.32         0.69         0.26         0.85         0.82 
TCGA-BR-8485 TCGA-BR-8678 TCGA-BR-8687 TCGA-BR-A452 TCGA-BR-A4CR TCGA-BR-A4CS 
        0.30         0.16         0.62         0.66         1.68         0.92 
TCGA-BR-A4J1 TCGA-CD-5800 TCGA-CD-8524 TCGA-CD-8526 TCGA-CD-8530 TCGA-CD-8533 
        0.72        13.15         0.07         0.07         0.16         0.13 
TCGA-CD-8535 TCGA-CD-A486 TCGA-CD-A4MH TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4443 
        0.13         0.07         0.10        54.05         4.01        29.98 
TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4466 TCGA-CG-5718 TCGA-CG-5725 TCGA-D7-6519 
       19.07        21.99        18.94         1.02        15.02        20.55 
TCGA-D7-6520 TCGA-D7-6526 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-D7-8572 
       18.84        17.19        10.55        11.31        12.30         0.85 
TCGA-D7-8578 TCGA-D7-A4YT TCGA-EQ-8122 TCGA-EQ-A4SO TCGA-F1-6875 TCGA-FP-7735 
        5.23         4.24         7.79         7.96        72.23         0.39 
TCGA-FP-8631 TCGA-HU-A4GH TCGA-HU-A4H5 TCGA-HU-A4HD TCGA-IN-7808 TCGA-IP-7968 
        0.56        11.77        12.30        27.42         3.55         2.53 

subtype1 subtype2 subtype3 subtype4 subtype5 
    0.10     0.07     0.10     0.07     0.07 
subtype1 subtype2 subtype3 subtype4 subtype5 
   70.06    59.05    55.04    47.05    72.23 
subtype1 subtype2 subtype3 subtype4 subtype5 
   1.465    0.920    5.590    6.510    1.580 
[1] "0.1 - 70.1 (1.5)" "0.1 - 59.0 (0.9)" "0.1 - 55.0 (5.6)" "0.1 - 47.0 (6.5)"
[5] "0.1 - 72.2 (1.6)"
  [1] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype4"
  [7] "subtype1" "subtype2" "subtype2" "subtype5" "subtype2" "subtype2"
 [13] "subtype4" "subtype4" "subtype2" "subtype2" "subtype3" "subtype5"
 [19] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [25] "subtype5" "subtype4" "subtype1" "subtype5" "subtype5" "subtype3"
 [31] "subtype3" "subtype5" "subtype4" "subtype5" "subtype2" "subtype1"
 [37] "subtype2" "subtype3" "subtype2" "subtype5" "subtype5" "subtype1"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype5" "subtype2"
 [49] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [55] "subtype1" "subtype2" "subtype4" "subtype2" "subtype2" "subtype1"
 [61] "subtype5" "subtype2" "subtype1" "subtype1" "subtype2" "subtype5"
 [67] "subtype3" "subtype5" "subtype4" "subtype1" "subtype4" "subtype1"
 [73] "subtype2" "subtype1" "subtype2" "subtype2" "subtype5" "subtype4"
 [79] "subtype1" "subtype2" "subtype4" "subtype2" "subtype5" "subtype2"
 [85] "subtype5" "subtype2" "subtype5" "subtype5" "subtype2" "subtype2"
 [91] "subtype1" "subtype2" "subtype5" "subtype2" "subtype1" "subtype2"
 [97] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype4"
[103] "subtype4" "subtype2" "subtype4" "subtype5" "subtype1" "subtype2"
[109] "subtype2" "subtype5" "subtype5" "subtype1" "subtype3" "subtype5"
[115] "subtype1" "subtype3" "subtype5" "subtype5" "subtype1" "subtype5"
[121] "subtype2" "subtype2" "subtype1" "subtype4" "subtype5" "subtype2"
[127] "subtype1" "subtype3" "subtype4" "subtype1" "subtype3" "subtype4"
[133] "subtype3" "subtype5" "subtype5" "subtype4" "subtype5" "subtype4"
[139] "subtype5" "subtype5" "subtype4" "subtype5" "subtype4" "subtype2"
[145] "subtype1" "subtype1" "subtype5" "subtype3" "subtype4" "subtype1"
[151] "subtype3" "subtype1" "subtype1" "subtype5" "subtype3" "subtype3"
[157] "subtype3" "subtype1" "subtype4" "subtype2" "subtype5" "subtype5"
[163] "subtype3" "subtype4" "subtype1" "subtype1" "subtype5" "subtype3"
[169] "subtype4" "subtype4" "subtype3" "subtype5" "subtype5" "subtype5"
[175] "subtype1" "subtype5" "subtype1" "subtype2" "subtype3" "subtype3"
[181] "subtype5" "subtype2" "subtype5" "subtype2" "subtype2" "subtype1"
[187] "subtype1" "subtype4" "subtype5" "subtype5" "subtype4" "subtype4"
[193] "subtype5" "subtype4" "subtype5" "subtype4" "subtype2" "subtype2"
[199] "subtype1" "subtype2" "subtype2" "subtype3" "subtype5" "subtype1"
[205] "subtype4" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
[211] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[217] "subtype4" "subtype5" "subtype3" "subtype1" "subtype3" "subtype4"
[223] "subtype4" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[229] "subtype1" "subtype5" "subtype3" "subtype4" "subtype3" "subtype5"
[235] "subtype4" "subtype5" "subtype1" "subtype1" "subtype5"
  [1] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype4"
  [7] "subtype1" "subtype2" "subtype2" "subtype5" "subtype2" "subtype2"
 [13] "subtype4" "subtype4" "subtype2" "subtype2" "subtype3" "subtype5"
 [19] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [25] "subtype5" "subtype4" "subtype1" "subtype5" "subtype5" "subtype3"
 [31] "subtype3" "subtype5" "subtype4" "subtype5" "subtype2" "subtype1"
 [37] "subtype2" "subtype3" "subtype2" "subtype5" "subtype5" "subtype1"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype5" "subtype2"
 [49] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [55] "subtype1" "subtype2" "subtype4" "subtype2" "subtype2" "subtype1"
 [61] "subtype5" "subtype2" "subtype1" "subtype1" "subtype2" "subtype5"
 [67] "subtype3" "subtype5" "subtype4" "subtype1" "subtype4" "subtype1"
 [73] "subtype2" "subtype1" "subtype2" "subtype2" "subtype5" "subtype4"
 [79] "subtype1" "subtype2" "subtype4" "subtype2" "subtype5" "subtype2"
 [85] "subtype5" "subtype2" "subtype5" "subtype5" "subtype2" "subtype2"
 [91] "subtype1" "subtype2" "subtype5" "subtype2" "subtype1" "subtype2"
 [97] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype4"
[103] "subtype4" "subtype2" "subtype4" "subtype5" "subtype1" "subtype2"
[109] "subtype2" "subtype5" "subtype5" "subtype1" "subtype3" "subtype5"
[115] "subtype1" "subtype3" "subtype5" "subtype5" "subtype1" "subtype5"
[121] "subtype2" "subtype2" "subtype1" "subtype4" "subtype5" "subtype2"
[127] "subtype1" "subtype3" "subtype4" "subtype1" "subtype3" "subtype4"
[133] "subtype3" "subtype5" "subtype5" "subtype4" "subtype5" "subtype4"
[139] "subtype5" "subtype5" "subtype4" "subtype5" "subtype4" "subtype2"
[145] "subtype1" "subtype1" "subtype5" "subtype3" "subtype4" "subtype1"
[151] "subtype3" "subtype1" "subtype1" "subtype5" "subtype3" "subtype3"
[157] "subtype3" "subtype1" "subtype4" "subtype2" "subtype5" "subtype5"
[163] "subtype3" "subtype4" "subtype1" "subtype1" "subtype5" "subtype3"
[169] "subtype4" "subtype4" "subtype3" "subtype5" "subtype5" "subtype5"
[175] "subtype1" "subtype5" "subtype1" "subtype2" "subtype3" "subtype3"
[181] "subtype5" "subtype2" "subtype5" "subtype2" "subtype2" "subtype1"
[187] "subtype1" "subtype4" "subtype5" "subtype5" "subtype4" "subtype4"
[193] "subtype5" "subtype4" "subtype5" "subtype4" "subtype2" "subtype2"
[199] "subtype1" "subtype2" "subtype2" "subtype3" "subtype5" "subtype1"
[205] "subtype4" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
[211] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[217] "subtype4" "subtype5" "subtype3" "subtype1" "subtype3" "subtype4"
[223] "subtype4" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[229] "subtype1" "subtype5" "subtype3" "subtype4" "subtype3" "subtype5"
[235] "subtype4" "subtype5" "subtype1" "subtype1" "subtype5"
  [1] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype4"
  [7] "subtype1" "subtype2" "subtype2" "subtype5" "subtype2" "subtype2"
 [13] "subtype4" "subtype4" "subtype2" "subtype2" "subtype3" "subtype5"
 [19] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [25] "subtype5" "subtype4" "subtype1" "subtype5" "subtype5" "subtype3"
 [31] "subtype3" "subtype5" "subtype4" "subtype5" "subtype2" "subtype1"
 [37] "subtype2" "subtype3" "subtype2" "subtype5" "subtype5" "subtype1"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype5" "subtype2"
 [49] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [55] "subtype1" "subtype2" "subtype4" "subtype2" "subtype2" "subtype1"
 [61] "subtype5" "subtype2" "subtype1" "subtype1" "subtype2" "subtype5"
 [67] "subtype3" "subtype5" "subtype4" "subtype1" "subtype4" "subtype1"
 [73] "subtype2" "subtype1" "subtype2" "subtype2" "subtype5" "subtype4"
 [79] "subtype1" "subtype2" "subtype4" "subtype2" "subtype5" "subtype2"
 [85] "subtype5" "subtype2" "subtype5" "subtype5" "subtype2" "subtype2"
 [91] "subtype1" "subtype2" "subtype5" "subtype2" "subtype1" "subtype2"
 [97] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype4"
[103] "subtype4" "subtype2" "subtype4" "subtype5" "subtype1" "subtype2"
[109] "subtype2" "subtype5" "subtype5" "subtype1" "subtype3" "subtype5"
[115] "subtype1" "subtype3" "subtype5" "subtype5" "subtype1" "subtype5"
[121] "subtype2" "subtype2" "subtype1" "subtype4" "subtype5" "subtype2"
[127] "subtype1" "subtype3" "subtype4" "subtype1" "subtype3" "subtype4"
[133] "subtype3" "subtype5" "subtype5" "subtype4" "subtype5" "subtype4"
[139] "subtype5" "subtype5" "subtype4" "subtype5" "subtype4" "subtype2"
[145] "subtype1" "subtype1" "subtype5" "subtype3" "subtype4" "subtype1"
[151] "subtype3" "subtype1" "subtype1" "subtype5" "subtype3" "subtype3"
[157] "subtype3" "subtype1" "subtype4" "subtype2" "subtype5" "subtype5"
[163] "subtype3" "subtype4" "subtype1" "subtype1" "subtype5" "subtype3"
[169] "subtype4" "subtype4" "subtype3" "subtype5" "subtype5" "subtype5"
[175] "subtype1" "subtype5" "subtype1" "subtype2" "subtype3" "subtype3"
[181] "subtype5" "subtype2" "subtype5" "subtype2" "subtype2" "subtype1"
[187] "subtype1" "subtype4" "subtype5" "subtype5" "subtype4" "subtype4"
[193] "subtype5" "subtype4" "subtype5" "subtype4" "subtype2" "subtype2"
[199] "subtype1" "subtype2" "subtype2" "subtype3" "subtype5" "subtype1"
[205] "subtype4" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
[211] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[217] "subtype4" "subtype5" "subtype3" "subtype1" "subtype3" "subtype4"
[223] "subtype4" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[229] "subtype1" "subtype5" "subtype3" "subtype4" "subtype3" "subtype5"
[235] "subtype4" "subtype5" "subtype1" "subtype1" "subtype5"
D5V2, continuous
          vv
clus       STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB STAGE III
  subtype1       0        3        5        6         9        11         0
  subtype2       0        0        1        6         6        10         1
  subtype3       0        2        3        4         3         6         0
  subtype4       2        3        9        1         7         5         1
  subtype5       0        3        8        7         4         8         1
          vv
clus       STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  subtype1          8          6          7        3
  subtype2          9         12         10        6
  subtype3          6          4          3       10
  subtype4          7          3          0        3
  subtype5         11          6          5        5
D5V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1  2 17 21 19
  subtype2  0  5 31 25
  subtype3  3 13 14 12
  subtype4  6 16 12  8
  subtype5  2 18 28 12
D5V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 25 18  7 10
  subtype2 14 20 10 17
  subtype3 11 12 11  8
  subtype4 21  9  8  3
  subtype5 20 19 11  8
D5V5, multiclass
          vv
clus       M0 M1 MX
  subtype1 59  2  1
  subtype2 59  3  2
  subtype3 34  7  2
  subtype4 39  2  1
  subtype5 52  4  6
D5V6, multiclass
D5V7, binary
          cls
clus        0  1
  subtype1 26 36
  subtype2 25 39
  subtype3 17 26
  subtype4 16 26
  subtype5 20 42
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   26   36
  subtype2   25   39
  subtype3   17   26
  subtype4   16   26
  subtype5   20   42
          vv
clus       STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  subtype1                                    11
  subtype2                                    20
  subtype3                                     9
  subtype4                                     7
  subtype5                                     4
          vv
clus       STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                     38
  subtype2                                                     28
  subtype3                                                     17
  subtype4                                                     16
  subtype5                                                     31
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                                 4
  subtype2                                                                 4
  subtype3                                                                 6
  subtype4                                                                 7
  subtype5                                                                14
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  subtype1                                                8
  subtype2                                                3
  subtype3                                                7
  subtype4                                                9
  subtype5                                                9
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  subtype1                                                        0
  subtype2                                                        7
  subtype3                                                        3
  subtype4                                                        2
  subtype5                                                        1
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  subtype1                                                         1
  subtype2                                                         0
  subtype3                                                         1
  subtype4                                                         1
  subtype5                                                         2
          vv
clus       STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  subtype1                                        0
  subtype2                                        1
  subtype3                                        0
  subtype4                                        0
  subtype5                                        0
D5V8, multiclass
D5V9, binary
          cls
clus        0  1
  subtype1  0 62
  subtype2  0 64
  subtype3  5 38
  subtype4  0 42
  subtype5  2 60
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0   62
  subtype2    0   64
  subtype3    5   38
  subtype4    0   42
  subtype5    2   60
          vv
clus       R0 R1 R2 RX
  subtype1 52  1  1  5
  subtype2 48  2  0  6
  subtype3 33  2  5  3
  subtype4 34  1  2  3
  subtype5 50  2  2  4
D5V10, multiclass
D5V11, continuous

Clustering(6) Variable = MRNASEQ_CHIERARCHICAL
D6V1, survival
          sevent
clus2        0   1
  subtype1  54   4
  subtype2 111  13
  subtype3  49   8
subtype1 subtype2 subtype3 
      58      124       57 
subtype1 subtype2 subtype3 
       4       13        8 
$subtype1
TCGA-BR-4201 TCGA-BR-4279 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 
       30.90         9.57        11.70        10.85         9.40         0.62 
TCGA-BR-6705 TCGA-BR-6801 TCGA-BR-6803 TCGA-BR-7957 TCGA-BR-7959 TCGA-BR-8059 
       13.81         1.12         0.66         0.69         1.08         0.82 
TCGA-BR-8080 TCGA-BR-8284 TCGA-BR-8291 TCGA-BR-8297 TCGA-BR-8362 TCGA-BR-8364 
        0.49         0.72         1.18         0.76         0.36         2.20 
TCGA-BR-8365 TCGA-BR-8367 TCGA-BR-8369 TCGA-BR-8371 TCGA-BR-8380 TCGA-BR-8384 
        2.96         1.08         0.82         0.36         0.69         0.69 
TCGA-BR-8588 TCGA-BR-8590 TCGA-BR-8592 TCGA-BR-8677 TCGA-BR-8679 TCGA-BR-8682 
        0.76         2.14         0.20         0.49         0.16         1.64 
TCGA-BR-8683 TCGA-BR-A44T TCGA-BR-A453 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ 
        0.59         0.43         3.02         0.59         0.92         0.79 
TCGA-BR-A4J2 TCGA-BR-A4J5 TCGA-BR-A4J7 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4QI 
        0.79         0.43         0.46         0.23         0.10         0.49 
TCGA-CD-5798 TCGA-CD-5803 TCGA-CD-5813 TCGA-CD-A489 TCGA-CD-A4MI TCGA-CG-4472 
        2.83         0.07         0.39         0.13         0.10        12.00 
TCGA-CG-5719 TCGA-D7-6518 TCGA-D7-6522 TCGA-D7-8574 TCGA-D7-8579 TCGA-D7-A4YU 
        1.02        19.13        18.61         4.18         4.77         6.90 
TCGA-D7-A4YV TCGA-FP-8209 TCGA-FP-8210 TCGA-HU-A4GY 
        5.92        59.05         5.03         0.26 

$subtype2
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4267 TCGA-BR-4280 TCGA-BR-6452 TCGA-BR-6455 
        5.62         0.10         6.15         6.61         8.45        13.12 
TCGA-BR-6566 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 TCGA-BR-6802 TCGA-BR-6852 
       12.43         2.17        11.61         0.66         0.76         0.26 
TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7958 
        1.22         0.46         0.13         0.16         0.99         0.16 
TCGA-BR-8058 TCGA-BR-8078 TCGA-BR-8081 TCGA-BR-8286 TCGA-BR-8361 TCGA-BR-8363 
        1.12         0.95         0.46         0.43         0.39         0.33 
TCGA-BR-8366 TCGA-BR-8368 TCGA-BR-8372 TCGA-BR-8381 TCGA-BR-8382 TCGA-BR-8484 
        0.56         1.38         0.59         0.26         0.43         0.69 
TCGA-BR-8486 TCGA-BR-8487 TCGA-BR-8589 TCGA-BR-8591 TCGA-BR-8680 TCGA-BR-8686 
        0.99         0.69         1.91         0.20         0.79         0.56 
TCGA-BR-8687 TCGA-BR-A4J4 TCGA-BR-A4J6 TCGA-BR-A4PD TCGA-BR-A4PF TCGA-CD-5799 
        0.62         0.53         0.13         1.35         0.72         3.25 
TCGA-CD-5801 TCGA-CD-8528 TCGA-CD-8529 TCGA-CD-8532 TCGA-CD-8536 TCGA-CD-A4MG 
       13.18         0.10         0.13         0.10         0.10         0.07 
TCGA-CD-A4MJ TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
        0.10         3.02        27.02        15.95         1.02         7.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4441 TCGA-CG-4444 TCGA-CG-4460 TCGA-CG-4465 
        8.05        54.05        14.01        47.05        21.99         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-5718 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5726 
       18.94         7.07         1.02         0.99         0.95        28.96 
TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6521 TCGA-D7-6524 
       55.04         7.99        12.36        12.66        18.54        17.85 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6820 TCGA-D7-8570 
       10.26        15.22        15.98        12.79        11.31         7.99 
TCGA-D7-8573 TCGA-D7-8575 TCGA-D7-8576 TCGA-D7-8578 TCGA-D7-A4YX TCGA-D7-A4YY 
        3.88         0.20         3.19         5.23         8.02         3.42 
TCGA-D7-A4Z0 TCGA-EQ-A4SO TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-A448 TCGA-FP-7735 
        4.87         7.96         6.54         2.01         8.25         0.39 
TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8211 TCGA-FP-8631 
        0.20         3.02         3.58         1.02         2.83         0.56 
TCGA-FP-A4BE TCGA-HU-8238 TCGA-HU-8244 TCGA-HU-8602 TCGA-HU-8604 TCGA-HU-8608 
        0.99         1.51        14.27        11.41        12.10        10.62 
TCGA-HU-8610 TCGA-HU-A4G2 TCGA-HU-A4G3 TCGA-HU-A4G6 TCGA-HU-A4G8 TCGA-HU-A4G9 
        0.76        15.19         5.59        12.30        11.84        15.22 
TCGA-HU-A4GC TCGA-HU-A4GF TCGA-HU-A4GH TCGA-HU-A4GJ TCGA-HU-A4GN TCGA-HU-A4GP 
        3.25        17.06        11.77        21.37        21.04         8.98 
TCGA-HU-A4GT TCGA-HU-A4GU TCGA-HU-A4GX TCGA-HU-A4H0 TCGA-HU-A4H2 TCGA-HU-A4H3 
        6.51         6.25        10.19         2.10        12.95        19.36 
TCGA-HU-A4H4 TCGA-HU-A4H6 TCGA-HU-A4H8 TCGA-HU-A4HB 
       17.69         9.63         8.88         8.81 

$subtype3
TCGA-BR-6458 TCGA-BR-6709 TCGA-BR-7197 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 
        6.97         1.22         1.48         1.05         0.82         0.69 
TCGA-BR-7723 TCGA-BR-7901 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8289 TCGA-BR-8373 
        4.54         0.95         1.32         0.69         0.26         0.85 
TCGA-BR-8483 TCGA-BR-8485 TCGA-BR-8678 TCGA-BR-A452 TCGA-BR-A4CR TCGA-BR-A4CS 
        0.82         0.30         0.16         0.66         1.68         0.92 
TCGA-BR-A4IY TCGA-BR-A4J1 TCGA-CD-5800 TCGA-CD-8524 TCGA-CD-8526 TCGA-CD-8530 
        0.39         0.72        13.15         0.07         0.07         0.16 
TCGA-CD-8531 TCGA-CD-8533 TCGA-CD-8535 TCGA-CD-A486 TCGA-CD-A487 TCGA-CD-A48C 
        0.10         0.13         0.13         0.07         0.13         0.13 
TCGA-CD-A4MH TCGA-CG-4440 TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4477 TCGA-CG-5717 
        0.10         4.01        29.98        19.07         1.02         6.94 
TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-D7-6519 TCGA-D7-6520 
        5.98        70.06        12.03        15.02        20.55        18.84 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6818 TCGA-D7-6822 TCGA-D7-8572 TCGA-D7-A4YT 
       13.35        17.19        10.55        12.30         0.85         4.24 
TCGA-EQ-8122 TCGA-F1-6875 TCGA-HU-A4H5 TCGA-HU-A4HD TCGA-IN-7806 TCGA-IN-7808 
        7.79        72.23        12.30        27.42         6.87         3.55 
TCGA-IN-8462 TCGA-IN-8663 TCGA-IP-7968 
       10.49         3.39         2.53 

subtype1 subtype2 subtype3 
    0.07     0.07     0.07 
subtype1 subtype2 subtype3 
   59.05    55.04    72.23 
subtype1 subtype2 subtype3 
   0.805    3.730    1.480 
[1] "0.1 - 59.0 (0.8)" "0.1 - 55.0 (3.7)" "0.1 - 72.2 (1.5)"
  [1] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [13] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [19] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [25] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [31] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
 [43] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [49] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [61] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [67] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [73] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [79] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [85] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [91] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [97] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[103] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[109] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[115] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[121] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[139] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[145] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[151] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[163] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[169] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[175] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[181] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[187] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[193] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[199] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[205] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[217] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[223] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[229] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[235] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
  [1] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [13] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [19] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [25] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [31] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
 [43] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [49] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [61] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [67] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [73] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [79] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [85] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [91] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [97] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[103] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[109] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[115] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[121] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[139] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[145] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[151] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[163] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[169] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[175] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[181] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[187] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[193] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[199] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[205] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[217] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[223] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[229] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[235] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
  [1] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [13] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [19] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [25] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [31] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
 [43] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [49] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [61] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [67] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [73] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [79] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [85] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [91] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [97] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[103] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[109] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[115] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[121] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[139] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[145] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[151] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[163] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[169] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[175] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[181] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[187] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[193] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[199] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[205] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[217] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[223] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[229] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[235] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
D6V2, continuous
          vv
clus       STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB STAGE III
  subtype1       0        0        3        7         8        10         1
  subtype2       2        9       17        9        18        18         1
  subtype3       0        2        6        8         3        12         1
          vv
clus       STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  subtype1          8         12          8        6
  subtype2         20         14         13       15
  subtype3         13          5          4        6
D6V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1  0 10 28 26
  subtype2 12 40 47 39
  subtype3  1 19 31 11
D6V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 20 18 10 15
  subtype2 54 36 27 22
  subtype3 17 24 10  9
D6V5, multiclass
          vv
clus        M0  M1  MX
  subtype1  64   3   0
  subtype2 122  11   9
  subtype3  57   4   3
D6V6, multiclass
D6V7, binary
          cls
clus        0  1
  subtype1 30 37
  subtype2 55 87
  subtype3 19 45
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   30   37
  subtype2   55   87
  subtype3   19   45
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       30       55       19
  MALE         37       87       45
          vv
clus       STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  subtype1                                    18
  subtype2                                    24
  subtype3                                     9
          vv
clus       STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                     31
  subtype2                                                     66
  subtype3                                                     33
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                                 5
  subtype2                                                                19
  subtype3                                                                11
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  subtype1                                                3
  subtype2                                               26
  subtype3                                                7
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  subtype1                                                        8
  subtype2                                                        4
  subtype3                                                        1
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  subtype1                                                         0
  subtype2                                                         3
  subtype3                                                         2
          vv
clus       STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  subtype1                                        1
  subtype2                                        0
  subtype3                                        0
D6V8, multiclass
D6V9, binary
          cls
clus         0   1
  subtype1   1  66
  subtype2   4 138
  subtype3   2  62
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1   66
  subtype2    4  138
  subtype3    2   62
     clus
vv    subtype1 subtype2 subtype3
  NO         1        4        2
  YES       66      138       62
          vv
clus        R0  R1  R2  RX
  subtype1  52   2   0   7
  subtype2 115   4   8  10
  subtype3  50   2   2   4
D6V10, multiclass
D6V11, continuous

Clustering(7) Variable = MIRSEQ_CNMF
D7V1, survival
          sevent
clus2        0   1
  subtype1  63  20
  subtype2  76   6
  subtype3 100   7
subtype1 subtype2 subtype3 
      83       82      107 
subtype1 subtype2 subtype3 
      20        6        7 
$subtype1
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4184 TCGA-BR-4201 TCGA-BR-4267 
        5.62         0.10         6.61         6.94        30.90         6.15 
TCGA-BR-4280 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6458 TCGA-BR-6566 TCGA-BR-6707 
        6.61         8.45        13.12         6.97        12.43        11.61 
TCGA-BR-6709 TCGA-BR-6802 TCGA-BR-6852 TCGA-BR-8081 TCGA-BR-8285 TCGA-BR-8286 
        1.22         0.76         0.26         0.46         0.26         0.43 
TCGA-BR-8291 TCGA-BR-8296 TCGA-BR-8360 TCGA-BR-8361 TCGA-BR-8363 TCGA-BR-8366 
        1.18         1.48         0.20         0.39         0.33         0.56 
TCGA-BR-8372 TCGA-BR-8589 TCGA-BR-A4QL TCGA-BR-A4QM TCGA-CD-5799 TCGA-CD-5801 
        0.59         1.91         2.24         0.56         3.25        13.18 
TCGA-CD-5802 TCGA-CD-5813 TCGA-CD-A4MG TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 
        0.30         0.39         0.07        20.02         3.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4440 TCGA-CG-4441 
       15.95         1.02         7.96         8.05         4.01        14.01 
TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4455 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4477 
       29.98        47.05        12.03         8.98         7.07         1.02 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 
       12.03        28.96        31.04         4.01        21.07         7.99 
TCGA-D7-5577 TCGA-D7-6519 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6528 TCGA-D7-6815 
       12.36        20.55        17.85        13.35        15.22        15.98 
TCGA-D7-6817 TCGA-D7-A4YX TCGA-D7-A4YY TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-A448 
       12.79         8.02         3.42         6.54         2.01         8.25 
TCGA-FP-8211 TCGA-FP-A4BE TCGA-HU-8238 TCGA-HU-8244 TCGA-HU-A4G3 TCGA-HU-A4GN 
        2.83         0.99         1.51        14.27         5.59        21.04 
TCGA-HU-A4GU TCGA-HU-A4GX TCGA-HU-A4H4 TCGA-IN-7808 TCGA-IN-8663 
        6.25        10.19        17.69         3.55         3.39 

$subtype2
TCGA-BR-4279 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6705 
        9.57        11.70        10.85         9.40         0.62        13.81 
TCGA-BR-6706 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6803 TCGA-BR-7196 TCGA-BR-7722 
        2.17         0.66         1.12         0.66         1.22         0.16 
TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8058 TCGA-BR-8059 
        0.95         0.69         0.16         1.08         1.12         0.82 
TCGA-BR-8080 TCGA-BR-8284 TCGA-BR-8289 TCGA-BR-8297 TCGA-BR-8362 TCGA-BR-8364 
        0.49         0.72         0.26         0.76         0.36         2.20 
TCGA-BR-8365 TCGA-BR-8367 TCGA-BR-8369 TCGA-BR-8370 TCGA-BR-8371 TCGA-BR-8380 
        2.96         1.08         0.82         0.56         0.36         0.69 
TCGA-BR-8384 TCGA-BR-8588 TCGA-BR-8590 TCGA-BR-8591 TCGA-BR-8592 TCGA-BR-8677 
        0.69         0.76         2.14         0.20         0.20         0.49 
TCGA-BR-8682 TCGA-BR-8686 TCGA-BR-A44T TCGA-BR-A453 TCGA-BR-A4IU TCGA-BR-A4IV 
        1.64         0.56         0.43         3.02         0.59         0.92 
TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J7 
        0.79         0.79         0.53         0.43         0.13         0.46 
TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-CD-5798 TCGA-CD-5803 TCGA-CD-8530 TCGA-CD-8532 
        0.23         0.10         2.83         0.07         0.16         0.10 
TCGA-CD-A489 TCGA-CD-A48A TCGA-CD-A4MI TCGA-CG-4472 TCGA-CG-5717 TCGA-CG-5728 
        0.13         0.13         0.10        12.00         6.94        65.10 
TCGA-CG-5732 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
       55.04        11.93        19.13        18.84        18.54        18.61 
TCGA-D7-6818 TCGA-D7-8574 TCGA-D7-8578 TCGA-D7-8579 TCGA-D7-A4YU TCGA-D7-A4Z0 
       10.55         4.18         5.23         4.77         6.90         4.87 
TCGA-EQ-5647 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8210 TCGA-HU-A4GJ 
        0.62         3.02         3.58        59.05         5.03        21.37 
TCGA-HU-A4GQ TCGA-HU-A4GY TCGA-IN-7806 TCGA-IN-8462 
        0.10         0.26         6.87        10.49 

$subtype3
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 
        1.48         0.46         1.25         0.13         1.05         0.82 
TCGA-BR-7717 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 
        0.69         4.54         0.99         1.32         0.69         0.95 
TCGA-BR-8295 TCGA-BR-8368 TCGA-BR-8373 TCGA-BR-8381 TCGA-BR-8382 TCGA-BR-8483 
        1.55         1.38         0.85         0.26         0.43         0.82 
TCGA-BR-8484 TCGA-BR-8485 TCGA-BR-8486 TCGA-BR-8487 TCGA-BR-8676 TCGA-BR-8678 
        0.69         0.30         0.99         0.69         0.89         0.16 
TCGA-BR-8679 TCGA-BR-8680 TCGA-BR-8683 TCGA-BR-8687 TCGA-BR-8690 TCGA-BR-A44U 
        0.16         0.79         0.59         0.62         0.59         1.15 
TCGA-BR-A452 TCGA-BR-A4CQ TCGA-BR-A4CR TCGA-BR-A4CS TCGA-BR-A4IY TCGA-BR-A4J1 
        0.66         2.24         1.68         0.92         0.39         0.72 
TCGA-BR-A4PD TCGA-BR-A4PF TCGA-BR-A4QI TCGA-CD-5800 TCGA-CD-8524 TCGA-CD-8525 
        1.35         0.72         0.49        13.15         0.07         0.07 
TCGA-CD-8526 TCGA-CD-8527 TCGA-CD-8528 TCGA-CD-8529 TCGA-CD-8531 TCGA-CD-8533 
        0.07         0.07         0.10         0.13         0.10         0.13 
TCGA-CD-8535 TCGA-CD-8536 TCGA-CD-A486 TCGA-CD-A487 TCGA-CD-A48C TCGA-CD-A4MH 
        0.13         0.10         0.07         0.13         0.13         0.10 
TCGA-CD-A4MJ TCGA-CG-4438 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4466 TCGA-CG-5725 
        0.10        54.05        19.07        21.99        18.94        15.02 
TCGA-D7-5578 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6820 TCGA-D7-6822 TCGA-D7-8570 
       12.66        17.19        10.26        11.31        12.30         7.99 
TCGA-D7-8572 TCGA-D7-8573 TCGA-D7-8575 TCGA-D7-8576 TCGA-D7-A4YT TCGA-D7-A4YV 
        0.85         3.88         0.20         3.19         4.24         5.92 
TCGA-EQ-8122 TCGA-EQ-A4SO TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-8099 
        7.79         7.96        72.23         0.39         0.20         1.02 
TCGA-FP-8631 TCGA-FP-A4BF TCGA-HJ-7597 TCGA-HU-8243 TCGA-HU-8245 TCGA-HU-8249 
        0.56         1.55        26.43         5.92        12.59        14.17 
TCGA-HU-8602 TCGA-HU-8604 TCGA-HU-8608 TCGA-HU-8610 TCGA-HU-A4G2 TCGA-HU-A4G6 
       11.41        12.10        10.62         0.76        15.19        12.30 
TCGA-HU-A4G8 TCGA-HU-A4G9 TCGA-HU-A4GC TCGA-HU-A4GD TCGA-HU-A4GF TCGA-HU-A4GH 
       11.84        15.22         3.25        14.10        17.06        11.77 
TCGA-HU-A4GP TCGA-HU-A4GT TCGA-HU-A4H0 TCGA-HU-A4H2 TCGA-HU-A4H3 TCGA-HU-A4H5 
        8.98         6.51         2.10        12.95        19.36        12.30 
TCGA-HU-A4H6 TCGA-HU-A4H8 TCGA-HU-A4HB TCGA-HU-A4HD TCGA-IP-7968 
        9.63         8.88         8.81        27.42         2.53 

subtype1 subtype2 subtype3 
    0.07     0.07     0.07 
subtype1 subtype2 subtype3 
   70.06    65.10    72.23 
subtype1 subtype2 subtype3 
    6.25     0.87     1.32 
[1] "0.1 - 70.1 (6.2)" "0.1 - 65.1 (0.9)" "0.1 - 72.2 (1.3)"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [13] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [19] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [43] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [49] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [55] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [61] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [67] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [73] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [85] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [91] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[103] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[115] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[121] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[133] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[145] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[157] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[163] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[169] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[175] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[181] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[187] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[193] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[199] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[205] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[211] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[217] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[223] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[229] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[235] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[241] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[247] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[253] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[259] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[265] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[271] "subtype1" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [13] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [19] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [43] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [49] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [55] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [61] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [67] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [73] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [85] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [91] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[103] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[115] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[121] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[133] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[145] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[157] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[163] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[169] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[175] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[181] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[187] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[193] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[199] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[205] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[211] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[217] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[223] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[229] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[235] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[241] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[247] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[253] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[259] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[265] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[271] "subtype1" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [13] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [19] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [43] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [49] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [55] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [61] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [67] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [73] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [85] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [91] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[103] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[115] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[121] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[133] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[145] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[157] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[163] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[169] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[175] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[181] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[187] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[193] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[199] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[205] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[211] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[217] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[223] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[229] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[235] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[241] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[247] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[253] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[259] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[265] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[271] "subtype1" "subtype3"
D7V2, continuous
          vv
clus       STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB STAGE III
  subtype1       1        3        9       11        11        11         2
  subtype2       0        0        5        9         9        12         1
  subtype3       1        8       14        9        12        20         0
          vv
clus       STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  subtype1         16          8          6       14
  subtype2         13         16         14        9
  subtype3         19         14          9        6
D7V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1  5 34 40 18
  subtype2  0 17 36 35
  subtype3  8 24 49 31
D7V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 29 32 20 14
  subtype2 24 25 15 25
  subtype3 47 30 20 15
D7V5, multiclass
          vv
clus        M0  M1  MX
  subtype1  86  12   4
  subtype2  84   5   2
  subtype3 103   3   8
D7V6, multiclass
D7V7, binary
          cls
clus        0  1
  subtype1 42 60
  subtype2 30 61
  subtype3 47 67
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   42   60
  subtype2   30   61
  subtype3   47   67
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       42       30       47
  MALE         60       61       67
          vv
clus       STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  subtype1                                    15
  subtype2                                    25
  subtype3                                    11
          vv
clus       STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                     50
  subtype2                                                     45
  subtype3                                                     49
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                                23
  subtype2                                                                 7
  subtype3                                                                15
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  subtype1                                               10
  subtype2                                                4
  subtype3                                               26
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  subtype1                                                        3
  subtype2                                                        8
  subtype3                                                        5
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  subtype1                                                         0
  subtype2                                                         0
  subtype3                                                         6
          vv
clus       STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  subtype1                                        0
  subtype2                                        1
  subtype3                                        2
D7V8, multiclass
D7V9, binary
          cls
clus         0   1
  subtype1   1 101
  subtype2   2  89
  subtype3   4 110
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1  101
  subtype2    2   89
  subtype3    4  110
     clus
vv    subtype1 subtype2 subtype3
  NO         1        2        4
  YES      101       89      110
          vv
clus        R0  R1  R2  RX
  subtype1  66   4  10  17
  subtype2  75   3   1   5
  subtype3 101   3   1   2
D7V10, multiclass
D7V11, continuous

Clustering(8) Variable = MIRSEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2        0   1
  subtype1 101  18
  subtype2  63   7
  subtype3  75   8
subtype1 subtype2 subtype3 
     119       70       83 
subtype1 subtype2 subtype3 
      18        7        8 
$subtype1
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4184 TCGA-BR-4201 TCGA-BR-4267 
        5.62         0.10         6.61         6.94        30.90         6.15 
TCGA-BR-4280 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6458 TCGA-BR-6566 TCGA-BR-6707 
        6.61         8.45        13.12         6.97        12.43        11.61 
TCGA-BR-6709 TCGA-BR-6802 TCGA-BR-6852 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 
        1.22         0.76         0.26         0.46         1.25         0.13 
TCGA-BR-7851 TCGA-BR-7958 TCGA-BR-8078 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8360 
        0.99         0.16         0.95         0.26         0.43         0.20 
TCGA-BR-8361 TCGA-BR-8363 TCGA-BR-8366 TCGA-BR-8368 TCGA-BR-8484 TCGA-BR-8486 
        0.39         0.33         0.56         1.38         0.69         0.99 
TCGA-BR-8487 TCGA-BR-8589 TCGA-BR-8676 TCGA-BR-8680 TCGA-BR-A44U TCGA-BR-A4CQ 
        0.69         1.91         0.89         0.79         1.15         2.24 
TCGA-BR-A4CS TCGA-BR-A4IY TCGA-BR-A4J4 TCGA-BR-A4PF TCGA-BR-A4QL TCGA-BR-A4QM 
        0.92         0.39         0.53         0.72         2.24         0.56 
TCGA-CD-5799 TCGA-CD-5801 TCGA-CD-5813 TCGA-CD-8528 TCGA-CD-8531 TCGA-CD-8536 
        3.25        13.18         0.39         0.10         0.10         0.10 
TCGA-CD-A48C TCGA-CD-A4MG TCGA-CD-A4MJ TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 
        0.13         0.07         0.10         3.02        27.02        15.95 
TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        1.02         7.96         8.05        14.01        29.98        47.05 
TCGA-CG-4455 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5717 TCGA-CG-5720 
       12.03         8.98         7.07         1.02         6.94         0.99 
TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5733 TCGA-D7-5577 TCGA-D7-6519 
        5.98        70.06        12.03        21.07        12.36        20.55 
TCGA-D7-6525 TCGA-D7-6817 TCGA-D7-8570 TCGA-D7-8573 TCGA-D7-8574 TCGA-D7-8575 
       13.35        12.79         7.99         3.88         4.18         0.20 
TCGA-D7-8576 TCGA-D7-A4YT TCGA-D7-A4YX TCGA-D7-A4YY TCGA-D7-A4Z0 TCGA-EQ-A4SO 
        3.19         4.24         8.02         3.42         4.87         7.96 
TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-F1-A448 TCGA-FP-7829 TCGA-FP-8211 
        6.54         2.01        72.23         8.25         0.20         2.83 
TCGA-FP-A4BE TCGA-FP-A4BF TCGA-HU-8238 TCGA-HU-8244 TCGA-HU-8245 TCGA-HU-8602 
        0.99         1.55         1.51        14.27        12.59        11.41 
TCGA-HU-8604 TCGA-HU-8608 TCGA-HU-8610 TCGA-HU-A4G2 TCGA-HU-A4G3 TCGA-HU-A4G6 
       12.10        10.62         0.76        15.19         5.59        12.30 
TCGA-HU-A4G8 TCGA-HU-A4G9 TCGA-HU-A4GC TCGA-HU-A4GN TCGA-HU-A4GP TCGA-HU-A4GT 
       11.84        15.22         3.25        21.04         8.98         6.51 
TCGA-HU-A4GU TCGA-HU-A4GX TCGA-HU-A4GY TCGA-HU-A4H0 TCGA-HU-A4H3 TCGA-HU-A4H4 
        6.25        10.19         0.26         2.10        19.36        17.69 
TCGA-HU-A4H6 TCGA-HU-A4H8 TCGA-IN-8462 TCGA-IN-8663 TCGA-IP-7968 
        9.63         8.88        10.49         3.39         2.53 

$subtype2
TCGA-BR-6565 TCGA-BR-7197 TCGA-BR-7716 TCGA-BR-7723 TCGA-BR-7901 TCGA-BR-8059 
        0.62         1.48         0.82         4.54         0.95         0.82 
TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8289 TCGA-BR-8295 TCGA-BR-8297 TCGA-BR-8373 
        1.32         0.69         0.26         1.55         0.76         0.85 
TCGA-BR-8381 TCGA-BR-8485 TCGA-BR-8590 TCGA-BR-8678 TCGA-BR-8687 TCGA-BR-8690 
        0.26         0.30         2.14         0.16         0.62         0.59 
TCGA-BR-A452 TCGA-BR-A4CR TCGA-BR-A4J1 TCGA-BR-A4PD TCGA-CD-5800 TCGA-CD-5802 
        0.66         1.68         0.72         1.35        13.15         0.30 
TCGA-CD-8524 TCGA-CD-8525 TCGA-CD-8526 TCGA-CD-8527 TCGA-CD-8529 TCGA-CD-8530 
        0.07         0.07         0.07         0.07         0.13         0.16 
TCGA-CD-8533 TCGA-CD-8535 TCGA-CD-A486 TCGA-CD-A487 TCGA-CD-A4MH TCGA-CG-4300 
        0.13         0.13         0.07         0.13         0.10        20.02 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4466 TCGA-CG-5718 
       54.05         4.01        19.07        21.99        18.94         1.02 
TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5578 TCGA-D7-6520 
       15.02        31.04         4.01        55.04        12.66        18.84 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6818 TCGA-D7-6820 
       17.19        10.26        15.22        15.98        10.55        11.31 
TCGA-D7-6822 TCGA-D7-8572 TCGA-D7-8578 TCGA-D7-A4YV TCGA-EQ-8122 TCGA-FP-8099 
       12.30         0.85         5.23         5.92         7.79         1.02 
TCGA-FP-8631 TCGA-HU-8243 TCGA-HU-8249 TCGA-HU-A4GD TCGA-HU-A4GF TCGA-HU-A4GH 
        0.56         5.92        14.17        14.10        17.06        11.77 
TCGA-HU-A4H2 TCGA-HU-A4H5 TCGA-HU-A4HB TCGA-HU-A4HD 
       12.95        12.30         8.81        27.42 

$subtype3
TCGA-BR-4279 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6705 TCGA-BR-6706 
        9.57        11.70        10.85         9.40        13.81         2.17 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6803 TCGA-BR-7196 TCGA-BR-7715 TCGA-BR-7717 
        0.66         1.12         0.66         1.22         1.05         0.69 
TCGA-BR-7722 TCGA-BR-7957 TCGA-BR-7959 TCGA-BR-8058 TCGA-BR-8080 TCGA-BR-8081 
        0.16         0.69         1.08         1.12         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8291 TCGA-BR-8296 TCGA-BR-8362 TCGA-BR-8364 TCGA-BR-8365 
        0.72         1.18         1.48         0.36         2.20         2.96 
TCGA-BR-8367 TCGA-BR-8369 TCGA-BR-8370 TCGA-BR-8371 TCGA-BR-8372 TCGA-BR-8380 
        1.08         0.82         0.56         0.36         0.59         0.69 
TCGA-BR-8382 TCGA-BR-8384 TCGA-BR-8483 TCGA-BR-8588 TCGA-BR-8591 TCGA-BR-8592 
        0.43         0.69         0.82         0.76         0.20         0.20 
TCGA-BR-8677 TCGA-BR-8679 TCGA-BR-8682 TCGA-BR-8683 TCGA-BR-8686 TCGA-BR-A44T 
        0.49         0.16         1.64         0.59         0.56         0.43 
TCGA-BR-A453 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J5 
        3.02         0.59         0.92         0.79         0.79         0.43 
TCGA-BR-A4J6 TCGA-BR-A4J7 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4QI TCGA-CD-5798 
        0.13         0.46         0.23         0.10         0.49         2.83 
TCGA-CD-5803 TCGA-CD-8532 TCGA-CD-A489 TCGA-CD-A48A TCGA-CD-A4MI TCGA-CG-4472 
        0.07         0.10         0.13         0.13         0.10        12.00 
TCGA-CG-5719 TCGA-CG-5722 TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5734 TCGA-D7-5579 
        1.02         0.95        28.96        65.10         7.99        11.93 
TCGA-D7-6518 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-8579 TCGA-D7-A4YU 
       19.13        18.54        18.61        17.85         4.77         6.90 
TCGA-EQ-5647 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8210 
        0.62         0.39         3.02         3.58        59.05         5.03 
TCGA-HJ-7597 TCGA-HU-A4GJ TCGA-HU-A4GQ TCGA-IN-7806 TCGA-IN-7808 
       26.43        21.37         0.10         6.87         3.55 

subtype1 subtype2 subtype3 
    0.07     0.07     0.07 
subtype1 subtype2 subtype3 
   72.23    55.04    65.10 
subtype1 subtype2 subtype3 
   4.180    1.615    0.820 
[1] "0.1 - 72.2 (4.2)" "0.1 - 55.0 (1.6)" "0.1 - 65.1 (0.8)"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [13] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [19] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [25] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
 [31] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [37] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [43] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [49] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [55] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [61] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [67] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [73] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [79] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [85] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [91] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [97] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[103] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[115] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[121] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[133] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[139] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[145] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[157] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[163] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[169] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[175] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[181] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[187] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[193] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[199] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[205] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[211] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[217] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[223] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[229] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[235] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[241] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[247] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[253] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[259] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[265] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[271] "subtype1" "subtype1"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [13] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [19] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [25] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
 [31] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [37] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [43] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [49] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [55] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [61] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [67] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [73] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [79] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [85] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [91] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [97] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[103] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[115] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[121] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[133] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[139] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[145] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[157] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[163] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[169] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[175] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[181] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[187] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[193] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[199] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[205] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[211] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[217] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[223] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[229] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[235] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[241] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[247] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[253] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[259] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[265] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[271] "subtype1" "subtype1"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [13] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [19] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [25] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
 [31] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [37] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [43] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [49] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [55] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [61] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [67] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [73] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [79] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [85] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [91] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [97] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[103] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[115] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[121] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[133] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[139] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[145] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[157] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[163] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[169] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[175] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[181] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[187] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[193] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[199] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[205] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[211] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[217] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[223] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[229] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[235] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[241] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[247] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[253] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[259] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[265] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[271] "subtype1" "subtype1"
D8V2, continuous
          vv
clus       STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB STAGE III
  subtype1       2        9       14       11        17        16         1
  subtype2       0        1        7       11         4        16         1
  subtype3       0        1        7        7        11        11         1
          vv
clus       STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  subtype1         24         18          7        9
  subtype2         12          5          8        8
  subtype3         12         15         14       12
D8V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 11 41 49 30
  subtype2  1 21 34 19
  subtype3  1 13 42 35
D8V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 48 41 23 19
  subtype2 23 24 14 12
  subtype3 29 22 18 23
D8V5, multiclass
          vv
clus        M0  M1  MX
  subtype1 122   7   6
  subtype2  68   5   4
  subtype3  83   8   4
D8V6, multiclass
D8V7, binary
          cls
clus        0  1
  subtype1 53 82
  subtype2 29 48
  subtype3 37 58
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   53   82
  subtype2   29   48
  subtype3   37   58
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       53       29       37
  MALE         82       48       58
          vv
clus       STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  subtype1                                    22
  subtype2                                     6
  subtype3                                    23
          vv
clus       STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                     67
  subtype2                                                     31
  subtype3                                                     46
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                                18
  subtype2                                                                17
  subtype3                                                                10
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  subtype1                                               19
  subtype2                                               17
  subtype3                                                4
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  subtype1                                                        5
  subtype2                                                        3
  subtype3                                                        8
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  subtype1                                                         3
  subtype2                                                         3
  subtype3                                                         0
          vv
clus       STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  subtype1                                        1
  subtype2                                        0
  subtype3                                        2
D8V8, multiclass
D8V9, binary
          cls
clus         0   1
  subtype1   3 132
  subtype2   3  74
  subtype3   1  94
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3  132
  subtype2    3   74
  subtype3    1   94
     clus
vv    subtype1 subtype2 subtype3
  NO         3        3        1
  YES      132       74       94
          vv
clus        R0  R1  R2  RX
  subtype1 106   4   6  13
  subtype2  64   1   3   4
  subtype3  72   5   3   7
D8V10, multiclass
D8V11, continuous

Clustering(9) Variable = MIRSEQ_MATURE_CNMF
D9V1, survival
          sevent
clus2        0   1
  subtype1  42  10
  subtype2  71   4
  subtype3 115   7
subtype1 subtype2 subtype3 
      52       75      122 
subtype1 subtype2 subtype3 
      10        4        7 
$subtype1
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6458 TCGA-BR-6565 
        5.62         0.10         8.45        13.12         6.97         0.62 
TCGA-BR-6566 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6801 TCGA-BR-6802 
       12.43         2.17        11.61         1.22         1.12         0.76 
TCGA-BR-6852 TCGA-BR-8284 TCGA-BR-8296 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 
        0.26         0.72         1.48         2.83         3.25        13.15 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5813 TCGA-CD-8531 TCGA-CG-4437 TCGA-CG-4441 
       13.18         0.30         0.39         0.10         8.05        14.01 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       12.03        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6519 TCGA-D7-6520 
       21.07         7.99        12.36        12.66        20.55        18.84 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6817 
       17.85        13.35        17.19        10.26        15.22        12.79 
TCGA-D7-6818 TCGA-D7-A4YY TCGA-EQ-5647 TCGA-F1-6874 
       10.55         3.42         0.62         2.01 

$subtype2
TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6705 TCGA-BR-6710 TCGA-BR-6803 
       11.70        10.85         9.40        13.81         0.66         0.66 
TCGA-BR-7196 TCGA-BR-7722 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7959 TCGA-BR-8058 
        1.22         0.16         0.95         0.69         1.08         1.12 
TCGA-BR-8059 TCGA-BR-8080 TCGA-BR-8285 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8297 
        0.82         0.49         0.26         0.26         1.18         0.76 
TCGA-BR-8364 TCGA-BR-8365 TCGA-BR-8366 TCGA-BR-8367 TCGA-BR-8369 TCGA-BR-8371 
        2.20         2.96         0.56         1.08         0.82         0.36 
TCGA-BR-8380 TCGA-BR-8384 TCGA-BR-8588 TCGA-BR-8590 TCGA-BR-8591 TCGA-BR-8592 
        0.69         0.69         0.76         2.14         0.20         0.20 
TCGA-BR-8677 TCGA-BR-8682 TCGA-BR-8683 TCGA-BR-8686 TCGA-BR-A44T TCGA-BR-A453 
        0.49         1.64         0.59         0.56         0.43         3.02 
TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 
        0.59         0.92         0.79         0.79         0.53         0.43 
TCGA-BR-A4J6 TCGA-BR-A4J7 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-CD-5803 TCGA-CD-8524 
        0.13         0.46         0.23         0.10         0.07         0.07 
TCGA-CD-8525 TCGA-CD-8530 TCGA-CD-8532 TCGA-CD-A487 TCGA-CD-A489 TCGA-CD-A4MI 
        0.07         0.16         0.10         0.13         0.13         0.10 
TCGA-CG-5717 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-8572 
        6.94        11.93        19.13        18.54        18.61         0.85 
TCGA-D7-8574 TCGA-D7-8578 TCGA-D7-8579 TCGA-D7-A4YU TCGA-D7-A4Z0 TCGA-EQ-8122 
        4.18         5.23         4.77         6.90         4.87         7.79 
TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8210 TCGA-HU-A4GJ 
        0.39         3.02         3.58        59.05         5.03        21.37 
TCGA-HU-A4GQ TCGA-HU-A4GY TCGA-IN-7806 
        0.10         0.26         6.87 

$subtype3
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 
        1.48         0.46         1.25         0.13         1.05         0.82 
TCGA-BR-7717 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7958 TCGA-BR-8060 TCGA-BR-8077 
        0.69         4.54         0.99         0.16         1.32         0.69 
TCGA-BR-8078 TCGA-BR-8081 TCGA-BR-8286 TCGA-BR-8295 TCGA-BR-8360 TCGA-BR-8361 
        0.95         0.46         0.43         1.55         0.20         0.39 
TCGA-BR-8362 TCGA-BR-8363 TCGA-BR-8368 TCGA-BR-8370 TCGA-BR-8372 TCGA-BR-8373 
        0.36         0.33         1.38         0.56         0.59         0.85 
TCGA-BR-8381 TCGA-BR-8382 TCGA-BR-8483 TCGA-BR-8484 TCGA-BR-8485 TCGA-BR-8486 
        0.26         0.43         0.82         0.69         0.30         0.99 
TCGA-BR-8487 TCGA-BR-8589 TCGA-BR-8676 TCGA-BR-8678 TCGA-BR-8679 TCGA-BR-8680 
        0.69         1.91         0.89         0.16         0.16         0.79 
TCGA-BR-8687 TCGA-BR-8690 TCGA-BR-A44U TCGA-BR-A452 TCGA-BR-A4CQ TCGA-BR-A4CR 
        0.62         0.59         1.15         0.66         2.24         1.68 
TCGA-BR-A4CS TCGA-BR-A4IY TCGA-BR-A4J1 TCGA-BR-A4PD TCGA-BR-A4PF TCGA-BR-A4QI 
        0.92         0.39         0.72         1.35         0.72         0.49 
TCGA-BR-A4QL TCGA-BR-A4QM TCGA-CD-8526 TCGA-CD-8527 TCGA-CD-8528 TCGA-CD-8529 
        2.24         0.56         0.07         0.07         0.10         0.13 
TCGA-CD-8533 TCGA-CD-8535 TCGA-CD-8536 TCGA-CD-A486 TCGA-CD-A48A TCGA-CD-A48C 
        0.13         0.13         0.10         0.07         0.13         0.13 
TCGA-CD-A4MG TCGA-CD-A4MH TCGA-CD-A4MJ TCGA-CG-4449 TCGA-CG-5725 TCGA-D7-6815 
        0.07         0.10         0.10        19.07        15.02        15.98 
TCGA-D7-6820 TCGA-D7-6822 TCGA-D7-8570 TCGA-D7-8573 TCGA-D7-8575 TCGA-D7-8576 
       11.31        12.30         7.99         3.88         0.20         3.19 
TCGA-D7-A4YT TCGA-D7-A4YV TCGA-D7-A4YX TCGA-EQ-A4SO TCGA-F1-6177 TCGA-F1-6875 
        4.24         5.92         8.02         7.96         6.54        72.23 
TCGA-F1-A448 TCGA-FP-7829 TCGA-FP-8099 TCGA-FP-8211 TCGA-FP-8631 TCGA-FP-A4BE 
        8.25         0.20         1.02         2.83         0.56         0.99 
TCGA-FP-A4BF TCGA-HJ-7597 TCGA-HU-8238 TCGA-HU-8243 TCGA-HU-8244 TCGA-HU-8245 
        1.55        26.43         1.51         5.92        14.27        12.59 
TCGA-HU-8249 TCGA-HU-8602 TCGA-HU-8604 TCGA-HU-8608 TCGA-HU-8610 TCGA-HU-A4G2 
       14.17        11.41        12.10        10.62         0.76        15.19 
TCGA-HU-A4G3 TCGA-HU-A4G6 TCGA-HU-A4G8 TCGA-HU-A4G9 TCGA-HU-A4GC TCGA-HU-A4GD 
        5.59        12.30        11.84        15.22         3.25        14.10 
TCGA-HU-A4GF TCGA-HU-A4GH TCGA-HU-A4GN TCGA-HU-A4GP TCGA-HU-A4GT TCGA-HU-A4GU 
       17.06        11.77        21.04         8.98         6.51         6.25 
TCGA-HU-A4GX TCGA-HU-A4H0 TCGA-HU-A4H2 TCGA-HU-A4H3 TCGA-HU-A4H4 TCGA-HU-A4H5 
       10.19         2.10        12.95        19.36        17.69        12.30 
TCGA-HU-A4H6 TCGA-HU-A4H8 TCGA-HU-A4HB TCGA-HU-A4HD TCGA-IN-7808 TCGA-IN-8462 
        9.63         8.88         8.81        27.42         3.55        10.49 
TCGA-IN-8663 TCGA-IP-7968 
        3.39         2.53 

subtype1 subtype2 subtype3 
    0.10     0.07     0.07 
subtype1 subtype2 subtype3 
   70.06    59.05    72.23 
subtype1 subtype2 subtype3 
   8.020    0.790    1.365 
[1] "0.1 - 70.1 (8.0)" "0.1 - 59.0 (0.8)" "0.1 - 72.2 (1.4)"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [13] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [37] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [43] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [49] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [61] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [67] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [73] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[115] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[127] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[133] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[139] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[145] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[157] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[163] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[169] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[175] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[181] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[187] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[193] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[199] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[205] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[211] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[217] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[229] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[235] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[241] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[247] "subtype3" "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [13] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [37] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [43] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [49] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [61] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [67] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [73] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[115] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[127] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[133] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[139] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[145] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[157] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[163] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[169] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[175] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[181] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[187] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[193] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[199] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[205] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[211] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[217] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[229] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[235] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[241] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[247] "subtype3" "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [13] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [37] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [43] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [49] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [61] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [67] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [73] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[115] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[127] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[133] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[139] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[145] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[157] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[163] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[169] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[175] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[181] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[187] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[193] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[199] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[205] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[211] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[217] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[229] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[235] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[241] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[247] "subtype3" "subtype3" "subtype3"
D9V2, continuous
          vv
clus       STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB STAGE III
  subtype1       0        1        5       11         7         4         0
  subtype2       0        0        5        7         8        14         1
  subtype3       2        9       12        8        17        24         1
          vv
clus       STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  subtype1         12          4          2        9
  subtype2         11         15         12        5
  subtype3         19         18         14        4
D9V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1  1 22 24  8
  subtype2  0 12 36 30
  subtype3 10 27 54 37
D9V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 20 17 10  8
  subtype2 21 21 16 19
  subtype3 51 32 23 22
D9V5, multiclass
          vv
clus        M0  M1  MX
  subtype1  49   6   0
  subtype2  70   4   4
  subtype3 117   3   8
D9V6, multiclass
D9V7, binary
          cls
clus        0  1
  subtype1 21 34
  subtype2 30 48
  subtype3 47 81
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   21   34
  subtype2   30   48
  subtype3   47   81
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       21       30       47
  MALE         34       48       81
          vv
clus       STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  subtype1                                     8
  subtype2                                    25
  subtype3                                    13
          vv
clus       STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                     19
  subtype2                                                     34
  subtype3                                                     63
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                                18
  subtype2                                                                 7
  subtype3                                                                11
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  subtype1                                                6
  subtype2                                                4
  subtype3                                               29
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  subtype1                                                        2
  subtype2                                                        7
  subtype3                                                        6
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  subtype1                                                         2
  subtype2                                                         0
  subtype3                                                         4
          vv
clus       STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  subtype1                                        0
  subtype2                                        1
  subtype3                                        2
D9V8, multiclass
D9V9, binary
          cls
clus         0   1
  subtype1   3  52
  subtype2   0  78
  subtype3   4 124
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3   52
  subtype2    0   78
  subtype3    4  124
     clus
vv    subtype1 subtype2 subtype3
  NO         3        0        4
  YES       52       78      124
          vv
clus        R0  R1  R2
  subtype1  44   2   5
  subtype2  68   3   0
  subtype3 116   4   0
D9V10, multiclass
D9V11, continuous

Clustering(10) Variable = MIRSEQ_MATURE_CHIERARCHICAL
D10V1, survival
          sevent
clus2        0   1
  subtype1  52   3
  subtype2  66   4
  subtype3 110  14
subtype1 subtype2 subtype3 
      55       70      124 
subtype1 subtype2 subtype3 
       3        4       14 
$subtype1
TCGA-BR-6565 TCGA-BR-7197 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7723 TCGA-BR-7901 
        0.62         1.48         1.05         0.82         4.54         0.95 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8289 TCGA-BR-8295 TCGA-BR-8373 TCGA-BR-8483 
        0.82         1.32         0.26         1.55         0.85         0.82 
TCGA-BR-8485 TCGA-BR-8678 TCGA-BR-8679 TCGA-BR-8687 TCGA-BR-8690 TCGA-BR-A452 
        0.30         0.16         0.16         0.62         0.59         0.66 
TCGA-BR-A4J1 TCGA-BR-A4PD TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-8524 TCGA-CD-8525 
        0.72         1.35        13.15         0.30         0.07         0.07 
TCGA-CD-8526 TCGA-CD-8527 TCGA-CD-8529 TCGA-CD-8530 TCGA-CD-8533 TCGA-CD-8535 
        0.07         0.07         0.13         0.16         0.13         0.13 
TCGA-CD-A486 TCGA-CD-A487 TCGA-CD-A48A TCGA-CD-A4MH TCGA-CG-4449 TCGA-CG-5718 
        0.07         0.13         0.13         0.10        19.07         1.02 
TCGA-CG-5725 TCGA-D7-6520 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6818 TCGA-D7-6820 
       15.02        18.84        17.19        10.26        10.55        11.31 
TCGA-D7-6822 TCGA-D7-8572 TCGA-D7-8578 TCGA-D7-A4YV TCGA-EQ-8122 TCGA-FP-8099 
       12.30         0.85         5.23         5.92         7.79         1.02 
TCGA-FP-8631 TCGA-HU-A4GD TCGA-HU-A4GF TCGA-HU-A4GH TCGA-HU-A4H2 TCGA-HU-A4H5 
        0.56        14.10        17.06        11.77        12.95        12.30 
TCGA-HU-A4HD 
       27.42 

$subtype2
TCGA-BR-6457 TCGA-BR-6564 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6710 TCGA-BR-6801 
       11.70         9.40        13.81         2.17         0.66         1.12 
TCGA-BR-6803 TCGA-BR-7196 TCGA-BR-7722 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.66         1.22         0.16         0.69         0.16         1.08 
TCGA-BR-8080 TCGA-BR-8285 TCGA-BR-8291 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8362 
        0.49         0.26         1.18         1.48         0.76         0.36 
TCGA-BR-8364 TCGA-BR-8365 TCGA-BR-8367 TCGA-BR-8369 TCGA-BR-8370 TCGA-BR-8371 
        2.20         2.96         1.08         0.82         0.56         0.36 
TCGA-BR-8380 TCGA-BR-8384 TCGA-BR-8588 TCGA-BR-8590 TCGA-BR-8592 TCGA-BR-8677 
        0.69         0.69         0.76         2.14         0.20         0.49 
TCGA-BR-8682 TCGA-BR-8683 TCGA-BR-8686 TCGA-BR-A44T TCGA-BR-A453 TCGA-BR-A4IU 
        1.64         0.59         0.56         0.43         3.02         0.59 
TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J7 
        0.92         0.79         0.79         0.43         0.13         0.46 
TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4QI TCGA-CD-5798 TCGA-CD-5803 TCGA-CD-A489 
        0.23         0.10         0.49         2.83         0.07         0.13 
TCGA-CD-A4MI TCGA-CG-5719 TCGA-CG-5722 TCGA-CG-5728 TCGA-D7-5579 TCGA-D7-6518 
        0.10         1.02         0.95        65.10        11.93        19.13 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-8574 TCGA-D7-8575 TCGA-D7-8579 TCGA-D7-A4YU 
       18.54        18.61         4.18         0.20         4.77         6.90 
TCGA-D7-A4Z0 TCGA-EQ-5647 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8210 
        4.87         0.62         3.02         3.58        59.05         5.03 
TCGA-FP-8211 TCGA-HU-A4GJ TCGA-HU-A4GQ TCGA-HU-A4GY 
        2.83        21.37         0.10         0.26 

$subtype3
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6458 TCGA-BR-6563 
        5.62         0.10         8.45        13.12         6.97        10.85 
TCGA-BR-6566 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6802 TCGA-BR-6852 TCGA-BR-7703 
       12.43        11.61         1.22         0.76         0.26         0.46 
TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7717 TCGA-BR-7851 TCGA-BR-8058 TCGA-BR-8077 
        1.25         0.13         0.69         0.99         1.12         0.69 
TCGA-BR-8078 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8286 TCGA-BR-8360 TCGA-BR-8361 
        0.95         0.46         0.72         0.43         0.20         0.39 
TCGA-BR-8363 TCGA-BR-8366 TCGA-BR-8368 TCGA-BR-8372 TCGA-BR-8381 TCGA-BR-8382 
        0.33         0.56         1.38         0.59         0.26         0.43 
TCGA-BR-8484 TCGA-BR-8486 TCGA-BR-8487 TCGA-BR-8589 TCGA-BR-8591 TCGA-BR-8676 
        0.69         0.99         0.69         1.91         0.20         0.89 
TCGA-BR-8680 TCGA-BR-A44U TCGA-BR-A4CQ TCGA-BR-A4CR TCGA-BR-A4CS TCGA-BR-A4IY 
        0.79         1.15         2.24         1.68         0.92         0.39 
TCGA-BR-A4J4 TCGA-BR-A4PF TCGA-BR-A4QL TCGA-BR-A4QM TCGA-CD-5799 TCGA-CD-5801 
        0.53         0.72         2.24         0.56         3.25        13.18 
TCGA-CD-5813 TCGA-CD-8528 TCGA-CD-8531 TCGA-CD-8532 TCGA-CD-8536 TCGA-CD-A48C 
        0.39         0.10         0.10         0.10         0.10         0.13 
TCGA-CD-A4MG TCGA-CD-A4MJ TCGA-CG-4437 TCGA-CG-4441 TCGA-CG-5717 TCGA-CG-5720 
        0.07         0.10         8.05        14.01         6.94         0.99 
TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5730 
        5.98        70.06        12.03        28.96        31.04         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6519 
       55.04        21.07         7.99        12.36        12.66        20.55 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-8570 
       17.85        13.35        15.22        15.98        12.79         7.99 
TCGA-D7-8573 TCGA-D7-8576 TCGA-D7-A4YT TCGA-D7-A4YX TCGA-D7-A4YY TCGA-EQ-A4SO 
        3.88         3.19         4.24         8.02         3.42         7.96 
TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-F1-A448 TCGA-FP-7735 TCGA-FP-7829 
        6.54         2.01        72.23         8.25         0.39         0.20 
TCGA-FP-A4BE TCGA-FP-A4BF TCGA-HJ-7597 TCGA-HU-8238 TCGA-HU-8243 TCGA-HU-8244 
        0.99         1.55        26.43         1.51         5.92        14.27 
TCGA-HU-8245 TCGA-HU-8249 TCGA-HU-8602 TCGA-HU-8604 TCGA-HU-8608 TCGA-HU-8610 
       12.59        14.17        11.41        12.10        10.62         0.76 
TCGA-HU-A4G2 TCGA-HU-A4G3 TCGA-HU-A4G6 TCGA-HU-A4G8 TCGA-HU-A4G9 TCGA-HU-A4GC 
       15.19         5.59        12.30        11.84        15.22         3.25 
TCGA-HU-A4GN TCGA-HU-A4GP TCGA-HU-A4GT TCGA-HU-A4GU TCGA-HU-A4GX TCGA-HU-A4H0 
       21.04         8.98         6.51         6.25        10.19         2.10 
TCGA-HU-A4H3 TCGA-HU-A4H4 TCGA-HU-A4H6 TCGA-HU-A4H8 TCGA-HU-A4HB TCGA-IN-7806 
       19.36        17.69         9.63         8.88         8.81         6.87 
TCGA-IN-7808 TCGA-IN-8462 TCGA-IN-8663 TCGA-IP-7968 
        3.55        10.49         3.39         2.53 

subtype1 subtype2 subtype3 
    0.07     0.07     0.07 
subtype1 subtype2 subtype3 
   27.42    65.10    72.23 
subtype1 subtype2 subtype3 
   0.850    0.805    3.485 
[1] "0.1 - 27.4 (0.8)" "0.1 - 65.1 (0.8)" "0.1 - 72.2 (3.5)"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
  [7] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [13] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [25] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [43] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [49] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [55] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [67] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [73] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [79] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[109] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[115] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[121] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[127] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[133] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[139] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[145] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[151] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[163] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[169] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[175] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[181] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[187] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[193] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[199] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[205] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[211] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[217] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[229] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[235] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[241] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[247] "subtype3" "subtype3" "subtype3"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
  [7] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [13] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [25] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [43] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [49] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [55] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [67] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [73] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [79] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[109] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[115] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[121] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[127] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[133] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[139] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[145] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[151] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[163] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[169] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[175] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[181] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[187] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[193] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[199] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[205] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[211] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[217] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[229] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[235] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[241] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[247] "subtype3" "subtype3" "subtype3"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
  [7] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [13] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [25] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [43] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [49] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [55] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [67] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [73] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [79] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[109] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[115] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[121] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[127] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[133] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[139] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[145] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[151] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[163] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[169] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[175] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[181] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[187] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[193] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[199] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[205] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[211] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[217] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[229] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[235] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[241] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[247] "subtype3" "subtype3" "subtype3"
D10V2, continuous
          vv
clus       STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB STAGE III
  subtype1       0        1        6       10         6        13         1
  subtype2       0        0        4        4        10         9         0
  subtype3       2        9       12       12        16        20         1
          vv
clus       STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  subtype1         11          4          2        3
  subtype2         10         15         13        7
  subtype3         21         18         13        8
D10V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1  1 15 30 11
  subtype2  0 10 32 30
  subtype3 10 36 52 34
D10V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 23 20  8  6
  subtype2 21 14 16 20
  subtype3 48 36 25 23
D10V5, multiclass
          vv
clus        M0  M1  MX
  subtype1  52   2   3
  subtype2  63   6   3
  subtype3 121   5   6
D10V6, multiclass
D10V7, binary
          cls
clus        0  1
  subtype1 22 35
  subtype2 28 44
  subtype3 48 84
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   22   35
  subtype2   28   44
  subtype3   48   84
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       22       28       48
  MALE         35       44       84
          vv
clus       STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  subtype1                                     3
  subtype2                                    22
  subtype3                                    21
          vv
clus       STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                     27
  subtype2                                                     30
  subtype3                                                     59
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                                10
  subtype2                                                                 7
  subtype3                                                                19
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  subtype1                                               11
  subtype2                                                5
  subtype3                                               23
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  subtype1                                                        3
  subtype2                                                        7
  subtype3                                                        5
          vv
clus       STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  subtype1                                                         3
  subtype2                                                         0
  subtype3                                                         3
          vv
clus       STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  subtype1                                        0
  subtype2                                        1
  subtype3                                        2
D10V8, multiclass
D10V9, binary
          cls
clus         0   1
  subtype1   3  54
  subtype2   0  72
  subtype3   4 128
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3   54
  subtype2    0   72
  subtype3    4  128
     clus
vv    subtype1 subtype2 subtype3
  NO         3        0        4
  YES       54       72      128
          vv
clus        R0  R1  R2
  subtype1  50   1   0
  subtype2  60   4   2
  subtype3 118   4   3
D10V10, multiclass
D10V11, continuous
> q(save="no")
