
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.81.4078/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.81.4078/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/480201/STAD-TP.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/STAD-TP/4434906/STAD-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=614, in cluster file=220, common to both=219
[1]  26 219
[1] "TRIM48 MUTATION ANALYSIS"
[1] 3
  TRIM48 MUTATED TRIM48 WILD-TYPE 
              14              205 
  TRIM48 MUTATED TRIM48 WILD-TYPE 
              14              205 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              48              171 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              48              171 
[1] "PGM5 MUTATION ANALYSIS"
[1] 3
  PGM5 MUTATED PGM5 WILD-TYPE 
            22            197 
  PGM5 MUTATED PGM5 WILD-TYPE 
            22            197 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
            25            194 
  KRAS MUTATED KRAS WILD-TYPE 
            25            194 
[1] "CBWD1 MUTATION ANALYSIS"
[1] 3
  CBWD1 MUTATED CBWD1 WILD-TYPE 
             28             191 
  CBWD1 MUTATED CBWD1 WILD-TYPE 
             28             191 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            98            121 
  TP53 MUTATED TP53 WILD-TYPE 
            98            121 
[1] "ARID1A MUTATION ANALYSIS"
[1] 3
  ARID1A MUTATED ARID1A WILD-TYPE 
              41              178 
  ARID1A MUTATED ARID1A WILD-TYPE 
              41              178 
[1] "SMAD4 MUTATION ANALYSIS"
[1] 3
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             19             200 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             19             200 
[1] "RHOA MUTATION ANALYSIS"
[1] 3
  RHOA MUTATED RHOA WILD-TYPE 
            13            206 
  RHOA MUTATED RHOA WILD-TYPE 
            13            206 
[1] "MXRA8 MUTATION ANALYSIS"
[1] 3
  MXRA8 MUTATED MXRA8 WILD-TYPE 
             10             209 
  MXRA8 MUTATED MXRA8 WILD-TYPE 
             10             209 
[1] "IRF2 MUTATION ANALYSIS"
[1] 3
  IRF2 MUTATED IRF2 WILD-TYPE 
            15            204 
  IRF2 MUTATED IRF2 WILD-TYPE 
            15            204 
[1] "CDH1 MUTATION ANALYSIS"
[1] 3
  CDH1 MUTATED CDH1 WILD-TYPE 
            18            201 
  CDH1 MUTATED CDH1 WILD-TYPE 
            18            201 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
            14            205 
  PTEN MUTATED PTEN WILD-TYPE 
            14            205 
[1] "FBXW7 MUTATION ANALYSIS"
[1] 3
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             19             200 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             19             200 
[1] "B2M MUTATION ANALYSIS"
[1] 3
  B2M MUTATED B2M WILD-TYPE 
            8           211 
  B2M MUTATED B2M WILD-TYPE 
            8           211 
[1] "PTH2 MUTATION ANALYSIS"
[1] 3
  PTH2 MUTATED PTH2 WILD-TYPE 
             4            215 
  PTH2 MUTATED PTH2 WILD-TYPE 
             4            215 
[1] "FAM46D MUTATION ANALYSIS"
[1] 3
  FAM46D MUTATED FAM46D WILD-TYPE 
               6              213 
  FAM46D MUTATED FAM46D WILD-TYPE 
               6              213 
[1] "APC MUTATION ANALYSIS"
[1] 3
  APC MUTATED APC WILD-TYPE 
           33           186 
  APC MUTATED APC WILD-TYPE 
           33           186 
[1] "RNF43 MUTATION ANALYSIS"
[1] 3
  RNF43 MUTATED RNF43 WILD-TYPE 
              9             210 
  RNF43 MUTATED RNF43 WILD-TYPE 
              9             210 
[1] "MAP2K7 MUTATION ANALYSIS"
[1] 3
  MAP2K7 MUTATED MAP2K7 WILD-TYPE 
              14              205 
  MAP2K7 MUTATED MAP2K7 WILD-TYPE 
              14              205 
[1] "WSB2 MUTATION ANALYSIS"
[1] 3
  WSB2 MUTATED WSB2 WILD-TYPE 
             7            212 
  WSB2 MUTATED WSB2 WILD-TYPE 
             7            212 
[1] "BCOR MUTATION ANALYSIS"
[1] 3
  BCOR MUTATED BCOR WILD-TYPE 
            16            203 
  BCOR MUTATED BCOR WILD-TYPE 
            16            203 
[1] "TRPS1 MUTATION ANALYSIS"
[1] 3
  TRPS1 MUTATED TRPS1 WILD-TYPE 
             30             189 
  TRPS1 MUTATED TRPS1 WILD-TYPE 
             30             189 
[1] "C13ORF33 MUTATION ANALYSIS"
[1] 3
  C13ORF33 MUTATED C13ORF33 WILD-TYPE 
                 6                213 
  C13ORF33 MUTATED C13ORF33 WILD-TYPE 
                 6                213 
[1] "HRCT1 MUTATION ANALYSIS"
[1] 3
  HRCT1 MUTATED HRCT1 WILD-TYPE 
              4             215 
  HRCT1 MUTATED HRCT1 WILD-TYPE 
              4             215 
[1] "IAPP MUTATION ANALYSIS"
[1] 3
  IAPP MUTATED IAPP WILD-TYPE 
             4            215 
  IAPP MUTATED IAPP WILD-TYPE 
             4            215 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "RADIATIONTHERAPY"                      
[14] "HISTOLOGICALTYPE"                      
[15] "RADIATIONS.RADIATION.REGIMENINDICATION"
[16] "COMPLETENESS.OF.RESECTION"             
[17] "NUMBER.OF.LYMPH.NODES"                 
[18] "BATCHNUMBER"                           

Input Data has 18 rows and 219 columns.

[1] "Batch" "18"   
[1] "Last Follow UP"
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4184 TCGA-BR-4187 TCGA-BR-4188 
         171            3           NA           NA           NA           NA 
TCGA-BR-4191 TCGA-BR-4201 TCGA-BR-4253 TCGA-BR-4255 TCGA-BR-4256 TCGA-BR-4257 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4267 TCGA-BR-4279 TCGA-BR-4280 TCGA-BR-4292 TCGA-BR-4294 TCGA-BR-4357 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4361 TCGA-BR-4362 TCGA-BR-4366 TCGA-BR-4368 TCGA-BR-4369 TCGA-BR-4370 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4371 TCGA-BR-6452 TCGA-BR-6453 TCGA-BR-6454 TCGA-BR-6455 TCGA-BR-6456 
          NA          257           NA           NA          399           NA 
TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 
         356          212          330          286           19          378 
TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 
         420           66          353           34           23           20 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7715 
           8           37           45           14            4           32 
TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 
          25           21            5          138           30           29 
TCGA-BR-7957 TCGA-BR-8059 TCGA-BR-8077 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 
          21           25           21           15           14           22 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8360 TCGA-BR-8361 TCGA-BR-8365 TCGA-BR-8366 
          47           45            6           12           90           17 
TCGA-BR-8367 TCGA-BR-8368 TCGA-BR-8370 TCGA-BR-8371 TCGA-BR-8372 TCGA-BR-8373 
          33           42           17           11           18           26 
TCGA-BR-8381 TCGA-BR-8382 TCGA-BR-8384 TCGA-BR-8484 TCGA-BR-8485 TCGA-BR-8486 
           8           13           21           21            9           30 
TCGA-BR-8588 TCGA-BR-8589 TCGA-BR-8590 TCGA-BR-8591 TCGA-BR-8676 TCGA-BR-8677 
          23           58           65            6           27           15 
TCGA-BR-8678 TCGA-BR-8679 TCGA-BR-8680 TCGA-BR-8682 TCGA-BR-8683 TCGA-BR-8687 
           5            5           24           50           18           19 
TCGA-BR-8690 TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J4 
          18           28           12           24           NA           16 
TCGA-BR-A4J6 TCGA-BR-A4J7 TCGA-BR-A4J8 TCGA-BR-A4QI TCGA-BR-A4QL TCGA-CD-5798 
           4           14            7           15           68           86 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5804 
          99          400          401            9            2           NA 
TCGA-CD-5813 TCGA-CD-8524 TCGA-CD-8525 TCGA-CD-8526 TCGA-CD-8528 TCGA-CD-8529 
          12            2            2            2            3            4 
TCGA-CD-8530 TCGA-CD-8531 TCGA-CD-8532 TCGA-CD-8534 TCGA-CD-8535 TCGA-CD-A4MI 
           5            3            3           NA            4            3 
TCGA-CD-A4MJ TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
           3           NA           92          822          485           NA 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4442 
         242          245         1644           NA           NA           NA 
TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 
         912         1431          580          366           NA           NA 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4475 TCGA-CG-4476 TCGA-CG-4477 
         576           NA           NA           NA           NA           31 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
          NA           31           31           NA          182           29 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
        2131           NA           NA          944         1980          122 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
        1674           NA           NA          376          385          363 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
         582          625          573          564          566          543 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
         406          523          312          463          486          389 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-D7-8570 TCGA-D7-8572 TCGA-D7-8573 
         321          344          374          243           26          118 
TCGA-D7-8574 TCGA-D7-8576 TCGA-D7-A4YT TCGA-D7-A4YU TCGA-D7-A4YV TCGA-D7-A4Z0 
         127           97          129          210          180          148 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 
          19          199           61           NA           12            6 
TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-HF-7132 TCGA-HF-7133 
          92          109           31           NA           NA           NA 
TCGA-HF-7136 TCGA-HJ-7597 TCGA-HU-8243 TCGA-HU-8245 TCGA-HU-8604 TCGA-HU-8610 
          NA           NA           NA          383          368           23 
TCGA-HU-A4G2 TCGA-HU-A4GD TCGA-HU-A4GN TCGA-HU-A4GP TCGA-HU-A4GQ TCGA-HU-A4GU 
         462          429          640          273           NA          190 
TCGA-HU-A4H3 TCGA-HU-A4H4 TCGA-HU-A4H5 TCGA-HU-A4H6 TCGA-IN-7806 TCGA-IN-7808 
         589          538          374          293          209          108 
TCGA-IN-8462 TCGA-IN-8663 TCGA-IP-7968 
         319           NA           77 
Variable 1:'AGE':	nDistinctValues=48,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=28,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=118,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=10,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=11,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 14:'HISTOLOGICAL.TYPE':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=31,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'BATCH.NUMBER':	nDistinctValues=17,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "NEOPLASM.DISEASESTAGE"                 
 [3] "PATHOLOGY.T.STAGE"                     
 [4] "PATHOLOGY.N.STAGE"                     
 [5] "PATHOLOGY.M.STAGE"                     
 [6] "GENDER"                                
 [7] "HISTOLOGICAL.TYPE"                     
 [8] "RADIATIONS.RADIATION.REGIMENINDICATION"
 [9] "COMPLETENESS.OF.RESECTION"             
[10] "NUMBER.OF.LYMPH.NODES"                 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 219 columns, 1 survival variables, and 10 non-survival variables.
AGE, nv=48, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=11, binary=FALSE, numeric=FALSE
PATHOLOGY.T.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
T1 T2 T3 T4 
 7 65 89 49 
[1] "table(vv)"
vv
T1 T2 T3 T4 
 7 65 89 49 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
T1 T2 T3 T4 
 7 65 89 49 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


T1 T2 T3 T4 
 7 65 89 49 
PATHOLOGY.N.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
N0 N1 N2 N3 
70 65 35 38 
[1] "table(vv)"
vv
N0 N1 N2 N3 
70 65 35 38 
$ClinVariableName
[1] "PATHOLOGY.N.STAGE"

$Table
vv
N0 N1 N2 N3 
70 65 35 38 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


N0 N1 N2 N3 
70 65 35 38 
PATHOLOGY.M.STAGE, nv=3, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=7, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE
NUMBER.OF.LYMPH.NODES, nv=31, binary=FALSE, numeric=TRUE

Clustering(1) Variable = TRIM48 MUTATION ANALYSIS
D1V1, survival
                  sevent
clus2                0   1
  TRIM48 MUTATED     7   5
  TRIM48 WILD-TYPE 152  25
  TRIM48 MUTATED TRIM48 WILD-TYPE 
              12              177 
  TRIM48 MUTATED TRIM48 WILD-TYPE 
               5               25 
$`TRIM48 MUTATED`
TCGA-BR-4184 TCGA-BR-4280 TCGA-BR-7851 TCGA-BR-8382 TCGA-CD-8526 TCGA-CG-4305 
        6.94         6.61         0.99         0.43         0.07        15.95 
TCGA-CG-4306 TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5728 TCGA-D7-A4YV TCGA-F1-6875 
        1.02        70.06        28.96        65.10         5.92        72.23 

$`TRIM48 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4201 TCGA-BR-4267 TCGA-BR-4279 
        5.62         0.10         6.61        30.90         6.15         9.57 
TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 
        8.45        13.12        11.70         6.97        10.85         9.40 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6801 
        0.62        12.43        13.81         2.17        11.61         1.12 
TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 
        0.76         0.66         0.26         1.22         1.48         0.46 
TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 
        0.13         1.05         0.82         0.69         0.16         4.54 
TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-8059 TCGA-BR-8077 TCGA-BR-8080 TCGA-BR-8081 
        0.95         0.69         0.82         0.69         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8360 TCGA-BR-8361 TCGA-BR-8365 
        0.72         1.55         1.48         0.20         0.39         2.96 
TCGA-BR-8366 TCGA-BR-8367 TCGA-BR-8368 TCGA-BR-8370 TCGA-BR-8371 TCGA-BR-8372 
        0.56         1.08         1.38         0.56         0.36         0.59 
TCGA-BR-8373 TCGA-BR-8381 TCGA-BR-8384 TCGA-BR-8484 TCGA-BR-8485 TCGA-BR-8486 
        0.85         0.26         0.69         0.69         0.30         0.99 
TCGA-BR-8588 TCGA-BR-8589 TCGA-BR-8590 TCGA-BR-8591 TCGA-BR-8676 TCGA-BR-8677 
        0.76         1.91         2.14         0.20         0.89         0.49 
TCGA-BR-8678 TCGA-BR-8679 TCGA-BR-8680 TCGA-BR-8682 TCGA-BR-8683 TCGA-BR-8687 
        0.16         0.16         0.79         1.64         0.59         0.62 
TCGA-BR-8690 TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J4 
        0.59         0.92         0.39         0.79         0.72         0.53 
TCGA-BR-A4J6 TCGA-BR-A4J7 TCGA-BR-A4J8 TCGA-BR-A4QI TCGA-BR-A4QL TCGA-CD-5798 
        0.13         0.46         0.23         0.49         2.24         2.83 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        3.25        13.15        13.18         0.30         0.07         0.39 
TCGA-CD-8524 TCGA-CD-8525 TCGA-CD-8528 TCGA-CD-8529 TCGA-CD-8530 TCGA-CD-8531 
        0.07         0.07         0.10         0.13         0.16         0.10 
TCGA-CD-8532 TCGA-CD-8535 TCGA-CD-A4MI TCGA-CD-A4MJ TCGA-CG-4300 TCGA-CG-4301 
        0.10         0.13         0.10         0.10        20.02         3.02 
TCGA-CG-4304 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 
       27.02         7.96         8.05        54.05         4.01        14.01 
TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4465 TCGA-CG-4466 
       29.98        47.05        19.07        12.03         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 
        7.07         1.02         6.94         1.02         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5724 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 
        5.98         0.95        12.03        31.04         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99        12.36        12.66        11.93        19.13 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       20.55        18.84        18.54        18.61        17.85        13.35 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
       17.19        10.26        15.22        15.98        12.79        10.55 
TCGA-D7-6820 TCGA-D7-6822 TCGA-D7-8570 TCGA-D7-8572 TCGA-D7-8573 TCGA-D7-8574 
       11.31        12.30         7.99         0.85         3.88         4.18 
TCGA-D7-8576 TCGA-D7-A4YT TCGA-D7-A4YU TCGA-D7-A4Z0 TCGA-EQ-5647 TCGA-F1-6177 
        3.19         4.24         6.90         4.87         0.62         6.54 
TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 
        2.01         0.39         0.20         3.02         3.58         1.02 
TCGA-FP-8209 TCGA-HJ-7597 TCGA-HU-8243 TCGA-HU-8245 TCGA-HU-8604 TCGA-HU-8610 
       59.05        26.43         5.92        12.59        12.10         0.76 
TCGA-HU-A4G2 TCGA-HU-A4GD TCGA-HU-A4GN TCGA-HU-A4GP TCGA-HU-A4GQ TCGA-HU-A4GU 
       15.19        14.10        21.04         8.98         0.10         6.25 
TCGA-HU-A4H3 TCGA-HU-A4H4 TCGA-HU-A4H5 TCGA-HU-A4H6 TCGA-IN-7806 TCGA-IN-7808 
       19.36        17.69        12.30         9.63         6.87         3.55 
TCGA-IN-8462 TCGA-IN-8663 TCGA-IP-7968 
       10.49         3.39         2.53 

  TRIM48 MUTATED TRIM48 WILD-TYPE 
            0.07             0.07 
  TRIM48 MUTATED TRIM48 WILD-TYPE 
           72.23            59.05 
  TRIM48 MUTATED TRIM48 WILD-TYPE 
           6.775            2.830 
[1] "0.1 - 72.2 (6.8)" "0.1 - 59.0 (2.8)"
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4183       TCGA-BR-4184 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" 
      TCGA-BR-4201       TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" 
      TCGA-BR-6452       TCGA-BR-6455       TCGA-BR-6457       TCGA-BR-6458 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6801 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7707       TCGA-BR-7715 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-7716       TCGA-BR-7717       TCGA-BR-7722       TCGA-BR-7723 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-8059 
  "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-8077       TCGA-BR-8080       TCGA-BR-8081       TCGA-BR-8284 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8360       TCGA-BR-8361 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8484 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8588       TCGA-BR-8589 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8676       TCGA-BR-8677 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A4IV 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J4 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4QI 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5813 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526       TCGA-CD-8528 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CD-8535       TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4300 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED"   "TRIM48 MUTATED" 
      TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4440 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4441       TCGA-CG-4443       TCGA-CG-4444       TCGA-CG-4449 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4455       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4477       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" 
      TCGA-CG-5724       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-8573       TCGA-D7-8574       TCGA-D7-8576       TCGA-D7-A4YT 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4Z0       TCGA-EQ-5647 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875       TCGA-FP-7735 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-FP-7829       TCGA-FP-7916       TCGA-FP-7998       TCGA-FP-8099 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-FP-8209       TCGA-HJ-7597       TCGA-HU-8243       TCGA-HU-8245 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-HU-8604       TCGA-HU-8610       TCGA-HU-A4G2       TCGA-HU-A4GD 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-HU-A4GN       TCGA-HU-A4GP       TCGA-HU-A4GQ       TCGA-HU-A4GU 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-HU-A4H3       TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-IP-7968 
"TRIM48 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4183       TCGA-BR-4184 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" 
      TCGA-BR-4201       TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" 
      TCGA-BR-6452       TCGA-BR-6455       TCGA-BR-6457       TCGA-BR-6458 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6801 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7707       TCGA-BR-7715 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-7716       TCGA-BR-7717       TCGA-BR-7722       TCGA-BR-7723 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-8059 
  "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-8077       TCGA-BR-8080       TCGA-BR-8081       TCGA-BR-8284 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8360       TCGA-BR-8361 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8484 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8588       TCGA-BR-8589 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8676       TCGA-BR-8677 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A4IV 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J4 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4QI 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5813 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526       TCGA-CD-8528 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CD-8535       TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4300 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED"   "TRIM48 MUTATED" 
      TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4440 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4441       TCGA-CG-4443       TCGA-CG-4444       TCGA-CG-4449 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4455       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4477       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" 
      TCGA-CG-5724       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-8573       TCGA-D7-8574       TCGA-D7-8576       TCGA-D7-A4YT 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4Z0       TCGA-EQ-5647 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875       TCGA-FP-7735 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-FP-7829       TCGA-FP-7916       TCGA-FP-7998       TCGA-FP-8099 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-FP-8209       TCGA-HJ-7597       TCGA-HU-8243       TCGA-HU-8245 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-HU-8604       TCGA-HU-8610       TCGA-HU-A4G2       TCGA-HU-A4GD 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-HU-A4GN       TCGA-HU-A4GP       TCGA-HU-A4GQ       TCGA-HU-A4GU 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-HU-A4H3       TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-IP-7968 
"TRIM48 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4183       TCGA-BR-4184 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" 
      TCGA-BR-4201       TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" 
      TCGA-BR-6452       TCGA-BR-6455       TCGA-BR-6457       TCGA-BR-6458 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6801 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7707       TCGA-BR-7715 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-7716       TCGA-BR-7717       TCGA-BR-7722       TCGA-BR-7723 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-8059 
  "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-8077       TCGA-BR-8080       TCGA-BR-8081       TCGA-BR-8284 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8360       TCGA-BR-8361 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8484 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8588       TCGA-BR-8589 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8676       TCGA-BR-8677 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A4IV 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J4 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4QI 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5813 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526       TCGA-CD-8528 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CD-8535       TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4300 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED"   "TRIM48 MUTATED" 
      TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4440 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4441       TCGA-CG-4443       TCGA-CG-4444       TCGA-CG-4449 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4455       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4477       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" 
      TCGA-CG-5724       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-8573       TCGA-D7-8574       TCGA-D7-8576       TCGA-D7-A4YT 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4Z0       TCGA-EQ-5647 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875       TCGA-FP-7735 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-FP-7829       TCGA-FP-7916       TCGA-FP-7998       TCGA-FP-8099 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-FP-8209       TCGA-HJ-7597       TCGA-HU-8243       TCGA-HU-8245 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-HU-8604       TCGA-HU-8610       TCGA-HU-A4G2       TCGA-HU-A4GD 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-HU-A4GN       TCGA-HU-A4GP       TCGA-HU-A4GQ       TCGA-HU-A4GU 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-HU-A4H3       TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-IP-7968 
"TRIM48 WILD-TYPE" 
[1] "hr=" "1.1"
D1V2, continuous
                  vv
clus               STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  TRIM48 MUTATED         0        2        1        3         0         2
  TRIM48 WILD-TYPE       1        5       21       21        21        26
                  vv
clus               STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  TRIM48 MUTATED           1          2          0          1        1
  TRIM48 WILD-TYPE         2         32         23         17       23
D1V3, multiclass
                  vv
clus               T1 T2 T3 T4
  TRIM48 MUTATED    2  6  4  2
  TRIM48 WILD-TYPE  5 59 85 47
D1V4, multiclass
    clus
vv   TRIM48 MUTATED TRIM48 WILD-TYPE
  T1              2                5
  T2              6               59
  T3              4               85
  T4              2               47
                  vv
clus               N0 N1 N2 N3
  TRIM48 MUTATED    4  7  1  1
  TRIM48 WILD-TYPE 66 58 34 37
D1V5, multiclass
    clus
vv   TRIM48 MUTATED TRIM48 WILD-TYPE
  N0              4               66
  N1              7               58
  N2              1               34
  N3              1               37
                  vv
clus                M0  M1  MX
  TRIM48 MUTATED    12   1   1
  TRIM48 WILD-TYPE 182  15   8
D1V6, multiclass
    clus
vv   TRIM48 MUTATED TRIM48 WILD-TYPE
  M0             12              182
  M1              1               15
  MX              1                8
D1V7, binary
                  cls
clus                 0   1
  TRIM48 MUTATED     6   8
  TRIM48 WILD-TYPE  81 124
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM48 MUTATED      6    8
  TRIM48 WILD-TYPE   81  124
        clus
vv       TRIM48 MUTATED TRIM48 WILD-TYPE
  FEMALE              6               81
  MALE                8              124
                  vv
clus               STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  TRIM48 MUTATED                                       0
  TRIM48 WILD-TYPE                                    31
                  vv
clus               STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  TRIM48 MUTATED                                                        8
  TRIM48 WILD-TYPE                                                    100
                  vv
clus               STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  TRIM48 MUTATED                                                                   4
  TRIM48 WILD-TYPE                                                                30
                  vv
clus               STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  TRIM48 MUTATED                                                  1
  TRIM48 WILD-TYPE                                               25
                  vv
clus               STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  TRIM48 MUTATED                                                          1
  TRIM48 WILD-TYPE                                                       12
                  vv
clus               STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  TRIM48 MUTATED                                                           0
  TRIM48 WILD-TYPE                                                         5
                  vv
clus               STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  TRIM48 MUTATED                                          0
  TRIM48 WILD-TYPE                                        1
D1V8, multiclass
D1V9, binary
                  cls
clus                 0   1
  TRIM48 MUTATED     1  13
  TRIM48 WILD-TYPE   5 200
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM48 MUTATED      1   13
  TRIM48 WILD-TYPE    5  200
     clus
vv    TRIM48 MUTATED TRIM48 WILD-TYPE
  NO               1                5
  YES             13              200
                  vv
clus                R0  R1  R2  RX
  TRIM48 MUTATED    10   0   1   3
  TRIM48 WILD-TYPE 161   6   9  20
D1V10, multiclass
    clus
vv   TRIM48 MUTATED TRIM48 WILD-TYPE
  R0             10              161
  R1              0                6
  R2              1                9
  RX              3               20
D1V11, continuous

Clustering(2) Variable = PIK3CA MUTATION ANALYSIS
D2V1, survival
                  sevent
clus2                0   1
  PIK3CA MUTATED    36   5
  PIK3CA WILD-TYPE 123  25
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              41              148 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
               5               25 
$`PIK3CA MUTATED`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6706 TCGA-BR-6707 
        5.62         0.10         8.45        13.12         2.17        11.61 
TCGA-BR-6802 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7851 TCGA-BR-8081 TCGA-BR-8284 
        0.76         0.26         1.22         0.99         0.46         0.72 
TCGA-BR-8366 TCGA-BR-8381 TCGA-BR-8588 TCGA-BR-8589 TCGA-BR-8591 TCGA-BR-8676 
        0.56         0.26         0.76         1.91         0.20         0.89 
TCGA-BR-8680 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-A4MI TCGA-CG-4305 TCGA-CG-5720 
        0.79        13.15        13.18         0.10        15.95         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5728 TCGA-CG-5733 TCGA-D7-5577 TCGA-D7-5578 
        5.98         0.95        65.10        21.07        12.36        12.66 
TCGA-D7-6815 TCGA-D7-A4YV TCGA-F1-6177 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 
       15.98         5.92         6.54         0.39         3.02         3.58 
TCGA-HU-A4G2 TCGA-HU-A4GQ TCGA-HU-A4GU TCGA-HU-A4H3 TCGA-HU-A4H4 
       15.19         0.10         6.25        19.36        17.69 

$`PIK3CA WILD-TYPE`
TCGA-BR-4183 TCGA-BR-4184 TCGA-BR-4201 TCGA-BR-4267 TCGA-BR-4279 TCGA-BR-4280 
        6.61         6.94        30.90         6.15         9.57         6.61 
TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 
       11.70         6.97        10.85         9.40         0.62        12.43 
TCGA-BR-6705 TCGA-BR-6801 TCGA-BR-6803 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7707 
       13.81         1.12         0.66         1.48         0.46         0.13 
TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7901 
        1.05         0.82         0.69         0.16         4.54         0.95 
TCGA-BR-7957 TCGA-BR-8059 TCGA-BR-8077 TCGA-BR-8080 TCGA-BR-8295 TCGA-BR-8296 
        0.69         0.82         0.69         0.49         1.55         1.48 
TCGA-BR-8360 TCGA-BR-8361 TCGA-BR-8365 TCGA-BR-8367 TCGA-BR-8368 TCGA-BR-8370 
        0.20         0.39         2.96         1.08         1.38         0.56 
TCGA-BR-8371 TCGA-BR-8372 TCGA-BR-8373 TCGA-BR-8382 TCGA-BR-8384 TCGA-BR-8484 
        0.36         0.59         0.85         0.43         0.69         0.69 
TCGA-BR-8485 TCGA-BR-8486 TCGA-BR-8590 TCGA-BR-8677 TCGA-BR-8678 TCGA-BR-8679 
        0.30         0.99         2.14         0.49         0.16         0.16 
TCGA-BR-8682 TCGA-BR-8683 TCGA-BR-8687 TCGA-BR-8690 TCGA-BR-A4IV TCGA-BR-A4IY 
        1.64         0.59         0.62         0.59         0.92         0.39 
TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-BR-A4J6 TCGA-BR-A4J7 TCGA-BR-A4J8 
        0.79         0.72         0.53         0.13         0.46         0.23 
TCGA-BR-A4QI TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5802 TCGA-CD-5803 
        0.49         2.24         2.83         3.25         0.30         0.07 
TCGA-CD-5813 TCGA-CD-8524 TCGA-CD-8525 TCGA-CD-8526 TCGA-CD-8528 TCGA-CD-8529 
        0.39         0.07         0.07         0.07         0.10         0.13 
TCGA-CD-8530 TCGA-CD-8531 TCGA-CD-8532 TCGA-CD-8535 TCGA-CD-A4MJ TCGA-CG-4300 
        0.16         0.10         0.10         0.13         0.10        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
        3.02        27.02         1.02         7.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
        4.01        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5717 TCGA-CG-5718 
        8.98        18.94         7.07         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5730 
        1.02        70.06        12.03        28.96        31.04         4.01 
TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
       55.04         7.99        11.93        19.13        20.55        18.84 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
       18.54        18.61        17.85        13.35        17.19        10.26 
TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-D7-8570 
       15.22        12.79        10.55        11.31        12.30         7.99 
TCGA-D7-8572 TCGA-D7-8573 TCGA-D7-8574 TCGA-D7-8576 TCGA-D7-A4YT TCGA-D7-A4YU 
        0.85         3.88         4.18         3.19         4.24         6.90 
TCGA-D7-A4Z0 TCGA-EQ-5647 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7829 TCGA-FP-8099 
        4.87         0.62         2.01        72.23         0.20         1.02 
TCGA-FP-8209 TCGA-HJ-7597 TCGA-HU-8243 TCGA-HU-8245 TCGA-HU-8604 TCGA-HU-8610 
       59.05        26.43         5.92        12.59        12.10         0.76 
TCGA-HU-A4GD TCGA-HU-A4GN TCGA-HU-A4GP TCGA-HU-A4H5 TCGA-HU-A4H6 TCGA-IN-7806 
       14.10        21.04         8.98        12.30         9.63         6.87 
TCGA-IN-7808 TCGA-IN-8462 TCGA-IN-8663 TCGA-IP-7968 
        3.55        10.49         3.39         2.53 

  PIK3CA MUTATED PIK3CA WILD-TYPE 
            0.10             0.07 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
           65.10            72.23 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
            3.02             2.99 
[1] "0.1 - 65.1 (3.0)" "0.1 - 72.2 (3.0)"
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4183       TCGA-BR-4184 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-4201       TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-6452       TCGA-BR-6455       TCGA-BR-6457       TCGA-BR-6458 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6801 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7707       TCGA-BR-7715 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-7716       TCGA-BR-7717       TCGA-BR-7722       TCGA-BR-7723 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-8059 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-8077       TCGA-BR-8080       TCGA-BR-8081       TCGA-BR-8284 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8360       TCGA-BR-8361 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8484 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8588       TCGA-BR-8589 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8676       TCGA-BR-8677 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A4IV 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J4 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4QI 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5813 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526       TCGA-CD-8528 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CD-8535       TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4300 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4440 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4441       TCGA-CG-4443       TCGA-CG-4444       TCGA-CG-4449 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4455       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4477       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723 
  "PIK3CA MUTATED"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-CG-5724       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-8573       TCGA-D7-8574       TCGA-D7-8576       TCGA-D7-A4YT 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4Z0       TCGA-EQ-5647 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875       TCGA-FP-7735 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-FP-7829       TCGA-FP-7916       TCGA-FP-7998       TCGA-FP-8099 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-FP-8209       TCGA-HJ-7597       TCGA-HU-8243       TCGA-HU-8245 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-HU-8604       TCGA-HU-8610       TCGA-HU-A4G2       TCGA-HU-A4GD 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-HU-A4GN       TCGA-HU-A4GP       TCGA-HU-A4GQ       TCGA-HU-A4GU 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-HU-A4H3       TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-IP-7968 
"PIK3CA WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4183       TCGA-BR-4184 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-4201       TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-6452       TCGA-BR-6455       TCGA-BR-6457       TCGA-BR-6458 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6801 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7707       TCGA-BR-7715 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-7716       TCGA-BR-7717       TCGA-BR-7722       TCGA-BR-7723 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-8059 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-8077       TCGA-BR-8080       TCGA-BR-8081       TCGA-BR-8284 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8360       TCGA-BR-8361 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8484 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8588       TCGA-BR-8589 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8676       TCGA-BR-8677 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A4IV 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J4 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4QI 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5813 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526       TCGA-CD-8528 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CD-8535       TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4300 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4440 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4441       TCGA-CG-4443       TCGA-CG-4444       TCGA-CG-4449 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4455       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4477       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723 
  "PIK3CA MUTATED"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-CG-5724       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-8573       TCGA-D7-8574       TCGA-D7-8576       TCGA-D7-A4YT 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4Z0       TCGA-EQ-5647 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875       TCGA-FP-7735 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-FP-7829       TCGA-FP-7916       TCGA-FP-7998       TCGA-FP-8099 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-FP-8209       TCGA-HJ-7597       TCGA-HU-8243       TCGA-HU-8245 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-HU-8604       TCGA-HU-8610       TCGA-HU-A4G2       TCGA-HU-A4GD 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-HU-A4GN       TCGA-HU-A4GP       TCGA-HU-A4GQ       TCGA-HU-A4GU 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-HU-A4H3       TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-IP-7968 
"PIK3CA WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4183       TCGA-BR-4184 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-4201       TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-6452       TCGA-BR-6455       TCGA-BR-6457       TCGA-BR-6458 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6801 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7707       TCGA-BR-7715 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-7716       TCGA-BR-7717       TCGA-BR-7722       TCGA-BR-7723 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-8059 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-8077       TCGA-BR-8080       TCGA-BR-8081       TCGA-BR-8284 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8360       TCGA-BR-8361 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8484 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8588       TCGA-BR-8589 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8676       TCGA-BR-8677 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A4IV 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J4 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4QI 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5813 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526       TCGA-CD-8528 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CD-8535       TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4300 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4440 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4441       TCGA-CG-4443       TCGA-CG-4444       TCGA-CG-4449 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4455       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4477       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723 
  "PIK3CA MUTATED"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-CG-5724       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-8573       TCGA-D7-8574       TCGA-D7-8576       TCGA-D7-A4YT 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4Z0       TCGA-EQ-5647 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875       TCGA-FP-7735 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-FP-7829       TCGA-FP-7916       TCGA-FP-7998       TCGA-FP-8099 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-FP-8209       TCGA-HJ-7597       TCGA-HU-8243       TCGA-HU-8245 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-HU-8604       TCGA-HU-8610       TCGA-HU-A4G2       TCGA-HU-A4GD 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-HU-A4GN       TCGA-HU-A4GP       TCGA-HU-A4GQ       TCGA-HU-A4GU 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-HU-A4H3       TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-IP-7968 
"PIK3CA WILD-TYPE" 
[1] "hr=" "1.2"
D2V2, continuous
                  vv
clus               STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  PIK3CA MUTATED         1        0        5        3         5        10
  PIK3CA WILD-TYPE       0        7       17       21        16        18
                  vv
clus               STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  PIK3CA MUTATED           0          9          3          6        5
  PIK3CA WILD-TYPE         3         25         20         12       19
D2V3, multiclass
                  vv
clus               T1 T2 T3 T4
  PIK3CA MUTATED    1 12 20 15
  PIK3CA WILD-TYPE  6 53 69 34
D2V4, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  T1              1                6
  T2             12               53
  T3             20               69
  T4             15               34
                  vv
clus               N0 N1 N2 N3
  PIK3CA MUTATED   16 15  9  7
  PIK3CA WILD-TYPE 54 50 26 31
D2V5, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  N0             16               54
  N1             15               50
  N2              9               26
  N3              7               31
                  vv
clus                M0  M1  MX
  PIK3CA MUTATED    40   4   4
  PIK3CA WILD-TYPE 154  12   5
D2V6, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  M0             40              154
  M1              4               12
  MX              4                5
D2V7, binary
                  cls
clus                 0   1
  PIK3CA MUTATED    20  28
  PIK3CA WILD-TYPE  67 104
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED     20   28
  PIK3CA WILD-TYPE   67  104
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  FEMALE             20               67
  MALE               28              104
                  vv
clus               STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  PIK3CA MUTATED                                       8
  PIK3CA WILD-TYPE                                    23
                  vv
clus               STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  PIK3CA MUTATED                                                       23
  PIK3CA WILD-TYPE                                                     85
                  vv
clus               STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  PIK3CA MUTATED                                                                   8
  PIK3CA WILD-TYPE                                                                26
                  vv
clus               STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  PIK3CA MUTATED                                                  7
  PIK3CA WILD-TYPE                                               19
                  vv
clus               STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  PIK3CA MUTATED                                                          1
  PIK3CA WILD-TYPE                                                       12
                  vv
clus               STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  PIK3CA MUTATED                                                           1
  PIK3CA WILD-TYPE                                                         4
                  vv
clus               STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  PIK3CA MUTATED                                          0
  PIK3CA WILD-TYPE                                        1
D2V8, multiclass
D2V9, binary
                  cls
clus                 0   1
  PIK3CA MUTATED     1  47
  PIK3CA WILD-TYPE   5 166
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED      1   47
  PIK3CA WILD-TYPE    5  166
     clus
vv    PIK3CA MUTATED PIK3CA WILD-TYPE
  NO               1                5
  YES             47              166
                  vv
clus                R0  R1  R2  RX
  PIK3CA MUTATED    41   0   2   3
  PIK3CA WILD-TYPE 130   6   8  20
D2V10, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  R0             41              130
  R1              0                6
  R2              2                8
  RX              3               20
D2V11, continuous

Clustering(3) Variable = PGM5 MUTATION ANALYSIS
D3V1, survival
                sevent
clus2              0   1
  PGM5 MUTATED    13   4
  PGM5 WILD-TYPE 146  26
  PGM5 MUTATED PGM5 WILD-TYPE 
            17            172 
  PGM5 MUTATED PGM5 WILD-TYPE 
             4             26 
$`PGM5 MUTATED`
TCGA-BR-4201 TCGA-BR-6452 TCGA-BR-7707 TCGA-BR-8081 TCGA-BR-8361 TCGA-BR-8368 
       30.90         8.45         0.13         0.46         0.39         1.38 
TCGA-BR-8382 TCGA-BR-8680 TCGA-BR-A4QL TCGA-CG-4305 TCGA-CG-5726 TCGA-CG-5728 
        0.43         0.79         2.24        15.95        28.96        65.10 
TCGA-D7-6521 TCGA-D7-A4YV TCGA-F1-6177 TCGA-HU-A4GQ TCGA-HU-A4H3 
       18.54         5.92         6.54         0.10        19.36 

$`PGM5 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4184 TCGA-BR-4267 TCGA-BR-4279 
        5.62         0.10         6.61         6.94         6.15         9.57 
TCGA-BR-4280 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 
        6.61        13.12        11.70         6.97        10.85         9.40 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6801 
        0.62        12.43        13.81         2.17        11.61         1.12 
TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 
        0.76         0.66         0.26         1.22         1.48         0.46 
TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 
        1.05         0.82         0.69         0.16         4.54         0.99 
TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-8059 TCGA-BR-8077 TCGA-BR-8080 TCGA-BR-8284 
        0.95         0.69         0.82         0.69         0.49         0.72 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8360 TCGA-BR-8365 TCGA-BR-8366 TCGA-BR-8367 
        1.55         1.48         0.20         2.96         0.56         1.08 
TCGA-BR-8370 TCGA-BR-8371 TCGA-BR-8372 TCGA-BR-8373 TCGA-BR-8381 TCGA-BR-8384 
        0.56         0.36         0.59         0.85         0.26         0.69 
TCGA-BR-8484 TCGA-BR-8485 TCGA-BR-8486 TCGA-BR-8588 TCGA-BR-8589 TCGA-BR-8590 
        0.69         0.30         0.99         0.76         1.91         2.14 
TCGA-BR-8591 TCGA-BR-8676 TCGA-BR-8677 TCGA-BR-8678 TCGA-BR-8679 TCGA-BR-8682 
        0.20         0.89         0.49         0.16         0.16         1.64 
TCGA-BR-8683 TCGA-BR-8687 TCGA-BR-8690 TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ 
        0.59         0.62         0.59         0.92         0.39         0.79 
TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-BR-A4J6 TCGA-BR-A4J7 TCGA-BR-A4J8 TCGA-BR-A4QI 
        0.72         0.53         0.13         0.46         0.23         0.49 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        2.83         3.25        13.15        13.18         0.30         0.07 
TCGA-CD-5813 TCGA-CD-8524 TCGA-CD-8525 TCGA-CD-8526 TCGA-CD-8528 TCGA-CD-8529 
        0.39         0.07         0.07         0.07         0.10         0.13 
TCGA-CD-8530 TCGA-CD-8531 TCGA-CD-8532 TCGA-CD-8535 TCGA-CD-A4MI TCGA-CD-A4MJ 
        0.16         0.10         0.10         0.13         0.10         0.10 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
       20.02         3.02        27.02         1.02         7.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5717 
       12.03         8.98        18.94         7.07         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       12.03        31.04         4.01        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
       12.36        12.66        11.93        19.13        20.55        18.84 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
       18.61        17.85        13.35        17.19        10.26        15.22 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-D7-8570 
       15.98        12.79        10.55        11.31        12.30         7.99 
TCGA-D7-8572 TCGA-D7-8573 TCGA-D7-8574 TCGA-D7-8576 TCGA-D7-A4YT TCGA-D7-A4YU 
        0.85         3.88         4.18         3.19         4.24         6.90 
TCGA-D7-A4Z0 TCGA-EQ-5647 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 
        4.87         0.62         2.01        72.23         0.39         0.20 
TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-HJ-7597 TCGA-HU-8243 
        3.02         3.58         1.02        59.05        26.43         5.92 
TCGA-HU-8245 TCGA-HU-8604 TCGA-HU-8610 TCGA-HU-A4G2 TCGA-HU-A4GD TCGA-HU-A4GN 
       12.59        12.10         0.76        15.19        14.10        21.04 
TCGA-HU-A4GP TCGA-HU-A4GU TCGA-HU-A4H4 TCGA-HU-A4H5 TCGA-HU-A4H6 TCGA-IN-7806 
        8.98         6.25        17.69        12.30         9.63         6.87 
TCGA-IN-7808 TCGA-IN-8462 TCGA-IN-8663 TCGA-IP-7968 
        3.55        10.49         3.39         2.53 

  PGM5 MUTATED PGM5 WILD-TYPE 
          0.10           0.07 
  PGM5 MUTATED PGM5 WILD-TYPE 
         65.10          72.23 
  PGM5 MUTATED PGM5 WILD-TYPE 
          5.92           2.99 
[1] "0.1 - 65.1 (5.9)" "0.1 - 72.2 (3.0)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
"PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
"PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-IP-7968 
"PGM5 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
"PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
"PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-IP-7968 
"PGM5 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
"PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
"PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-IP-7968 
"PGM5 WILD-TYPE" 
[1] "hr=" "1"  
D3V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  PGM5 MUTATED         1        2        2        2         1         2
  PGM5 WILD-TYPE       0        5       20       22        20        26
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  PGM5 MUTATED           0          1          1          4        2
  PGM5 WILD-TYPE         3         33         22         14       22
D3V3, multiclass
                vv
clus             T1 T2 T3 T4
  PGM5 MUTATED    3  7  4  6
  PGM5 WILD-TYPE  4 58 85 43
D3V4, multiclass
    clus
vv   PGM5 MUTATED PGM5 WILD-TYPE
  T1            3              4
  T2            7             58
  T3            4             85
  T4            6             43
                vv
clus             N0 N1 N2 N3
  PGM5 MUTATED    6  5  4  4
  PGM5 WILD-TYPE 64 60 31 34
D3V5, multiclass
    clus
vv   PGM5 MUTATED PGM5 WILD-TYPE
  N0            6             64
  N1            5             60
  N2            4             31
  N3            4             34
                vv
clus              M0  M1  MX
  PGM5 MUTATED    19   2   1
  PGM5 WILD-TYPE 175  14   8
D3V6, multiclass
    clus
vv   PGM5 MUTATED PGM5 WILD-TYPE
  M0           19            175
  M1            2             14
  MX            1              8
D3V7, binary
                cls
clus               0   1
  PGM5 MUTATED    15   7
  PGM5 WILD-TYPE  72 125
[1] "tbl2"
                cls
clus             [,1] [,2]
  PGM5 MUTATED     15    7
  PGM5 WILD-TYPE   72  125
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  FEMALE           15             72
  MALE              7            125
                vv
clus             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  PGM5 MUTATED                                       3
  PGM5 WILD-TYPE                                    28
                vv
clus             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  PGM5 MUTATED                                                       13
  PGM5 WILD-TYPE                                                     95
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  PGM5 MUTATED                                                                   2
  PGM5 WILD-TYPE                                                                32
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  PGM5 MUTATED                                                  3
  PGM5 WILD-TYPE                                               23
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  PGM5 MUTATED                                                          1
  PGM5 WILD-TYPE                                                       12
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  PGM5 MUTATED                                                           0
  PGM5 WILD-TYPE                                                         5
                vv
clus             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  PGM5 MUTATED                                          0
  PGM5 WILD-TYPE                                        1
D3V8, multiclass
D3V9, binary
                cls
clus               0   1
  PGM5 MUTATED     1  21
  PGM5 WILD-TYPE   5 192
[1] "tbl2"
                cls
clus             [,1] [,2]
  PGM5 MUTATED      1   21
  PGM5 WILD-TYPE    5  192
     clus
vv    PGM5 MUTATED PGM5 WILD-TYPE
  NO             1              5
  YES           21            192
                vv
clus              R0  R1  R2  RX
  PGM5 MUTATED    17   0   1   4
  PGM5 WILD-TYPE 154   6   9  19
D3V10, multiclass
    clus
vv   PGM5 MUTATED PGM5 WILD-TYPE
  R0           17            154
  R1            0              6
  R2            1              9
  RX            4             19
D3V11, continuous

Clustering(4) Variable = KRAS MUTATION ANALYSIS
D4V1, survival
                sevent
clus2              0   1
  KRAS MUTATED    18   4
  KRAS WILD-TYPE 141  26
  KRAS MUTATED KRAS WILD-TYPE 
            22            167 
  KRAS MUTATED KRAS WILD-TYPE 
             4             26 
$`KRAS MUTATED`
TCGA-BR-4184 TCGA-BR-4201 TCGA-BR-4267 TCGA-BR-4280 TCGA-BR-6705 TCGA-BR-6802 
        6.94        30.90         6.15         6.61        13.81         0.76 
TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-8059 TCGA-BR-8366 TCGA-BR-8368 TCGA-BR-8370 
        0.46         0.13         0.82         0.56         1.38         0.56 
TCGA-BR-8679 TCGA-BR-8680 TCGA-BR-8687 TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-8535 
        0.16         0.79         0.62         2.24         2.83         0.13 
TCGA-CD-A4MJ TCGA-CG-5719 TCGA-CG-5727 TCGA-HU-A4H3 
        0.10         1.02        31.04        19.36 

$`KRAS WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4279 TCGA-BR-6452 TCGA-BR-6455 
        5.62         0.10         6.61         9.57         8.45        13.12 
TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 
       11.70         6.97        10.85         9.40         0.62        12.43 
TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6801 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        2.17        11.61         1.12         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 
        1.48         1.05         0.82         0.69         0.16         4.54 
TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-8077 TCGA-BR-8080 TCGA-BR-8081 
        0.99         0.95         0.69         0.69         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8360 TCGA-BR-8361 TCGA-BR-8365 
        0.72         1.55         1.48         0.20         0.39         2.96 
TCGA-BR-8367 TCGA-BR-8371 TCGA-BR-8372 TCGA-BR-8373 TCGA-BR-8381 TCGA-BR-8382 
        1.08         0.36         0.59         0.85         0.26         0.43 
TCGA-BR-8384 TCGA-BR-8484 TCGA-BR-8485 TCGA-BR-8486 TCGA-BR-8588 TCGA-BR-8589 
        0.69         0.69         0.30         0.99         0.76         1.91 
TCGA-BR-8590 TCGA-BR-8591 TCGA-BR-8676 TCGA-BR-8677 TCGA-BR-8678 TCGA-BR-8682 
        2.14         0.20         0.89         0.49         0.16         1.64 
TCGA-BR-8683 TCGA-BR-8690 TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 
        0.59         0.59         0.92         0.39         0.79         0.72 
TCGA-BR-A4J4 TCGA-BR-A4J6 TCGA-BR-A4J7 TCGA-BR-A4J8 TCGA-BR-A4QI TCGA-CD-5799 
        0.53         0.13         0.46         0.23         0.49         3.25 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CD-8524 
       13.15        13.18         0.30         0.07         0.39         0.07 
TCGA-CD-8525 TCGA-CD-8526 TCGA-CD-8528 TCGA-CD-8529 TCGA-CD-8530 TCGA-CD-8531 
        0.07         0.07         0.10         0.13         0.16         0.10 
TCGA-CD-8532 TCGA-CD-A4MI TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 
        0.10         0.10        20.02         3.02        27.02        15.95 
TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 
        1.02         7.96         8.05        54.05         4.01        14.01 
TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4465 TCGA-CG-4466 
       29.98        47.05        19.07        12.03         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5720 TCGA-CG-5721 
        7.07         1.02         6.94         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5730 
        0.95        70.06        12.03        28.96        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99        12.36        12.66        11.93 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
       19.13        20.55        18.84        18.54        18.61        17.85 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
       13.35        17.19        10.26        15.22        15.98        12.79 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-D7-8570 TCGA-D7-8572 TCGA-D7-8573 
       10.55        11.31        12.30         7.99         0.85         3.88 
TCGA-D7-8574 TCGA-D7-8576 TCGA-D7-A4YT TCGA-D7-A4YU TCGA-D7-A4YV TCGA-D7-A4Z0 
        4.18         3.19         4.24         6.90         5.92         4.87 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 
        0.62         6.54         2.01        72.23         0.39         0.20 
TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-HJ-7597 TCGA-HU-8243 
        3.02         3.58         1.02        59.05        26.43         5.92 
TCGA-HU-8245 TCGA-HU-8604 TCGA-HU-8610 TCGA-HU-A4G2 TCGA-HU-A4GD TCGA-HU-A4GN 
       12.59        12.10         0.76        15.19        14.10        21.04 
TCGA-HU-A4GP TCGA-HU-A4GQ TCGA-HU-A4GU TCGA-HU-A4H4 TCGA-HU-A4H5 TCGA-HU-A4H6 
        8.98         0.10         6.25        17.69        12.30         9.63 
TCGA-IN-7806 TCGA-IN-7808 TCGA-IN-8462 TCGA-IN-8663 TCGA-IP-7968 
        6.87         3.55        10.49         3.39         2.53 

  KRAS MUTATED KRAS WILD-TYPE 
          0.10           0.07 
  KRAS MUTATED KRAS WILD-TYPE 
         31.04          72.23 
  KRAS MUTATED KRAS WILD-TYPE 
          0.92           3.39 
[1] "0.1 - 31.0 (0.9)" "0.1 - 72.2 (3.4)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-IP-7968 
"KRAS WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-IP-7968 
"KRAS WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-IP-7968 
"KRAS WILD-TYPE" 
[1] "hr=" "1.5"
D4V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  KRAS MUTATED         0        2        4        2         1         0
  KRAS WILD-TYPE       1        5       18       22        20        28
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  KRAS MUTATED           2          4          3          2        3
  KRAS WILD-TYPE         1         30         20         16       21
D4V3, multiclass
                vv
clus             T1 T2 T3 T4
  KRAS MUTATED    1  7  9  7
  KRAS WILD-TYPE  6 58 80 42
D4V4, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  T1            1              6
  T2            7             58
  T3            9             80
  T4            7             42
                vv
clus             N0 N1 N2 N3
  KRAS MUTATED   11  5  3  4
  KRAS WILD-TYPE 59 60 32 34
D4V5, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  N0           11             59
  N1            5             60
  N2            3             32
  N3            4             34
                vv
clus              M0  M1  MX
  KRAS MUTATED    22   2   1
  KRAS WILD-TYPE 172  14   8
D4V6, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  M0           22            172
  M1            2             14
  MX            1              8
D4V7, binary
                cls
clus               0   1
  KRAS MUTATED    15  10
  KRAS WILD-TYPE  72 122
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED     15   10
  KRAS WILD-TYPE   72  122
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  FEMALE           15             72
  MALE             10            122
                vv
clus             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  KRAS MUTATED                                       1
  KRAS WILD-TYPE                                    30
                vv
clus             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  KRAS MUTATED                                                       18
  KRAS WILD-TYPE                                                     90
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  KRAS MUTATED                                                                   3
  KRAS WILD-TYPE                                                                31
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  KRAS MUTATED                                                  1
  KRAS WILD-TYPE                                               25
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  KRAS MUTATED                                                          1
  KRAS WILD-TYPE                                                       12
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  KRAS MUTATED                                                           1
  KRAS WILD-TYPE                                                         4
                vv
clus             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  KRAS MUTATED                                          0
  KRAS WILD-TYPE                                        1
D4V8, multiclass
D4V9, binary
                cls
clus               0   1
  KRAS MUTATED     0  25
  KRAS WILD-TYPE   6 188
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED      0   25
  KRAS WILD-TYPE    6  188
     clus
vv    KRAS MUTATED KRAS WILD-TYPE
  NO             0              6
  YES           25            188
                vv
clus              R0  R1  R2  RX
  KRAS MUTATED    16   0   0   7
  KRAS WILD-TYPE 155   6  10  16
D4V10, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  R0           16            155
  R1            0              6
  R2            0             10
  RX            7             16
D4V11, continuous

Clustering(5) Variable = CBWD1 MUTATION ANALYSIS
D5V1, survival
                 sevent
clus2               0   1
  CBWD1 MUTATED    19   4
  CBWD1 WILD-TYPE 140  26
  CBWD1 MUTATED CBWD1 WILD-TYPE 
             23             166 
  CBWD1 MUTATED CBWD1 WILD-TYPE 
              4              26 
$`CBWD1 MUTATED`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6566 TCGA-BR-6852 TCGA-BR-7707 TCGA-BR-7851 
        5.62         8.45        12.43         0.26         0.13         0.99 
TCGA-BR-8361 TCGA-BR-8368 TCGA-BR-8372 TCGA-BR-8382 TCGA-BR-8591 TCGA-BR-A4QL 
        0.39         1.38         0.59         0.43         0.20         2.24 
TCGA-CD-A4MI TCGA-CD-A4MJ TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-5721 TCGA-CG-5733 
        0.10         0.10        15.95         1.02         5.98        21.07 
TCGA-D7-A4YV TCGA-F1-6874 TCGA-HJ-7597 TCGA-HU-A4GQ TCGA-HU-A4H4 
        5.92         2.01        26.43         0.10        17.69 

$`CBWD1 WILD-TYPE`
TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4184 TCGA-BR-4201 TCGA-BR-4267 TCGA-BR-4279 
        0.10         6.61         6.94        30.90         6.15         9.57 
TCGA-BR-4280 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 
        6.61        13.12        11.70         6.97        10.85         9.40 
TCGA-BR-6565 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6801 TCGA-BR-6802 
        0.62        13.81         2.17        11.61         1.12         0.76 
TCGA-BR-6803 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7715 TCGA-BR-7716 
        0.66         1.22         1.48         0.46         1.05         0.82 
TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-8059 
        0.69         0.16         4.54         0.95         0.69         0.82 
TCGA-BR-8077 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8295 TCGA-BR-8296 
        0.69         0.49         0.46         0.72         1.55         1.48 
TCGA-BR-8360 TCGA-BR-8365 TCGA-BR-8366 TCGA-BR-8367 TCGA-BR-8370 TCGA-BR-8371 
        0.20         2.96         0.56         1.08         0.56         0.36 
TCGA-BR-8373 TCGA-BR-8381 TCGA-BR-8384 TCGA-BR-8484 TCGA-BR-8485 TCGA-BR-8486 
        0.85         0.26         0.69         0.69         0.30         0.99 
TCGA-BR-8588 TCGA-BR-8589 TCGA-BR-8590 TCGA-BR-8676 TCGA-BR-8677 TCGA-BR-8678 
        0.76         1.91         2.14         0.89         0.49         0.16 
TCGA-BR-8679 TCGA-BR-8680 TCGA-BR-8682 TCGA-BR-8683 TCGA-BR-8687 TCGA-BR-8690 
        0.16         0.79         1.64         0.59         0.62         0.59 
TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-BR-A4J6 
        0.92         0.39         0.79         0.72         0.53         0.13 
TCGA-BR-A4J7 TCGA-BR-A4J8 TCGA-BR-A4QI TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 
        0.46         0.23         0.49         2.83         3.25        13.15 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CD-8524 TCGA-CD-8525 
       13.18         0.30         0.07         0.39         0.07         0.07 
TCGA-CD-8526 TCGA-CD-8528 TCGA-CD-8529 TCGA-CD-8530 TCGA-CD-8531 TCGA-CD-8532 
        0.07         0.10         0.13         0.16         0.10         0.10 
TCGA-CD-8535 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4436 TCGA-CG-4437 
        0.13        20.02         3.02        27.02         7.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5717 
       12.03         8.98        18.94         7.07         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         1.02         0.99         0.95        70.06        12.03 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 
       28.96        31.04        65.10         4.01        55.04         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
       12.36        12.66        11.93        19.13        20.55        18.84 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
       18.54        18.61        17.85        13.35        17.19        10.26 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
       15.22        15.98        12.79        10.55        11.31        12.30 
TCGA-D7-8570 TCGA-D7-8572 TCGA-D7-8573 TCGA-D7-8574 TCGA-D7-8576 TCGA-D7-A4YT 
        7.99         0.85         3.88         4.18         3.19         4.24 
TCGA-D7-A4YU TCGA-D7-A4Z0 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6875 TCGA-FP-7735 
        6.90         4.87         0.62         6.54        72.23         0.39 
TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-HU-8243 
        0.20         3.02         3.58         1.02        59.05         5.92 
TCGA-HU-8245 TCGA-HU-8604 TCGA-HU-8610 TCGA-HU-A4G2 TCGA-HU-A4GD TCGA-HU-A4GN 
       12.59        12.10         0.76        15.19        14.10        21.04 
TCGA-HU-A4GP TCGA-HU-A4GU TCGA-HU-A4H3 TCGA-HU-A4H5 TCGA-HU-A4H6 TCGA-IN-7806 
        8.98         6.25        19.36        12.30         9.63         6.87 
TCGA-IN-7808 TCGA-IN-8462 TCGA-IN-8663 TCGA-IP-7968 
        3.55        10.49         3.39         2.53 

  CBWD1 MUTATED CBWD1 WILD-TYPE 
           0.10            0.07 
  CBWD1 MUTATED CBWD1 WILD-TYPE 
          26.43           72.23 
  CBWD1 MUTATED CBWD1 WILD-TYPE 
           1.38            3.22 
[1] "0.1 - 26.4 (1.4)" "0.1 - 72.2 (3.2)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
  "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-4201      TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6452      TCGA-BR-6455      TCGA-BR-6457      TCGA-BR-6458 
  "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6801 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" 
     TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7707      TCGA-BR-7715 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-8059 
  "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-8077      TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8360      TCGA-BR-8361 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8484 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588      TCGA-BR-8589 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8676      TCGA-BR-8677 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A4IV 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J4 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4QI 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
  "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8528 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED"   "CBWD1 MUTATED" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8576      TCGA-D7-A4YT 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4Z0      TCGA-EQ-5647 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-FP-7735 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-FP-8209      TCGA-HJ-7597      TCGA-HU-8243      TCGA-HU-8245 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4GD 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ      TCGA-HU-A4GU 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-IP-7968 
"CBWD1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
  "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-4201      TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6452      TCGA-BR-6455      TCGA-BR-6457      TCGA-BR-6458 
  "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6801 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" 
     TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7707      TCGA-BR-7715 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-8059 
  "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-8077      TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8360      TCGA-BR-8361 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8484 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588      TCGA-BR-8589 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8676      TCGA-BR-8677 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A4IV 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J4 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4QI 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
  "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8528 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED"   "CBWD1 MUTATED" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8576      TCGA-D7-A4YT 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4Z0      TCGA-EQ-5647 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-FP-7735 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-FP-8209      TCGA-HJ-7597      TCGA-HU-8243      TCGA-HU-8245 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4GD 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ      TCGA-HU-A4GU 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-IP-7968 
"CBWD1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
  "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-4201      TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6452      TCGA-BR-6455      TCGA-BR-6457      TCGA-BR-6458 
  "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6801 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" 
     TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7707      TCGA-BR-7715 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-8059 
  "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-8077      TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8360      TCGA-BR-8361 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8484 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588      TCGA-BR-8589 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8676      TCGA-BR-8677 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A4IV 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J4 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4QI 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
  "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8528 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED"   "CBWD1 MUTATED" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8576      TCGA-D7-A4YT 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4Z0      TCGA-EQ-5647 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-FP-7735 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-FP-8209      TCGA-HJ-7597      TCGA-HU-8243      TCGA-HU-8245 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4GD 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ      TCGA-HU-A4GU 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-IP-7968 
"CBWD1 WILD-TYPE" 
[1] "hr=" "1.7"
D5V2, continuous
                 vv
clus              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  CBWD1 MUTATED         0        1        4        2         3         3
  CBWD1 WILD-TYPE       1        6       18       22        18        25
                 vv
clus              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  CBWD1 MUTATED           0          2          2          5        3
  CBWD1 WILD-TYPE         3         32         21         13       21
D5V3, multiclass
                 vv
clus              T1 T2 T3 T4
  CBWD1 MUTATED    1  9  7  9
  CBWD1 WILD-TYPE  6 56 82 40
D5V4, multiclass
    clus
vv   CBWD1 MUTATED CBWD1 WILD-TYPE
  T1             1               6
  T2             9              56
  T3             7              82
  T4             9              40
                 vv
clus              N0 N1 N2 N3
  CBWD1 MUTATED   10  6  6  4
  CBWD1 WILD-TYPE 60 59 29 34
D5V5, multiclass
    clus
vv   CBWD1 MUTATED CBWD1 WILD-TYPE
  N0            10              60
  N1             6              59
  N2             6              29
  N3             4              34
                 vv
clus               M0  M1  MX
  CBWD1 MUTATED    26   1   1
  CBWD1 WILD-TYPE 168  15   8
D5V6, multiclass
    clus
vv   CBWD1 MUTATED CBWD1 WILD-TYPE
  M0            26             168
  M1             1              15
  MX             1               8
D5V7, binary
                 cls
clus                0   1
  CBWD1 MUTATED    17  11
  CBWD1 WILD-TYPE  70 121
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CBWD1 MUTATED     17   11
  CBWD1 WILD-TYPE   70  121
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  FEMALE            17              70
  MALE              11             121
                 vv
clus              STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  CBWD1 MUTATED                                       1
  CBWD1 WILD-TYPE                                    30
                 vv
clus              STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  CBWD1 MUTATED                                                       18
  CBWD1 WILD-TYPE                                                     90
                 vv
clus              STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  CBWD1 MUTATED                                                                   4
  CBWD1 WILD-TYPE                                                                30
                 vv
clus              STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  CBWD1 MUTATED                                                  3
  CBWD1 WILD-TYPE                                               23
                 vv
clus              STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  CBWD1 MUTATED                                                          1
  CBWD1 WILD-TYPE                                                       12
                 vv
clus              STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  CBWD1 MUTATED                                                           0
  CBWD1 WILD-TYPE                                                         5
                 vv
clus              STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  CBWD1 MUTATED                                          1
  CBWD1 WILD-TYPE                                        0
D5V8, multiclass
D5V9, binary
                 cls
clus                0   1
  CBWD1 MUTATED     1  27
  CBWD1 WILD-TYPE   5 186
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CBWD1 MUTATED      1   27
  CBWD1 WILD-TYPE    5  186
     clus
vv    CBWD1 MUTATED CBWD1 WILD-TYPE
  NO              1               5
  YES            27             186
                 vv
clus               R0  R1  R2  RX
  CBWD1 MUTATED    21   0   1   4
  CBWD1 WILD-TYPE 150   6   9  19
D5V10, multiclass
    clus
vv   CBWD1 MUTATED CBWD1 WILD-TYPE
  R0            21             150
  R1             0               6
  R2             1               9
  RX             4              19
D5V11, continuous

Clustering(6) Variable = TP53 MUTATION ANALYSIS
D6V1, survival
                sevent
clus2             0  1
  TP53 MUTATED   76 13
  TP53 WILD-TYPE 83 17
  TP53 MUTATED TP53 WILD-TYPE 
            89            100 
  TP53 MUTATED TP53 WILD-TYPE 
            13             17 
$`TP53 MUTATED`
TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4184 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6565 
        0.10         6.61         6.94        11.70         6.97         0.62 
TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7715 TCGA-BR-7716 
        0.66         0.26         1.48         0.46         1.05         0.82 
TCGA-BR-7723 TCGA-BR-7901 TCGA-BR-8077 TCGA-BR-8080 TCGA-BR-8295 TCGA-BR-8296 
        4.54         0.95         0.69         0.49         1.55         1.48 
TCGA-BR-8360 TCGA-BR-8361 TCGA-BR-8484 TCGA-BR-8486 TCGA-BR-8590 TCGA-BR-8678 
        0.20         0.39         0.69         0.99         2.14         0.16 
TCGA-BR-8679 TCGA-BR-8682 TCGA-BR-8683 TCGA-BR-8690 TCGA-BR-A4IY TCGA-BR-A4J8 
        0.16         1.64         0.59         0.59         0.39         0.23 
TCGA-BR-A4QI TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5813 TCGA-CD-8524 TCGA-CD-8525 
        0.49         3.25        13.15         0.39         0.07         0.07 
TCGA-CD-8526 TCGA-CD-8528 TCGA-CD-8530 TCGA-CD-8531 TCGA-CD-8535 TCGA-CG-4300 
        0.07         0.10         0.16         0.10         0.13        20.02 
TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4466 
        7.96        54.05         4.01        47.05        19.07        18.94 
TCGA-CG-4469 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5726 
        7.07         6.94         1.02         5.98        70.06        28.96 
TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6520 
       31.04         4.01        55.04        12.66        19.13        18.84 
TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
       18.54        13.35        17.19        10.26        15.22        15.98 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-D7-8576 TCGA-D7-A4YU 
       12.79        10.55        11.31        12.30         3.19         6.90 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-8099 TCGA-HJ-7597 
        2.01        72.23         0.39         0.20         1.02        26.43 
TCGA-HU-8243 TCGA-HU-A4GD TCGA-HU-A4GN TCGA-HU-A4GP TCGA-HU-A4GQ TCGA-HU-A4GU 
        5.92        14.10        21.04         8.98         0.10         6.25 
TCGA-HU-A4H3 TCGA-HU-A4H4 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
       19.36        17.69         6.87         3.55         2.53 

$`TP53 WILD-TYPE`
TCGA-B7-5816 TCGA-BR-4201 TCGA-BR-4267 TCGA-BR-4279 TCGA-BR-4280 TCGA-BR-6452 
        5.62        30.90         6.15         9.57         6.61         8.45 
TCGA-BR-6455 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 
       13.12        10.85         9.40        12.43        13.81         2.17 
TCGA-BR-6707 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-7196 TCGA-BR-7707 TCGA-BR-7717 
       11.61         1.12         0.76         1.22         0.13         0.69 
TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-8059 TCGA-BR-8081 TCGA-BR-8284 
        0.16         0.99         0.69         0.82         0.46         0.72 
TCGA-BR-8365 TCGA-BR-8366 TCGA-BR-8367 TCGA-BR-8368 TCGA-BR-8370 TCGA-BR-8371 
        2.96         0.56         1.08         1.38         0.56         0.36 
TCGA-BR-8372 TCGA-BR-8373 TCGA-BR-8381 TCGA-BR-8382 TCGA-BR-8384 TCGA-BR-8485 
        0.59         0.85         0.26         0.43         0.69         0.30 
TCGA-BR-8588 TCGA-BR-8589 TCGA-BR-8591 TCGA-BR-8676 TCGA-BR-8677 TCGA-BR-8680 
        0.76         1.91         0.20         0.89         0.49         0.79 
TCGA-BR-8687 TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-BR-A4J6 
        0.62         0.92         0.79         0.72         0.53         0.13 
TCGA-BR-A4J7 TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.46         2.24         2.83        13.18         0.30         0.07 
TCGA-CD-8529 TCGA-CD-8532 TCGA-CD-A4MI TCGA-CD-A4MJ TCGA-CG-4301 TCGA-CG-4304 
        0.13         0.10         0.10         0.10         3.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4455 
       15.95         1.02         8.05        14.01        29.98        12.03 
TCGA-CG-4465 TCGA-CG-4477 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5724 
        8.98         1.02         1.02         0.99         0.95        12.03 
TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6519 
       65.10        21.07         7.99        12.36        11.93        20.55 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-8570 TCGA-D7-8572 TCGA-D7-8573 TCGA-D7-8574 
       18.61        17.85         7.99         0.85         3.88         4.18 
TCGA-D7-A4YT TCGA-D7-A4YV TCGA-D7-A4Z0 TCGA-EQ-5647 TCGA-F1-6177 TCGA-FP-7916 
        4.24         5.92         4.87         0.62         6.54         3.02 
TCGA-FP-7998 TCGA-FP-8209 TCGA-HU-8245 TCGA-HU-8604 TCGA-HU-8610 TCGA-HU-A4G2 
        3.58        59.05        12.59        12.10         0.76        15.19 
TCGA-HU-A4H5 TCGA-HU-A4H6 TCGA-IN-8462 TCGA-IN-8663 
       12.30         9.63        10.49         3.39 

  TP53 MUTATED TP53 WILD-TYPE 
          0.07           0.07 
  TP53 MUTATED TP53 WILD-TYPE 
         72.23          65.10 
  TP53 MUTATED TP53 WILD-TYPE 
         4.010          2.205 
[1] "0.1 - 72.2 (4.0)" "0.1 - 65.1 (2.2)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-IP-7968 
  "TP53 MUTATED" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-IP-7968 
  "TP53 MUTATED" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-IP-7968 
  "TP53 MUTATED" 
[1] "hr=" "1.6"
D6V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  TP53 MUTATED         0        4       10       14         8        13
  TP53 WILD-TYPE       1        3       12       10        13        15
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  TP53 MUTATED           1         19          9          8        8
  TP53 WILD-TYPE         2         15         14         10       16
D6V3, multiclass
                vv
clus             T1 T2 T3 T4
  TP53 MUTATED    4 32 42 18
  TP53 WILD-TYPE  3 33 47 31
D6V4, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  T1            4              3
  T2           32             33
  T3           42             47
  T4           18             31
                vv
clus             N0 N1 N2 N3
  TP53 MUTATED   33 31 16 15
  TP53 WILD-TYPE 37 34 19 23
D6V5, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  N0           33             37
  N1           31             34
  N2           16             19
  N3           15             23
                vv
clus              M0  M1  MX
  TP53 MUTATED    89   3   6
  TP53 WILD-TYPE 105  13   3
D6V6, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  M0           89            105
  M1            3             13
  MX            6              3
D6V7, binary
                cls
clus              0  1
  TP53 MUTATED   37 61
  TP53 WILD-TYPE 50 71
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     37   61
  TP53 WILD-TYPE   50   71
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  FEMALE           37             50
  MALE             61             71
                vv
clus             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  TP53 MUTATED                                      14
  TP53 WILD-TYPE                                    17
                vv
clus             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  TP53 MUTATED                                                       39
  TP53 WILD-TYPE                                                     69
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  TP53 MUTATED                                                                  18
  TP53 WILD-TYPE                                                                16
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  TP53 MUTATED                                                 16
  TP53 WILD-TYPE                                               10
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  TP53 MUTATED                                                          7
  TP53 WILD-TYPE                                                        6
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  TP53 MUTATED                                                           3
  TP53 WILD-TYPE                                                         2
                vv
clus             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  TP53 MUTATED                                          1
  TP53 WILD-TYPE                                        0
D6V8, multiclass
D6V9, binary
                cls
clus               0   1
  TP53 MUTATED     4  94
  TP53 WILD-TYPE   2 119
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED      4   94
  TP53 WILD-TYPE    2  119
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  NO             4              2
  YES           94            119
                vv
clus             R0 R1 R2 RX
  TP53 MUTATED   83  2  2  8
  TP53 WILD-TYPE 88  4  8 15
D6V10, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  R0           83             88
  R1            2              4
  R2            2              8
  RX            8             15
D6V11, continuous

Clustering(7) Variable = ARID1A MUTATION ANALYSIS
D7V1, survival
                  sevent
clus2                0   1
  ARID1A MUTATED    29   6
  ARID1A WILD-TYPE 130  24
  ARID1A MUTATED ARID1A WILD-TYPE 
              35              154 
  ARID1A MUTATED ARID1A WILD-TYPE 
               6               24 
$`ARID1A MUTATED`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4184 TCGA-BR-4201 TCGA-BR-6455 TCGA-BR-6707 
        5.62         0.10         6.94        30.90        13.12        11.61 
TCGA-BR-6802 TCGA-BR-7196 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-8059 TCGA-BR-8284 
        0.76         1.22         0.16         0.99         0.82         0.72 
TCGA-BR-8361 TCGA-BR-8368 TCGA-BR-8372 TCGA-BR-8381 TCGA-BR-8382 TCGA-BR-8589 
        0.39         1.38         0.59         0.26         0.43         1.91 
TCGA-BR-8677 TCGA-BR-8680 TCGA-BR-8687 TCGA-BR-A4J1 TCGA-BR-A4QL TCGA-CD-5803 
        0.49         0.79         0.62         0.72         2.24         0.07 
TCGA-CD-A4MJ TCGA-CG-4465 TCGA-CG-4469 TCGA-D7-5577 TCGA-D7-6521 TCGA-D7-6524 
        0.10         8.98         7.07        12.36        18.54        17.85 
TCGA-D7-A4YU TCGA-F1-6177 TCGA-FP-7998 TCGA-FP-8099 TCGA-HU-A4GN 
        6.90         6.54         3.58         1.02        21.04 

$`ARID1A WILD-TYPE`
TCGA-BR-4183 TCGA-BR-4267 TCGA-BR-4279 TCGA-BR-4280 TCGA-BR-6452 TCGA-BR-6457 
        6.61         6.15         9.57         6.61         8.45        11.70 
TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 
        6.97        10.85         9.40         0.62        12.43        13.81 
TCGA-BR-6706 TCGA-BR-6801 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7197 TCGA-BR-7703 
        2.17         1.12         0.66         0.26         1.48         0.46 
TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7723 TCGA-BR-7901 
        0.13         1.05         0.82         0.69         4.54         0.95 
TCGA-BR-7957 TCGA-BR-8077 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8295 TCGA-BR-8296 
        0.69         0.69         0.49         0.46         1.55         1.48 
TCGA-BR-8360 TCGA-BR-8365 TCGA-BR-8366 TCGA-BR-8367 TCGA-BR-8370 TCGA-BR-8371 
        0.20         2.96         0.56         1.08         0.56         0.36 
TCGA-BR-8373 TCGA-BR-8384 TCGA-BR-8484 TCGA-BR-8485 TCGA-BR-8486 TCGA-BR-8588 
        0.85         0.69         0.69         0.30         0.99         0.76 
TCGA-BR-8590 TCGA-BR-8591 TCGA-BR-8676 TCGA-BR-8678 TCGA-BR-8679 TCGA-BR-8682 
        2.14         0.20         0.89         0.16         0.16         1.64 
TCGA-BR-8683 TCGA-BR-8690 TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J4 
        0.59         0.59         0.92         0.39         0.79         0.53 
TCGA-BR-A4J6 TCGA-BR-A4J7 TCGA-BR-A4J8 TCGA-BR-A4QI TCGA-CD-5798 TCGA-CD-5799 
        0.13         0.46         0.23         0.49         2.83         3.25 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5813 TCGA-CD-8524 TCGA-CD-8525 
       13.15        13.18         0.30         0.39         0.07         0.07 
TCGA-CD-8526 TCGA-CD-8528 TCGA-CD-8529 TCGA-CD-8530 TCGA-CD-8531 TCGA-CD-8532 
        0.07         0.10         0.13         0.16         0.10         0.10 
TCGA-CD-8535 TCGA-CD-A4MI TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 
        0.13         0.10        20.02         3.02        27.02        15.95 
TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 
        1.02         7.96         8.05        54.05         4.01        14.01 
TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4466 TCGA-CG-4477 
       29.98        47.05        19.07        12.03        18.94         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        6.94         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       70.06        12.03        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       55.04        21.07         7.99        12.66        11.93        19.13 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
       20.55        18.84        18.61        13.35        17.19        10.26 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
       15.22        15.98        12.79        10.55        11.31        12.30 
TCGA-D7-8570 TCGA-D7-8572 TCGA-D7-8573 TCGA-D7-8574 TCGA-D7-8576 TCGA-D7-A4YT 
        7.99         0.85         3.88         4.18         3.19         4.24 
TCGA-D7-A4YV TCGA-D7-A4Z0 TCGA-EQ-5647 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 
        5.92         4.87         0.62         2.01        72.23         0.39 
TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-8209 TCGA-HJ-7597 TCGA-HU-8243 TCGA-HU-8245 
        0.20         3.02        59.05        26.43         5.92        12.59 
TCGA-HU-8604 TCGA-HU-8610 TCGA-HU-A4G2 TCGA-HU-A4GD TCGA-HU-A4GP TCGA-HU-A4GQ 
       12.10         0.76        15.19        14.10         8.98         0.10 
TCGA-HU-A4GU TCGA-HU-A4H3 TCGA-HU-A4H4 TCGA-HU-A4H5 TCGA-HU-A4H6 TCGA-IN-7806 
        6.25        19.36        17.69        12.30         9.63         6.87 
TCGA-IN-7808 TCGA-IN-8462 TCGA-IN-8663 TCGA-IP-7968 
        3.55        10.49         3.39         2.53 

  ARID1A MUTATED ARID1A WILD-TYPE 
            0.07             0.07 
  ARID1A MUTATED ARID1A WILD-TYPE 
           30.90            72.23 
  ARID1A MUTATED ARID1A WILD-TYPE 
            1.22             3.32 
[1] "0.1 - 30.9 (1.2)" "0.1 - 72.2 (3.3)"
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4183       TCGA-BR-4184 
  "ARID1A MUTATED"   "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-4201       TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-BR-6452       TCGA-BR-6455       TCGA-BR-6457       TCGA-BR-6458 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6801 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7707       TCGA-BR-7715 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-BR-7716       TCGA-BR-7717       TCGA-BR-7722       TCGA-BR-7723 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-8059 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-8077       TCGA-BR-8080       TCGA-BR-8081       TCGA-BR-8284 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8360       TCGA-BR-8361 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-8365       TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8484 
  "ARID1A MUTATED"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8588       TCGA-BR-8589 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8676       TCGA-BR-8677 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A4IV 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J4 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4QI 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5813 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526       TCGA-CD-8528 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CD-8535       TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4300 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4440 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4441       TCGA-CG-4443       TCGA-CG-4444       TCGA-CG-4449 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4455       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-CG-4477       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5724       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-8573       TCGA-D7-8574       TCGA-D7-8576       TCGA-D7-A4YT 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4Z0       TCGA-EQ-5647 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875       TCGA-FP-7735 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-FP-7829       TCGA-FP-7916       TCGA-FP-7998       TCGA-FP-8099 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED"   "ARID1A MUTATED" 
      TCGA-FP-8209       TCGA-HJ-7597       TCGA-HU-8243       TCGA-HU-8245 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-HU-8604       TCGA-HU-8610       TCGA-HU-A4G2       TCGA-HU-A4GD 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-HU-A4GN       TCGA-HU-A4GP       TCGA-HU-A4GQ       TCGA-HU-A4GU 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-HU-A4H3       TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-IP-7968 
"ARID1A WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4183       TCGA-BR-4184 
  "ARID1A MUTATED"   "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-4201       TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-BR-6452       TCGA-BR-6455       TCGA-BR-6457       TCGA-BR-6458 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6801 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7707       TCGA-BR-7715 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-BR-7716       TCGA-BR-7717       TCGA-BR-7722       TCGA-BR-7723 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-8059 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-8077       TCGA-BR-8080       TCGA-BR-8081       TCGA-BR-8284 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8360       TCGA-BR-8361 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-8365       TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8484 
  "ARID1A MUTATED"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8588       TCGA-BR-8589 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8676       TCGA-BR-8677 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A4IV 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J4 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4QI 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5813 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526       TCGA-CD-8528 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CD-8535       TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4300 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4440 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4441       TCGA-CG-4443       TCGA-CG-4444       TCGA-CG-4449 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4455       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-CG-4477       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5724       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-8573       TCGA-D7-8574       TCGA-D7-8576       TCGA-D7-A4YT 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4Z0       TCGA-EQ-5647 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875       TCGA-FP-7735 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-FP-7829       TCGA-FP-7916       TCGA-FP-7998       TCGA-FP-8099 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED"   "ARID1A MUTATED" 
      TCGA-FP-8209       TCGA-HJ-7597       TCGA-HU-8243       TCGA-HU-8245 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-HU-8604       TCGA-HU-8610       TCGA-HU-A4G2       TCGA-HU-A4GD 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-HU-A4GN       TCGA-HU-A4GP       TCGA-HU-A4GQ       TCGA-HU-A4GU 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-HU-A4H3       TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-IP-7968 
"ARID1A WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4183       TCGA-BR-4184 
  "ARID1A MUTATED"   "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-4201       TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-BR-6452       TCGA-BR-6455       TCGA-BR-6457       TCGA-BR-6458 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6801 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7707       TCGA-BR-7715 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-BR-7716       TCGA-BR-7717       TCGA-BR-7722       TCGA-BR-7723 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-8059 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-8077       TCGA-BR-8080       TCGA-BR-8081       TCGA-BR-8284 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8360       TCGA-BR-8361 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-8365       TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8484 
  "ARID1A MUTATED"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8588       TCGA-BR-8589 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8676       TCGA-BR-8677 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A4IV 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J4 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4QI 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5813 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526       TCGA-CD-8528 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CD-8535       TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4300 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4440 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4441       TCGA-CG-4443       TCGA-CG-4444       TCGA-CG-4449 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4455       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-CG-4477       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5724       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-8573       TCGA-D7-8574       TCGA-D7-8576       TCGA-D7-A4YT 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4Z0       TCGA-EQ-5647 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875       TCGA-FP-7735 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-FP-7829       TCGA-FP-7916       TCGA-FP-7998       TCGA-FP-8099 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED"   "ARID1A MUTATED" 
      TCGA-FP-8209       TCGA-HJ-7597       TCGA-HU-8243       TCGA-HU-8245 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-HU-8604       TCGA-HU-8610       TCGA-HU-A4G2       TCGA-HU-A4GD 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-HU-A4GN       TCGA-HU-A4GP       TCGA-HU-A4GQ       TCGA-HU-A4GU 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-HU-A4H3       TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-IP-7968 
"ARID1A WILD-TYPE" 
[1] "hr=" "1.7"
D7V2, continuous
                  vv
clus               STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  ARID1A MUTATED         1        0        4        2         3         4
  ARID1A WILD-TYPE       0        7       18       22        18        24
                  vv
clus               STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  ARID1A MUTATED           1          8          4          6        4
  ARID1A WILD-TYPE         2         26         19         12       20
D7V3, multiclass
                  vv
clus               T1 T2 T3 T4
  ARID1A MUTATED    2  9 14 14
  ARID1A WILD-TYPE  5 56 75 35
D7V4, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  T1              2                5
  T2              9               56
  T3             14               75
  T4             14               35
                  vv
clus               N0 N1 N2 N3
  ARID1A MUTATED   10 13  5 10
  ARID1A WILD-TYPE 60 52 30 28
D7V5, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  N0             10               60
  N1             13               52
  N2              5               30
  N3             10               28
                  vv
clus                M0  M1  MX
  ARID1A MUTATED    34   3   4
  ARID1A WILD-TYPE 160  13   5
D7V6, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  M0             34              160
  M1              3               13
  MX              4                5
D7V7, binary
                  cls
clus                 0   1
  ARID1A MUTATED    18  23
  ARID1A WILD-TYPE  69 109
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED     18   23
  ARID1A WILD-TYPE   69  109
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  FEMALE             18               69
  MALE               23              109
                  vv
clus               STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  ARID1A MUTATED                                       6
  ARID1A WILD-TYPE                                    25
                  vv
clus               STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  ARID1A MUTATED                                                       26
  ARID1A WILD-TYPE                                                     82
                  vv
clus               STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  ARID1A MUTATED                                                                   5
  ARID1A WILD-TYPE                                                                29
                  vv
clus               STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  ARID1A MUTATED                                                  4
  ARID1A WILD-TYPE                                               22
                  vv
clus               STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  ARID1A MUTATED                                                          0
  ARID1A WILD-TYPE                                                       13
                  vv
clus               STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  ARID1A MUTATED                                                           0
  ARID1A WILD-TYPE                                                         5
                  vv
clus               STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  ARID1A MUTATED                                          0
  ARID1A WILD-TYPE                                        1
D7V8, multiclass
D7V9, binary
                  cls
clus                 0   1
  ARID1A MUTATED     0  41
  ARID1A WILD-TYPE   6 172
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED      0   41
  ARID1A WILD-TYPE    6  172
     clus
vv    ARID1A MUTATED ARID1A WILD-TYPE
  NO               0                6
  YES             41              172
                  vv
clus                R0  R1  R2  RX
  ARID1A MUTATED    29   2   1   7
  ARID1A WILD-TYPE 142   4   9  16
D7V10, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  R0             29              142
  R1              2                4
  R2              1                9
  RX              7               16
D7V11, continuous

Clustering(8) Variable = SMAD4 MUTATION ANALYSIS
D8V1, survival
                 sevent
clus2               0   1
  SMAD4 MUTATED    13   5
  SMAD4 WILD-TYPE 146  25
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             18             171 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              5              25 
$`SMAD4 MUTATED`
TCGA-BR-4184 TCGA-BR-4267 TCGA-BR-4279 TCGA-BR-7722 TCGA-BR-8361 TCGA-BR-8366 
        6.94         6.15         9.57         0.16         0.39         0.56 
TCGA-BR-8372 TCGA-BR-A4J6 TCGA-CD-5799 TCGA-CD-8529 TCGA-CG-4469 TCGA-CG-5719 
        0.59         0.13         3.25         0.13         7.07         1.02 
TCGA-D7-6815 TCGA-FP-7829 TCGA-HU-8243 TCGA-HU-A4G2 TCGA-HU-A4H4 TCGA-IN-8462 
       15.98         0.20         5.92        15.19        17.69        10.49 

$`SMAD4 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4201 TCGA-BR-4280 TCGA-BR-6452 
        5.62         0.10         6.61        30.90         6.61         8.45 
TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 
       13.12        11.70         6.97        10.85         9.40         0.62 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6801 TCGA-BR-6802 
       12.43        13.81         2.17        11.61         1.12         0.76 
TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7707 
        0.66         0.26         1.22         1.48         0.46         0.13 
TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 
        1.05         0.82         0.69         4.54         0.99         0.95 
TCGA-BR-7957 TCGA-BR-8059 TCGA-BR-8077 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 
        0.69         0.82         0.69         0.49         0.46         0.72 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8360 TCGA-BR-8365 TCGA-BR-8367 TCGA-BR-8368 
        1.55         1.48         0.20         2.96         1.08         1.38 
TCGA-BR-8370 TCGA-BR-8371 TCGA-BR-8373 TCGA-BR-8381 TCGA-BR-8382 TCGA-BR-8384 
        0.56         0.36         0.85         0.26         0.43         0.69 
TCGA-BR-8484 TCGA-BR-8485 TCGA-BR-8486 TCGA-BR-8588 TCGA-BR-8589 TCGA-BR-8590 
        0.69         0.30         0.99         0.76         1.91         2.14 
TCGA-BR-8591 TCGA-BR-8676 TCGA-BR-8677 TCGA-BR-8678 TCGA-BR-8679 TCGA-BR-8680 
        0.20         0.89         0.49         0.16         0.16         0.79 
TCGA-BR-8682 TCGA-BR-8683 TCGA-BR-8687 TCGA-BR-8690 TCGA-BR-A4IV TCGA-BR-A4IY 
        1.64         0.59         0.62         0.59         0.92         0.39 
TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-BR-A4J7 TCGA-BR-A4J8 TCGA-BR-A4QI 
        0.79         0.72         0.53         0.46         0.23         0.49 
TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        2.24         2.83        13.15        13.18         0.30         0.07 
TCGA-CD-5813 TCGA-CD-8524 TCGA-CD-8525 TCGA-CD-8526 TCGA-CD-8528 TCGA-CD-8530 
        0.39         0.07         0.07         0.07         0.10         0.16 
TCGA-CD-8531 TCGA-CD-8532 TCGA-CD-8535 TCGA-CD-A4MI TCGA-CD-A4MJ TCGA-CG-4300 
        0.10         0.10         0.13         0.10         0.10        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
        3.02        27.02        15.95         1.02         7.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4477 TCGA-CG-5717 TCGA-CG-5718 
       12.03         8.98        18.94         1.02         6.94         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5726 
        0.99         5.98         0.95        70.06        12.03        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       31.04        65.10         4.01        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
       12.36        12.66        11.93        19.13        20.55        18.84 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
       18.54        18.61        17.85        13.35        17.19        10.26 
TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-D7-8570 
       15.22        12.79        10.55        11.31        12.30         7.99 
TCGA-D7-8572 TCGA-D7-8573 TCGA-D7-8574 TCGA-D7-8576 TCGA-D7-A4YT TCGA-D7-A4YU 
        0.85         3.88         4.18         3.19         4.24         6.90 
TCGA-D7-A4YV TCGA-D7-A4Z0 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 
        5.92         4.87         0.62         6.54         2.01        72.23 
TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-HJ-7597 
        0.39         3.02         3.58         1.02        59.05        26.43 
TCGA-HU-8245 TCGA-HU-8604 TCGA-HU-8610 TCGA-HU-A4GD TCGA-HU-A4GN TCGA-HU-A4GP 
       12.59        12.10         0.76        14.10        21.04         8.98 
TCGA-HU-A4GQ TCGA-HU-A4GU TCGA-HU-A4H3 TCGA-HU-A4H5 TCGA-HU-A4H6 TCGA-IN-7806 
        0.10         6.25        19.36        12.30         9.63         6.87 
TCGA-IN-7808 TCGA-IN-8663 TCGA-IP-7968 
        3.55         3.39         2.53 

  SMAD4 MUTATED SMAD4 WILD-TYPE 
           0.13            0.07 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
          17.69           72.23 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
          4.585           2.960 
[1] "0.1 - 17.7 (4.6)" "0.1 - 72.2 (3.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-BR-4201      TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-BR-6452      TCGA-BR-6455      TCGA-BR-6457      TCGA-BR-6458 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6801 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7707      TCGA-BR-7715 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-8059 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-8077      TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8360      TCGA-BR-8361 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8484 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588      TCGA-BR-8589 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8676      TCGA-BR-8677 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A4IV 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J4 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4QI 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8528 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8576      TCGA-D7-A4YT 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4Z0      TCGA-EQ-5647 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-FP-7735 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-FP-8209      TCGA-HJ-7597      TCGA-HU-8243      TCGA-HU-8245 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4GD 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ      TCGA-HU-A4GU 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-IP-7968 
"SMAD4 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-BR-4201      TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-BR-6452      TCGA-BR-6455      TCGA-BR-6457      TCGA-BR-6458 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6801 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7707      TCGA-BR-7715 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-8059 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-8077      TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8360      TCGA-BR-8361 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8484 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588      TCGA-BR-8589 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8676      TCGA-BR-8677 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A4IV 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J4 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4QI 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8528 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8576      TCGA-D7-A4YT 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4Z0      TCGA-EQ-5647 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-FP-7735 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-FP-8209      TCGA-HJ-7597      TCGA-HU-8243      TCGA-HU-8245 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4GD 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ      TCGA-HU-A4GU 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-IP-7968 
"SMAD4 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-BR-4201      TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-BR-6452      TCGA-BR-6455      TCGA-BR-6457      TCGA-BR-6458 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6801 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7707      TCGA-BR-7715 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-8059 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-8077      TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8360      TCGA-BR-8361 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8484 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588      TCGA-BR-8589 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8676      TCGA-BR-8677 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A4IV 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J4 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4QI 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8528 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8576      TCGA-D7-A4YT 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4Z0      TCGA-EQ-5647 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-FP-7735 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-FP-8209      TCGA-HJ-7597      TCGA-HU-8243      TCGA-HU-8245 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4GD 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ      TCGA-HU-A4GU 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-IP-7968 
"SMAD4 WILD-TYPE" 
[1] "hr=" "2.8"
D8V2, continuous
                 vv
clus              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  SMAD4 MUTATED         0        0        1        2         2         4
  SMAD4 WILD-TYPE       1        7       21       22        19        24
                 vv
clus              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  SMAD4 MUTATED           0          4          0          3        3
  SMAD4 WILD-TYPE         3         30         23         15       21
D8V3, multiclass
                 vv
clus              T1 T2 T3 T4
  SMAD4 MUTATED    0  6  8  5
  SMAD4 WILD-TYPE  7 59 81 44
D8V4, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  T1             0               7
  T2             6              59
  T3             8              81
  T4             5              44
                 vv
clus              N0 N1 N2 N3
  SMAD4 MUTATED    5  8  3  3
  SMAD4 WILD-TYPE 65 57 32 35
D8V5, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  N0             5              65
  N1             8              57
  N2             3              32
  N3             3              35
                 vv
clus               M0  M1  MX
  SMAD4 MUTATED    16   2   1
  SMAD4 WILD-TYPE 178  14   8
D8V6, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  M0            16             178
  M1             2              14
  MX             1               8
D8V7, binary
                 cls
clus                0   1
  SMAD4 MUTATED     6  13
  SMAD4 WILD-TYPE  81 119
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD4 MUTATED      6   13
  SMAD4 WILD-TYPE   81  119
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  FEMALE             6              81
  MALE              13             119
                 vv
clus              STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  SMAD4 MUTATED                                       1
  SMAD4 WILD-TYPE                                    30
                 vv
clus              STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  SMAD4 MUTATED                                                       10
  SMAD4 WILD-TYPE                                                     98
                 vv
clus              STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  SMAD4 MUTATED                                                                   3
  SMAD4 WILD-TYPE                                                                31
                 vv
clus              STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  SMAD4 MUTATED                                                  3
  SMAD4 WILD-TYPE                                               23
                 vv
clus              STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  SMAD4 MUTATED                                                          2
  SMAD4 WILD-TYPE                                                       11
                 vv
clus              STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  SMAD4 MUTATED                                                           0
  SMAD4 WILD-TYPE                                                         5
                 vv
clus              STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  SMAD4 MUTATED                                          0
  SMAD4 WILD-TYPE                                        1
D8V8, multiclass
D8V9, binary
                 cls
clus                0   1
  SMAD4 MUTATED     0  19
  SMAD4 WILD-TYPE   6 194
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD4 MUTATED      0   19
  SMAD4 WILD-TYPE    6  194
     clus
vv    SMAD4 MUTATED SMAD4 WILD-TYPE
  NO              0               6
  YES            19             194
                 vv
clus               R0  R1  R2  RX
  SMAD4 MUTATED    14   1   0   3
  SMAD4 WILD-TYPE 157   5  10  20
D8V10, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  R0            14             157
  R1             1               5
  R2             0              10
  RX             3              20
D8V11, continuous

Clustering(9) Variable = RHOA MUTATION ANALYSIS
D9V1, survival
                sevent
clus2              0   1
  RHOA MUTATED    10   2
  RHOA WILD-TYPE 149  28
  RHOA MUTATED RHOA WILD-TYPE 
            12            177 
  RHOA MUTATED RHOA WILD-TYPE 
             2             28 
$`RHOA MUTATED`
TCGA-BR-6563 TCGA-BR-6802 TCGA-BR-7722 TCGA-BR-8366 TCGA-BR-A4IV TCGA-CG-4465 
       10.85         0.76         0.16         0.56         0.92         8.98 
TCGA-CG-5720 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-8574 TCGA-D7-A4YU 
        0.99        18.84        18.54        18.61         4.18         6.90 

$`RHOA WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4184 TCGA-BR-4201 TCGA-BR-4267 
        5.62         0.10         6.61         6.94        30.90         6.15 
TCGA-BR-4279 TCGA-BR-4280 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        9.57         6.61         8.45        13.12        11.70         6.97 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        9.40         0.62        12.43        13.81         2.17        11.61 
TCGA-BR-6801 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 
        1.12         0.66         0.26         1.22         1.48         0.46 
TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7723 TCGA-BR-7851 
        0.13         1.05         0.82         0.69         4.54         0.99 
TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-8059 TCGA-BR-8077 TCGA-BR-8080 TCGA-BR-8081 
        0.95         0.69         0.82         0.69         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8360 TCGA-BR-8361 TCGA-BR-8365 
        0.72         1.55         1.48         0.20         0.39         2.96 
TCGA-BR-8367 TCGA-BR-8368 TCGA-BR-8370 TCGA-BR-8371 TCGA-BR-8372 TCGA-BR-8373 
        1.08         1.38         0.56         0.36         0.59         0.85 
TCGA-BR-8381 TCGA-BR-8382 TCGA-BR-8384 TCGA-BR-8484 TCGA-BR-8485 TCGA-BR-8486 
        0.26         0.43         0.69         0.69         0.30         0.99 
TCGA-BR-8588 TCGA-BR-8589 TCGA-BR-8590 TCGA-BR-8591 TCGA-BR-8676 TCGA-BR-8677 
        0.76         1.91         2.14         0.20         0.89         0.49 
TCGA-BR-8678 TCGA-BR-8679 TCGA-BR-8680 TCGA-BR-8682 TCGA-BR-8683 TCGA-BR-8687 
        0.16         0.16         0.79         1.64         0.59         0.62 
TCGA-BR-8690 TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-BR-A4J6 
        0.59         0.39         0.79         0.72         0.53         0.13 
TCGA-BR-A4J7 TCGA-BR-A4J8 TCGA-BR-A4QI TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 
        0.46         0.23         0.49         2.24         2.83         3.25 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CD-8524 
       13.15        13.18         0.30         0.07         0.39         0.07 
TCGA-CD-8525 TCGA-CD-8526 TCGA-CD-8528 TCGA-CD-8529 TCGA-CD-8530 TCGA-CD-8531 
        0.07         0.07         0.10         0.13         0.16         0.10 
TCGA-CD-8532 TCGA-CD-8535 TCGA-CD-A4MI TCGA-CD-A4MJ TCGA-CG-4300 TCGA-CG-4301 
        0.10         0.13         0.10         0.10        20.02         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
       27.02        15.95         1.02         7.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
        4.01        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
       18.94         7.07         1.02         6.94         1.02         1.02 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5727 
        5.98         0.95        70.06        12.03        28.96        31.04 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       65.10         4.01        55.04        21.07         7.99        12.36 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6524 TCGA-D7-6525 
       12.66        11.93        19.13        20.55        17.85        13.35 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
       17.19        10.26        15.22        15.98        12.79        10.55 
TCGA-D7-6820 TCGA-D7-6822 TCGA-D7-8570 TCGA-D7-8572 TCGA-D7-8573 TCGA-D7-8576 
       11.31        12.30         7.99         0.85         3.88         3.19 
TCGA-D7-A4YT TCGA-D7-A4YV TCGA-D7-A4Z0 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.24         5.92         4.87         0.62         6.54         2.01 
TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 
       72.23         0.39         0.20         3.02         3.58         1.02 
TCGA-FP-8209 TCGA-HJ-7597 TCGA-HU-8243 TCGA-HU-8245 TCGA-HU-8604 TCGA-HU-8610 
       59.05        26.43         5.92        12.59        12.10         0.76 
TCGA-HU-A4G2 TCGA-HU-A4GD TCGA-HU-A4GN TCGA-HU-A4GP TCGA-HU-A4GQ TCGA-HU-A4GU 
       15.19        14.10        21.04         8.98         0.10         6.25 
TCGA-HU-A4H3 TCGA-HU-A4H4 TCGA-HU-A4H5 TCGA-HU-A4H6 TCGA-IN-7806 TCGA-IN-7808 
       19.36        17.69        12.30         9.63         6.87         3.55 
TCGA-IN-8462 TCGA-IN-8663 TCGA-IP-7968 
       10.49         3.39         2.53 

  RHOA MUTATED RHOA WILD-TYPE 
          0.16           0.07 
  RHOA MUTATED RHOA WILD-TYPE 
         18.84          72.23 
  RHOA MUTATED RHOA WILD-TYPE 
          5.54           2.96 
[1] "0.2 - 18.8 (5.5)" "0.1 - 72.2 (3.0)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
  "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
  "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
  "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"RHOA WILD-TYPE"   "RHOA MUTATED"   "RHOA MUTATED"   "RHOA MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
  "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-IP-7968 
"RHOA WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
  "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
  "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
  "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"RHOA WILD-TYPE"   "RHOA MUTATED"   "RHOA MUTATED"   "RHOA MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
  "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-IP-7968 
"RHOA WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
  "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
  "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
  "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"RHOA WILD-TYPE"   "RHOA MUTATED"   "RHOA MUTATED"   "RHOA MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
  "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-IP-7968 
"RHOA WILD-TYPE" 
[1] "hr=" "1.2"
D9V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  RHOA MUTATED         0        0        2        0         1         2
  RHOA WILD-TYPE       1        7       20       24        20        26
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  RHOA MUTATED           0          4          2          0        1
  RHOA WILD-TYPE         3         30         21         18       23
D9V3, multiclass
                vv
clus             T1 T2 T3 T4
  RHOA MUTATED    0  5  5  2
  RHOA WILD-TYPE  7 60 84 47
D9V4, multiclass
    clus
vv   RHOA MUTATED RHOA WILD-TYPE
  T1            0              7
  T2            5             60
  T3            5             84
  T4            2             47
                vv
clus             N0 N1 N2 N3
  RHOA MUTATED    3  4  3  3
  RHOA WILD-TYPE 67 61 32 35
D9V5, multiclass
    clus
vv   RHOA MUTATED RHOA WILD-TYPE
  N0            3             67
  N1            4             61
  N2            3             32
  N3            3             35
                vv
clus              M0  M1  MX
  RHOA MUTATED    12   1   0
  RHOA WILD-TYPE 182  15   9
D9V6, multiclass
    clus
vv   RHOA MUTATED RHOA WILD-TYPE
  M0           12            182
  M1            1             15
  MX            0              9
D9V7, binary
                cls
clus               0   1
  RHOA MUTATED     4   9
  RHOA WILD-TYPE  83 123
[1] "tbl2"
                cls
clus             [,1] [,2]
  RHOA MUTATED      4    9
  RHOA WILD-TYPE   83  123
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  FEMALE            4             83
  MALE              9            123
                vv
clus             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  RHOA MUTATED                                       4
  RHOA WILD-TYPE                                    27
                vv
clus             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  RHOA MUTATED                                                        7
  RHOA WILD-TYPE                                                    101
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  RHOA MUTATED                                                                   0
  RHOA WILD-TYPE                                                                34
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  RHOA MUTATED                                                  2
  RHOA WILD-TYPE                                               24
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  RHOA MUTATED                                                          0
  RHOA WILD-TYPE                                                       13
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  RHOA MUTATED                                                           0
  RHOA WILD-TYPE                                                         5
                vv
clus             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  RHOA MUTATED                                          0
  RHOA WILD-TYPE                                        1
D9V8, multiclass
D9V9, binary
                cls
clus               0   1
  RHOA MUTATED     0  13
  RHOA WILD-TYPE   6 200
[1] "tbl2"
                cls
clus             [,1] [,2]
  RHOA MUTATED      0   13
  RHOA WILD-TYPE    6  200
     clus
vv    RHOA MUTATED RHOA WILD-TYPE
  NO             0              6
  YES           13            200
                vv
clus              R0  R1  R2  RX
  RHOA MUTATED    11   0   1   1
  RHOA WILD-TYPE 160   6   9  22
D9V10, multiclass
    clus
vv   RHOA MUTATED RHOA WILD-TYPE
  R0           11            160
  R1            0              6
  R2            1              9
  RX            1             22
D9V11, continuous

Clustering(10) Variable = MXRA8 MUTATION ANALYSIS
D10V1, survival
                 sevent
clus2               0   1
  MXRA8 MUTATED     6   3
  MXRA8 WILD-TYPE 153  27
  MXRA8 MUTATED MXRA8 WILD-TYPE 
              9             180 
  MXRA8 MUTATED MXRA8 WILD-TYPE 
              3              27 
$`MXRA8 MUTATED`
TCGA-BR-6452 TCGA-BR-8361 TCGA-BR-A4QL TCGA-CG-4465 TCGA-CG-5721 TCGA-F1-6177 
        8.45         0.39         2.24         8.98         5.98         6.54 
TCGA-HU-A4GN TCGA-HU-A4GQ TCGA-HU-A4H3 
       21.04         0.10        19.36 

$`MXRA8 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4184 TCGA-BR-4201 TCGA-BR-4267 
        5.62         0.10         6.61         6.94        30.90         6.15 
TCGA-BR-4279 TCGA-BR-4280 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 
        9.57         6.61        13.12        11.70         6.97        10.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        9.40         0.62        12.43        13.81         2.17        11.61 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        1.12         0.76         0.66         0.26         1.22         1.48 
TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 
        0.46         0.13         1.05         0.82         0.69         0.16 
TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-8059 TCGA-BR-8077 
        4.54         0.99         0.95         0.69         0.82         0.69 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8360 
        0.49         0.46         0.72         1.55         1.48         0.20 
TCGA-BR-8365 TCGA-BR-8366 TCGA-BR-8367 TCGA-BR-8368 TCGA-BR-8370 TCGA-BR-8371 
        2.96         0.56         1.08         1.38         0.56         0.36 
TCGA-BR-8372 TCGA-BR-8373 TCGA-BR-8381 TCGA-BR-8382 TCGA-BR-8384 TCGA-BR-8484 
        0.59         0.85         0.26         0.43         0.69         0.69 
TCGA-BR-8485 TCGA-BR-8486 TCGA-BR-8588 TCGA-BR-8589 TCGA-BR-8590 TCGA-BR-8591 
        0.30         0.99         0.76         1.91         2.14         0.20 
TCGA-BR-8676 TCGA-BR-8677 TCGA-BR-8678 TCGA-BR-8679 TCGA-BR-8680 TCGA-BR-8682 
        0.89         0.49         0.16         0.16         0.79         1.64 
TCGA-BR-8683 TCGA-BR-8687 TCGA-BR-8690 TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ 
        0.59         0.62         0.59         0.92         0.39         0.79 
TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-BR-A4J6 TCGA-BR-A4J7 TCGA-BR-A4J8 TCGA-BR-A4QI 
        0.72         0.53         0.13         0.46         0.23         0.49 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        2.83         3.25        13.15        13.18         0.30         0.07 
TCGA-CD-5813 TCGA-CD-8524 TCGA-CD-8525 TCGA-CD-8526 TCGA-CD-8528 TCGA-CD-8529 
        0.39         0.07         0.07         0.07         0.10         0.13 
TCGA-CD-8530 TCGA-CD-8531 TCGA-CD-8532 TCGA-CD-8535 TCGA-CD-A4MI TCGA-CD-A4MJ 
        0.16         0.10         0.10         0.13         0.10         0.10 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02         7.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5717 
       19.07        12.03        18.94         7.07         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         1.02         0.99         0.95        70.06        12.03 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99        12.36        12.66        11.93        19.13        20.55 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
       18.84        18.54        18.61        17.85        13.35        17.19 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
       10.26        15.22        15.98        12.79        10.55        11.31 
TCGA-D7-6822 TCGA-D7-8570 TCGA-D7-8572 TCGA-D7-8573 TCGA-D7-8574 TCGA-D7-8576 
       12.30         7.99         0.85         3.88         4.18         3.19 
TCGA-D7-A4YT TCGA-D7-A4YU TCGA-D7-A4YV TCGA-D7-A4Z0 TCGA-EQ-5647 TCGA-F1-6874 
        4.24         6.90         5.92         4.87         0.62         2.01 
TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 
       72.23         0.39         0.20         3.02         3.58         1.02 
TCGA-FP-8209 TCGA-HJ-7597 TCGA-HU-8243 TCGA-HU-8245 TCGA-HU-8604 TCGA-HU-8610 
       59.05        26.43         5.92        12.59        12.10         0.76 
TCGA-HU-A4G2 TCGA-HU-A4GD TCGA-HU-A4GP TCGA-HU-A4GU TCGA-HU-A4H4 TCGA-HU-A4H5 
       15.19        14.10         8.98         6.25        17.69        12.30 
TCGA-HU-A4H6 TCGA-IN-7806 TCGA-IN-7808 TCGA-IN-8462 TCGA-IN-8663 TCGA-IP-7968 
        9.63         6.87         3.55        10.49         3.39         2.53 

  MXRA8 MUTATED MXRA8 WILD-TYPE 
           0.10            0.07 
  MXRA8 MUTATED MXRA8 WILD-TYPE 
          21.04           72.23 
  MXRA8 MUTATED MXRA8 WILD-TYPE 
          6.540           2.895 
[1] "0.1 - 21.0 (6.5)" "0.1 - 72.2 (2.9)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-4201      TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-6452      TCGA-BR-6455      TCGA-BR-6457      TCGA-BR-6458 
  "MXRA8 MUTATED" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6801 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7707      TCGA-BR-7715 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-8059 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-8077      TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8360      TCGA-BR-8361 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE"   "MXRA8 MUTATED" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8484 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588      TCGA-BR-8589 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8676      TCGA-BR-8677 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A4IV 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J4 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4QI 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
  "MXRA8 MUTATED" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8528 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"MXRA8 WILD-TYPE"   "MXRA8 MUTATED" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"MXRA8 WILD-TYPE"   "MXRA8 MUTATED" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8576      TCGA-D7-A4YT 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4Z0      TCGA-EQ-5647 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-FP-7735 
  "MXRA8 MUTATED" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-FP-8209      TCGA-HJ-7597      TCGA-HU-8243      TCGA-HU-8245 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4GD 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ      TCGA-HU-A4GU 
  "MXRA8 MUTATED" "MXRA8 WILD-TYPE"   "MXRA8 MUTATED" "MXRA8 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
  "MXRA8 MUTATED" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-IP-7968 
"MXRA8 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-4201      TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-6452      TCGA-BR-6455      TCGA-BR-6457      TCGA-BR-6458 
  "MXRA8 MUTATED" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6801 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7707      TCGA-BR-7715 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-8059 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-8077      TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8360      TCGA-BR-8361 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE"   "MXRA8 MUTATED" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8484 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588      TCGA-BR-8589 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8676      TCGA-BR-8677 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A4IV 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J4 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4QI 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
  "MXRA8 MUTATED" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8528 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"MXRA8 WILD-TYPE"   "MXRA8 MUTATED" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"MXRA8 WILD-TYPE"   "MXRA8 MUTATED" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8576      TCGA-D7-A4YT 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4Z0      TCGA-EQ-5647 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-FP-7735 
  "MXRA8 MUTATED" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-FP-8209      TCGA-HJ-7597      TCGA-HU-8243      TCGA-HU-8245 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4GD 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ      TCGA-HU-A4GU 
  "MXRA8 MUTATED" "MXRA8 WILD-TYPE"   "MXRA8 MUTATED" "MXRA8 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
  "MXRA8 MUTATED" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-IP-7968 
"MXRA8 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-4201      TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-6452      TCGA-BR-6455      TCGA-BR-6457      TCGA-BR-6458 
  "MXRA8 MUTATED" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6801 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7707      TCGA-BR-7715 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-8059 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-8077      TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8360      TCGA-BR-8361 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE"   "MXRA8 MUTATED" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8484 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588      TCGA-BR-8589 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8676      TCGA-BR-8677 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A4IV 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J4 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4QI 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
  "MXRA8 MUTATED" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8528 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"MXRA8 WILD-TYPE"   "MXRA8 MUTATED" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"MXRA8 WILD-TYPE"   "MXRA8 MUTATED" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8576      TCGA-D7-A4YT 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4Z0      TCGA-EQ-5647 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-FP-7735 
  "MXRA8 MUTATED" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-FP-8209      TCGA-HJ-7597      TCGA-HU-8243      TCGA-HU-8245 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4GD 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ      TCGA-HU-A4GU 
  "MXRA8 MUTATED" "MXRA8 WILD-TYPE"   "MXRA8 MUTATED" "MXRA8 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
  "MXRA8 MUTATED" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" "MXRA8 WILD-TYPE" 
     TCGA-IP-7968 
"MXRA8 WILD-TYPE" 
[1] "hr=" "2.4"
D10V2, continuous
                 vv
clus              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  MXRA8 MUTATED         1        0        1        0         2         0
  MXRA8 WILD-TYPE       0        7       21       24        19        28
                 vv
clus              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  MXRA8 MUTATED           0          0          1          3        2
  MXRA8 WILD-TYPE         3         34         22         15       22
D10V3, multiclass
                 vv
clus              T1 T2 T3 T4
  MXRA8 MUTATED    1  2  2  5
  MXRA8 WILD-TYPE  6 63 87 44
D10V4, multiclass
    clus
vv   MXRA8 MUTATED MXRA8 WILD-TYPE
  T1             1               6
  T2             2              63
  T3             2              87
  T4             5              44
                 vv
clus              N0 N1 N2 N3
  MXRA8 MUTATED    2  3  2  3
  MXRA8 WILD-TYPE 68 62 33 35
D10V5, multiclass
    clus
vv   MXRA8 MUTATED MXRA8 WILD-TYPE
  N0             2              68
  N1             3              62
  N2             2              33
  N3             3              35
                 vv
clus               M0  M1  MX
  MXRA8 MUTATED     8   1   1
  MXRA8 WILD-TYPE 186  15   8
D10V6, multiclass
    clus
vv   MXRA8 MUTATED MXRA8 WILD-TYPE
  M0             8             186
  M1             1              15
  MX             1               8
D10V7, binary
                 cls
clus                0   1
  MXRA8 MUTATED     5   5
  MXRA8 WILD-TYPE  82 127
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MXRA8 MUTATED      5    5
  MXRA8 WILD-TYPE   82  127
        clus
vv       MXRA8 MUTATED MXRA8 WILD-TYPE
  FEMALE             5              82
  MALE               5             127
                 vv
clus              STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  MXRA8 MUTATED                                       2
  MXRA8 WILD-TYPE                                    29
                 vv
clus              STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  MXRA8 MUTATED                                                        4
  MXRA8 WILD-TYPE                                                    104
                 vv
clus              STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  MXRA8 MUTATED                                                                   2
  MXRA8 WILD-TYPE                                                                32
                 vv
clus              STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  MXRA8 MUTATED                                                  2
  MXRA8 WILD-TYPE                                               24
                 vv
clus              STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  MXRA8 MUTATED                                                          0
  MXRA8 WILD-TYPE                                                       13
                 vv
clus              STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  MXRA8 MUTATED                                                           0
  MXRA8 WILD-TYPE                                                         5
                 vv
clus              STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  MXRA8 MUTATED                                          0
  MXRA8 WILD-TYPE                                        1
D10V8, multiclass
D10V9, binary
                 cls
clus                0   1
  MXRA8 MUTATED     0  10
  MXRA8 WILD-TYPE   6 203
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MXRA8 MUTATED      0   10
  MXRA8 WILD-TYPE    6  203
     clus
vv    MXRA8 MUTATED MXRA8 WILD-TYPE
  NO              0               6
  YES            10             203
                 vv
clus               R0  R1  R2  RX
  MXRA8 MUTATED     9   0   1   0
  MXRA8 WILD-TYPE 162   6   9  23
D10V10, multiclass
    clus
vv   MXRA8 MUTATED MXRA8 WILD-TYPE
  R0             9             162
  R1             0               6
  R2             1               9
  RX             0              23
D10V11, continuous

Clustering(11) Variable = IRF2 MUTATION ANALYSIS
D11V1, survival
                sevent
clus2              0   1
  IRF2 MUTATED     9   2
  IRF2 WILD-TYPE 150  28
  IRF2 MUTATED IRF2 WILD-TYPE 
            11            178 
  IRF2 MUTATED IRF2 WILD-TYPE 
             2             28 
$`IRF2 MUTATED`
TCGA-B7-5816 TCGA-BR-4184 TCGA-BR-6452 TCGA-BR-7715 TCGA-BR-7851 TCGA-BR-8360 
        5.62         6.94         8.45         1.05         0.99         0.20 
TCGA-BR-8680 TCGA-CG-5726 TCGA-D7-6524 TCGA-HU-8245 TCGA-HU-A4H3 
        0.79        28.96        17.85        12.59        19.36 

$`IRF2 WILD-TYPE`
TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4201 TCGA-BR-4267 TCGA-BR-4279 TCGA-BR-4280 
        0.10         6.61        30.90         6.15         9.57         6.61 
TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 
       13.12        11.70         6.97        10.85         9.40         0.62 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6801 TCGA-BR-6802 
       12.43        13.81         2.17        11.61         1.12         0.76 
TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7707 
        0.66         0.26         1.22         1.48         0.46         0.13 
TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7901 TCGA-BR-7957 
        0.82         0.69         0.16         4.54         0.95         0.69 
TCGA-BR-8059 TCGA-BR-8077 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8295 
        0.82         0.69         0.49         0.46         0.72         1.55 
TCGA-BR-8296 TCGA-BR-8361 TCGA-BR-8365 TCGA-BR-8366 TCGA-BR-8367 TCGA-BR-8368 
        1.48         0.39         2.96         0.56         1.08         1.38 
TCGA-BR-8370 TCGA-BR-8371 TCGA-BR-8372 TCGA-BR-8373 TCGA-BR-8381 TCGA-BR-8382 
        0.56         0.36         0.59         0.85         0.26         0.43 
TCGA-BR-8384 TCGA-BR-8484 TCGA-BR-8485 TCGA-BR-8486 TCGA-BR-8588 TCGA-BR-8589 
        0.69         0.69         0.30         0.99         0.76         1.91 
TCGA-BR-8590 TCGA-BR-8591 TCGA-BR-8676 TCGA-BR-8677 TCGA-BR-8678 TCGA-BR-8679 
        2.14         0.20         0.89         0.49         0.16         0.16 
TCGA-BR-8682 TCGA-BR-8683 TCGA-BR-8687 TCGA-BR-8690 TCGA-BR-A4IV TCGA-BR-A4IY 
        1.64         0.59         0.62         0.59         0.92         0.39 
TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-BR-A4J6 TCGA-BR-A4J7 TCGA-BR-A4J8 
        0.79         0.72         0.53         0.13         0.46         0.23 
TCGA-BR-A4QI TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 
        0.49         2.24         2.83         3.25        13.15        13.18 
TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CD-8524 TCGA-CD-8525 TCGA-CD-8526 
        0.30         0.07         0.39         0.07         0.07         0.07 
TCGA-CD-8528 TCGA-CD-8529 TCGA-CD-8530 TCGA-CD-8531 TCGA-CD-8532 TCGA-CD-8535 
        0.10         0.13         0.16         0.10         0.10         0.13 
TCGA-CD-A4MI TCGA-CD-A4MJ TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 
        0.10         0.10        20.02         3.02        27.02        15.95 
TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 
        1.02         7.96         8.05        54.05         4.01        14.01 
TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4465 TCGA-CG-4466 
       29.98        47.05        19.07        12.03         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 
        7.07         1.02         6.94         1.02         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5727 TCGA-CG-5728 
        5.98         0.95        70.06        12.03        31.04        65.10 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 
        4.01        55.04        21.07         7.99        12.36        12.66 
TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
       11.93        19.13        20.55        18.84        18.54        18.61 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
       13.35        17.19        10.26        15.22        15.98        12.79 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-D7-8570 TCGA-D7-8572 TCGA-D7-8573 
       10.55        11.31        12.30         7.99         0.85         3.88 
TCGA-D7-8574 TCGA-D7-8576 TCGA-D7-A4YT TCGA-D7-A4YU TCGA-D7-A4YV TCGA-D7-A4Z0 
        4.18         3.19         4.24         6.90         5.92         4.87 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 
        0.62         6.54         2.01        72.23         0.39         0.20 
TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-HJ-7597 TCGA-HU-8243 
        3.02         3.58         1.02        59.05        26.43         5.92 
TCGA-HU-8604 TCGA-HU-8610 TCGA-HU-A4G2 TCGA-HU-A4GD TCGA-HU-A4GN TCGA-HU-A4GP 
       12.10         0.76        15.19        14.10        21.04         8.98 
TCGA-HU-A4GQ TCGA-HU-A4GU TCGA-HU-A4H4 TCGA-HU-A4H5 TCGA-HU-A4H6 TCGA-IN-7806 
        0.10         6.25        17.69        12.30         9.63         6.87 
TCGA-IN-7808 TCGA-IN-8462 TCGA-IN-8663 TCGA-IP-7968 
        3.55        10.49         3.39         2.53 

  IRF2 MUTATED IRF2 WILD-TYPE 
          0.20           0.07 
  IRF2 MUTATED IRF2 WILD-TYPE 
         28.96          72.23 
  IRF2 MUTATED IRF2 WILD-TYPE 
         6.940          2.895 
[1] "0.2 - 29.0 (6.9)" "0.1 - 72.2 (2.9)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
  "IRF2 MUTATED" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE"   "IRF2 MUTATED" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
  "IRF2 MUTATED" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE"   "IRF2 MUTATED" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
  "IRF2 MUTATED" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE"   "IRF2 MUTATED" "IRF2 WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE"   "IRF2 MUTATED" "IRF2 WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"IRF2 WILD-TYPE"   "IRF2 MUTATED" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
  "IRF2 MUTATED" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE"   "IRF2 MUTATED" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
  "IRF2 MUTATED" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-IP-7968 
"IRF2 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
  "IRF2 MUTATED" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE"   "IRF2 MUTATED" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
  "IRF2 MUTATED" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE"   "IRF2 MUTATED" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
  "IRF2 MUTATED" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE"   "IRF2 MUTATED" "IRF2 WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE"   "IRF2 MUTATED" "IRF2 WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"IRF2 WILD-TYPE"   "IRF2 MUTATED" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
  "IRF2 MUTATED" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE"   "IRF2 MUTATED" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
  "IRF2 MUTATED" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-IP-7968 
"IRF2 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
  "IRF2 MUTATED" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE"   "IRF2 MUTATED" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
  "IRF2 MUTATED" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE"   "IRF2 MUTATED" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
  "IRF2 MUTATED" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE"   "IRF2 MUTATED" "IRF2 WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE"   "IRF2 MUTATED" "IRF2 WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"IRF2 WILD-TYPE"   "IRF2 MUTATED" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
  "IRF2 MUTATED" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE"   "IRF2 MUTATED" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
  "IRF2 MUTATED" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-IP-7968 
"IRF2 WILD-TYPE" 
[1] "hr=" "1"  
D11V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  IRF2 MUTATED         0        1        0        1         4         1
  IRF2 WILD-TYPE       1        6       22       23        17        27
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  IRF2 MUTATED           0          2          0          1        2
  IRF2 WILD-TYPE         3         32         23         17       22
D11V3, multiclass
                vv
clus             T1 T2 T3 T4
  IRF2 MUTATED    1  1  5  5
  IRF2 WILD-TYPE  6 64 84 44
D11V4, multiclass
    clus
vv   IRF2 MUTATED IRF2 WILD-TYPE
  T1            1              6
  T2            1             64
  T3            5             84
  T4            5             44
                vv
clus             N0 N1 N2 N3
  IRF2 MUTATED    7  3  2  1
  IRF2 WILD-TYPE 63 62 33 37
D11V5, multiclass
    clus
vv   IRF2 MUTATED IRF2 WILD-TYPE
  N0            7             63
  N1            3             62
  N2            2             33
  N3            1             37
                vv
clus              M0  M1  MX
  IRF2 MUTATED    13   1   1
  IRF2 WILD-TYPE 181  15   8
D11V6, multiclass
    clus
vv   IRF2 MUTATED IRF2 WILD-TYPE
  M0           13            181
  M1            1             15
  MX            1              8
D11V7, binary
                cls
clus               0   1
  IRF2 MUTATED     7   8
  IRF2 WILD-TYPE  80 124
[1] "tbl2"
                cls
clus             [,1] [,2]
  IRF2 MUTATED      7    8
  IRF2 WILD-TYPE   80  124
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  FEMALE            7             80
  MALE              8            124
                vv
clus             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  IRF2 MUTATED                                       3
  IRF2 WILD-TYPE                                    28
                vv
clus             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  IRF2 MUTATED                                                        7
  IRF2 WILD-TYPE                                                    101
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  IRF2 MUTATED                                                                   3
  IRF2 WILD-TYPE                                                                31
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  IRF2 MUTATED                                                  1
  IRF2 WILD-TYPE                                               25
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  IRF2 MUTATED                                                          0
  IRF2 WILD-TYPE                                                       13
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  IRF2 MUTATED                                                           1
  IRF2 WILD-TYPE                                                         4
                vv
clus             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  IRF2 MUTATED                                          0
  IRF2 WILD-TYPE                                        1
D11V8, multiclass
D11V9, binary
                cls
clus               0   1
  IRF2 MUTATED     0  15
  IRF2 WILD-TYPE   6 198
[1] "tbl2"
                cls
clus             [,1] [,2]
  IRF2 MUTATED      0   15
  IRF2 WILD-TYPE    6  198
     clus
vv    IRF2 MUTATED IRF2 WILD-TYPE
  NO             0              6
  YES           15            198
                vv
clus              R0  R1  R2  RX
  IRF2 MUTATED     9   1   0   5
  IRF2 WILD-TYPE 162   5  10  18
D11V10, multiclass
    clus
vv   IRF2 MUTATED IRF2 WILD-TYPE
  R0            9            162
  R1            1              5
  R2            0             10
  RX            5             18
D11V11, continuous

Clustering(12) Variable = CDH1 MUTATION ANALYSIS
D12V1, survival
                sevent
clus2              0   1
  CDH1 MUTATED    14   1
  CDH1 WILD-TYPE 145  29
  CDH1 MUTATED CDH1 WILD-TYPE 
            15            174 
  CDH1 MUTATED CDH1 WILD-TYPE 
             1             29 
$`CDH1 MUTATED`
TCGA-BR-4279 TCGA-BR-6452 TCGA-BR-6566 TCGA-BR-6803 TCGA-BR-8370 TCGA-BR-A4IV 
        9.57         8.45        12.43         0.66         0.56         0.92 
TCGA-CD-5799 TCGA-CD-5813 TCGA-D7-6518 TCGA-D7-6522 TCGA-D7-8572 TCGA-D7-8574 
        3.25         0.39        19.13        18.61         0.85         4.18 
TCGA-D7-A4YU TCGA-F1-6874 TCGA-IN-7808 
        6.90         2.01         3.55 

$`CDH1 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4184 TCGA-BR-4201 TCGA-BR-4267 
        5.62         0.10         6.61         6.94        30.90         6.15 
TCGA-BR-4280 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 
        6.61        13.12        11.70         6.97        10.85         9.40 
TCGA-BR-6565 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6801 TCGA-BR-6802 
        0.62        13.81         2.17        11.61         1.12         0.76 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7715 
        0.26         1.22         1.48         0.46         0.13         1.05 
TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 
        0.82         0.69         0.16         4.54         0.99         0.95 
TCGA-BR-7957 TCGA-BR-8059 TCGA-BR-8077 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 
        0.69         0.82         0.69         0.49         0.46         0.72 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8360 TCGA-BR-8361 TCGA-BR-8365 TCGA-BR-8366 
        1.55         1.48         0.20         0.39         2.96         0.56 
TCGA-BR-8367 TCGA-BR-8368 TCGA-BR-8371 TCGA-BR-8372 TCGA-BR-8373 TCGA-BR-8381 
        1.08         1.38         0.36         0.59         0.85         0.26 
TCGA-BR-8382 TCGA-BR-8384 TCGA-BR-8484 TCGA-BR-8485 TCGA-BR-8486 TCGA-BR-8588 
        0.43         0.69         0.69         0.30         0.99         0.76 
TCGA-BR-8589 TCGA-BR-8590 TCGA-BR-8591 TCGA-BR-8676 TCGA-BR-8677 TCGA-BR-8678 
        1.91         2.14         0.20         0.89         0.49         0.16 
TCGA-BR-8679 TCGA-BR-8680 TCGA-BR-8682 TCGA-BR-8683 TCGA-BR-8687 TCGA-BR-8690 
        0.16         0.79         1.64         0.59         0.62         0.59 
TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-BR-A4J6 TCGA-BR-A4J7 
        0.39         0.79         0.72         0.53         0.13         0.46 
TCGA-BR-A4J8 TCGA-BR-A4QI TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5801 
        0.23         0.49         2.24         2.83        13.15        13.18 
TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-8524 TCGA-CD-8525 TCGA-CD-8526 TCGA-CD-8528 
        0.30         0.07         0.07         0.07         0.07         0.10 
TCGA-CD-8529 TCGA-CD-8530 TCGA-CD-8531 TCGA-CD-8532 TCGA-CD-8535 TCGA-CD-A4MI 
        0.13         0.16         0.10         0.10         0.13         0.10 
TCGA-CD-A4MJ TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.10        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
        7.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       47.05        19.07        12.03         8.98        18.94         7.07 
TCGA-CG-4477 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         6.94         1.02         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
        0.95        70.06        12.03        28.96        31.04        65.10 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 
        4.01        55.04        21.07         7.99        12.36        12.66 
TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6524 TCGA-D7-6525 
       11.93        20.55        18.84        18.54        17.85        13.35 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
       17.19        10.26        15.22        15.98        12.79        10.55 
TCGA-D7-6820 TCGA-D7-6822 TCGA-D7-8570 TCGA-D7-8573 TCGA-D7-8576 TCGA-D7-A4YT 
       11.31        12.30         7.99         3.88         3.19         4.24 
TCGA-D7-A4YV TCGA-D7-A4Z0 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6875 TCGA-FP-7735 
        5.92         4.87         0.62         6.54        72.23         0.39 
TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-HJ-7597 
        0.20         3.02         3.58         1.02        59.05        26.43 
TCGA-HU-8243 TCGA-HU-8245 TCGA-HU-8604 TCGA-HU-8610 TCGA-HU-A4G2 TCGA-HU-A4GD 
        5.92        12.59        12.10         0.76        15.19        14.10 
TCGA-HU-A4GN TCGA-HU-A4GP TCGA-HU-A4GQ TCGA-HU-A4GU TCGA-HU-A4H3 TCGA-HU-A4H4 
       21.04         8.98         0.10         6.25        19.36        17.69 
TCGA-HU-A4H5 TCGA-HU-A4H6 TCGA-IN-7806 TCGA-IN-8462 TCGA-IN-8663 TCGA-IP-7968 
       12.30         9.63         6.87        10.49         3.39         2.53 

  CDH1 MUTATED CDH1 WILD-TYPE 
          0.39           0.07 
  CDH1 MUTATED CDH1 WILD-TYPE 
         19.13          72.23 
  CDH1 MUTATED CDH1 WILD-TYPE 
         3.550          2.895 
[1] "0.4 - 19.1 (3.5)" "0.1 - 72.2 (2.9)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" "CDH1 WILD-TYPE" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
  "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"CDH1 WILD-TYPE"   "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
  "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" "CDH1 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"CDH1 WILD-TYPE"   "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
  "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
"CDH1 WILD-TYPE"   "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"CDH1 WILD-TYPE"   "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-IP-7968 
"CDH1 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" "CDH1 WILD-TYPE" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
  "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"CDH1 WILD-TYPE"   "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
  "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" "CDH1 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"CDH1 WILD-TYPE"   "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
  "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
"CDH1 WILD-TYPE"   "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"CDH1 WILD-TYPE"   "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-IP-7968 
"CDH1 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" "CDH1 WILD-TYPE" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
  "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"CDH1 WILD-TYPE"   "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
  "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" "CDH1 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"CDH1 WILD-TYPE"   "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
  "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
"CDH1 WILD-TYPE"   "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"CDH1 WILD-TYPE"   "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-IP-7968 
"CDH1 WILD-TYPE" 
[1] "hr=" "1.8"
D12V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  CDH1 MUTATED         0        0        2        4         2         1
  CDH1 WILD-TYPE       1        7       20       20        19        27
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  CDH1 MUTATED           1          1          3          0        2
  CDH1 WILD-TYPE         2         33         20         18       22
D12V3, multiclass
                vv
clus             T1 T2 T3 T4
  CDH1 MUTATED    1  7  7  2
  CDH1 WILD-TYPE  6 58 82 47
D12V4, multiclass
    clus
vv   CDH1 MUTATED CDH1 WILD-TYPE
  T1            1              6
  T2            7             58
  T3            7             82
  T4            2             47
                vv
clus             N0 N1 N2 N3
  CDH1 MUTATED    6  3  3  5
  CDH1 WILD-TYPE 64 62 32 33
D12V5, multiclass
    clus
vv   CDH1 MUTATED CDH1 WILD-TYPE
  N0            6             64
  N1            3             62
  N2            3             32
  N3            5             33
                vv
clus              M0  M1  MX
  CDH1 MUTATED    16   2   0
  CDH1 WILD-TYPE 178  14   9
D12V6, multiclass
    clus
vv   CDH1 MUTATED CDH1 WILD-TYPE
  M0           16            178
  M1            2             14
  MX            0              9
D12V7, binary
                cls
clus               0   1
  CDH1 MUTATED     6  12
  CDH1 WILD-TYPE  81 120
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH1 MUTATED      6   12
  CDH1 WILD-TYPE   81  120
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  FEMALE            6             81
  MALE             12            120
                vv
clus             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  CDH1 MUTATED                                       6
  CDH1 WILD-TYPE                                    25
                vv
clus             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  CDH1 MUTATED                                                        8
  CDH1 WILD-TYPE                                                    100
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  CDH1 MUTATED                                                                   2
  CDH1 WILD-TYPE                                                                32
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  CDH1 MUTATED                                                  1
  CDH1 WILD-TYPE                                               25
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  CDH1 MUTATED                                                          1
  CDH1 WILD-TYPE                                                       12
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  CDH1 MUTATED                                                           0
  CDH1 WILD-TYPE                                                         5
                vv
clus             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  CDH1 MUTATED                                          0
  CDH1 WILD-TYPE                                        1
D12V8, multiclass
D12V9, binary
                cls
clus               0   1
  CDH1 MUTATED     0  18
  CDH1 WILD-TYPE   6 195
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH1 MUTATED      0   18
  CDH1 WILD-TYPE    6  195
     clus
vv    CDH1 MUTATED CDH1 WILD-TYPE
  NO             0              6
  YES           18            195
                vv
clus              R0  R1  R2  RX
  CDH1 MUTATED    10   1   1   3
  CDH1 WILD-TYPE 161   5   9  20
D12V10, multiclass
    clus
vv   CDH1 MUTATED CDH1 WILD-TYPE
  R0           10            161
  R1            1              5
  R2            1              9
  RX            3             20
D12V11, continuous

Clustering(13) Variable = PTEN MUTATION ANALYSIS
D13V1, survival
                sevent
clus2              0   1
  PTEN MUTATED     9   2
  PTEN WILD-TYPE 150  28
  PTEN MUTATED PTEN WILD-TYPE 
            11            178 
  PTEN MUTATED PTEN WILD-TYPE 
             2             28 
$`PTEN MUTATED`
TCGA-BR-4201 TCGA-BR-4280 TCGA-BR-6452 TCGA-BR-6707 TCGA-BR-7851 TCGA-BR-8284 
       30.90         6.61         8.45        11.61         0.99         0.72 
TCGA-BR-8368 TCGA-BR-8381 TCGA-CD-8531 TCGA-D7-5577 TCGA-FP-7735 
        1.38         0.26         0.10        12.36         0.39 

$`PTEN WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4184 TCGA-BR-4267 TCGA-BR-4279 
        5.62         0.10         6.61         6.94         6.15         9.57 
TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 
       13.12        11.70         6.97        10.85         9.40         0.62 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 
       12.43        13.81         2.17         1.12         0.76         0.66 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7715 
        0.26         1.22         1.48         0.46         0.13         1.05 
TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7901 TCGA-BR-7957 
        0.82         0.69         0.16         4.54         0.95         0.69 
TCGA-BR-8059 TCGA-BR-8077 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8295 TCGA-BR-8296 
        0.82         0.69         0.49         0.46         1.55         1.48 
TCGA-BR-8360 TCGA-BR-8361 TCGA-BR-8365 TCGA-BR-8366 TCGA-BR-8367 TCGA-BR-8370 
        0.20         0.39         2.96         0.56         1.08         0.56 
TCGA-BR-8371 TCGA-BR-8372 TCGA-BR-8373 TCGA-BR-8382 TCGA-BR-8384 TCGA-BR-8484 
        0.36         0.59         0.85         0.43         0.69         0.69 
TCGA-BR-8485 TCGA-BR-8486 TCGA-BR-8588 TCGA-BR-8589 TCGA-BR-8590 TCGA-BR-8591 
        0.30         0.99         0.76         1.91         2.14         0.20 
TCGA-BR-8676 TCGA-BR-8677 TCGA-BR-8678 TCGA-BR-8679 TCGA-BR-8680 TCGA-BR-8682 
        0.89         0.49         0.16         0.16         0.79         1.64 
TCGA-BR-8683 TCGA-BR-8687 TCGA-BR-8690 TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ 
        0.59         0.62         0.59         0.92         0.39         0.79 
TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-BR-A4J6 TCGA-BR-A4J7 TCGA-BR-A4J8 TCGA-BR-A4QI 
        0.72         0.53         0.13         0.46         0.23         0.49 
TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 
        2.24         2.83         3.25        13.15        13.18         0.30 
TCGA-CD-5803 TCGA-CD-5813 TCGA-CD-8524 TCGA-CD-8525 TCGA-CD-8526 TCGA-CD-8528 
        0.07         0.39         0.07         0.07         0.07         0.10 
TCGA-CD-8529 TCGA-CD-8530 TCGA-CD-8532 TCGA-CD-8535 TCGA-CD-A4MI TCGA-CD-A4MJ 
        0.13         0.16         0.10         0.13         0.10         0.10 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02         7.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4477 
       19.07        12.03         8.98        18.94         7.07         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        6.94         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       70.06        12.03        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       55.04        21.07         7.99        12.66        11.93        19.13 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       20.55        18.84        18.54        18.61        17.85        13.35 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
       17.19        10.26        15.22        15.98        12.79        10.55 
TCGA-D7-6820 TCGA-D7-6822 TCGA-D7-8570 TCGA-D7-8572 TCGA-D7-8573 TCGA-D7-8574 
       11.31        12.30         7.99         0.85         3.88         4.18 
TCGA-D7-8576 TCGA-D7-A4YT TCGA-D7-A4YU TCGA-D7-A4YV TCGA-D7-A4Z0 TCGA-EQ-5647 
        3.19         4.24         6.90         5.92         4.87         0.62 
TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 
        6.54         2.01        72.23         0.20         3.02         3.58 
TCGA-FP-8099 TCGA-FP-8209 TCGA-HJ-7597 TCGA-HU-8243 TCGA-HU-8245 TCGA-HU-8604 
        1.02        59.05        26.43         5.92        12.59        12.10 
TCGA-HU-8610 TCGA-HU-A4G2 TCGA-HU-A4GD TCGA-HU-A4GN TCGA-HU-A4GP TCGA-HU-A4GQ 
        0.76        15.19        14.10        21.04         8.98         0.10 
TCGA-HU-A4GU TCGA-HU-A4H3 TCGA-HU-A4H4 TCGA-HU-A4H5 TCGA-HU-A4H6 TCGA-IN-7806 
        6.25        19.36        17.69        12.30         9.63         6.87 
TCGA-IN-7808 TCGA-IN-8462 TCGA-IN-8663 TCGA-IP-7968 
        3.55        10.49         3.39         2.53 

  PTEN MUTATED PTEN WILD-TYPE 
          0.10           0.07 
  PTEN MUTATED PTEN WILD-TYPE 
         30.90          72.23 
  PTEN MUTATED PTEN WILD-TYPE 
          1.38           3.02 
[1] "0.1 - 30.9 (1.4)" "0.1 - 72.2 (3.0)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-IP-7968 
"PTEN WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-IP-7968 
"PTEN WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-IP-7968 
"PTEN WILD-TYPE" 
[1] "hr=" "1.2"
D13V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  PTEN MUTATED         0        0        2        0         2         2
  PTEN WILD-TYPE       1        7       20       24        19        26
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  PTEN MUTATED           1          3          0          1        0
  PTEN WILD-TYPE         2         31         23         17       24
D13V3, multiclass
                vv
clus             T1 T2 T3 T4
  PTEN MUTATED    0  5  5  2
  PTEN WILD-TYPE  7 60 84 47
D13V4, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  T1            0              7
  T2            5             60
  T3            5             84
  T4            2             47
                vv
clus             N0 N1 N2 N3
  PTEN MUTATED    5  5  0  2
  PTEN WILD-TYPE 65 60 35 36
D13V5, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  N0            5             65
  N1            5             60
  N2            0             35
  N3            2             36
                vv
clus              M0  M1  MX
  PTEN MUTATED    13   0   1
  PTEN WILD-TYPE 181  16   8
D13V6, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  M0           13            181
  M1            0             16
  MX            1              8
D13V7, binary
                cls
clus               0   1
  PTEN MUTATED    10   4
  PTEN WILD-TYPE  77 128
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED     10    4
  PTEN WILD-TYPE   77  128
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  FEMALE           10             77
  MALE              4            128
                vv
clus             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  PTEN MUTATED                                       1
  PTEN WILD-TYPE                                    30
                vv
clus             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  PTEN MUTATED                                                       10
  PTEN WILD-TYPE                                                     98
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  PTEN MUTATED                                                                   2
  PTEN WILD-TYPE                                                                32
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  PTEN MUTATED                                                  1
  PTEN WILD-TYPE                                               25
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  PTEN MUTATED                                                          0
  PTEN WILD-TYPE                                                       13
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  PTEN MUTATED                                                           0
  PTEN WILD-TYPE                                                         5
                vv
clus             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  PTEN MUTATED                                          0
  PTEN WILD-TYPE                                        1
D13V8, multiclass
D13V9, binary
                cls
clus               0   1
  PTEN MUTATED     0  14
  PTEN WILD-TYPE   6 199
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED      0   14
  PTEN WILD-TYPE    6  199
     clus
vv    PTEN MUTATED PTEN WILD-TYPE
  NO             0              6
  YES           14            199
                vv
clus              R0  R1  R2  RX
  PTEN MUTATED     9   0   0   5
  PTEN WILD-TYPE 162   6  10  18
D13V10, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  R0            9            162
  R1            0              6
  R2            0             10
  RX            5             18
D13V11, continuous

Clustering(14) Variable = FBXW7 MUTATION ANALYSIS
D14V1, survival
                 sevent
clus2               0   1
  FBXW7 MUTATED    13   2
  FBXW7 WILD-TYPE 146  28
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             15             174 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
              2              28 
$`FBXW7 MUTATED`
TCGA-BR-4201 TCGA-BR-6852 TCGA-BR-7851 TCGA-BR-8360 TCGA-BR-8361 TCGA-BR-8372 
       30.90         0.26         0.99         0.20         0.39         0.59 
TCGA-BR-8485 TCGA-BR-8678 TCGA-BR-8680 TCGA-BR-A4QL TCGA-CD-A4MJ TCGA-CG-5721 
        0.30         0.16         0.79         2.24         0.10         5.98 
TCGA-CG-5723 TCGA-CG-5733 TCGA-HU-A4GN 
       70.06        21.07        21.04 

$`FBXW7 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4184 TCGA-BR-4267 TCGA-BR-4279 
        5.62         0.10         6.61         6.94         6.15         9.57 
TCGA-BR-4280 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 
        6.61         8.45        13.12        11.70         6.97        10.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        9.40         0.62        12.43        13.81         2.17        11.61 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 
        1.12         0.76         0.66         1.22         1.48         0.46 
TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 
        0.13         1.05         0.82         0.69         0.16         4.54 
TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-8059 TCGA-BR-8077 TCGA-BR-8080 TCGA-BR-8081 
        0.95         0.69         0.82         0.69         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8365 TCGA-BR-8366 TCGA-BR-8367 
        0.72         1.55         1.48         2.96         0.56         1.08 
TCGA-BR-8368 TCGA-BR-8370 TCGA-BR-8371 TCGA-BR-8373 TCGA-BR-8381 TCGA-BR-8382 
        1.38         0.56         0.36         0.85         0.26         0.43 
TCGA-BR-8384 TCGA-BR-8484 TCGA-BR-8486 TCGA-BR-8588 TCGA-BR-8589 TCGA-BR-8590 
        0.69         0.69         0.99         0.76         1.91         2.14 
TCGA-BR-8591 TCGA-BR-8676 TCGA-BR-8677 TCGA-BR-8679 TCGA-BR-8682 TCGA-BR-8683 
        0.20         0.89         0.49         0.16         1.64         0.59 
TCGA-BR-8687 TCGA-BR-8690 TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 
        0.62         0.59         0.92         0.39         0.79         0.72 
TCGA-BR-A4J4 TCGA-BR-A4J6 TCGA-BR-A4J7 TCGA-BR-A4J8 TCGA-BR-A4QI TCGA-CD-5798 
        0.53         0.13         0.46         0.23         0.49         2.83 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        3.25        13.15        13.18         0.30         0.07         0.39 
TCGA-CD-8524 TCGA-CD-8525 TCGA-CD-8526 TCGA-CD-8528 TCGA-CD-8529 TCGA-CD-8530 
        0.07         0.07         0.07         0.10         0.13         0.16 
TCGA-CD-8531 TCGA-CD-8532 TCGA-CD-8535 TCGA-CD-A4MI TCGA-CG-4300 TCGA-CG-4301 
        0.10         0.10         0.13         0.10        20.02         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
       27.02        15.95         1.02         7.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
        4.01        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5717 TCGA-CG-5718 
        8.98        18.94         7.07         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5727 
        1.02         0.99         0.95        12.03        28.96        31.04 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 
       65.10         4.01        55.04         7.99        12.36        12.66 
TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
       11.93        19.13        20.55        18.84        18.54        18.61 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
       17.85        13.35        17.19        10.26        15.22        15.98 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-D7-8570 TCGA-D7-8572 
       12.79        10.55        11.31        12.30         7.99         0.85 
TCGA-D7-8573 TCGA-D7-8574 TCGA-D7-8576 TCGA-D7-A4YT TCGA-D7-A4YU TCGA-D7-A4YV 
        3.88         4.18         3.19         4.24         6.90         5.92 
TCGA-D7-A4Z0 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 
        4.87         0.62         6.54         2.01        72.23         0.39 
TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-HJ-7597 
        0.20         3.02         3.58         1.02        59.05        26.43 
TCGA-HU-8243 TCGA-HU-8245 TCGA-HU-8604 TCGA-HU-8610 TCGA-HU-A4G2 TCGA-HU-A4GD 
        5.92        12.59        12.10         0.76        15.19        14.10 
TCGA-HU-A4GP TCGA-HU-A4GQ TCGA-HU-A4GU TCGA-HU-A4H3 TCGA-HU-A4H4 TCGA-HU-A4H5 
        8.98         0.10         6.25        19.36        17.69        12.30 
TCGA-HU-A4H6 TCGA-IN-7806 TCGA-IN-7808 TCGA-IN-8462 TCGA-IN-8663 TCGA-IP-7968 
        9.63         6.87         3.55        10.49         3.39         2.53 

  FBXW7 MUTATED FBXW7 WILD-TYPE 
           0.10            0.07 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
          70.06           72.23 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
           0.79            3.22 
[1] "0.1 - 70.1 (0.8)" "0.1 - 72.2 (3.2)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-4201      TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-6452      TCGA-BR-6455      TCGA-BR-6457      TCGA-BR-6458 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6801 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7707      TCGA-BR-7715 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-8059 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-8077      TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8360      TCGA-BR-8361 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED"   "FBXW7 MUTATED" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8484 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588      TCGA-BR-8589 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8676      TCGA-BR-8677 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A4IV 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J4 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4QI 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8528 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8576      TCGA-D7-A4YT 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4Z0      TCGA-EQ-5647 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-FP-7735 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-FP-8209      TCGA-HJ-7597      TCGA-HU-8243      TCGA-HU-8245 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4GD 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ      TCGA-HU-A4GU 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-IP-7968 
"FBXW7 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-4201      TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-6452      TCGA-BR-6455      TCGA-BR-6457      TCGA-BR-6458 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6801 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7707      TCGA-BR-7715 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-8059 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-8077      TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8360      TCGA-BR-8361 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED"   "FBXW7 MUTATED" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8484 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588      TCGA-BR-8589 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8676      TCGA-BR-8677 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A4IV 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J4 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4QI 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8528 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8576      TCGA-D7-A4YT 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4Z0      TCGA-EQ-5647 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-FP-7735 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-FP-8209      TCGA-HJ-7597      TCGA-HU-8243      TCGA-HU-8245 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4GD 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ      TCGA-HU-A4GU 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-IP-7968 
"FBXW7 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-4201      TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-6452      TCGA-BR-6455      TCGA-BR-6457      TCGA-BR-6458 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6801 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7707      TCGA-BR-7715 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-8059 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-8077      TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8360      TCGA-BR-8361 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED"   "FBXW7 MUTATED" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8484 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588      TCGA-BR-8589 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8676      TCGA-BR-8677 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A4IV 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J4 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4QI 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8528 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8576      TCGA-D7-A4YT 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4Z0      TCGA-EQ-5647 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-FP-7735 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-FP-8209      TCGA-HJ-7597      TCGA-HU-8243      TCGA-HU-8245 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4GD 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ      TCGA-HU-A4GU 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-IP-7968 
"FBXW7 WILD-TYPE" 
[1] "hr=" "1.5"
D14V2, continuous
                 vv
clus              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  FBXW7 MUTATED         0        0        2        2         3         1
  FBXW7 WILD-TYPE       1        7       20       22        18        27
                 vv
clus              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  FBXW7 MUTATED           0          1          1          3        2
  FBXW7 WILD-TYPE         3         33         22         15       22
D14V3, multiclass
                 vv
clus              T1 T2 T3 T4
  FBXW7 MUTATED    0  8  3  6
  FBXW7 WILD-TYPE  7 57 86 43
D14V4, multiclass
    clus
vv   FBXW7 MUTATED FBXW7 WILD-TYPE
  T1             0               7
  T2             8              57
  T3             3              86
  T4             6              43
                 vv
clus              N0 N1 N2 N3
  FBXW7 MUTATED    5  6  3  3
  FBXW7 WILD-TYPE 65 59 32 35
D14V5, multiclass
    clus
vv   FBXW7 MUTATED FBXW7 WILD-TYPE
  N0             5              65
  N1             6              59
  N2             3              32
  N3             3              35
                 vv
clus               M0  M1  MX
  FBXW7 MUTATED    18   1   0
  FBXW7 WILD-TYPE 176  15   9
D14V6, multiclass
    clus
vv   FBXW7 MUTATED FBXW7 WILD-TYPE
  M0            18             176
  M1             1              15
  MX             0               9
D14V7, binary
                 cls
clus                0   1
  FBXW7 MUTATED     8  11
  FBXW7 WILD-TYPE  79 121
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FBXW7 MUTATED      8   11
  FBXW7 WILD-TYPE   79  121
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  FEMALE             8              79
  MALE              11             121
                 vv
clus              STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  FBXW7 MUTATED                                       0
  FBXW7 WILD-TYPE                                    31
                 vv
clus              STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  FBXW7 MUTATED                                                       12
  FBXW7 WILD-TYPE                                                     96
                 vv
clus              STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  FBXW7 MUTATED                                                                   4
  FBXW7 WILD-TYPE                                                                30
                 vv
clus              STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  FBXW7 MUTATED                                                  2
  FBXW7 WILD-TYPE                                               24
                 vv
clus              STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  FBXW7 MUTATED                                                          1
  FBXW7 WILD-TYPE                                                       12
                 vv
clus              STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  FBXW7 MUTATED                                                           0
  FBXW7 WILD-TYPE                                                         5
                 vv
clus              STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  FBXW7 MUTATED                                          0
  FBXW7 WILD-TYPE                                        1
D14V8, multiclass
D14V9, binary
                 cls
clus                0   1
  FBXW7 MUTATED     1  18
  FBXW7 WILD-TYPE   5 195
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FBXW7 MUTATED      1   18
  FBXW7 WILD-TYPE    5  195
     clus
vv    FBXW7 MUTATED FBXW7 WILD-TYPE
  NO              1               5
  YES            18             195
                 vv
clus               R0  R1  R2  RX
  FBXW7 MUTATED    14   0   0   4
  FBXW7 WILD-TYPE 157   6  10  19
D14V10, multiclass
    clus
vv   FBXW7 MUTATED FBXW7 WILD-TYPE
  R0            14             157
  R1             0               6
  R2             0              10
  RX             4              19
D14V11, continuous

Clustering(15) Variable = B2M MUTATION ANALYSIS
D15V1, survival
               sevent
clus2             0   1
  B2M MUTATED     7   1
  B2M WILD-TYPE 152  29
  B2M MUTATED B2M WILD-TYPE 
            8           181 
  B2M MUTATED B2M WILD-TYPE 
            1            29 
$`B2M MUTATED`
TCGA-BR-6566 TCGA-BR-6852 TCGA-BR-7707 TCGA-BR-8591 TCGA-BR-A4QL TCGA-CD-A4MI 
       12.43         0.26         0.13         0.20         2.24         0.10 
TCGA-CG-5721 TCGA-F1-6177 
        5.98         6.54 

$`B2M WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4184 TCGA-BR-4201 TCGA-BR-4267 
        5.62         0.10         6.61         6.94        30.90         6.15 
TCGA-BR-4279 TCGA-BR-4280 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        9.57         6.61         8.45        13.12        11.70         6.97 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
       10.85         9.40         0.62        13.81         2.17        11.61 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 
        1.12         0.76         0.66         1.22         1.48         0.46 
TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 
        1.05         0.82         0.69         0.16         4.54         0.99 
TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-8059 TCGA-BR-8077 TCGA-BR-8080 TCGA-BR-8081 
        0.95         0.69         0.82         0.69         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8360 TCGA-BR-8361 TCGA-BR-8365 
        0.72         1.55         1.48         0.20         0.39         2.96 
TCGA-BR-8366 TCGA-BR-8367 TCGA-BR-8368 TCGA-BR-8370 TCGA-BR-8371 TCGA-BR-8372 
        0.56         1.08         1.38         0.56         0.36         0.59 
TCGA-BR-8373 TCGA-BR-8381 TCGA-BR-8382 TCGA-BR-8384 TCGA-BR-8484 TCGA-BR-8485 
        0.85         0.26         0.43         0.69         0.69         0.30 
TCGA-BR-8486 TCGA-BR-8588 TCGA-BR-8589 TCGA-BR-8590 TCGA-BR-8676 TCGA-BR-8677 
        0.99         0.76         1.91         2.14         0.89         0.49 
TCGA-BR-8678 TCGA-BR-8679 TCGA-BR-8680 TCGA-BR-8682 TCGA-BR-8683 TCGA-BR-8687 
        0.16         0.16         0.79         1.64         0.59         0.62 
TCGA-BR-8690 TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J4 
        0.59         0.92         0.39         0.79         0.72         0.53 
TCGA-BR-A4J6 TCGA-BR-A4J7 TCGA-BR-A4J8 TCGA-BR-A4QI TCGA-CD-5798 TCGA-CD-5799 
        0.13         0.46         0.23         0.49         2.83         3.25 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CD-8524 
       13.15        13.18         0.30         0.07         0.39         0.07 
TCGA-CD-8525 TCGA-CD-8526 TCGA-CD-8528 TCGA-CD-8529 TCGA-CD-8530 TCGA-CD-8531 
        0.07         0.07         0.10         0.13         0.16         0.10 
TCGA-CD-8532 TCGA-CD-8535 TCGA-CD-A4MJ TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 
        0.10         0.13         0.10        20.02         3.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 
       15.95         1.02         7.96         8.05        54.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4465 
       14.01        29.98        47.05        19.07        12.03         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
       18.94         7.07         1.02         6.94         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5727 
        0.99         0.95        70.06        12.03        28.96        31.04 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       65.10         4.01        55.04        21.07         7.99        12.36 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
       12.66        11.93        19.13        20.55        18.84        18.54 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
       18.61        17.85        13.35        17.19        10.26        15.22 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-D7-8570 
       15.98        12.79        10.55        11.31        12.30         7.99 
TCGA-D7-8572 TCGA-D7-8573 TCGA-D7-8574 TCGA-D7-8576 TCGA-D7-A4YT TCGA-D7-A4YU 
        0.85         3.88         4.18         3.19         4.24         6.90 
TCGA-D7-A4YV TCGA-D7-A4Z0 TCGA-EQ-5647 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 
        5.92         4.87         0.62         2.01        72.23         0.39 
TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-HJ-7597 
        0.20         3.02         3.58         1.02        59.05        26.43 
TCGA-HU-8243 TCGA-HU-8245 TCGA-HU-8604 TCGA-HU-8610 TCGA-HU-A4G2 TCGA-HU-A4GD 
        5.92        12.59        12.10         0.76        15.19        14.10 
TCGA-HU-A4GN TCGA-HU-A4GP TCGA-HU-A4GQ TCGA-HU-A4GU TCGA-HU-A4H3 TCGA-HU-A4H4 
       21.04         8.98         0.10         6.25        19.36        17.69 
TCGA-HU-A4H5 TCGA-HU-A4H6 TCGA-IN-7806 TCGA-IN-7808 TCGA-IN-8462 TCGA-IN-8663 
       12.30         9.63         6.87         3.55        10.49         3.39 
TCGA-IP-7968 
        2.53 

  B2M MUTATED B2M WILD-TYPE 
         0.10          0.07 
  B2M MUTATED B2M WILD-TYPE 
        12.43         72.23 
  B2M MUTATED B2M WILD-TYPE 
         1.25          3.02 
[1] "0.1 - 12.4 (1.2)" "0.1 - 72.2 (3.0)"
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-4183    TCGA-BR-4184    TCGA-BR-4201 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-4267    TCGA-BR-4279    TCGA-BR-4280    TCGA-BR-6452    TCGA-BR-6455 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-6457    TCGA-BR-6458    TCGA-BR-6563    TCGA-BR-6564    TCGA-BR-6565 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-6566    TCGA-BR-6705    TCGA-BR-6706    TCGA-BR-6707    TCGA-BR-6801 
  "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-6802    TCGA-BR-6803    TCGA-BR-6852    TCGA-BR-7196    TCGA-BR-7197 
"B2M WILD-TYPE" "B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-7703    TCGA-BR-7707    TCGA-BR-7715    TCGA-BR-7716    TCGA-BR-7717 
"B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-7722    TCGA-BR-7723    TCGA-BR-7851    TCGA-BR-7901    TCGA-BR-7957 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-8059    TCGA-BR-8077    TCGA-BR-8080    TCGA-BR-8081    TCGA-BR-8284 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-8295    TCGA-BR-8296    TCGA-BR-8360    TCGA-BR-8361    TCGA-BR-8365 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-8366    TCGA-BR-8367    TCGA-BR-8368    TCGA-BR-8370    TCGA-BR-8371 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-8372    TCGA-BR-8373    TCGA-BR-8381    TCGA-BR-8382    TCGA-BR-8384 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-8484    TCGA-BR-8485    TCGA-BR-8486    TCGA-BR-8588    TCGA-BR-8589 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-8590    TCGA-BR-8591    TCGA-BR-8676    TCGA-BR-8677    TCGA-BR-8678 
"B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-8679    TCGA-BR-8680    TCGA-BR-8682    TCGA-BR-8683    TCGA-BR-8687 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-8690    TCGA-BR-A4IV    TCGA-BR-A4IY    TCGA-BR-A4IZ    TCGA-BR-A4J1 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-A4J4    TCGA-BR-A4J6    TCGA-BR-A4J7    TCGA-BR-A4J8    TCGA-BR-A4QI 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-A4QL    TCGA-CD-5798    TCGA-CD-5799    TCGA-CD-5800    TCGA-CD-5801 
  "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CD-5802    TCGA-CD-5803    TCGA-CD-5813    TCGA-CD-8524    TCGA-CD-8525 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CD-8526    TCGA-CD-8528    TCGA-CD-8529    TCGA-CD-8530    TCGA-CD-8531 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CD-8532    TCGA-CD-8535    TCGA-CD-A4MI    TCGA-CD-A4MJ    TCGA-CG-4300 
"B2M WILD-TYPE" "B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305    TCGA-CG-4306    TCGA-CG-4436 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4440    TCGA-CG-4441    TCGA-CG-4443 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CG-4444    TCGA-CG-4449    TCGA-CG-4455    TCGA-CG-4465    TCGA-CG-4466 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CG-4469    TCGA-CG-4477    TCGA-CG-5717    TCGA-CG-5718    TCGA-CG-5719 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723    TCGA-CG-5724 
"B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728    TCGA-CG-5730    TCGA-CG-5732 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577    TCGA-D7-5578    TCGA-D7-5579 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520    TCGA-D7-6521    TCGA-D7-6522 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526    TCGA-D7-6527    TCGA-D7-6528 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818    TCGA-D7-6820    TCGA-D7-6822 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-D7-8570    TCGA-D7-8572    TCGA-D7-8573    TCGA-D7-8574    TCGA-D7-8576 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-D7-A4YT    TCGA-D7-A4YU    TCGA-D7-A4YV    TCGA-D7-A4Z0    TCGA-EQ-5647 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-F1-6177    TCGA-F1-6874    TCGA-F1-6875    TCGA-FP-7735    TCGA-FP-7829 
  "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-FP-7916    TCGA-FP-7998    TCGA-FP-8099    TCGA-FP-8209    TCGA-HJ-7597 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-HU-8243    TCGA-HU-8245    TCGA-HU-8604    TCGA-HU-8610    TCGA-HU-A4G2 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-HU-A4GD    TCGA-HU-A4GN    TCGA-HU-A4GP    TCGA-HU-A4GQ    TCGA-HU-A4GU 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-HU-A4H3    TCGA-HU-A4H4    TCGA-HU-A4H5    TCGA-HU-A4H6    TCGA-IN-7806 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-IN-7808    TCGA-IN-8462    TCGA-IN-8663    TCGA-IP-7968 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-4183    TCGA-BR-4184    TCGA-BR-4201 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-4267    TCGA-BR-4279    TCGA-BR-4280    TCGA-BR-6452    TCGA-BR-6455 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-6457    TCGA-BR-6458    TCGA-BR-6563    TCGA-BR-6564    TCGA-BR-6565 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-6566    TCGA-BR-6705    TCGA-BR-6706    TCGA-BR-6707    TCGA-BR-6801 
  "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-6802    TCGA-BR-6803    TCGA-BR-6852    TCGA-BR-7196    TCGA-BR-7197 
"B2M WILD-TYPE" "B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-7703    TCGA-BR-7707    TCGA-BR-7715    TCGA-BR-7716    TCGA-BR-7717 
"B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-7722    TCGA-BR-7723    TCGA-BR-7851    TCGA-BR-7901    TCGA-BR-7957 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-8059    TCGA-BR-8077    TCGA-BR-8080    TCGA-BR-8081    TCGA-BR-8284 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-8295    TCGA-BR-8296    TCGA-BR-8360    TCGA-BR-8361    TCGA-BR-8365 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-8366    TCGA-BR-8367    TCGA-BR-8368    TCGA-BR-8370    TCGA-BR-8371 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-8372    TCGA-BR-8373    TCGA-BR-8381    TCGA-BR-8382    TCGA-BR-8384 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-8484    TCGA-BR-8485    TCGA-BR-8486    TCGA-BR-8588    TCGA-BR-8589 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-8590    TCGA-BR-8591    TCGA-BR-8676    TCGA-BR-8677    TCGA-BR-8678 
"B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-8679    TCGA-BR-8680    TCGA-BR-8682    TCGA-BR-8683    TCGA-BR-8687 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-8690    TCGA-BR-A4IV    TCGA-BR-A4IY    TCGA-BR-A4IZ    TCGA-BR-A4J1 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-A4J4    TCGA-BR-A4J6    TCGA-BR-A4J7    TCGA-BR-A4J8    TCGA-BR-A4QI 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-A4QL    TCGA-CD-5798    TCGA-CD-5799    TCGA-CD-5800    TCGA-CD-5801 
  "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CD-5802    TCGA-CD-5803    TCGA-CD-5813    TCGA-CD-8524    TCGA-CD-8525 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CD-8526    TCGA-CD-8528    TCGA-CD-8529    TCGA-CD-8530    TCGA-CD-8531 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CD-8532    TCGA-CD-8535    TCGA-CD-A4MI    TCGA-CD-A4MJ    TCGA-CG-4300 
"B2M WILD-TYPE" "B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305    TCGA-CG-4306    TCGA-CG-4436 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4440    TCGA-CG-4441    TCGA-CG-4443 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CG-4444    TCGA-CG-4449    TCGA-CG-4455    TCGA-CG-4465    TCGA-CG-4466 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CG-4469    TCGA-CG-4477    TCGA-CG-5717    TCGA-CG-5718    TCGA-CG-5719 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723    TCGA-CG-5724 
"B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728    TCGA-CG-5730    TCGA-CG-5732 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577    TCGA-D7-5578    TCGA-D7-5579 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520    TCGA-D7-6521    TCGA-D7-6522 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526    TCGA-D7-6527    TCGA-D7-6528 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818    TCGA-D7-6820    TCGA-D7-6822 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-D7-8570    TCGA-D7-8572    TCGA-D7-8573    TCGA-D7-8574    TCGA-D7-8576 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-D7-A4YT    TCGA-D7-A4YU    TCGA-D7-A4YV    TCGA-D7-A4Z0    TCGA-EQ-5647 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-F1-6177    TCGA-F1-6874    TCGA-F1-6875    TCGA-FP-7735    TCGA-FP-7829 
  "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-FP-7916    TCGA-FP-7998    TCGA-FP-8099    TCGA-FP-8209    TCGA-HJ-7597 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-HU-8243    TCGA-HU-8245    TCGA-HU-8604    TCGA-HU-8610    TCGA-HU-A4G2 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-HU-A4GD    TCGA-HU-A4GN    TCGA-HU-A4GP    TCGA-HU-A4GQ    TCGA-HU-A4GU 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-HU-A4H3    TCGA-HU-A4H4    TCGA-HU-A4H5    TCGA-HU-A4H6    TCGA-IN-7806 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-IN-7808    TCGA-IN-8462    TCGA-IN-8663    TCGA-IP-7968 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-4183    TCGA-BR-4184    TCGA-BR-4201 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-4267    TCGA-BR-4279    TCGA-BR-4280    TCGA-BR-6452    TCGA-BR-6455 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-6457    TCGA-BR-6458    TCGA-BR-6563    TCGA-BR-6564    TCGA-BR-6565 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-6566    TCGA-BR-6705    TCGA-BR-6706    TCGA-BR-6707    TCGA-BR-6801 
  "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-6802    TCGA-BR-6803    TCGA-BR-6852    TCGA-BR-7196    TCGA-BR-7197 
"B2M WILD-TYPE" "B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-7703    TCGA-BR-7707    TCGA-BR-7715    TCGA-BR-7716    TCGA-BR-7717 
"B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-7722    TCGA-BR-7723    TCGA-BR-7851    TCGA-BR-7901    TCGA-BR-7957 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-8059    TCGA-BR-8077    TCGA-BR-8080    TCGA-BR-8081    TCGA-BR-8284 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-8295    TCGA-BR-8296    TCGA-BR-8360    TCGA-BR-8361    TCGA-BR-8365 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-8366    TCGA-BR-8367    TCGA-BR-8368    TCGA-BR-8370    TCGA-BR-8371 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-8372    TCGA-BR-8373    TCGA-BR-8381    TCGA-BR-8382    TCGA-BR-8384 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-8484    TCGA-BR-8485    TCGA-BR-8486    TCGA-BR-8588    TCGA-BR-8589 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-8590    TCGA-BR-8591    TCGA-BR-8676    TCGA-BR-8677    TCGA-BR-8678 
"B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-8679    TCGA-BR-8680    TCGA-BR-8682    TCGA-BR-8683    TCGA-BR-8687 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-8690    TCGA-BR-A4IV    TCGA-BR-A4IY    TCGA-BR-A4IZ    TCGA-BR-A4J1 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-A4J4    TCGA-BR-A4J6    TCGA-BR-A4J7    TCGA-BR-A4J8    TCGA-BR-A4QI 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BR-A4QL    TCGA-CD-5798    TCGA-CD-5799    TCGA-CD-5800    TCGA-CD-5801 
  "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CD-5802    TCGA-CD-5803    TCGA-CD-5813    TCGA-CD-8524    TCGA-CD-8525 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CD-8526    TCGA-CD-8528    TCGA-CD-8529    TCGA-CD-8530    TCGA-CD-8531 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CD-8532    TCGA-CD-8535    TCGA-CD-A4MI    TCGA-CD-A4MJ    TCGA-CG-4300 
"B2M WILD-TYPE" "B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305    TCGA-CG-4306    TCGA-CG-4436 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4440    TCGA-CG-4441    TCGA-CG-4443 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CG-4444    TCGA-CG-4449    TCGA-CG-4455    TCGA-CG-4465    TCGA-CG-4466 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CG-4469    TCGA-CG-4477    TCGA-CG-5717    TCGA-CG-5718    TCGA-CG-5719 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723    TCGA-CG-5724 
"B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728    TCGA-CG-5730    TCGA-CG-5732 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577    TCGA-D7-5578    TCGA-D7-5579 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520    TCGA-D7-6521    TCGA-D7-6522 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526    TCGA-D7-6527    TCGA-D7-6528 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818    TCGA-D7-6820    TCGA-D7-6822 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-D7-8570    TCGA-D7-8572    TCGA-D7-8573    TCGA-D7-8574    TCGA-D7-8576 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-D7-A4YT    TCGA-D7-A4YU    TCGA-D7-A4YV    TCGA-D7-A4Z0    TCGA-EQ-5647 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-F1-6177    TCGA-F1-6874    TCGA-F1-6875    TCGA-FP-7735    TCGA-FP-7829 
  "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-FP-7916    TCGA-FP-7998    TCGA-FP-8099    TCGA-FP-8209    TCGA-HJ-7597 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-HU-8243    TCGA-HU-8245    TCGA-HU-8604    TCGA-HU-8610    TCGA-HU-A4G2 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-HU-A4GD    TCGA-HU-A4GN    TCGA-HU-A4GP    TCGA-HU-A4GQ    TCGA-HU-A4GU 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-HU-A4H3    TCGA-HU-A4H4    TCGA-HU-A4H5    TCGA-HU-A4H6    TCGA-IN-7806 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-IN-7808    TCGA-IN-8462    TCGA-IN-8663    TCGA-IP-7968 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
[1] "hr=" "2.1"
D15V2, continuous
               vv
clus            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  B2M MUTATED         1        1        0        0         2         0
  B2M WILD-TYPE       0        6       22       24        19        28
               vv
clus            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  B2M MUTATED           0          0          2          1        1
  B2M WILD-TYPE         3         34         21         17       23
D15V3, multiclass
               vv
clus            T1 T2 T3 T4
  B2M MUTATED    1  1  4  2
  B2M WILD-TYPE  6 64 85 47
D15V4, multiclass
    clus
vv   B2M MUTATED B2M WILD-TYPE
  T1           1             6
  T2           1            64
  T3           4            85
  T4           2            47
               vv
clus            N0 N1 N2 N3
  B2M MUTATED    3  3  0  2
  B2M WILD-TYPE 67 62 35 36
D15V5, multiclass
    clus
vv   B2M MUTATED B2M WILD-TYPE
  N0           3            67
  N1           3            62
  N2           0            35
  N3           2            36
               vv
clus             M0  M1  MX
  B2M MUTATED     7   0   1
  B2M WILD-TYPE 187  16   8
D15V6, multiclass
    clus
vv   B2M MUTATED B2M WILD-TYPE
  M0           7           187
  M1           0            16
  MX           1             8
D15V7, binary
               cls
clus              0   1
  B2M MUTATED     4   4
  B2M WILD-TYPE  83 128
[1] "tbl2"
               cls
clus            [,1] [,2]
  B2M MUTATED      4    4
  B2M WILD-TYPE   83  128
        clus
vv       B2M MUTATED B2M WILD-TYPE
  FEMALE           4            83
  MALE             4           128
               vv
clus            STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  B2M MUTATED                                       0
  B2M WILD-TYPE                                    31
               vv
clus            STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  B2M MUTATED                                                        7
  B2M WILD-TYPE                                                    101
               vv
clus            STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  B2M MUTATED                                                                   1
  B2M WILD-TYPE                                                                33
               vv
clus            STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  B2M MUTATED                                                  0
  B2M WILD-TYPE                                               26
               vv
clus            STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  B2M MUTATED                                                          0
  B2M WILD-TYPE                                                       13
               vv
clus            STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  B2M MUTATED                                                           0
  B2M WILD-TYPE                                                         5
               vv
clus            STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  B2M MUTATED                                          0
  B2M WILD-TYPE                                        1
D15V8, multiclass
D15V9, binary
               cls
clus              0   1
  B2M MUTATED     0   8
  B2M WILD-TYPE   6 205
[1] "tbl2"
               cls
clus            [,1] [,2]
  B2M MUTATED      0    8
  B2M WILD-TYPE    6  205
     clus
vv    B2M MUTATED B2M WILD-TYPE
  NO            0             6
  YES           8           205
               vv
clus             R0  R1  R2  RX
  B2M MUTATED     7   0   0   0
  B2M WILD-TYPE 164   6  10  23
D15V10, multiclass
    clus
vv   B2M MUTATED B2M WILD-TYPE
  R0           7           164
  R1           0             6
  R2           0            10
  RX           0            23
D15V11, continuous

Clustering(16) Variable = PTH2 MUTATION ANALYSIS
D16V1, survival
                sevent
clus2              0   1
  PTH2 MUTATED     3   0
  PTH2 WILD-TYPE 156  30
  PTH2 MUTATED PTH2 WILD-TYPE 
             3            186 
  PTH2 MUTATED PTH2 WILD-TYPE 
             0             30 
$`PTH2 MUTATED`
TCGA-BR-6706 TCGA-BR-A4QL TCGA-D7-6519 
        2.17         2.24        20.55 

$`PTH2 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4184 TCGA-BR-4201 TCGA-BR-4267 
        5.62         0.10         6.61         6.94        30.90         6.15 
TCGA-BR-4279 TCGA-BR-4280 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        9.57         6.61         8.45        13.12        11.70         6.97 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6707 
       10.85         9.40         0.62        12.43        13.81        11.61 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        1.12         0.76         0.66         0.26         1.22         1.48 
TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 
        0.46         0.13         1.05         0.82         0.69         0.16 
TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-8059 TCGA-BR-8077 
        4.54         0.99         0.95         0.69         0.82         0.69 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8360 
        0.49         0.46         0.72         1.55         1.48         0.20 
TCGA-BR-8361 TCGA-BR-8365 TCGA-BR-8366 TCGA-BR-8367 TCGA-BR-8368 TCGA-BR-8370 
        0.39         2.96         0.56         1.08         1.38         0.56 
TCGA-BR-8371 TCGA-BR-8372 TCGA-BR-8373 TCGA-BR-8381 TCGA-BR-8382 TCGA-BR-8384 
        0.36         0.59         0.85         0.26         0.43         0.69 
TCGA-BR-8484 TCGA-BR-8485 TCGA-BR-8486 TCGA-BR-8588 TCGA-BR-8589 TCGA-BR-8590 
        0.69         0.30         0.99         0.76         1.91         2.14 
TCGA-BR-8591 TCGA-BR-8676 TCGA-BR-8677 TCGA-BR-8678 TCGA-BR-8679 TCGA-BR-8680 
        0.20         0.89         0.49         0.16         0.16         0.79 
TCGA-BR-8682 TCGA-BR-8683 TCGA-BR-8687 TCGA-BR-8690 TCGA-BR-A4IV TCGA-BR-A4IY 
        1.64         0.59         0.62         0.59         0.92         0.39 
TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-BR-A4J6 TCGA-BR-A4J7 TCGA-BR-A4J8 
        0.79         0.72         0.53         0.13         0.46         0.23 
TCGA-BR-A4QI TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 
        0.49         2.83         3.25        13.15        13.18         0.30 
TCGA-CD-5803 TCGA-CD-5813 TCGA-CD-8524 TCGA-CD-8525 TCGA-CD-8526 TCGA-CD-8528 
        0.07         0.39         0.07         0.07         0.07         0.10 
TCGA-CD-8529 TCGA-CD-8530 TCGA-CD-8531 TCGA-CD-8532 TCGA-CD-8535 TCGA-CD-A4MI 
        0.13         0.16         0.10         0.10         0.13         0.10 
TCGA-CD-A4MJ TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.10        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
        7.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       47.05        19.07        12.03         8.98        18.94         7.07 
TCGA-CG-4477 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         6.94         1.02         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
        0.95        70.06        12.03        28.96        31.04        65.10 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 
        4.01        55.04        21.07         7.99        12.36        12.66 
TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
       11.93        19.13        18.84        18.54        18.61        17.85 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
       13.35        17.19        10.26        15.22        15.98        12.79 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-D7-8570 TCGA-D7-8572 TCGA-D7-8573 
       10.55        11.31        12.30         7.99         0.85         3.88 
TCGA-D7-8574 TCGA-D7-8576 TCGA-D7-A4YT TCGA-D7-A4YU TCGA-D7-A4YV TCGA-D7-A4Z0 
        4.18         3.19         4.24         6.90         5.92         4.87 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 
        0.62         6.54         2.01        72.23         0.39         0.20 
TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-HJ-7597 TCGA-HU-8243 
        3.02         3.58         1.02        59.05        26.43         5.92 
TCGA-HU-8245 TCGA-HU-8604 TCGA-HU-8610 TCGA-HU-A4G2 TCGA-HU-A4GD TCGA-HU-A4GN 
       12.59        12.10         0.76        15.19        14.10        21.04 
TCGA-HU-A4GP TCGA-HU-A4GQ TCGA-HU-A4GU TCGA-HU-A4H3 TCGA-HU-A4H4 TCGA-HU-A4H5 
        8.98         0.10         6.25        19.36        17.69        12.30 
TCGA-HU-A4H6 TCGA-IN-7806 TCGA-IN-7808 TCGA-IN-8462 TCGA-IN-8663 TCGA-IP-7968 
        9.63         6.87         3.55        10.49         3.39         2.53 

  PTH2 MUTATED PTH2 WILD-TYPE 
          2.17           0.07 
  PTH2 MUTATED PTH2 WILD-TYPE 
         20.55          72.23 
  PTH2 MUTATED PTH2 WILD-TYPE 
          2.24           3.02 
[1] "2.2 - 20.6 (2.2)" "0.1 - 72.2 (3.0)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
"PTH2 WILD-TYPE"   "PTH2 MUTATED" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
  "PTH2 MUTATED" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
  "PTH2 MUTATED" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-IP-7968 
"PTH2 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
"PTH2 WILD-TYPE"   "PTH2 MUTATED" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
  "PTH2 MUTATED" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
  "PTH2 MUTATED" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-IP-7968 
"PTH2 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
"PTH2 WILD-TYPE"   "PTH2 MUTATED" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
  "PTH2 MUTATED" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
  "PTH2 MUTATED" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-IP-7968 
"PTH2 WILD-TYPE" 
[1] "hr="     "9200000"
D16V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  PTH2 MUTATED         0        0        0        0         0         1
  PTH2 WILD-TYPE       1        7       22       24        21        27
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  PTH2 MUTATED           0          1          2          0        0
  PTH2 WILD-TYPE         3         33         21         18       24
D16V3, multiclass
                vv
clus             T1 T2 T3 T4
  PTH2 MUTATED    0  1  3  0
  PTH2 WILD-TYPE  7 64 86 49
D16V4, multiclass
    clus
vv   PTH2 MUTATED PTH2 WILD-TYPE
  T1            0              7
  T2            1             64
  T3            3             86
  T4            0             49
                vv
clus             N0 N1 N2 N3
  PTH2 MUTATED    0  3  0  1
  PTH2 WILD-TYPE 70 62 35 37
D16V5, multiclass
    clus
vv   PTH2 MUTATED PTH2 WILD-TYPE
  N0            0             70
  N1            3             62
  N2            0             35
  N3            1             37
                vv
clus              M0  M1  MX
  PTH2 MUTATED     4   0   0
  PTH2 WILD-TYPE 190  16   9
D16V6, multiclass
    clus
vv   PTH2 MUTATED PTH2 WILD-TYPE
  M0            4            190
  M1            0             16
  MX            0              9
D16V7, binary
                cls
clus               0   1
  PTH2 MUTATED     3   1
  PTH2 WILD-TYPE  84 131
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTH2 MUTATED      3    1
  PTH2 WILD-TYPE   84  131
        clus
vv       PTH2 MUTATED PTH2 WILD-TYPE
  FEMALE            3             84
  MALE              1            131
                vv
clus             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  PTH2 MUTATED                                       1
  PTH2 WILD-TYPE                                    30
                vv
clus             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  PTH2 MUTATED                                                        3
  PTH2 WILD-TYPE                                                    105
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  PTH2 MUTATED                                                                   0
  PTH2 WILD-TYPE                                                                34
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  PTH2 MUTATED                                                  0
  PTH2 WILD-TYPE                                               26
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  PTH2 MUTATED                                                          0
  PTH2 WILD-TYPE                                                       13
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  PTH2 MUTATED                                                           0
  PTH2 WILD-TYPE                                                         5
                vv
clus             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  PTH2 MUTATED                                          0
  PTH2 WILD-TYPE                                        1
D16V8, multiclass
D16V9, binary
                cls
clus               0   1
  PTH2 MUTATED     0   4
  PTH2 WILD-TYPE   6 209
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTH2 MUTATED      0    4
  PTH2 WILD-TYPE    6  209
     clus
vv    PTH2 MUTATED PTH2 WILD-TYPE
  NO             0              6
  YES            4            209
                vv
clus              R0  R1  R2  RX
  PTH2 MUTATED     4   0   0   0
  PTH2 WILD-TYPE 167   6  10  23
D16V10, multiclass
    clus
vv   PTH2 MUTATED PTH2 WILD-TYPE
  R0            4            167
  R1            0              6
  R2            0             10
  RX            0             23
D16V11, continuous

Clustering(17) Variable = FAM46D MUTATION ANALYSIS
D17V1, survival
                  sevent
clus2                0   1
  FAM46D MUTATED     5   0
  FAM46D WILD-TYPE 154  30
  FAM46D MUTATED FAM46D WILD-TYPE 
               5              184 
  FAM46D MUTATED FAM46D WILD-TYPE 
               0               30 
$`FAM46D MUTATED`
TCGA-BR-6563 TCGA-BR-8485 TCGA-CG-4444 TCGA-D7-6822 TCGA-F1-6874 
       10.85         0.30        47.05        12.30         2.01 

$`FAM46D WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4184 TCGA-BR-4201 TCGA-BR-4267 
        5.62         0.10         6.61         6.94        30.90         6.15 
TCGA-BR-4279 TCGA-BR-4280 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        9.57         6.61         8.45        13.12        11.70         6.97 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        9.40         0.62        12.43        13.81         2.17        11.61 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        1.12         0.76         0.66         0.26         1.22         1.48 
TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 
        0.46         0.13         1.05         0.82         0.69         0.16 
TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-8059 TCGA-BR-8077 
        4.54         0.99         0.95         0.69         0.82         0.69 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8360 
        0.49         0.46         0.72         1.55         1.48         0.20 
TCGA-BR-8361 TCGA-BR-8365 TCGA-BR-8366 TCGA-BR-8367 TCGA-BR-8368 TCGA-BR-8370 
        0.39         2.96         0.56         1.08         1.38         0.56 
TCGA-BR-8371 TCGA-BR-8372 TCGA-BR-8373 TCGA-BR-8381 TCGA-BR-8382 TCGA-BR-8384 
        0.36         0.59         0.85         0.26         0.43         0.69 
TCGA-BR-8484 TCGA-BR-8486 TCGA-BR-8588 TCGA-BR-8589 TCGA-BR-8590 TCGA-BR-8591 
        0.69         0.99         0.76         1.91         2.14         0.20 
TCGA-BR-8676 TCGA-BR-8677 TCGA-BR-8678 TCGA-BR-8679 TCGA-BR-8680 TCGA-BR-8682 
        0.89         0.49         0.16         0.16         0.79         1.64 
TCGA-BR-8683 TCGA-BR-8687 TCGA-BR-8690 TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ 
        0.59         0.62         0.59         0.92         0.39         0.79 
TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-BR-A4J6 TCGA-BR-A4J7 TCGA-BR-A4J8 TCGA-BR-A4QI 
        0.72         0.53         0.13         0.46         0.23         0.49 
TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 
        2.24         2.83         3.25        13.15        13.18         0.30 
TCGA-CD-5803 TCGA-CD-5813 TCGA-CD-8524 TCGA-CD-8525 TCGA-CD-8526 TCGA-CD-8528 
        0.07         0.39         0.07         0.07         0.07         0.10 
TCGA-CD-8529 TCGA-CD-8530 TCGA-CD-8531 TCGA-CD-8532 TCGA-CD-8535 TCGA-CD-A4MI 
        0.13         0.16         0.10         0.10         0.13         0.10 
TCGA-CD-A4MJ TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.10        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
        7.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4477 
       19.07        12.03         8.98        18.94         7.07         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        6.94         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       70.06        12.03        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99        12.36        12.66        11.93 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
       19.13        20.55        18.84        18.54        18.61        17.85 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
       13.35        17.19        10.26        15.22        15.98        12.79 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-8570 TCGA-D7-8572 TCGA-D7-8573 TCGA-D7-8574 
       10.55        11.31         7.99         0.85         3.88         4.18 
TCGA-D7-8576 TCGA-D7-A4YT TCGA-D7-A4YU TCGA-D7-A4YV TCGA-D7-A4Z0 TCGA-EQ-5647 
        3.19         4.24         6.90         5.92         4.87         0.62 
TCGA-F1-6177 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 
        6.54        72.23         0.39         0.20         3.02         3.58 
TCGA-FP-8099 TCGA-FP-8209 TCGA-HJ-7597 TCGA-HU-8243 TCGA-HU-8245 TCGA-HU-8604 
        1.02        59.05        26.43         5.92        12.59        12.10 
TCGA-HU-8610 TCGA-HU-A4G2 TCGA-HU-A4GD TCGA-HU-A4GN TCGA-HU-A4GP TCGA-HU-A4GQ 
        0.76        15.19        14.10        21.04         8.98         0.10 
TCGA-HU-A4GU TCGA-HU-A4H3 TCGA-HU-A4H4 TCGA-HU-A4H5 TCGA-HU-A4H6 TCGA-IN-7806 
        6.25        19.36        17.69        12.30         9.63         6.87 
TCGA-IN-7808 TCGA-IN-8462 TCGA-IN-8663 TCGA-IP-7968 
        3.55        10.49         3.39         2.53 

  FAM46D MUTATED FAM46D WILD-TYPE 
            0.30             0.07 
  FAM46D MUTATED FAM46D WILD-TYPE 
           47.05            72.23 
  FAM46D MUTATED FAM46D WILD-TYPE 
           10.85             2.99 
[1] "0.3 - 47.0 (10.8)" "0.1 - 72.2 (3.0)" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4183       TCGA-BR-4184 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-4201       TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-6452       TCGA-BR-6455       TCGA-BR-6457       TCGA-BR-6458 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
  "FAM46D MUTATED" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6801 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7707       TCGA-BR-7715 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-7716       TCGA-BR-7717       TCGA-BR-7722       TCGA-BR-7723 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-8059 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-8077       TCGA-BR-8080       TCGA-BR-8081       TCGA-BR-8284 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8360       TCGA-BR-8361 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8484 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8588       TCGA-BR-8589 
  "FAM46D MUTATED" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8676       TCGA-BR-8677 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A4IV 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J4 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4QI 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5813 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526       TCGA-CD-8528 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CD-8535       TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4300 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4440 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CG-4441       TCGA-CG-4443       TCGA-CG-4444       TCGA-CG-4449 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE"   "FAM46D MUTATED" "FAM46D WILD-TYPE" 
      TCGA-CG-4455       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CG-4477       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CG-5724       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572 
"FAM46D WILD-TYPE"   "FAM46D MUTATED" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-D7-8573       TCGA-D7-8574       TCGA-D7-8576       TCGA-D7-A4YT 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4Z0       TCGA-EQ-5647 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875       TCGA-FP-7735 
"FAM46D WILD-TYPE"   "FAM46D MUTATED" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-FP-7829       TCGA-FP-7916       TCGA-FP-7998       TCGA-FP-8099 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-FP-8209       TCGA-HJ-7597       TCGA-HU-8243       TCGA-HU-8245 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-HU-8604       TCGA-HU-8610       TCGA-HU-A4G2       TCGA-HU-A4GD 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-HU-A4GN       TCGA-HU-A4GP       TCGA-HU-A4GQ       TCGA-HU-A4GU 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-HU-A4H3       TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-IP-7968 
"FAM46D WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4183       TCGA-BR-4184 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-4201       TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-6452       TCGA-BR-6455       TCGA-BR-6457       TCGA-BR-6458 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
  "FAM46D MUTATED" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6801 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7707       TCGA-BR-7715 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-7716       TCGA-BR-7717       TCGA-BR-7722       TCGA-BR-7723 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-8059 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-8077       TCGA-BR-8080       TCGA-BR-8081       TCGA-BR-8284 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8360       TCGA-BR-8361 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8484 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8588       TCGA-BR-8589 
  "FAM46D MUTATED" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8676       TCGA-BR-8677 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A4IV 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J4 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4QI 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5813 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526       TCGA-CD-8528 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CD-8535       TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4300 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4440 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CG-4441       TCGA-CG-4443       TCGA-CG-4444       TCGA-CG-4449 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE"   "FAM46D MUTATED" "FAM46D WILD-TYPE" 
      TCGA-CG-4455       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CG-4477       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CG-5724       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572 
"FAM46D WILD-TYPE"   "FAM46D MUTATED" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-D7-8573       TCGA-D7-8574       TCGA-D7-8576       TCGA-D7-A4YT 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4Z0       TCGA-EQ-5647 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875       TCGA-FP-7735 
"FAM46D WILD-TYPE"   "FAM46D MUTATED" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-FP-7829       TCGA-FP-7916       TCGA-FP-7998       TCGA-FP-8099 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-FP-8209       TCGA-HJ-7597       TCGA-HU-8243       TCGA-HU-8245 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-HU-8604       TCGA-HU-8610       TCGA-HU-A4G2       TCGA-HU-A4GD 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-HU-A4GN       TCGA-HU-A4GP       TCGA-HU-A4GQ       TCGA-HU-A4GU 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-HU-A4H3       TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-IP-7968 
"FAM46D WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4183       TCGA-BR-4184 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-4201       TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-6452       TCGA-BR-6455       TCGA-BR-6457       TCGA-BR-6458 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
  "FAM46D MUTATED" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6801 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7707       TCGA-BR-7715 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-7716       TCGA-BR-7717       TCGA-BR-7722       TCGA-BR-7723 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-8059 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-8077       TCGA-BR-8080       TCGA-BR-8081       TCGA-BR-8284 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8360       TCGA-BR-8361 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8484 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8588       TCGA-BR-8589 
  "FAM46D MUTATED" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8676       TCGA-BR-8677 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A4IV 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J4 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4QI 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5813 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526       TCGA-CD-8528 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CD-8535       TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4300 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4440 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CG-4441       TCGA-CG-4443       TCGA-CG-4444       TCGA-CG-4449 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE"   "FAM46D MUTATED" "FAM46D WILD-TYPE" 
      TCGA-CG-4455       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CG-4477       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CG-5724       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572 
"FAM46D WILD-TYPE"   "FAM46D MUTATED" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-D7-8573       TCGA-D7-8574       TCGA-D7-8576       TCGA-D7-A4YT 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4Z0       TCGA-EQ-5647 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875       TCGA-FP-7735 
"FAM46D WILD-TYPE"   "FAM46D MUTATED" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-FP-7829       TCGA-FP-7916       TCGA-FP-7998       TCGA-FP-8099 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-FP-8209       TCGA-HJ-7597       TCGA-HU-8243       TCGA-HU-8245 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-HU-8604       TCGA-HU-8610       TCGA-HU-A4G2       TCGA-HU-A4GD 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-HU-A4GN       TCGA-HU-A4GP       TCGA-HU-A4GQ       TCGA-HU-A4GU 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-HU-A4H3       TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" "FAM46D WILD-TYPE" 
      TCGA-IP-7968 
"FAM46D WILD-TYPE" 
[1] "hr="     "2.6e+07"
D17V2, continuous
                  vv
clus               STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  FAM46D MUTATED         0        0        2        0         1         1
  FAM46D WILD-TYPE       1        7       20       24        20        27
                  vv
clus               STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  FAM46D MUTATED           0          1          0          1        0
  FAM46D WILD-TYPE         3         33         23         17       24
D17V3, multiclass
                  vv
clus               T1 T2 T3 T4
  FAM46D MUTATED    0  4  1  1
  FAM46D WILD-TYPE  7 61 88 48
D17V4, multiclass
    clus
vv   FAM46D MUTATED FAM46D WILD-TYPE
  T1              0                7
  T2              4               61
  T3              1               88
  T4              1               48
                  vv
clus               N0 N1 N2 N3
  FAM46D MUTATED    2  2  1  1
  FAM46D WILD-TYPE 68 63 34 37
D17V5, multiclass
    clus
vv   FAM46D MUTATED FAM46D WILD-TYPE
  N0              2               68
  N1              2               63
  N2              1               34
  N3              1               37
                  vv
clus                M0  M1  MX
  FAM46D MUTATED     6   0   0
  FAM46D WILD-TYPE 188  16   9
D17V6, multiclass
    clus
vv   FAM46D MUTATED FAM46D WILD-TYPE
  M0              6              188
  M1              0               16
  MX              0                9
D17V7, binary
                  cls
clus                 0   1
  FAM46D MUTATED     2   4
  FAM46D WILD-TYPE  85 128
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM46D MUTATED      2    4
  FAM46D WILD-TYPE   85  128
        clus
vv       FAM46D MUTATED FAM46D WILD-TYPE
  FEMALE              2               85
  MALE                4              128
                  vv
clus               STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  FAM46D MUTATED                                       1
  FAM46D WILD-TYPE                                    30
                  vv
clus               STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  FAM46D MUTATED                                                        3
  FAM46D WILD-TYPE                                                    105
                  vv
clus               STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  FAM46D MUTATED                                                                   1
  FAM46D WILD-TYPE                                                                33
                  vv
clus               STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  FAM46D MUTATED                                                  1
  FAM46D WILD-TYPE                                               25
                  vv
clus               STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  FAM46D MUTATED                                                          0
  FAM46D WILD-TYPE                                                       13
                  vv
clus               STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  FAM46D MUTATED                                                           0
  FAM46D WILD-TYPE                                                         5
                  vv
clus               STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  FAM46D MUTATED                                          0
  FAM46D WILD-TYPE                                        1
D17V8, multiclass
D17V9, binary
                  cls
clus                 0   1
  FAM46D MUTATED     0   6
  FAM46D WILD-TYPE   6 207
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM46D MUTATED      0    6
  FAM46D WILD-TYPE    6  207
     clus
vv    FAM46D MUTATED FAM46D WILD-TYPE
  NO               0                6
  YES              6              207
                  vv
clus                R0  R1  R2  RX
  FAM46D MUTATED     6   0   0   0
  FAM46D WILD-TYPE 165   6  10  23
D17V10, multiclass
    clus
vv   FAM46D MUTATED FAM46D WILD-TYPE
  R0              6              165
  R1              0                6
  R2              0               10
  RX              0               23
D17V11, continuous

Clustering(18) Variable = APC MUTATION ANALYSIS
D18V1, survival
               sevent
clus2             0   1
  APC MUTATED    18   9
  APC WILD-TYPE 141  21
  APC MUTATED APC WILD-TYPE 
           27           162 
  APC MUTATED APC WILD-TYPE 
            9            21 
$`APC MUTATED`
TCGA-BR-4184 TCGA-BR-4267 TCGA-BR-6452 TCGA-BR-6563 TCGA-BR-6565 TCGA-BR-6566 
        6.94         6.15         8.45        10.85         0.62        12.43 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-8081 TCGA-BR-8680 TCGA-CD-8535 TCGA-CD-A4MJ 
        1.48         0.46         0.46         0.79         0.13         0.10 
TCGA-CG-4306 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-5718 TCGA-CG-5721 TCGA-CG-5726 
        1.02         8.98         7.07         1.02         5.98        28.96 
TCGA-CG-5733 TCGA-D7-6528 TCGA-D7-A4YV TCGA-F1-6875 TCGA-FP-7735 TCGA-HU-8243 
       21.07        15.22         5.92        72.23         0.39         5.92 
TCGA-HU-8245 TCGA-HU-A4GU TCGA-HU-A4H3 
       12.59         6.25        19.36 

$`APC WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4201 TCGA-BR-4279 TCGA-BR-4280 
        5.62         0.10         6.61        30.90         9.57         6.61 
TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6705 TCGA-BR-6706 
       13.12        11.70         6.97         9.40        13.81         2.17 
TCGA-BR-6707 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
       11.61         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 
        0.13         1.05         0.82         0.69         0.16         4.54 
TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-8059 TCGA-BR-8077 TCGA-BR-8080 
        0.99         0.95         0.69         0.82         0.69         0.49 
TCGA-BR-8284 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8360 TCGA-BR-8361 TCGA-BR-8365 
        0.72         1.55         1.48         0.20         0.39         2.96 
TCGA-BR-8366 TCGA-BR-8367 TCGA-BR-8368 TCGA-BR-8370 TCGA-BR-8371 TCGA-BR-8372 
        0.56         1.08         1.38         0.56         0.36         0.59 
TCGA-BR-8373 TCGA-BR-8381 TCGA-BR-8382 TCGA-BR-8384 TCGA-BR-8484 TCGA-BR-8485 
        0.85         0.26         0.43         0.69         0.69         0.30 
TCGA-BR-8486 TCGA-BR-8588 TCGA-BR-8589 TCGA-BR-8590 TCGA-BR-8591 TCGA-BR-8676 
        0.99         0.76         1.91         2.14         0.20         0.89 
TCGA-BR-8677 TCGA-BR-8678 TCGA-BR-8679 TCGA-BR-8682 TCGA-BR-8683 TCGA-BR-8687 
        0.49         0.16         0.16         1.64         0.59         0.62 
TCGA-BR-8690 TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J4 
        0.59         0.92         0.39         0.79         0.72         0.53 
TCGA-BR-A4J6 TCGA-BR-A4J7 TCGA-BR-A4J8 TCGA-BR-A4QI TCGA-BR-A4QL TCGA-CD-5798 
        0.13         0.46         0.23         0.49         2.24         2.83 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        3.25        13.15        13.18         0.30         0.07         0.39 
TCGA-CD-8524 TCGA-CD-8525 TCGA-CD-8526 TCGA-CD-8528 TCGA-CD-8529 TCGA-CD-8530 
        0.07         0.07         0.07         0.10         0.13         0.16 
TCGA-CD-8531 TCGA-CD-8532 TCGA-CD-A4MI TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 
        0.10         0.10         0.10        20.02         3.02        27.02 
TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 
       15.95         7.96         8.05        54.05         4.01        14.01 
TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4466 TCGA-CG-4477 
       29.98        47.05        19.07        12.03        18.94         1.02 
TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        6.94         1.02         0.99         0.95        70.06        12.03 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 
       31.04        65.10         4.01        55.04         7.99        12.36 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
       12.66        11.93        19.13        20.55        18.84        18.54 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 
       18.61        17.85        13.35        17.19        10.26        15.98 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-D7-8570 TCGA-D7-8572 
       12.79        10.55        11.31        12.30         7.99         0.85 
TCGA-D7-8573 TCGA-D7-8574 TCGA-D7-8576 TCGA-D7-A4YT TCGA-D7-A4YU TCGA-D7-A4Z0 
        3.88         4.18         3.19         4.24         6.90         4.87 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 
        0.62         6.54         2.01         0.20         3.02         3.58 
TCGA-FP-8099 TCGA-FP-8209 TCGA-HJ-7597 TCGA-HU-8604 TCGA-HU-8610 TCGA-HU-A4G2 
        1.02        59.05        26.43        12.10         0.76        15.19 
TCGA-HU-A4GD TCGA-HU-A4GN TCGA-HU-A4GP TCGA-HU-A4GQ TCGA-HU-A4H4 TCGA-HU-A4H5 
       14.10        21.04         8.98         0.10        17.69        12.30 
TCGA-HU-A4H6 TCGA-IN-7806 TCGA-IN-7808 TCGA-IN-8462 TCGA-IN-8663 TCGA-IP-7968 
        9.63         6.87         3.55        10.49         3.39         2.53 

  APC MUTATED APC WILD-TYPE 
         0.10          0.07 
  APC MUTATED APC WILD-TYPE 
        72.23         70.06 
  APC MUTATED APC WILD-TYPE 
        6.150         2.385 
[1] "0.1 - 72.2 (6.2)" "0.1 - 70.1 (2.4)"
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-4183    TCGA-BR-4184    TCGA-BR-4201 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-BR-4267    TCGA-BR-4279    TCGA-BR-4280    TCGA-BR-6452    TCGA-BR-6455 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-BR-6457    TCGA-BR-6458    TCGA-BR-6563    TCGA-BR-6564    TCGA-BR-6565 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-BR-6566    TCGA-BR-6705    TCGA-BR-6706    TCGA-BR-6707    TCGA-BR-6801 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-6802    TCGA-BR-6803    TCGA-BR-6852    TCGA-BR-7196    TCGA-BR-7197 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-BR-7703    TCGA-BR-7707    TCGA-BR-7715    TCGA-BR-7716    TCGA-BR-7717 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-7722    TCGA-BR-7723    TCGA-BR-7851    TCGA-BR-7901    TCGA-BR-7957 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-8059    TCGA-BR-8077    TCGA-BR-8080    TCGA-BR-8081    TCGA-BR-8284 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-BR-8295    TCGA-BR-8296    TCGA-BR-8360    TCGA-BR-8361    TCGA-BR-8365 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-8366    TCGA-BR-8367    TCGA-BR-8368    TCGA-BR-8370    TCGA-BR-8371 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-8372    TCGA-BR-8373    TCGA-BR-8381    TCGA-BR-8382    TCGA-BR-8384 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-8484    TCGA-BR-8485    TCGA-BR-8486    TCGA-BR-8588    TCGA-BR-8589 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-8590    TCGA-BR-8591    TCGA-BR-8676    TCGA-BR-8677    TCGA-BR-8678 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-8679    TCGA-BR-8680    TCGA-BR-8682    TCGA-BR-8683    TCGA-BR-8687 
"APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-8690    TCGA-BR-A4IV    TCGA-BR-A4IY    TCGA-BR-A4IZ    TCGA-BR-A4J1 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-A4J4    TCGA-BR-A4J6    TCGA-BR-A4J7    TCGA-BR-A4J8    TCGA-BR-A4QI 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-A4QL    TCGA-CD-5798    TCGA-CD-5799    TCGA-CD-5800    TCGA-CD-5801 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-CD-5802    TCGA-CD-5803    TCGA-CD-5813    TCGA-CD-8524    TCGA-CD-8525 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-CD-8526    TCGA-CD-8528    TCGA-CD-8529    TCGA-CD-8530    TCGA-CD-8531 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-CD-8532    TCGA-CD-8535    TCGA-CD-A4MI    TCGA-CD-A4MJ    TCGA-CG-4300 
"APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305    TCGA-CG-4306    TCGA-CG-4436 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4440    TCGA-CG-4441    TCGA-CG-4443 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-CG-4444    TCGA-CG-4449    TCGA-CG-4455    TCGA-CG-4465    TCGA-CG-4466 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-CG-4469    TCGA-CG-4477    TCGA-CG-5717    TCGA-CG-5718    TCGA-CG-5719 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723    TCGA-CG-5724 
"APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728    TCGA-CG-5730    TCGA-CG-5732 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577    TCGA-D7-5578    TCGA-D7-5579 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520    TCGA-D7-6521    TCGA-D7-6522 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526    TCGA-D7-6527    TCGA-D7-6528 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818    TCGA-D7-6820    TCGA-D7-6822 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-D7-8570    TCGA-D7-8572    TCGA-D7-8573    TCGA-D7-8574    TCGA-D7-8576 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-D7-A4YT    TCGA-D7-A4YU    TCGA-D7-A4YV    TCGA-D7-A4Z0    TCGA-EQ-5647 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-F1-6177    TCGA-F1-6874    TCGA-F1-6875    TCGA-FP-7735    TCGA-FP-7829 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-FP-7916    TCGA-FP-7998    TCGA-FP-8099    TCGA-FP-8209    TCGA-HJ-7597 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-HU-8243    TCGA-HU-8245    TCGA-HU-8604    TCGA-HU-8610    TCGA-HU-A4G2 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-HU-A4GD    TCGA-HU-A4GN    TCGA-HU-A4GP    TCGA-HU-A4GQ    TCGA-HU-A4GU 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-HU-A4H3    TCGA-HU-A4H4    TCGA-HU-A4H5    TCGA-HU-A4H6    TCGA-IN-7806 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-IN-7808    TCGA-IN-8462    TCGA-IN-8663    TCGA-IP-7968 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-4183    TCGA-BR-4184    TCGA-BR-4201 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-BR-4267    TCGA-BR-4279    TCGA-BR-4280    TCGA-BR-6452    TCGA-BR-6455 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-BR-6457    TCGA-BR-6458    TCGA-BR-6563    TCGA-BR-6564    TCGA-BR-6565 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-BR-6566    TCGA-BR-6705    TCGA-BR-6706    TCGA-BR-6707    TCGA-BR-6801 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-6802    TCGA-BR-6803    TCGA-BR-6852    TCGA-BR-7196    TCGA-BR-7197 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-BR-7703    TCGA-BR-7707    TCGA-BR-7715    TCGA-BR-7716    TCGA-BR-7717 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-7722    TCGA-BR-7723    TCGA-BR-7851    TCGA-BR-7901    TCGA-BR-7957 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-8059    TCGA-BR-8077    TCGA-BR-8080    TCGA-BR-8081    TCGA-BR-8284 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-BR-8295    TCGA-BR-8296    TCGA-BR-8360    TCGA-BR-8361    TCGA-BR-8365 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-8366    TCGA-BR-8367    TCGA-BR-8368    TCGA-BR-8370    TCGA-BR-8371 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-8372    TCGA-BR-8373    TCGA-BR-8381    TCGA-BR-8382    TCGA-BR-8384 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-8484    TCGA-BR-8485    TCGA-BR-8486    TCGA-BR-8588    TCGA-BR-8589 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-8590    TCGA-BR-8591    TCGA-BR-8676    TCGA-BR-8677    TCGA-BR-8678 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-8679    TCGA-BR-8680    TCGA-BR-8682    TCGA-BR-8683    TCGA-BR-8687 
"APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-8690    TCGA-BR-A4IV    TCGA-BR-A4IY    TCGA-BR-A4IZ    TCGA-BR-A4J1 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-A4J4    TCGA-BR-A4J6    TCGA-BR-A4J7    TCGA-BR-A4J8    TCGA-BR-A4QI 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-A4QL    TCGA-CD-5798    TCGA-CD-5799    TCGA-CD-5800    TCGA-CD-5801 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-CD-5802    TCGA-CD-5803    TCGA-CD-5813    TCGA-CD-8524    TCGA-CD-8525 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-CD-8526    TCGA-CD-8528    TCGA-CD-8529    TCGA-CD-8530    TCGA-CD-8531 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-CD-8532    TCGA-CD-8535    TCGA-CD-A4MI    TCGA-CD-A4MJ    TCGA-CG-4300 
"APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305    TCGA-CG-4306    TCGA-CG-4436 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4440    TCGA-CG-4441    TCGA-CG-4443 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-CG-4444    TCGA-CG-4449    TCGA-CG-4455    TCGA-CG-4465    TCGA-CG-4466 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-CG-4469    TCGA-CG-4477    TCGA-CG-5717    TCGA-CG-5718    TCGA-CG-5719 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723    TCGA-CG-5724 
"APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728    TCGA-CG-5730    TCGA-CG-5732 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577    TCGA-D7-5578    TCGA-D7-5579 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520    TCGA-D7-6521    TCGA-D7-6522 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526    TCGA-D7-6527    TCGA-D7-6528 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818    TCGA-D7-6820    TCGA-D7-6822 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-D7-8570    TCGA-D7-8572    TCGA-D7-8573    TCGA-D7-8574    TCGA-D7-8576 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-D7-A4YT    TCGA-D7-A4YU    TCGA-D7-A4YV    TCGA-D7-A4Z0    TCGA-EQ-5647 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-F1-6177    TCGA-F1-6874    TCGA-F1-6875    TCGA-FP-7735    TCGA-FP-7829 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-FP-7916    TCGA-FP-7998    TCGA-FP-8099    TCGA-FP-8209    TCGA-HJ-7597 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-HU-8243    TCGA-HU-8245    TCGA-HU-8604    TCGA-HU-8610    TCGA-HU-A4G2 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-HU-A4GD    TCGA-HU-A4GN    TCGA-HU-A4GP    TCGA-HU-A4GQ    TCGA-HU-A4GU 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-HU-A4H3    TCGA-HU-A4H4    TCGA-HU-A4H5    TCGA-HU-A4H6    TCGA-IN-7806 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-IN-7808    TCGA-IN-8462    TCGA-IN-8663    TCGA-IP-7968 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-4183    TCGA-BR-4184    TCGA-BR-4201 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-BR-4267    TCGA-BR-4279    TCGA-BR-4280    TCGA-BR-6452    TCGA-BR-6455 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-BR-6457    TCGA-BR-6458    TCGA-BR-6563    TCGA-BR-6564    TCGA-BR-6565 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-BR-6566    TCGA-BR-6705    TCGA-BR-6706    TCGA-BR-6707    TCGA-BR-6801 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-6802    TCGA-BR-6803    TCGA-BR-6852    TCGA-BR-7196    TCGA-BR-7197 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-BR-7703    TCGA-BR-7707    TCGA-BR-7715    TCGA-BR-7716    TCGA-BR-7717 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-7722    TCGA-BR-7723    TCGA-BR-7851    TCGA-BR-7901    TCGA-BR-7957 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-8059    TCGA-BR-8077    TCGA-BR-8080    TCGA-BR-8081    TCGA-BR-8284 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-BR-8295    TCGA-BR-8296    TCGA-BR-8360    TCGA-BR-8361    TCGA-BR-8365 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-8366    TCGA-BR-8367    TCGA-BR-8368    TCGA-BR-8370    TCGA-BR-8371 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-8372    TCGA-BR-8373    TCGA-BR-8381    TCGA-BR-8382    TCGA-BR-8384 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-8484    TCGA-BR-8485    TCGA-BR-8486    TCGA-BR-8588    TCGA-BR-8589 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-8590    TCGA-BR-8591    TCGA-BR-8676    TCGA-BR-8677    TCGA-BR-8678 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-8679    TCGA-BR-8680    TCGA-BR-8682    TCGA-BR-8683    TCGA-BR-8687 
"APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-8690    TCGA-BR-A4IV    TCGA-BR-A4IY    TCGA-BR-A4IZ    TCGA-BR-A4J1 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-A4J4    TCGA-BR-A4J6    TCGA-BR-A4J7    TCGA-BR-A4J8    TCGA-BR-A4QI 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-BR-A4QL    TCGA-CD-5798    TCGA-CD-5799    TCGA-CD-5800    TCGA-CD-5801 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-CD-5802    TCGA-CD-5803    TCGA-CD-5813    TCGA-CD-8524    TCGA-CD-8525 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-CD-8526    TCGA-CD-8528    TCGA-CD-8529    TCGA-CD-8530    TCGA-CD-8531 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-CD-8532    TCGA-CD-8535    TCGA-CD-A4MI    TCGA-CD-A4MJ    TCGA-CG-4300 
"APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305    TCGA-CG-4306    TCGA-CG-4436 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4440    TCGA-CG-4441    TCGA-CG-4443 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-CG-4444    TCGA-CG-4449    TCGA-CG-4455    TCGA-CG-4465    TCGA-CG-4466 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-CG-4469    TCGA-CG-4477    TCGA-CG-5717    TCGA-CG-5718    TCGA-CG-5719 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723    TCGA-CG-5724 
"APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728    TCGA-CG-5730    TCGA-CG-5732 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577    TCGA-D7-5578    TCGA-D7-5579 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520    TCGA-D7-6521    TCGA-D7-6522 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526    TCGA-D7-6527    TCGA-D7-6528 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818    TCGA-D7-6820    TCGA-D7-6822 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-D7-8570    TCGA-D7-8572    TCGA-D7-8573    TCGA-D7-8574    TCGA-D7-8576 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-D7-A4YT    TCGA-D7-A4YU    TCGA-D7-A4YV    TCGA-D7-A4Z0    TCGA-EQ-5647 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-F1-6177    TCGA-F1-6874    TCGA-F1-6875    TCGA-FP-7735    TCGA-FP-7829 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-FP-7916    TCGA-FP-7998    TCGA-FP-8099    TCGA-FP-8209    TCGA-HJ-7597 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-HU-8243    TCGA-HU-8245    TCGA-HU-8604    TCGA-HU-8610    TCGA-HU-A4G2 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-HU-A4GD    TCGA-HU-A4GN    TCGA-HU-A4GP    TCGA-HU-A4GQ    TCGA-HU-A4GU 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-HU-A4H3    TCGA-HU-A4H4    TCGA-HU-A4H5    TCGA-HU-A4H6    TCGA-IN-7806 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-IN-7808    TCGA-IN-8462    TCGA-IN-8663    TCGA-IP-7968 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
[1] "hr=" "1.9"
D18V2, continuous
               vv
clus            STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  APC MUTATED         0        3        5        2         3         5
  APC WILD-TYPE       1        4       17       22        18        23
               vv
clus            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  APC MUTATED           0          4          0          3        5
  APC WILD-TYPE         3         30         23         15       19
D18V3, multiclass
               vv
clus            T1 T2 T3 T4
  APC MUTATED    2  8 11  9
  APC WILD-TYPE  5 57 78 40
D18V4, multiclass
    clus
vv   APC MUTATED APC WILD-TYPE
  T1           2             5
  T2           8            57
  T3          11            78
  T4           9            40
               vv
clus            N0 N1 N2 N3
  APC MUTATED   15  9  3  5
  APC WILD-TYPE 55 56 32 33
D18V5, multiclass
    clus
vv   APC MUTATED APC WILD-TYPE
  N0          15            55
  N1           9            56
  N2           3            32
  N3           5            33
               vv
clus             M0  M1  MX
  APC MUTATED    28   3   2
  APC WILD-TYPE 166  13   7
D18V6, multiclass
    clus
vv   APC MUTATED APC WILD-TYPE
  M0          28           166
  M1           3            13
  MX           2             7
D18V7, binary
               cls
clus              0   1
  APC MUTATED    12  21
  APC WILD-TYPE  75 111
[1] "tbl2"
               cls
clus            [,1] [,2]
  APC MUTATED     12   21
  APC WILD-TYPE   75  111
        clus
vv       APC MUTATED APC WILD-TYPE
  FEMALE          12            75
  MALE            21           111
               vv
clus            STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  APC MUTATED                                       4
  APC WILD-TYPE                                    27
               vv
clus            STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  APC MUTATED                                                       17
  APC WILD-TYPE                                                     91
               vv
clus            STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  APC MUTATED                                                                   6
  APC WILD-TYPE                                                                28
               vv
clus            STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  APC MUTATED                                                  4
  APC WILD-TYPE                                               22
               vv
clus            STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  APC MUTATED                                                          0
  APC WILD-TYPE                                                       13
               vv
clus            STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  APC MUTATED                                                           2
  APC WILD-TYPE                                                         3
               vv
clus            STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  APC MUTATED                                          0
  APC WILD-TYPE                                        1
D18V8, multiclass
D18V9, binary
               cls
clus              0   1
  APC MUTATED     0  33
  APC WILD-TYPE   6 180
[1] "tbl2"
               cls
clus            [,1] [,2]
  APC MUTATED      0   33
  APC WILD-TYPE    6  180
     clus
vv    APC MUTATED APC WILD-TYPE
  NO            0             6
  YES          33           180
               vv
clus             R0  R1  R2  RX
  APC MUTATED    23   1   2   6
  APC WILD-TYPE 148   5   8  17
D18V10, multiclass
    clus
vv   APC MUTATED APC WILD-TYPE
  R0          23           148
  R1           1             5
  R2           2             8
  RX           6            17
D18V11, continuous

Clustering(19) Variable = RNF43 MUTATION ANALYSIS
D19V1, survival
                 sevent
clus2               0   1
  RNF43 MUTATED     3   5
  RNF43 WILD-TYPE 156  25
  RNF43 MUTATED RNF43 WILD-TYPE 
              8             181 
  RNF43 MUTATED RNF43 WILD-TYPE 
              5              25 
$`RNF43 MUTATED`
TCGA-BR-4201 TCGA-BR-8368 TCGA-BR-8588 TCGA-CG-4469 TCGA-CG-5720 TCGA-CG-5733 
       30.90         1.38         0.76         7.07         0.99        21.07 
TCGA-D7-A4YT TCGA-HJ-7597 
        4.24        26.43 

$`RNF43 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4184 TCGA-BR-4267 TCGA-BR-4279 
        5.62         0.10         6.61         6.94         6.15         9.57 
TCGA-BR-4280 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 
        6.61         8.45        13.12        11.70         6.97        10.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        9.40         0.62        12.43        13.81         2.17        11.61 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        1.12         0.76         0.66         0.26         1.22         1.48 
TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 
        0.46         0.13         1.05         0.82         0.69         0.16 
TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-8059 TCGA-BR-8077 
        4.54         0.99         0.95         0.69         0.82         0.69 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8360 
        0.49         0.46         0.72         1.55         1.48         0.20 
TCGA-BR-8361 TCGA-BR-8365 TCGA-BR-8366 TCGA-BR-8367 TCGA-BR-8370 TCGA-BR-8371 
        0.39         2.96         0.56         1.08         0.56         0.36 
TCGA-BR-8372 TCGA-BR-8373 TCGA-BR-8381 TCGA-BR-8382 TCGA-BR-8384 TCGA-BR-8484 
        0.59         0.85         0.26         0.43         0.69         0.69 
TCGA-BR-8485 TCGA-BR-8486 TCGA-BR-8589 TCGA-BR-8590 TCGA-BR-8591 TCGA-BR-8676 
        0.30         0.99         1.91         2.14         0.20         0.89 
TCGA-BR-8677 TCGA-BR-8678 TCGA-BR-8679 TCGA-BR-8680 TCGA-BR-8682 TCGA-BR-8683 
        0.49         0.16         0.16         0.79         1.64         0.59 
TCGA-BR-8687 TCGA-BR-8690 TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 
        0.62         0.59         0.92         0.39         0.79         0.72 
TCGA-BR-A4J4 TCGA-BR-A4J6 TCGA-BR-A4J7 TCGA-BR-A4J8 TCGA-BR-A4QI TCGA-BR-A4QL 
        0.53         0.13         0.46         0.23         0.49         2.24 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        2.83         3.25        13.15        13.18         0.30         0.07 
TCGA-CD-5813 TCGA-CD-8524 TCGA-CD-8525 TCGA-CD-8526 TCGA-CD-8528 TCGA-CD-8529 
        0.39         0.07         0.07         0.07         0.10         0.13 
TCGA-CD-8530 TCGA-CD-8531 TCGA-CD-8532 TCGA-CD-8535 TCGA-CD-A4MI TCGA-CD-A4MJ 
        0.16         0.10         0.10         0.13         0.10         0.10 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02         7.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4477 TCGA-CG-5717 
       19.07        12.03         8.98        18.94         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         1.02         5.98         0.95        70.06        12.03 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 
       28.96        31.04        65.10         4.01        55.04         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
       12.36        12.66        11.93        19.13        20.55        18.84 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
       18.54        18.61        17.85        13.35        17.19        10.26 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
       15.22        15.98        12.79        10.55        11.31        12.30 
TCGA-D7-8570 TCGA-D7-8572 TCGA-D7-8573 TCGA-D7-8574 TCGA-D7-8576 TCGA-D7-A4YU 
        7.99         0.85         3.88         4.18         3.19         6.90 
TCGA-D7-A4YV TCGA-D7-A4Z0 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 
        5.92         4.87         0.62         6.54         2.01        72.23 
TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 
        0.39         0.20         3.02         3.58         1.02        59.05 
TCGA-HU-8243 TCGA-HU-8245 TCGA-HU-8604 TCGA-HU-8610 TCGA-HU-A4G2 TCGA-HU-A4GD 
        5.92        12.59        12.10         0.76        15.19        14.10 
TCGA-HU-A4GN TCGA-HU-A4GP TCGA-HU-A4GQ TCGA-HU-A4GU TCGA-HU-A4H3 TCGA-HU-A4H4 
       21.04         8.98         0.10         6.25        19.36        17.69 
TCGA-HU-A4H5 TCGA-HU-A4H6 TCGA-IN-7806 TCGA-IN-7808 TCGA-IN-8462 TCGA-IN-8663 
       12.30         9.63         6.87         3.55        10.49         3.39 
TCGA-IP-7968 
        2.53 

  RNF43 MUTATED RNF43 WILD-TYPE 
           0.76            0.07 
  RNF43 MUTATED RNF43 WILD-TYPE 
          30.90           72.23 
  RNF43 MUTATED RNF43 WILD-TYPE 
          5.655           2.960 
[1] "0.8 - 30.9 (5.7)" "0.1 - 72.2 (3.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-4201      TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280 
  "RNF43 MUTATED" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6452      TCGA-BR-6455      TCGA-BR-6457      TCGA-BR-6458 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6801 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7707      TCGA-BR-7715 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-8059 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-8077      TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8360      TCGA-BR-8361 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8484 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588      TCGA-BR-8589 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8676      TCGA-BR-8677 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A4IV 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J4 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4QI 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8528 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
  "RNF43 MUTATED" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8576      TCGA-D7-A4YT 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4Z0      TCGA-EQ-5647 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-FP-7735 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-FP-8209      TCGA-HJ-7597      TCGA-HU-8243      TCGA-HU-8245 
"RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4GD 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ      TCGA-HU-A4GU 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-IP-7968 
"RNF43 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-4201      TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280 
  "RNF43 MUTATED" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6452      TCGA-BR-6455      TCGA-BR-6457      TCGA-BR-6458 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6801 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7707      TCGA-BR-7715 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-8059 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-8077      TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8360      TCGA-BR-8361 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8484 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588      TCGA-BR-8589 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8676      TCGA-BR-8677 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A4IV 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J4 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4QI 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8528 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
  "RNF43 MUTATED" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8576      TCGA-D7-A4YT 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4Z0      TCGA-EQ-5647 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-FP-7735 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-FP-8209      TCGA-HJ-7597      TCGA-HU-8243      TCGA-HU-8245 
"RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4GD 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ      TCGA-HU-A4GU 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-IP-7968 
"RNF43 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-4201      TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280 
  "RNF43 MUTATED" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6452      TCGA-BR-6455      TCGA-BR-6457      TCGA-BR-6458 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6801 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7707      TCGA-BR-7715 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-8059 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-8077      TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8360      TCGA-BR-8361 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8484 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588      TCGA-BR-8589 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8676      TCGA-BR-8677 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A4IV 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J4 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4QI 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8528 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
  "RNF43 MUTATED" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8576      TCGA-D7-A4YT 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4Z0      TCGA-EQ-5647 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-FP-7735 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-FP-8209      TCGA-HJ-7597      TCGA-HU-8243      TCGA-HU-8245 
"RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4GD 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ      TCGA-HU-A4GU 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-IP-7968 
"RNF43 WILD-TYPE" 
[1] "hr=" "2.8"
D19V2, continuous
                 vv
clus              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  RNF43 MUTATED         0        0        4        0         0         1
  RNF43 WILD-TYPE       1        7       18       24        21        27
                 vv
clus              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  RNF43 MUTATED           0          1          0          0        2
  RNF43 WILD-TYPE         3         33         23         18       22
D19V3, multiclass
                 vv
clus              T1 T2 T3 T4
  RNF43 MUTATED    0  6  1  2
  RNF43 WILD-TYPE  7 59 88 47
D19V4, multiclass
    clus
vv   RNF43 MUTATED RNF43 WILD-TYPE
  T1             0               7
  T2             6              59
  T3             1              88
  T4             2              47
                 vv
clus              N0 N1 N2 N3
  RNF43 MUTATED    5  0  2  1
  RNF43 WILD-TYPE 65 65 33 37
D19V5, multiclass
    clus
vv   RNF43 MUTATED RNF43 WILD-TYPE
  N0             5              65
  N1             0              65
  N2             2              33
  N3             1              37
                 vv
clus               M0  M1  MX
  RNF43 MUTATED     8   0   1
  RNF43 WILD-TYPE 186  16   8
D19V6, multiclass
    clus
vv   RNF43 MUTATED RNF43 WILD-TYPE
  M0             8             186
  M1             0              16
  MX             1               8
D19V7, binary
                 cls
clus                0   1
  RNF43 MUTATED     6   3
  RNF43 WILD-TYPE  81 129
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RNF43 MUTATED      6    3
  RNF43 WILD-TYPE   81  129
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  FEMALE             6              81
  MALE               3             129
                 vv
clus              STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  RNF43 MUTATED                                       0
  RNF43 WILD-TYPE                                    31
                 vv
clus              STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  RNF43 MUTATED                                                        5
  RNF43 WILD-TYPE                                                    103
                 vv
clus              STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  RNF43 MUTATED                                                                   2
  RNF43 WILD-TYPE                                                                32
                 vv
clus              STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  RNF43 MUTATED                                                  1
  RNF43 WILD-TYPE                                               25
                 vv
clus              STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  RNF43 MUTATED                                                          0
  RNF43 WILD-TYPE                                                       13
                 vv
clus              STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  RNF43 MUTATED                                                           0
  RNF43 WILD-TYPE                                                         5
                 vv
clus              STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  RNF43 MUTATED                                          1
  RNF43 WILD-TYPE                                        0
D19V8, multiclass
D19V9, binary
                 cls
clus                0   1
  RNF43 MUTATED     0   9
  RNF43 WILD-TYPE   6 204
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RNF43 MUTATED      0    9
  RNF43 WILD-TYPE    6  204
     clus
vv    RNF43 MUTATED RNF43 WILD-TYPE
  NO              0               6
  YES             9             204
                 vv
clus               R0  R1  R2  RX
  RNF43 MUTATED     6   1   0   2
  RNF43 WILD-TYPE 165   5  10  21
D19V10, multiclass
    clus
vv   RNF43 MUTATED RNF43 WILD-TYPE
  R0             6             165
  R1             1               5
  R2             0              10
  RX             2              21
D19V11, continuous

Clustering(20) Variable = MAP2K7 MUTATION ANALYSIS
D20V1, survival
                  sevent
clus2                0   1
  MAP2K7 MUTATED     9   2
  MAP2K7 WILD-TYPE 150  28
  MAP2K7 MUTATED MAP2K7 WILD-TYPE 
              11              178 
  MAP2K7 MUTATED MAP2K7 WILD-TYPE 
               2               28 
$`MAP2K7 MUTATED`
TCGA-BR-6452 TCGA-BR-7707 TCGA-BR-8360 TCGA-BR-8368 TCGA-BR-A4IY TCGA-BR-A4J7 
        8.45         0.13         0.20         1.38         0.39         0.46 
TCGA-CD-A4MI TCGA-CG-5718 TCGA-CG-5724 TCGA-CG-5733 TCGA-HU-8610 
        0.10         1.02        12.03        21.07         0.76 

$`MAP2K7 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4184 TCGA-BR-4201 TCGA-BR-4267 
        5.62         0.10         6.61         6.94        30.90         6.15 
TCGA-BR-4279 TCGA-BR-4280 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 
        9.57         6.61        13.12        11.70         6.97        10.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        9.40         0.62        12.43        13.81         2.17        11.61 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        1.12         0.76         0.66         0.26         1.22         1.48 
TCGA-BR-7703 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 
        0.46         1.05         0.82         0.69         0.16         4.54 
TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-8059 TCGA-BR-8077 TCGA-BR-8080 
        0.99         0.95         0.69         0.82         0.69         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8361 TCGA-BR-8365 
        0.46         0.72         1.55         1.48         0.39         2.96 
TCGA-BR-8366 TCGA-BR-8367 TCGA-BR-8370 TCGA-BR-8371 TCGA-BR-8372 TCGA-BR-8373 
        0.56         1.08         0.56         0.36         0.59         0.85 
TCGA-BR-8381 TCGA-BR-8382 TCGA-BR-8384 TCGA-BR-8484 TCGA-BR-8485 TCGA-BR-8486 
        0.26         0.43         0.69         0.69         0.30         0.99 
TCGA-BR-8588 TCGA-BR-8589 TCGA-BR-8590 TCGA-BR-8591 TCGA-BR-8676 TCGA-BR-8677 
        0.76         1.91         2.14         0.20         0.89         0.49 
TCGA-BR-8678 TCGA-BR-8679 TCGA-BR-8680 TCGA-BR-8682 TCGA-BR-8683 TCGA-BR-8687 
        0.16         0.16         0.79         1.64         0.59         0.62 
TCGA-BR-8690 TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-BR-A4J6 
        0.59         0.92         0.79         0.72         0.53         0.13 
TCGA-BR-A4J8 TCGA-BR-A4QI TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 
        0.23         0.49         2.24         2.83         3.25        13.15 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CD-8524 TCGA-CD-8525 
       13.18         0.30         0.07         0.39         0.07         0.07 
TCGA-CD-8526 TCGA-CD-8528 TCGA-CD-8529 TCGA-CD-8530 TCGA-CD-8531 TCGA-CD-8532 
        0.07         0.10         0.13         0.16         0.10         0.10 
TCGA-CD-8535 TCGA-CD-A4MJ TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 
        0.13         0.10        20.02         3.02        27.02        15.95 
TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 
        1.02         7.96         8.05        54.05         4.01        14.01 
TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4465 TCGA-CG-4466 
       29.98        47.05        19.07        12.03         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        7.07         1.02         6.94         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
        0.95        70.06        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       55.04         7.99        12.36        12.66        11.93        19.13 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       20.55        18.84        18.54        18.61        17.85        13.35 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
       17.19        10.26        15.22        15.98        12.79        10.55 
TCGA-D7-6820 TCGA-D7-6822 TCGA-D7-8570 TCGA-D7-8572 TCGA-D7-8573 TCGA-D7-8574 
       11.31        12.30         7.99         0.85         3.88         4.18 
TCGA-D7-8576 TCGA-D7-A4YT TCGA-D7-A4YU TCGA-D7-A4YV TCGA-D7-A4Z0 TCGA-EQ-5647 
        3.19         4.24         6.90         5.92         4.87         0.62 
TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 
        6.54         2.01        72.23         0.39         0.20         3.02 
TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-HJ-7597 TCGA-HU-8243 TCGA-HU-8245 
        3.58         1.02        59.05        26.43         5.92        12.59 
TCGA-HU-8604 TCGA-HU-A4G2 TCGA-HU-A4GD TCGA-HU-A4GN TCGA-HU-A4GP TCGA-HU-A4GQ 
       12.10        15.19        14.10        21.04         8.98         0.10 
TCGA-HU-A4GU TCGA-HU-A4H3 TCGA-HU-A4H4 TCGA-HU-A4H5 TCGA-HU-A4H6 TCGA-IN-7806 
        6.25        19.36        17.69        12.30         9.63         6.87 
TCGA-IN-7808 TCGA-IN-8462 TCGA-IN-8663 TCGA-IP-7968 
        3.55        10.49         3.39         2.53 

  MAP2K7 MUTATED MAP2K7 WILD-TYPE 
            0.10             0.07 
  MAP2K7 MUTATED MAP2K7 WILD-TYPE 
           21.07            72.23 
  MAP2K7 MUTATED MAP2K7 WILD-TYPE 
            0.76             3.22 
[1] "0.1 - 21.1 (0.8)" "0.1 - 72.2 (3.2)"
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4183       TCGA-BR-4184 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-4201       TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-6452       TCGA-BR-6455       TCGA-BR-6457       TCGA-BR-6458 
  "MAP2K7 MUTATED" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6801 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7707       TCGA-BR-7715 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE"   "MAP2K7 MUTATED" "MAP2K7 WILD-TYPE" 
      TCGA-BR-7716       TCGA-BR-7717       TCGA-BR-7722       TCGA-BR-7723 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-8059 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-8077       TCGA-BR-8080       TCGA-BR-8081       TCGA-BR-8284 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8360       TCGA-BR-8361 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE"   "MAP2K7 MUTATED" "MAP2K7 WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE"   "MAP2K7 MUTATED" 
      TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8484 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8588       TCGA-BR-8589 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8676       TCGA-BR-8677 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A4IV 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J4 
  "MAP2K7 MUTATED" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4QI 
"MAP2K7 WILD-TYPE"   "MAP2K7 MUTATED" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5813 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526       TCGA-CD-8528 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CD-8535       TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4300 
"MAP2K7 WILD-TYPE"   "MAP2K7 MUTATED" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4440 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CG-4441       TCGA-CG-4443       TCGA-CG-4444       TCGA-CG-4449 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CG-4455       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CG-4477       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE"   "MAP2K7 MUTATED" "MAP2K7 WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CG-5724       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
  "MAP2K7 MUTATED" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE"   "MAP2K7 MUTATED" "MAP2K7 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-D7-8573       TCGA-D7-8574       TCGA-D7-8576       TCGA-D7-A4YT 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4Z0       TCGA-EQ-5647 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875       TCGA-FP-7735 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-FP-7829       TCGA-FP-7916       TCGA-FP-7998       TCGA-FP-8099 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-FP-8209       TCGA-HJ-7597       TCGA-HU-8243       TCGA-HU-8245 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-HU-8604       TCGA-HU-8610       TCGA-HU-A4G2       TCGA-HU-A4GD 
"MAP2K7 WILD-TYPE"   "MAP2K7 MUTATED" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-HU-A4GN       TCGA-HU-A4GP       TCGA-HU-A4GQ       TCGA-HU-A4GU 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-HU-A4H3       TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-IP-7968 
"MAP2K7 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4183       TCGA-BR-4184 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-4201       TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-6452       TCGA-BR-6455       TCGA-BR-6457       TCGA-BR-6458 
  "MAP2K7 MUTATED" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6801 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7707       TCGA-BR-7715 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE"   "MAP2K7 MUTATED" "MAP2K7 WILD-TYPE" 
      TCGA-BR-7716       TCGA-BR-7717       TCGA-BR-7722       TCGA-BR-7723 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-8059 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-8077       TCGA-BR-8080       TCGA-BR-8081       TCGA-BR-8284 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8360       TCGA-BR-8361 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE"   "MAP2K7 MUTATED" "MAP2K7 WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE"   "MAP2K7 MUTATED" 
      TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8484 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8588       TCGA-BR-8589 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8676       TCGA-BR-8677 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A4IV 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J4 
  "MAP2K7 MUTATED" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4QI 
"MAP2K7 WILD-TYPE"   "MAP2K7 MUTATED" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5813 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526       TCGA-CD-8528 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CD-8535       TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4300 
"MAP2K7 WILD-TYPE"   "MAP2K7 MUTATED" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4440 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CG-4441       TCGA-CG-4443       TCGA-CG-4444       TCGA-CG-4449 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CG-4455       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CG-4477       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE"   "MAP2K7 MUTATED" "MAP2K7 WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CG-5724       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
  "MAP2K7 MUTATED" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE"   "MAP2K7 MUTATED" "MAP2K7 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-D7-8573       TCGA-D7-8574       TCGA-D7-8576       TCGA-D7-A4YT 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4Z0       TCGA-EQ-5647 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875       TCGA-FP-7735 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-FP-7829       TCGA-FP-7916       TCGA-FP-7998       TCGA-FP-8099 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-FP-8209       TCGA-HJ-7597       TCGA-HU-8243       TCGA-HU-8245 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-HU-8604       TCGA-HU-8610       TCGA-HU-A4G2       TCGA-HU-A4GD 
"MAP2K7 WILD-TYPE"   "MAP2K7 MUTATED" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-HU-A4GN       TCGA-HU-A4GP       TCGA-HU-A4GQ       TCGA-HU-A4GU 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-HU-A4H3       TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-IP-7968 
"MAP2K7 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4183       TCGA-BR-4184 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-4201       TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-6452       TCGA-BR-6455       TCGA-BR-6457       TCGA-BR-6458 
  "MAP2K7 MUTATED" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6801 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7707       TCGA-BR-7715 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE"   "MAP2K7 MUTATED" "MAP2K7 WILD-TYPE" 
      TCGA-BR-7716       TCGA-BR-7717       TCGA-BR-7722       TCGA-BR-7723 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-8059 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-8077       TCGA-BR-8080       TCGA-BR-8081       TCGA-BR-8284 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8360       TCGA-BR-8361 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE"   "MAP2K7 MUTATED" "MAP2K7 WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE"   "MAP2K7 MUTATED" 
      TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8484 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8588       TCGA-BR-8589 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8676       TCGA-BR-8677 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A4IV 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J4 
  "MAP2K7 MUTATED" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4QI 
"MAP2K7 WILD-TYPE"   "MAP2K7 MUTATED" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5813 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526       TCGA-CD-8528 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CD-8535       TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4300 
"MAP2K7 WILD-TYPE"   "MAP2K7 MUTATED" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4440 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CG-4441       TCGA-CG-4443       TCGA-CG-4444       TCGA-CG-4449 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CG-4455       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CG-4477       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE"   "MAP2K7 MUTATED" "MAP2K7 WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CG-5724       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
  "MAP2K7 MUTATED" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE"   "MAP2K7 MUTATED" "MAP2K7 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-D7-8573       TCGA-D7-8574       TCGA-D7-8576       TCGA-D7-A4YT 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4Z0       TCGA-EQ-5647 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875       TCGA-FP-7735 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-FP-7829       TCGA-FP-7916       TCGA-FP-7998       TCGA-FP-8099 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-FP-8209       TCGA-HJ-7597       TCGA-HU-8243       TCGA-HU-8245 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-HU-8604       TCGA-HU-8610       TCGA-HU-A4G2       TCGA-HU-A4GD 
"MAP2K7 WILD-TYPE"   "MAP2K7 MUTATED" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-HU-A4GN       TCGA-HU-A4GP       TCGA-HU-A4GQ       TCGA-HU-A4GU 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-HU-A4H3       TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" "MAP2K7 WILD-TYPE" 
      TCGA-IP-7968 
"MAP2K7 WILD-TYPE" 
[1] "hr=" "2"  
D20V2, continuous
                  vv
clus               STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  MAP2K7 MUTATED         0        2        2        1         2         2
  MAP2K7 WILD-TYPE       1        5       20       23        19        26
                  vv
clus               STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  MAP2K7 MUTATED           0          1          1          0        2
  MAP2K7 WILD-TYPE         3         33         22         18       22
D20V3, multiclass
                  vv
clus               T1 T2 T3 T4
  MAP2K7 MUTATED    2  5  4  3
  MAP2K7 WILD-TYPE  5 60 85 46
D20V4, multiclass
    clus
vv   MAP2K7 MUTATED MAP2K7 WILD-TYPE
  T1              2                5
  T2              5               60
  T3              4               85
  T4              3               46
                  vv
clus               N0 N1 N2 N3
  MAP2K7 MUTATED    7  2  2  1
  MAP2K7 WILD-TYPE 63 63 33 37
D20V5, multiclass
    clus
vv   MAP2K7 MUTATED MAP2K7 WILD-TYPE
  N0              7               63
  N1              2               63
  N2              2               33
  N3              1               37
                  vv
clus                M0  M1  MX
  MAP2K7 MUTATED    13   1   0
  MAP2K7 WILD-TYPE 181  15   9
D20V6, multiclass
    clus
vv   MAP2K7 MUTATED MAP2K7 WILD-TYPE
  M0             13              181
  M1              1               15
  MX              0                9
D20V7, binary
                  cls
clus                 0   1
  MAP2K7 MUTATED     7   7
  MAP2K7 WILD-TYPE  80 125
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP2K7 MUTATED      7    7
  MAP2K7 WILD-TYPE   80  125
        clus
vv       MAP2K7 MUTATED MAP2K7 WILD-TYPE
  FEMALE              7               80
  MALE                7              125
                  vv
clus               STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  MAP2K7 MUTATED                                       1
  MAP2K7 WILD-TYPE                                    30
                  vv
clus               STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  MAP2K7 MUTATED                                                        7
  MAP2K7 WILD-TYPE                                                    101
                  vv
clus               STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  MAP2K7 MUTATED                                                                   4
  MAP2K7 WILD-TYPE                                                                30
                  vv
clus               STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  MAP2K7 MUTATED                                                  1
  MAP2K7 WILD-TYPE                                               25
                  vv
clus               STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  MAP2K7 MUTATED                                                          1
  MAP2K7 WILD-TYPE                                                       12
                  vv
clus               STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  MAP2K7 MUTATED                                                           0
  MAP2K7 WILD-TYPE                                                         5
                  vv
clus               STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  MAP2K7 MUTATED                                          0
  MAP2K7 WILD-TYPE                                        1
D20V8, multiclass
D20V9, binary
                  cls
clus                 0   1
  MAP2K7 MUTATED     0  14
  MAP2K7 WILD-TYPE   6 199
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP2K7 MUTATED      0   14
  MAP2K7 WILD-TYPE    6  199
     clus
vv    MAP2K7 MUTATED MAP2K7 WILD-TYPE
  NO               0                6
  YES             14              199
                  vv
clus                R0  R1  R2  RX
  MAP2K7 MUTATED    10   0   1   2
  MAP2K7 WILD-TYPE 161   6   9  21
D20V10, multiclass
    clus
vv   MAP2K7 MUTATED MAP2K7 WILD-TYPE
  R0             10              161
  R1              0                6
  R2              1                9
  RX              2               21
D20V11, continuous

Clustering(21) Variable = WSB2 MUTATION ANALYSIS
D21V1, survival
                sevent
clus2              0   1
  WSB2 MUTATED     5   1
  WSB2 WILD-TYPE 154  29
  WSB2 MUTATED WSB2 WILD-TYPE 
             6            183 
  WSB2 MUTATED WSB2 WILD-TYPE 
             1             29 
$`WSB2 MUTATED`
TCGA-BR-6452 TCGA-BR-7703 TCGA-BR-8589 TCGA-CG-4437 TCGA-CG-5723 TCGA-F1-6177 
        8.45         0.46         1.91         8.05        70.06         6.54 

$`WSB2 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4184 TCGA-BR-4201 TCGA-BR-4267 
        5.62         0.10         6.61         6.94        30.90         6.15 
TCGA-BR-4279 TCGA-BR-4280 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 
        9.57         6.61        13.12        11.70         6.97        10.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        9.40         0.62        12.43        13.81         2.17        11.61 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        1.12         0.76         0.66         0.26         1.22         1.48 
TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 
        0.13         1.05         0.82         0.69         0.16         4.54 
TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-8059 TCGA-BR-8077 TCGA-BR-8080 
        0.99         0.95         0.69         0.82         0.69         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8360 TCGA-BR-8361 
        0.46         0.72         1.55         1.48         0.20         0.39 
TCGA-BR-8365 TCGA-BR-8366 TCGA-BR-8367 TCGA-BR-8368 TCGA-BR-8370 TCGA-BR-8371 
        2.96         0.56         1.08         1.38         0.56         0.36 
TCGA-BR-8372 TCGA-BR-8373 TCGA-BR-8381 TCGA-BR-8382 TCGA-BR-8384 TCGA-BR-8484 
        0.59         0.85         0.26         0.43         0.69         0.69 
TCGA-BR-8485 TCGA-BR-8486 TCGA-BR-8588 TCGA-BR-8590 TCGA-BR-8591 TCGA-BR-8676 
        0.30         0.99         0.76         2.14         0.20         0.89 
TCGA-BR-8677 TCGA-BR-8678 TCGA-BR-8679 TCGA-BR-8680 TCGA-BR-8682 TCGA-BR-8683 
        0.49         0.16         0.16         0.79         1.64         0.59 
TCGA-BR-8687 TCGA-BR-8690 TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 
        0.62         0.59         0.92         0.39         0.79         0.72 
TCGA-BR-A4J4 TCGA-BR-A4J6 TCGA-BR-A4J7 TCGA-BR-A4J8 TCGA-BR-A4QI TCGA-BR-A4QL 
        0.53         0.13         0.46         0.23         0.49         2.24 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        2.83         3.25        13.15        13.18         0.30         0.07 
TCGA-CD-5813 TCGA-CD-8524 TCGA-CD-8525 TCGA-CD-8526 TCGA-CD-8528 TCGA-CD-8529 
        0.39         0.07         0.07         0.07         0.10         0.13 
TCGA-CD-8530 TCGA-CD-8531 TCGA-CD-8532 TCGA-CD-8535 TCGA-CD-A4MI TCGA-CD-A4MJ 
        0.16         0.10         0.10         0.13         0.10         0.10 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02         7.96 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5717 
       12.03         8.98        18.94         7.07         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5724 
        1.02         1.02         0.99         5.98         0.95        12.03 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99        12.36        12.66        11.93        19.13        20.55 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
       18.84        18.54        18.61        17.85        13.35        17.19 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
       10.26        15.22        15.98        12.79        10.55        11.31 
TCGA-D7-6822 TCGA-D7-8570 TCGA-D7-8572 TCGA-D7-8573 TCGA-D7-8574 TCGA-D7-8576 
       12.30         7.99         0.85         3.88         4.18         3.19 
TCGA-D7-A4YT TCGA-D7-A4YU TCGA-D7-A4YV TCGA-D7-A4Z0 TCGA-EQ-5647 TCGA-F1-6874 
        4.24         6.90         5.92         4.87         0.62         2.01 
TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 
       72.23         0.39         0.20         3.02         3.58         1.02 
TCGA-FP-8209 TCGA-HJ-7597 TCGA-HU-8243 TCGA-HU-8245 TCGA-HU-8604 TCGA-HU-8610 
       59.05        26.43         5.92        12.59        12.10         0.76 
TCGA-HU-A4G2 TCGA-HU-A4GD TCGA-HU-A4GN TCGA-HU-A4GP TCGA-HU-A4GQ TCGA-HU-A4GU 
       15.19        14.10        21.04         8.98         0.10         6.25 
TCGA-HU-A4H3 TCGA-HU-A4H4 TCGA-HU-A4H5 TCGA-HU-A4H6 TCGA-IN-7806 TCGA-IN-7808 
       19.36        17.69        12.30         9.63         6.87         3.55 
TCGA-IN-8462 TCGA-IN-8663 TCGA-IP-7968 
       10.49         3.39         2.53 

  WSB2 MUTATED WSB2 WILD-TYPE 
          0.46           0.07 
  WSB2 MUTATED WSB2 WILD-TYPE 
         70.06          72.23 
  WSB2 MUTATED WSB2 WILD-TYPE 
         7.295          2.960 
[1] "0.5 - 70.1 (7.3)" "0.1 - 72.2 (3.0)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
  "WSB2 MUTATED" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"WSB2 WILD-TYPE"   "WSB2 MUTATED" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE"   "WSB2 MUTATED" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"WSB2 WILD-TYPE"   "WSB2 MUTATED" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE"   "WSB2 MUTATED" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
  "WSB2 MUTATED" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-IP-7968 
"WSB2 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
  "WSB2 MUTATED" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"WSB2 WILD-TYPE"   "WSB2 MUTATED" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE"   "WSB2 MUTATED" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"WSB2 WILD-TYPE"   "WSB2 MUTATED" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE"   "WSB2 MUTATED" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
  "WSB2 MUTATED" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-IP-7968 
"WSB2 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
  "WSB2 MUTATED" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"WSB2 WILD-TYPE"   "WSB2 MUTATED" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE"   "WSB2 MUTATED" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"WSB2 WILD-TYPE"   "WSB2 MUTATED" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE"   "WSB2 MUTATED" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
  "WSB2 MUTATED" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" "WSB2 WILD-TYPE" 
    TCGA-IP-7968 
"WSB2 WILD-TYPE" 
[1] "hr=" "1.6"
D21V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  WSB2 MUTATED         1        1        1        2         1         0
  WSB2 WILD-TYPE       0        6       21       22        20        28
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  WSB2 MUTATED           0          0          1          0        0
  WSB2 WILD-TYPE         3         34         22         18       24
D21V3, multiclass
                vv
clus             T1 T2 T3 T4
  WSB2 MUTATED    2  3  1  1
  WSB2 WILD-TYPE  5 62 88 48
D21V4, multiclass
    clus
vv   WSB2 MUTATED WSB2 WILD-TYPE
  T1            2              5
  T2            3             62
  T3            1             88
  T4            1             48
                vv
clus             N0 N1 N2 N3
  WSB2 MUTATED    3  4  0  0
  WSB2 WILD-TYPE 67 61 35 38
D21V5, multiclass
    clus
vv   WSB2 MUTATED WSB2 WILD-TYPE
  N0            3             67
  N1            4             61
  N2            0             35
  N3            0             38
                vv
clus              M0  M1  MX
  WSB2 MUTATED     6   0   1
  WSB2 WILD-TYPE 188  16   8
D21V6, multiclass
    clus
vv   WSB2 MUTATED WSB2 WILD-TYPE
  M0            6            188
  M1            0             16
  MX            1              8
D21V7, binary
                cls
clus               0   1
  WSB2 MUTATED     1   6
  WSB2 WILD-TYPE  86 126
[1] "tbl2"
                cls
clus             [,1] [,2]
  WSB2 MUTATED      1    6
  WSB2 WILD-TYPE   86  126
        clus
vv       WSB2 MUTATED WSB2 WILD-TYPE
  FEMALE            1             86
  MALE              6            126
                vv
clus             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  WSB2 MUTATED                                       0
  WSB2 WILD-TYPE                                    31
                vv
clus             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  WSB2 MUTATED                                                        4
  WSB2 WILD-TYPE                                                    104
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  WSB2 MUTATED                                                                   2
  WSB2 WILD-TYPE                                                                32
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  WSB2 MUTATED                                                  0
  WSB2 WILD-TYPE                                               26
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  WSB2 MUTATED                                                          0
  WSB2 WILD-TYPE                                                       13
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  WSB2 MUTATED                                                           1
  WSB2 WILD-TYPE                                                         4
                vv
clus             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  WSB2 MUTATED                                          0
  WSB2 WILD-TYPE                                        1
D21V8, multiclass
D21V9, binary
                cls
clus               0   1
  WSB2 MUTATED     0   7
  WSB2 WILD-TYPE   6 206
[1] "tbl2"
                cls
clus             [,1] [,2]
  WSB2 MUTATED      0    7
  WSB2 WILD-TYPE    6  206
     clus
vv    WSB2 MUTATED WSB2 WILD-TYPE
  NO             0              6
  YES            7            206
                vv
clus              R0  R1  R2  RX
  WSB2 MUTATED     7   0   0   0
  WSB2 WILD-TYPE 164   6  10  23
D21V10, multiclass
    clus
vv   WSB2 MUTATED WSB2 WILD-TYPE
  R0            7            164
  R1            0              6
  R2            0             10
  RX            0             23
D21V11, continuous

Clustering(22) Variable = BCOR MUTATION ANALYSIS
D22V1, survival
                sevent
clus2              0   1
  BCOR MUTATED     9   5
  BCOR WILD-TYPE 150  25
  BCOR MUTATED BCOR WILD-TYPE 
            14            175 
  BCOR MUTATED BCOR WILD-TYPE 
             5             25 
$`BCOR MUTATED`
TCGA-B7-5816 TCGA-BR-4184 TCGA-BR-4280 TCGA-BR-6455 TCGA-BR-6707 TCGA-BR-7196 
        5.62         6.94         6.61        13.12        11.61         1.22 
TCGA-BR-7707 TCGA-BR-8366 TCGA-CG-4306 TCGA-CG-4455 TCGA-CG-5721 TCGA-CG-5724 
        0.13         0.56         1.02        12.03         5.98        12.03 
TCGA-HU-8604 TCGA-HU-A4GQ 
       12.10         0.10 

$`BCOR WILD-TYPE`
TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4201 TCGA-BR-4267 TCGA-BR-4279 TCGA-BR-6452 
        0.10         6.61        30.90         6.15         9.57         8.45 
TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 
       11.70         6.97        10.85         9.40         0.62        12.43 
TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
       13.81         2.17         1.12         0.76         0.66         0.26 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 
        1.48         0.46         1.05         0.82         0.69         0.16 
TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-8059 TCGA-BR-8077 
        4.54         0.99         0.95         0.69         0.82         0.69 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8360 
        0.49         0.46         0.72         1.55         1.48         0.20 
TCGA-BR-8361 TCGA-BR-8365 TCGA-BR-8367 TCGA-BR-8368 TCGA-BR-8370 TCGA-BR-8371 
        0.39         2.96         1.08         1.38         0.56         0.36 
TCGA-BR-8372 TCGA-BR-8373 TCGA-BR-8381 TCGA-BR-8382 TCGA-BR-8384 TCGA-BR-8484 
        0.59         0.85         0.26         0.43         0.69         0.69 
TCGA-BR-8485 TCGA-BR-8486 TCGA-BR-8588 TCGA-BR-8589 TCGA-BR-8590 TCGA-BR-8591 
        0.30         0.99         0.76         1.91         2.14         0.20 
TCGA-BR-8676 TCGA-BR-8677 TCGA-BR-8678 TCGA-BR-8679 TCGA-BR-8680 TCGA-BR-8682 
        0.89         0.49         0.16         0.16         0.79         1.64 
TCGA-BR-8683 TCGA-BR-8687 TCGA-BR-8690 TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ 
        0.59         0.62         0.59         0.92         0.39         0.79 
TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-BR-A4J6 TCGA-BR-A4J7 TCGA-BR-A4J8 TCGA-BR-A4QI 
        0.72         0.53         0.13         0.46         0.23         0.49 
TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 
        2.24         2.83         3.25        13.15        13.18         0.30 
TCGA-CD-5803 TCGA-CD-5813 TCGA-CD-8524 TCGA-CD-8525 TCGA-CD-8526 TCGA-CD-8528 
        0.07         0.39         0.07         0.07         0.07         0.10 
TCGA-CD-8529 TCGA-CD-8530 TCGA-CD-8531 TCGA-CD-8532 TCGA-CD-8535 TCGA-CD-A4MI 
        0.13         0.16         0.10         0.10         0.13         0.10 
TCGA-CD-A4MJ TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4436 
        0.10        20.02         3.02        27.02        15.95         7.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5717 
       19.07         8.98        18.94         7.07         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 
        1.02         1.02         0.99         0.95        70.06        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       31.04        65.10         4.01        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
       12.36        12.66        11.93        19.13        20.55        18.84 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
       18.54        18.61        17.85        13.35        17.19        10.26 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
       15.22        15.98        12.79        10.55        11.31        12.30 
TCGA-D7-8570 TCGA-D7-8572 TCGA-D7-8573 TCGA-D7-8574 TCGA-D7-8576 TCGA-D7-A4YT 
        7.99         0.85         3.88         4.18         3.19         4.24 
TCGA-D7-A4YU TCGA-D7-A4YV TCGA-D7-A4Z0 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        6.90         5.92         4.87         0.62         6.54         2.01 
TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 
       72.23         0.39         0.20         3.02         3.58         1.02 
TCGA-FP-8209 TCGA-HJ-7597 TCGA-HU-8243 TCGA-HU-8245 TCGA-HU-8610 TCGA-HU-A4G2 
       59.05        26.43         5.92        12.59         0.76        15.19 
TCGA-HU-A4GD TCGA-HU-A4GN TCGA-HU-A4GP TCGA-HU-A4GU TCGA-HU-A4H3 TCGA-HU-A4H4 
       14.10        21.04         8.98         6.25        19.36        17.69 
TCGA-HU-A4H5 TCGA-HU-A4H6 TCGA-IN-7806 TCGA-IN-7808 TCGA-IN-8462 TCGA-IN-8663 
       12.30         9.63         6.87         3.55        10.49         3.39 
TCGA-IP-7968 
        2.53 

  BCOR MUTATED BCOR WILD-TYPE 
          0.10           0.07 
  BCOR MUTATED BCOR WILD-TYPE 
         13.12          72.23 
  BCOR MUTATED BCOR WILD-TYPE 
         6.295          2.830 
[1] "0.1 - 13.1 (6.3)" "0.1 - 72.2 (2.8)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
  "BCOR MUTATED" "BCOR WILD-TYPE" "BCOR WILD-TYPE"   "BCOR MUTATED" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE"   "BCOR MUTATED" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
"BCOR WILD-TYPE"   "BCOR MUTATED" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
"BCOR WILD-TYPE" "BCOR WILD-TYPE"   "BCOR MUTATED" "BCOR WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE"   "BCOR MUTATED" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"BCOR WILD-TYPE" "BCOR WILD-TYPE"   "BCOR MUTATED" "BCOR WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"BCOR WILD-TYPE"   "BCOR MUTATED" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE"   "BCOR MUTATED" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
  "BCOR MUTATED" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"BCOR WILD-TYPE"   "BCOR MUTATED" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
  "BCOR MUTATED" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
  "BCOR MUTATED" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
"BCOR WILD-TYPE" "BCOR WILD-TYPE"   "BCOR MUTATED" "BCOR WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-IP-7968 
"BCOR WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
  "BCOR MUTATED" "BCOR WILD-TYPE" "BCOR WILD-TYPE"   "BCOR MUTATED" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE"   "BCOR MUTATED" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
"BCOR WILD-TYPE"   "BCOR MUTATED" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
"BCOR WILD-TYPE" "BCOR WILD-TYPE"   "BCOR MUTATED" "BCOR WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE"   "BCOR MUTATED" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"BCOR WILD-TYPE" "BCOR WILD-TYPE"   "BCOR MUTATED" "BCOR WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"BCOR WILD-TYPE"   "BCOR MUTATED" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE"   "BCOR MUTATED" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
  "BCOR MUTATED" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"BCOR WILD-TYPE"   "BCOR MUTATED" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
  "BCOR MUTATED" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
  "BCOR MUTATED" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
"BCOR WILD-TYPE" "BCOR WILD-TYPE"   "BCOR MUTATED" "BCOR WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-IP-7968 
"BCOR WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
  "BCOR MUTATED" "BCOR WILD-TYPE" "BCOR WILD-TYPE"   "BCOR MUTATED" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE"   "BCOR MUTATED" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
"BCOR WILD-TYPE"   "BCOR MUTATED" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
"BCOR WILD-TYPE" "BCOR WILD-TYPE"   "BCOR MUTATED" "BCOR WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE"   "BCOR MUTATED" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"BCOR WILD-TYPE" "BCOR WILD-TYPE"   "BCOR MUTATED" "BCOR WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"BCOR WILD-TYPE"   "BCOR MUTATED" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE"   "BCOR MUTATED" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
  "BCOR MUTATED" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"BCOR WILD-TYPE"   "BCOR MUTATED" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
  "BCOR MUTATED" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
  "BCOR MUTATED" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
"BCOR WILD-TYPE" "BCOR WILD-TYPE"   "BCOR MUTATED" "BCOR WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" "BCOR WILD-TYPE" 
    TCGA-IP-7968 
"BCOR WILD-TYPE" 
[1] "hr=" "3.5"
D22V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  BCOR MUTATED         0        1        1        1         3         1
  BCOR WILD-TYPE       1        6       21       23        18        27
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  BCOR MUTATED           1          3          0          1        4
  BCOR WILD-TYPE         2         31         23         17       20
D22V3, multiclass
                vv
clus             T1 T2 T3 T4
  BCOR MUTATED    0  4  8  4
  BCOR WILD-TYPE  7 61 81 45
D22V4, multiclass
    clus
vv   BCOR MUTATED BCOR WILD-TYPE
  T1            0              7
  T2            4             61
  T3            8             81
  T4            4             45
                vv
clus             N0 N1 N2 N3
  BCOR MUTATED    7  5  3  1
  BCOR WILD-TYPE 63 60 32 37
D22V5, multiclass
    clus
vv   BCOR MUTATED BCOR WILD-TYPE
  N0            7             63
  N1            5             60
  N2            3             32
  N3            1             37
                vv
clus              M0  M1  MX
  BCOR MUTATED    12   3   1
  BCOR WILD-TYPE 182  13   8
D22V6, multiclass
    clus
vv   BCOR MUTATED BCOR WILD-TYPE
  M0           12            182
  M1            3             13
  MX            1              8
D22V7, binary
                cls
clus               0   1
  BCOR MUTATED     6  10
  BCOR WILD-TYPE  81 122
[1] "tbl2"
                cls
clus             [,1] [,2]
  BCOR MUTATED      6   10
  BCOR WILD-TYPE   81  122
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  FEMALE            6             81
  MALE             10            122
                vv
clus             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  BCOR MUTATED                                       2
  BCOR WILD-TYPE                                    29
                vv
clus             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  BCOR MUTATED                                                        9
  BCOR WILD-TYPE                                                     99
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  BCOR MUTATED                                                                   2
  BCOR WILD-TYPE                                                                32
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  BCOR MUTATED                                                  2
  BCOR WILD-TYPE                                               24
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  BCOR MUTATED                                                          1
  BCOR WILD-TYPE                                                       12
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  BCOR MUTATED                                                           0
  BCOR WILD-TYPE                                                         5
                vv
clus             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  BCOR MUTATED                                          0
  BCOR WILD-TYPE                                        1
D22V8, multiclass
D22V9, binary
                cls
clus               0   1
  BCOR MUTATED     0  16
  BCOR WILD-TYPE   6 197
[1] "tbl2"
                cls
clus             [,1] [,2]
  BCOR MUTATED      0   16
  BCOR WILD-TYPE    6  197
     clus
vv    BCOR MUTATED BCOR WILD-TYPE
  NO             0              6
  YES           16            197
                vv
clus              R0  R1  R2  RX
  BCOR MUTATED    11   0   2   3
  BCOR WILD-TYPE 160   6   8  20
D22V10, multiclass
    clus
vv   BCOR MUTATED BCOR WILD-TYPE
  R0           11            160
  R1            0              6
  R2            2              8
  RX            3             20
D22V11, continuous

Clustering(23) Variable = TRPS1 MUTATION ANALYSIS
D23V1, survival
                 sevent
clus2               0   1
  TRPS1 MUTATED    21   5
  TRPS1 WILD-TYPE 138  25
  TRPS1 MUTATED TRPS1 WILD-TYPE 
             26             163 
  TRPS1 MUTATED TRPS1 WILD-TYPE 
              5              25 
$`TRPS1 MUTATED`
TCGA-B7-5816 TCGA-BR-4184 TCGA-BR-4201 TCGA-BR-6452 TCGA-BR-6563 TCGA-BR-7715 
        5.62         6.94        30.90         8.45        10.85         1.05 
TCGA-BR-7716 TCGA-BR-7901 TCGA-BR-8372 TCGA-BR-8591 TCGA-BR-8680 TCGA-BR-8690 
        0.82         0.95         0.59         0.20         0.79         0.59 
TCGA-BR-A4QI TCGA-CG-4300 TCGA-CG-4466 TCGA-CG-5721 TCGA-CG-5728 TCGA-CG-5732 
        0.49        20.02        18.94         5.98        65.10        55.04 
TCGA-D7-5577 TCGA-D7-A4YT TCGA-D7-A4Z0 TCGA-F1-6177 TCGA-FP-7829 TCGA-HU-A4GU 
       12.36         4.24         4.87         6.54         0.20         6.25 
TCGA-HU-A4H3 TCGA-IN-8663 
       19.36         3.39 

$`TRPS1 WILD-TYPE`
TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4267 TCGA-BR-4279 TCGA-BR-4280 TCGA-BR-6455 
        0.10         6.61         6.15         9.57         6.61        13.12 
TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 
       11.70         6.97         9.40         0.62        12.43        13.81 
TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        2.17        11.61         1.12         0.76         0.66         0.26 
TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7717 TCGA-BR-7722 
        1.22         1.48         0.46         0.13         0.69         0.16 
TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-8059 TCGA-BR-8077 TCGA-BR-8080 
        4.54         0.99         0.69         0.82         0.69         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8360 TCGA-BR-8361 
        0.46         0.72         1.55         1.48         0.20         0.39 
TCGA-BR-8365 TCGA-BR-8366 TCGA-BR-8367 TCGA-BR-8368 TCGA-BR-8370 TCGA-BR-8371 
        2.96         0.56         1.08         1.38         0.56         0.36 
TCGA-BR-8373 TCGA-BR-8381 TCGA-BR-8382 TCGA-BR-8384 TCGA-BR-8484 TCGA-BR-8485 
        0.85         0.26         0.43         0.69         0.69         0.30 
TCGA-BR-8486 TCGA-BR-8588 TCGA-BR-8589 TCGA-BR-8590 TCGA-BR-8676 TCGA-BR-8677 
        0.99         0.76         1.91         2.14         0.89         0.49 
TCGA-BR-8678 TCGA-BR-8679 TCGA-BR-8682 TCGA-BR-8683 TCGA-BR-8687 TCGA-BR-A4IV 
        0.16         0.16         1.64         0.59         0.62         0.92 
TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-BR-A4J6 TCGA-BR-A4J7 
        0.39         0.79         0.72         0.53         0.13         0.46 
TCGA-BR-A4J8 TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 
        0.23         2.24         2.83         3.25        13.15        13.18 
TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CD-8524 TCGA-CD-8525 TCGA-CD-8526 
        0.30         0.07         0.39         0.07         0.07         0.07 
TCGA-CD-8528 TCGA-CD-8529 TCGA-CD-8530 TCGA-CD-8531 TCGA-CD-8532 TCGA-CD-8535 
        0.10         0.13         0.16         0.10         0.10         0.13 
TCGA-CD-A4MI TCGA-CD-A4MJ TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.10         0.10         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
        7.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4477 
       47.05        19.07        12.03         8.98         7.07         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 
        6.94         1.02         1.02         0.99         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 
       12.03        28.96        31.04         4.01        21.07         7.99 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
       12.66        11.93        19.13        20.55        18.84        18.54 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
       18.61        17.85        13.35        17.19        10.26        15.22 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-D7-8570 
       15.98        12.79        10.55        11.31        12.30         7.99 
TCGA-D7-8572 TCGA-D7-8573 TCGA-D7-8574 TCGA-D7-8576 TCGA-D7-A4YU TCGA-D7-A4YV 
        0.85         3.88         4.18         3.19         6.90         5.92 
TCGA-EQ-5647 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 
        0.62         2.01        72.23         0.39         3.02         3.58 
TCGA-FP-8099 TCGA-FP-8209 TCGA-HJ-7597 TCGA-HU-8243 TCGA-HU-8245 TCGA-HU-8604 
        1.02        59.05        26.43         5.92        12.59        12.10 
TCGA-HU-8610 TCGA-HU-A4G2 TCGA-HU-A4GD TCGA-HU-A4GN TCGA-HU-A4GP TCGA-HU-A4GQ 
        0.76        15.19        14.10        21.04         8.98         0.10 
TCGA-HU-A4H4 TCGA-HU-A4H5 TCGA-HU-A4H6 TCGA-IN-7806 TCGA-IN-7808 TCGA-IN-8462 
       17.69        12.30         9.63         6.87         3.55        10.49 
TCGA-IP-7968 
        2.53 

  TRPS1 MUTATED TRPS1 WILD-TYPE 
           0.20            0.07 
  TRPS1 MUTATED TRPS1 WILD-TYPE 
          65.10           72.23 
  TRPS1 MUTATED TRPS1 WILD-TYPE 
           5.80            2.24 
[1] "0.2 - 65.1 (5.8)" "0.1 - 72.2 (2.2)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-BR-4201      TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-6452      TCGA-BR-6455      TCGA-BR-6457      TCGA-BR-6458 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6801 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7707      TCGA-BR-7715 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-8059 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-8077      TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8360      TCGA-BR-8361 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8484 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588      TCGA-BR-8589 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8676      TCGA-BR-8677 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A4IV 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J4 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4QI 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-BR-A4QL      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8528 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8576      TCGA-D7-A4YT 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4Z0      TCGA-EQ-5647 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-FP-7735 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-FP-8209      TCGA-HJ-7597      TCGA-HU-8243      TCGA-HU-8245 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4GD 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ      TCGA-HU-A4GU 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-IP-7968 
"TRPS1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-BR-4201      TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-6452      TCGA-BR-6455      TCGA-BR-6457      TCGA-BR-6458 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6801 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7707      TCGA-BR-7715 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-8059 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-8077      TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8360      TCGA-BR-8361 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8484 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588      TCGA-BR-8589 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8676      TCGA-BR-8677 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A4IV 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J4 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4QI 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-BR-A4QL      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8528 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8576      TCGA-D7-A4YT 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4Z0      TCGA-EQ-5647 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-FP-7735 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-FP-8209      TCGA-HJ-7597      TCGA-HU-8243      TCGA-HU-8245 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4GD 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ      TCGA-HU-A4GU 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-IP-7968 
"TRPS1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-BR-4201      TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-6452      TCGA-BR-6455      TCGA-BR-6457      TCGA-BR-6458 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6801 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7707      TCGA-BR-7715 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-8059 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-8077      TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8360      TCGA-BR-8361 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8484 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588      TCGA-BR-8589 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8676      TCGA-BR-8677 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A4IV 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J4 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4QI 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-BR-A4QL      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8528 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8576      TCGA-D7-A4YT 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4Z0      TCGA-EQ-5647 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-FP-7735 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-FP-8209      TCGA-HJ-7597      TCGA-HU-8243      TCGA-HU-8245 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4GD 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ      TCGA-HU-A4GU 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-IP-7968 
"TRPS1 WILD-TYPE" 
[1] "hr=" "1"  
D23V2, continuous
                 vv
clus              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  TRPS1 MUTATED         1        0        4        0         4         5
  TRPS1 WILD-TYPE       0        7       18       24        17        23
                 vv
clus              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  TRPS1 MUTATED           0          4          2          3        4
  TRPS1 WILD-TYPE         3         30         21         15       20
D23V3, multiclass
                 vv
clus              T1 T2 T3 T4
  TRPS1 MUTATED    1  9 11  7
  TRPS1 WILD-TYPE  6 56 78 42
D23V4, multiclass
    clus
vv   TRPS1 MUTATED TRPS1 WILD-TYPE
  T1             1               6
  T2             9              56
  T3            11              78
  T4             7              42
                 vv
clus              N0 N1 N2 N3
  TRPS1 MUTATED    8 10  4  6
  TRPS1 WILD-TYPE 62 55 31 32
D23V5, multiclass
    clus
vv   TRPS1 MUTATED TRPS1 WILD-TYPE
  N0             8              62
  N1            10              55
  N2             4              31
  N3             6              32
                 vv
clus               M0  M1  MX
  TRPS1 MUTATED    27   1   2
  TRPS1 WILD-TYPE 167  15   7
D23V6, multiclass
    clus
vv   TRPS1 MUTATED TRPS1 WILD-TYPE
  M0            27             167
  M1             1              15
  MX             2               7
D23V7, binary
                 cls
clus                0   1
  TRPS1 MUTATED    14  16
  TRPS1 WILD-TYPE  73 116
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPS1 MUTATED     14   16
  TRPS1 WILD-TYPE   73  116
        clus
vv       TRPS1 MUTATED TRPS1 WILD-TYPE
  FEMALE            14              73
  MALE              16             116
                 vv
clus              STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  TRPS1 MUTATED                                       3
  TRPS1 WILD-TYPE                                    28
                 vv
clus              STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  TRPS1 MUTATED                                                       18
  TRPS1 WILD-TYPE                                                     90
                 vv
clus              STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  TRPS1 MUTATED                                                                   5
  TRPS1 WILD-TYPE                                                                29
                 vv
clus              STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  TRPS1 MUTATED                                                  3
  TRPS1 WILD-TYPE                                               23
                 vv
clus              STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  TRPS1 MUTATED                                                          1
  TRPS1 WILD-TYPE                                                       12
                 vv
clus              STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  TRPS1 MUTATED                                                           0
  TRPS1 WILD-TYPE                                                         5
                 vv
clus              STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  TRPS1 MUTATED                                          0
  TRPS1 WILD-TYPE                                        1
D23V8, multiclass
D23V9, binary
                 cls
clus                0   1
  TRPS1 MUTATED     0  30
  TRPS1 WILD-TYPE   6 183
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPS1 MUTATED      0   30
  TRPS1 WILD-TYPE    6  183
     clus
vv    TRPS1 MUTATED TRPS1 WILD-TYPE
  NO              0               6
  YES            30             183
                 vv
clus               R0  R1  R2  RX
  TRPS1 MUTATED    25   0   0   5
  TRPS1 WILD-TYPE 146   6  10  18
D23V10, multiclass
    clus
vv   TRPS1 MUTATED TRPS1 WILD-TYPE
  R0            25             146
  R1             0               6
  R2             0              10
  RX             5              18
D23V11, continuous

Clustering(24) Variable = C13ORF33 MUTATION ANALYSIS
D24V1, survival
                    sevent
clus2                  0   1
  C13ORF33 MUTATED     4   1
  C13ORF33 WILD-TYPE 155  29
  C13ORF33 MUTATED C13ORF33 WILD-TYPE 
                 5                184 
  C13ORF33 MUTATED C13ORF33 WILD-TYPE 
                 1                 29 
$`C13ORF33 MUTATED`
TCGA-BR-8361 TCGA-BR-8591 TCGA-BR-A4QL TCGA-HU-A4GQ TCGA-HU-A4H3 
        0.39         0.20         2.24         0.10        19.36 

$`C13ORF33 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4184 TCGA-BR-4201 TCGA-BR-4267 
        5.62         0.10         6.61         6.94        30.90         6.15 
TCGA-BR-4279 TCGA-BR-4280 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        9.57         6.61         8.45        13.12        11.70         6.97 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 
       10.85         9.40         0.62        12.43        13.81         2.17 
TCGA-BR-6707 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
       11.61         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 
        1.48         0.46         0.13         1.05         0.82         0.69 
TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-8059 
        0.16         4.54         0.99         0.95         0.69         0.82 
TCGA-BR-8077 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8295 TCGA-BR-8296 
        0.69         0.49         0.46         0.72         1.55         1.48 
TCGA-BR-8360 TCGA-BR-8365 TCGA-BR-8366 TCGA-BR-8367 TCGA-BR-8368 TCGA-BR-8370 
        0.20         2.96         0.56         1.08         1.38         0.56 
TCGA-BR-8371 TCGA-BR-8372 TCGA-BR-8373 TCGA-BR-8381 TCGA-BR-8382 TCGA-BR-8384 
        0.36         0.59         0.85         0.26         0.43         0.69 
TCGA-BR-8484 TCGA-BR-8485 TCGA-BR-8486 TCGA-BR-8588 TCGA-BR-8589 TCGA-BR-8590 
        0.69         0.30         0.99         0.76         1.91         2.14 
TCGA-BR-8676 TCGA-BR-8677 TCGA-BR-8678 TCGA-BR-8679 TCGA-BR-8680 TCGA-BR-8682 
        0.89         0.49         0.16         0.16         0.79         1.64 
TCGA-BR-8683 TCGA-BR-8687 TCGA-BR-8690 TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ 
        0.59         0.62         0.59         0.92         0.39         0.79 
TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-BR-A4J6 TCGA-BR-A4J7 TCGA-BR-A4J8 TCGA-BR-A4QI 
        0.72         0.53         0.13         0.46         0.23         0.49 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        2.83         3.25        13.15        13.18         0.30         0.07 
TCGA-CD-5813 TCGA-CD-8524 TCGA-CD-8525 TCGA-CD-8526 TCGA-CD-8528 TCGA-CD-8529 
        0.39         0.07         0.07         0.07         0.10         0.13 
TCGA-CD-8530 TCGA-CD-8531 TCGA-CD-8532 TCGA-CD-8535 TCGA-CD-A4MI TCGA-CD-A4MJ 
        0.16         0.10         0.10         0.13         0.10         0.10 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02         7.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4477 
       19.07        12.03         8.98        18.94         7.07         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        6.94         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       70.06        12.03        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99        12.36        12.66        11.93 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
       19.13        20.55        18.84        18.54        18.61        17.85 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
       13.35        17.19        10.26        15.22        15.98        12.79 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-D7-8570 TCGA-D7-8572 TCGA-D7-8573 
       10.55        11.31        12.30         7.99         0.85         3.88 
TCGA-D7-8574 TCGA-D7-8576 TCGA-D7-A4YT TCGA-D7-A4YU TCGA-D7-A4YV TCGA-D7-A4Z0 
        4.18         3.19         4.24         6.90         5.92         4.87 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 
        0.62         6.54         2.01        72.23         0.39         0.20 
TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-HJ-7597 TCGA-HU-8243 
        3.02         3.58         1.02        59.05        26.43         5.92 
TCGA-HU-8245 TCGA-HU-8604 TCGA-HU-8610 TCGA-HU-A4G2 TCGA-HU-A4GD TCGA-HU-A4GN 
       12.59        12.10         0.76        15.19        14.10        21.04 
TCGA-HU-A4GP TCGA-HU-A4GU TCGA-HU-A4H4 TCGA-HU-A4H5 TCGA-HU-A4H6 TCGA-IN-7806 
        8.98         6.25        17.69        12.30         9.63         6.87 
TCGA-IN-7808 TCGA-IN-8462 TCGA-IN-8663 TCGA-IP-7968 
        3.55        10.49         3.39         2.53 

  C13ORF33 MUTATED C13ORF33 WILD-TYPE 
              0.10               0.07 
  C13ORF33 MUTATED C13ORF33 WILD-TYPE 
             19.36              72.23 
  C13ORF33 MUTATED C13ORF33 WILD-TYPE 
             0.390              3.105 
[1] "0.1 - 19.4 (0.4)" "0.1 - 72.2 (3.1)"
        TCGA-B7-5816         TCGA-B7-5818         TCGA-BR-4183 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-4184         TCGA-BR-4201         TCGA-BR-4267 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-4279         TCGA-BR-4280         TCGA-BR-6452 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6457         TCGA-BR-6458 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-6563         TCGA-BR-6564         TCGA-BR-6565 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-6566         TCGA-BR-6705         TCGA-BR-6706 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-6707         TCGA-BR-6801         TCGA-BR-6802 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-6803         TCGA-BR-6852         TCGA-BR-7196 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-7197         TCGA-BR-7703         TCGA-BR-7707 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-7715         TCGA-BR-7716         TCGA-BR-7717 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-7722         TCGA-BR-7723         TCGA-BR-7851 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-7901         TCGA-BR-7957         TCGA-BR-8059 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8077         TCGA-BR-8080         TCGA-BR-8081 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8284         TCGA-BR-8295         TCGA-BR-8296 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8360         TCGA-BR-8361         TCGA-BR-8365 
"C13ORF33 WILD-TYPE"   "C13ORF33 MUTATED" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8366         TCGA-BR-8367         TCGA-BR-8368 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8370         TCGA-BR-8371         TCGA-BR-8372 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8373         TCGA-BR-8381         TCGA-BR-8382 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8384         TCGA-BR-8484         TCGA-BR-8485 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8486         TCGA-BR-8588         TCGA-BR-8589 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8590         TCGA-BR-8591         TCGA-BR-8676 
"C13ORF33 WILD-TYPE"   "C13ORF33 MUTATED" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8677         TCGA-BR-8678         TCGA-BR-8679 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8680         TCGA-BR-8682         TCGA-BR-8683 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8687         TCGA-BR-8690         TCGA-BR-A4IV 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-A4IY         TCGA-BR-A4IZ         TCGA-BR-A4J1 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-A4J4         TCGA-BR-A4J6         TCGA-BR-A4J7 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-A4J8         TCGA-BR-A4QI         TCGA-BR-A4QL 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE"   "C13ORF33 MUTATED" 
        TCGA-CD-5798         TCGA-CD-5799         TCGA-CD-5800 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CD-5801         TCGA-CD-5802         TCGA-CD-5803 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CD-8524         TCGA-CD-8525 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CD-8526         TCGA-CD-8528         TCGA-CD-8529 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CD-8530         TCGA-CD-8531         TCGA-CD-8532 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CD-8535         TCGA-CD-A4MI         TCGA-CD-A4MJ 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-4300         TCGA-CG-4301         TCGA-CG-4304 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-4305         TCGA-CG-4306         TCGA-CG-4436 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-4437         TCGA-CG-4438         TCGA-CG-4440 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-4441         TCGA-CG-4443         TCGA-CG-4444 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-4449         TCGA-CG-4455         TCGA-CG-4465 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-4466         TCGA-CG-4469         TCGA-CG-4477 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5726 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-5727         TCGA-CG-5728         TCGA-CG-5730 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-5732         TCGA-CG-5733         TCGA-CG-5734 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-D7-5577         TCGA-D7-5578         TCGA-D7-5579 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-D7-6518         TCGA-D7-6519         TCGA-D7-6520 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-D7-6521         TCGA-D7-6522         TCGA-D7-6524 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-D7-6525         TCGA-D7-6526         TCGA-D7-6527 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-D7-6528         TCGA-D7-6815         TCGA-D7-6817 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-D7-6818         TCGA-D7-6820         TCGA-D7-6822 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-D7-8570         TCGA-D7-8572         TCGA-D7-8573 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-D7-8574         TCGA-D7-8576         TCGA-D7-A4YT 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-D7-A4YU         TCGA-D7-A4YV         TCGA-D7-A4Z0 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-EQ-5647         TCGA-F1-6177         TCGA-F1-6874 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-F1-6875         TCGA-FP-7735         TCGA-FP-7829 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-FP-7916         TCGA-FP-7998         TCGA-FP-8099 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-FP-8209         TCGA-HJ-7597         TCGA-HU-8243 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-HU-8245         TCGA-HU-8604         TCGA-HU-8610 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-HU-A4G2         TCGA-HU-A4GD         TCGA-HU-A4GN 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-HU-A4GP         TCGA-HU-A4GQ         TCGA-HU-A4GU 
"C13ORF33 WILD-TYPE"   "C13ORF33 MUTATED" "C13ORF33 WILD-TYPE" 
        TCGA-HU-A4H3         TCGA-HU-A4H4         TCGA-HU-A4H5 
  "C13ORF33 MUTATED" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-HU-A4H6         TCGA-IN-7806         TCGA-IN-7808 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-IN-8462         TCGA-IN-8663         TCGA-IP-7968 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-BR-4183 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-4184         TCGA-BR-4201         TCGA-BR-4267 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-4279         TCGA-BR-4280         TCGA-BR-6452 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6457         TCGA-BR-6458 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-6563         TCGA-BR-6564         TCGA-BR-6565 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-6566         TCGA-BR-6705         TCGA-BR-6706 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-6707         TCGA-BR-6801         TCGA-BR-6802 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-6803         TCGA-BR-6852         TCGA-BR-7196 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-7197         TCGA-BR-7703         TCGA-BR-7707 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-7715         TCGA-BR-7716         TCGA-BR-7717 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-7722         TCGA-BR-7723         TCGA-BR-7851 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-7901         TCGA-BR-7957         TCGA-BR-8059 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8077         TCGA-BR-8080         TCGA-BR-8081 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8284         TCGA-BR-8295         TCGA-BR-8296 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8360         TCGA-BR-8361         TCGA-BR-8365 
"C13ORF33 WILD-TYPE"   "C13ORF33 MUTATED" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8366         TCGA-BR-8367         TCGA-BR-8368 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8370         TCGA-BR-8371         TCGA-BR-8372 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8373         TCGA-BR-8381         TCGA-BR-8382 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8384         TCGA-BR-8484         TCGA-BR-8485 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8486         TCGA-BR-8588         TCGA-BR-8589 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8590         TCGA-BR-8591         TCGA-BR-8676 
"C13ORF33 WILD-TYPE"   "C13ORF33 MUTATED" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8677         TCGA-BR-8678         TCGA-BR-8679 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8680         TCGA-BR-8682         TCGA-BR-8683 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8687         TCGA-BR-8690         TCGA-BR-A4IV 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-A4IY         TCGA-BR-A4IZ         TCGA-BR-A4J1 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-A4J4         TCGA-BR-A4J6         TCGA-BR-A4J7 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-A4J8         TCGA-BR-A4QI         TCGA-BR-A4QL 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE"   "C13ORF33 MUTATED" 
        TCGA-CD-5798         TCGA-CD-5799         TCGA-CD-5800 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CD-5801         TCGA-CD-5802         TCGA-CD-5803 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CD-8524         TCGA-CD-8525 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CD-8526         TCGA-CD-8528         TCGA-CD-8529 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CD-8530         TCGA-CD-8531         TCGA-CD-8532 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CD-8535         TCGA-CD-A4MI         TCGA-CD-A4MJ 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-4300         TCGA-CG-4301         TCGA-CG-4304 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-4305         TCGA-CG-4306         TCGA-CG-4436 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-4437         TCGA-CG-4438         TCGA-CG-4440 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-4441         TCGA-CG-4443         TCGA-CG-4444 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-4449         TCGA-CG-4455         TCGA-CG-4465 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-4466         TCGA-CG-4469         TCGA-CG-4477 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5726 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-5727         TCGA-CG-5728         TCGA-CG-5730 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-5732         TCGA-CG-5733         TCGA-CG-5734 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-D7-5577         TCGA-D7-5578         TCGA-D7-5579 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-D7-6518         TCGA-D7-6519         TCGA-D7-6520 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-D7-6521         TCGA-D7-6522         TCGA-D7-6524 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-D7-6525         TCGA-D7-6526         TCGA-D7-6527 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-D7-6528         TCGA-D7-6815         TCGA-D7-6817 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-D7-6818         TCGA-D7-6820         TCGA-D7-6822 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-D7-8570         TCGA-D7-8572         TCGA-D7-8573 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-D7-8574         TCGA-D7-8576         TCGA-D7-A4YT 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-D7-A4YU         TCGA-D7-A4YV         TCGA-D7-A4Z0 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-EQ-5647         TCGA-F1-6177         TCGA-F1-6874 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-F1-6875         TCGA-FP-7735         TCGA-FP-7829 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-FP-7916         TCGA-FP-7998         TCGA-FP-8099 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-FP-8209         TCGA-HJ-7597         TCGA-HU-8243 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-HU-8245         TCGA-HU-8604         TCGA-HU-8610 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-HU-A4G2         TCGA-HU-A4GD         TCGA-HU-A4GN 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-HU-A4GP         TCGA-HU-A4GQ         TCGA-HU-A4GU 
"C13ORF33 WILD-TYPE"   "C13ORF33 MUTATED" "C13ORF33 WILD-TYPE" 
        TCGA-HU-A4H3         TCGA-HU-A4H4         TCGA-HU-A4H5 
  "C13ORF33 MUTATED" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-HU-A4H6         TCGA-IN-7806         TCGA-IN-7808 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-IN-8462         TCGA-IN-8663         TCGA-IP-7968 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-BR-4183 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-4184         TCGA-BR-4201         TCGA-BR-4267 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-4279         TCGA-BR-4280         TCGA-BR-6452 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6457         TCGA-BR-6458 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-6563         TCGA-BR-6564         TCGA-BR-6565 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-6566         TCGA-BR-6705         TCGA-BR-6706 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-6707         TCGA-BR-6801         TCGA-BR-6802 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-6803         TCGA-BR-6852         TCGA-BR-7196 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-7197         TCGA-BR-7703         TCGA-BR-7707 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-7715         TCGA-BR-7716         TCGA-BR-7717 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-7722         TCGA-BR-7723         TCGA-BR-7851 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-7901         TCGA-BR-7957         TCGA-BR-8059 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8077         TCGA-BR-8080         TCGA-BR-8081 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8284         TCGA-BR-8295         TCGA-BR-8296 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8360         TCGA-BR-8361         TCGA-BR-8365 
"C13ORF33 WILD-TYPE"   "C13ORF33 MUTATED" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8366         TCGA-BR-8367         TCGA-BR-8368 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8370         TCGA-BR-8371         TCGA-BR-8372 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8373         TCGA-BR-8381         TCGA-BR-8382 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8384         TCGA-BR-8484         TCGA-BR-8485 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8486         TCGA-BR-8588         TCGA-BR-8589 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8590         TCGA-BR-8591         TCGA-BR-8676 
"C13ORF33 WILD-TYPE"   "C13ORF33 MUTATED" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8677         TCGA-BR-8678         TCGA-BR-8679 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8680         TCGA-BR-8682         TCGA-BR-8683 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-8687         TCGA-BR-8690         TCGA-BR-A4IV 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-A4IY         TCGA-BR-A4IZ         TCGA-BR-A4J1 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-A4J4         TCGA-BR-A4J6         TCGA-BR-A4J7 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-BR-A4J8         TCGA-BR-A4QI         TCGA-BR-A4QL 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE"   "C13ORF33 MUTATED" 
        TCGA-CD-5798         TCGA-CD-5799         TCGA-CD-5800 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CD-5801         TCGA-CD-5802         TCGA-CD-5803 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CD-8524         TCGA-CD-8525 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CD-8526         TCGA-CD-8528         TCGA-CD-8529 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CD-8530         TCGA-CD-8531         TCGA-CD-8532 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CD-8535         TCGA-CD-A4MI         TCGA-CD-A4MJ 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-4300         TCGA-CG-4301         TCGA-CG-4304 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-4305         TCGA-CG-4306         TCGA-CG-4436 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-4437         TCGA-CG-4438         TCGA-CG-4440 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-4441         TCGA-CG-4443         TCGA-CG-4444 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-4449         TCGA-CG-4455         TCGA-CG-4465 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-4466         TCGA-CG-4469         TCGA-CG-4477 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5726 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-5727         TCGA-CG-5728         TCGA-CG-5730 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-CG-5732         TCGA-CG-5733         TCGA-CG-5734 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-D7-5577         TCGA-D7-5578         TCGA-D7-5579 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-D7-6518         TCGA-D7-6519         TCGA-D7-6520 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-D7-6521         TCGA-D7-6522         TCGA-D7-6524 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-D7-6525         TCGA-D7-6526         TCGA-D7-6527 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-D7-6528         TCGA-D7-6815         TCGA-D7-6817 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-D7-6818         TCGA-D7-6820         TCGA-D7-6822 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-D7-8570         TCGA-D7-8572         TCGA-D7-8573 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-D7-8574         TCGA-D7-8576         TCGA-D7-A4YT 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-D7-A4YU         TCGA-D7-A4YV         TCGA-D7-A4Z0 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-EQ-5647         TCGA-F1-6177         TCGA-F1-6874 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-F1-6875         TCGA-FP-7735         TCGA-FP-7829 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-FP-7916         TCGA-FP-7998         TCGA-FP-8099 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-FP-8209         TCGA-HJ-7597         TCGA-HU-8243 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-HU-8245         TCGA-HU-8604         TCGA-HU-8610 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-HU-A4G2         TCGA-HU-A4GD         TCGA-HU-A4GN 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-HU-A4GP         TCGA-HU-A4GQ         TCGA-HU-A4GU 
"C13ORF33 WILD-TYPE"   "C13ORF33 MUTATED" "C13ORF33 WILD-TYPE" 
        TCGA-HU-A4H3         TCGA-HU-A4H4         TCGA-HU-A4H5 
  "C13ORF33 MUTATED" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-HU-A4H6         TCGA-IN-7806         TCGA-IN-7808 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
        TCGA-IN-8462         TCGA-IN-8663         TCGA-IP-7968 
"C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" "C13ORF33 WILD-TYPE" 
[1] "hr=" "2.6"
D24V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  C13ORF33 MUTATED         0        0        0        1         0         0
  C13ORF33 WILD-TYPE       1        7       22       23        21        28
                    vv
clus                 STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  C13ORF33 MUTATED           0          0          1          4        0
  C13ORF33 WILD-TYPE         3         34         22         14       24
D24V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  C13ORF33 MUTATED    0  1  1  4
  C13ORF33 WILD-TYPE  7 64 88 45
D24V4, multiclass
    clus
vv   C13ORF33 MUTATED C13ORF33 WILD-TYPE
  T1                0                  7
  T2                1                 64
  T3                1                 88
  T4                4                 45
                    vv
clus                 N0 N1 N2 N3
  C13ORF33 MUTATED    0  1  2  3
  C13ORF33 WILD-TYPE 70 64 33 35
D24V5, multiclass
    clus
vv   C13ORF33 MUTATED C13ORF33 WILD-TYPE
  N0                0                 70
  N1                1                 64
  N2                2                 33
  N3                3                 35
                    vv
clus                  M0  M1  MX
  C13ORF33 MUTATED     6   0   0
  C13ORF33 WILD-TYPE 188  16   9
D24V6, multiclass
    clus
vv   C13ORF33 MUTATED C13ORF33 WILD-TYPE
  M0                6                188
  M1                0                 16
  MX                0                  9
D24V7, binary
                    cls
clus                   0   1
  C13ORF33 MUTATED     3   3
  C13ORF33 WILD-TYPE  84 129
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C13ORF33 MUTATED      3    3
  C13ORF33 WILD-TYPE   84  129
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  FEMALE                3                 84
  MALE                  3                129
                    vv
clus                 STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  C13ORF33 MUTATED                                       1
  C13ORF33 WILD-TYPE                                    30
                    vv
clus                 STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  C13ORF33 MUTATED                                                        3
  C13ORF33 WILD-TYPE                                                    105
                    vv
clus                 STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  C13ORF33 MUTATED                                                                   0
  C13ORF33 WILD-TYPE                                                                34
                    vv
clus                 STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  C13ORF33 MUTATED                                                  1
  C13ORF33 WILD-TYPE                                               25
                    vv
clus                 STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  C13ORF33 MUTATED                                                          1
  C13ORF33 WILD-TYPE                                                       12
                    vv
clus                 STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  C13ORF33 MUTATED                                                           0
  C13ORF33 WILD-TYPE                                                         5
                    vv
clus                 STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  C13ORF33 MUTATED                                          0
  C13ORF33 WILD-TYPE                                        1
D24V8, multiclass
D24V9, binary
                    cls
clus                   0   1
  C13ORF33 MUTATED     1   5
  C13ORF33 WILD-TYPE   5 208
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C13ORF33 MUTATED      1    5
  C13ORF33 WILD-TYPE    5  208
     clus
vv    C13ORF33 MUTATED C13ORF33 WILD-TYPE
  NO                 1                  5
  YES                5                208
                    vv
clus                  R0  R1  R2  RX
  C13ORF33 MUTATED     6   0   0   0
  C13ORF33 WILD-TYPE 165   6  10  23
D24V10, multiclass
    clus
vv   C13ORF33 MUTATED C13ORF33 WILD-TYPE
  R0                6                165
  R1                0                  6
  R2                0                 10
  RX                0                 23
D24V11, continuous

Clustering(25) Variable = HRCT1 MUTATION ANALYSIS
D25V1, survival
                 sevent
clus2               0   1
  HRCT1 MUTATED     4   0
  HRCT1 WILD-TYPE 155  30
  HRCT1 MUTATED HRCT1 WILD-TYPE 
              4             185 
  HRCT1 MUTATED HRCT1 WILD-TYPE 
              0              30 
$`HRCT1 MUTATED`
TCGA-BR-8077 TCGA-BR-8384 TCGA-CD-8535 TCGA-HU-A4GD 
        0.69         0.69         0.13        14.10 

$`HRCT1 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4184 TCGA-BR-4201 TCGA-BR-4267 
        5.62         0.10         6.61         6.94        30.90         6.15 
TCGA-BR-4279 TCGA-BR-4280 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        9.57         6.61         8.45        13.12        11.70         6.97 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 
       10.85         9.40         0.62        12.43        13.81         2.17 
TCGA-BR-6707 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
       11.61         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 
        1.48         0.46         0.13         1.05         0.82         0.69 
TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-8059 
        0.16         4.54         0.99         0.95         0.69         0.82 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8360 
        0.49         0.46         0.72         1.55         1.48         0.20 
TCGA-BR-8361 TCGA-BR-8365 TCGA-BR-8366 TCGA-BR-8367 TCGA-BR-8368 TCGA-BR-8370 
        0.39         2.96         0.56         1.08         1.38         0.56 
TCGA-BR-8371 TCGA-BR-8372 TCGA-BR-8373 TCGA-BR-8381 TCGA-BR-8382 TCGA-BR-8484 
        0.36         0.59         0.85         0.26         0.43         0.69 
TCGA-BR-8485 TCGA-BR-8486 TCGA-BR-8588 TCGA-BR-8589 TCGA-BR-8590 TCGA-BR-8591 
        0.30         0.99         0.76         1.91         2.14         0.20 
TCGA-BR-8676 TCGA-BR-8677 TCGA-BR-8678 TCGA-BR-8679 TCGA-BR-8680 TCGA-BR-8682 
        0.89         0.49         0.16         0.16         0.79         1.64 
TCGA-BR-8683 TCGA-BR-8687 TCGA-BR-8690 TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ 
        0.59         0.62         0.59         0.92         0.39         0.79 
TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-BR-A4J6 TCGA-BR-A4J7 TCGA-BR-A4J8 TCGA-BR-A4QI 
        0.72         0.53         0.13         0.46         0.23         0.49 
TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 
        2.24         2.83         3.25        13.15        13.18         0.30 
TCGA-CD-5803 TCGA-CD-5813 TCGA-CD-8524 TCGA-CD-8525 TCGA-CD-8526 TCGA-CD-8528 
        0.07         0.39         0.07         0.07         0.07         0.10 
TCGA-CD-8529 TCGA-CD-8530 TCGA-CD-8531 TCGA-CD-8532 TCGA-CD-A4MI TCGA-CD-A4MJ 
        0.13         0.16         0.10         0.10         0.10         0.10 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02         7.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4477 
       19.07        12.03         8.98        18.94         7.07         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        6.94         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       70.06        12.03        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99        12.36        12.66        11.93 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
       19.13        20.55        18.84        18.54        18.61        17.85 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
       13.35        17.19        10.26        15.22        15.98        12.79 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-D7-8570 TCGA-D7-8572 TCGA-D7-8573 
       10.55        11.31        12.30         7.99         0.85         3.88 
TCGA-D7-8574 TCGA-D7-8576 TCGA-D7-A4YT TCGA-D7-A4YU TCGA-D7-A4YV TCGA-D7-A4Z0 
        4.18         3.19         4.24         6.90         5.92         4.87 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 
        0.62         6.54         2.01        72.23         0.39         0.20 
TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-HJ-7597 TCGA-HU-8243 
        3.02         3.58         1.02        59.05        26.43         5.92 
TCGA-HU-8245 TCGA-HU-8604 TCGA-HU-8610 TCGA-HU-A4G2 TCGA-HU-A4GN TCGA-HU-A4GP 
       12.59        12.10         0.76        15.19        21.04         8.98 
TCGA-HU-A4GQ TCGA-HU-A4GU TCGA-HU-A4H3 TCGA-HU-A4H4 TCGA-HU-A4H5 TCGA-HU-A4H6 
        0.10         6.25        19.36        17.69        12.30         9.63 
TCGA-IN-7806 TCGA-IN-7808 TCGA-IN-8462 TCGA-IN-8663 TCGA-IP-7968 
        6.87         3.55        10.49         3.39         2.53 

  HRCT1 MUTATED HRCT1 WILD-TYPE 
           0.13            0.07 
  HRCT1 MUTATED HRCT1 WILD-TYPE 
          14.10           72.23 
  HRCT1 MUTATED HRCT1 WILD-TYPE 
           0.69            3.02 
[1] "0.1 - 14.1 (0.7)" "0.1 - 72.2 (3.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-4201      TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-6452      TCGA-BR-6455      TCGA-BR-6457      TCGA-BR-6458 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6801 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7707      TCGA-BR-7715 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-8059 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-8077      TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284 
  "HRCT1 MUTATED" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8360      TCGA-BR-8361 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8484 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE"   "HRCT1 MUTATED" "HRCT1 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588      TCGA-BR-8589 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8676      TCGA-BR-8677 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A4IV 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J4 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4QI 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8528 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300 
  "HRCT1 MUTATED" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8576      TCGA-D7-A4YT 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4Z0      TCGA-EQ-5647 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-FP-7735 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-FP-8209      TCGA-HJ-7597      TCGA-HU-8243      TCGA-HU-8245 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4GD 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE"   "HRCT1 MUTATED" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ      TCGA-HU-A4GU 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-IP-7968 
"HRCT1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-4201      TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-6452      TCGA-BR-6455      TCGA-BR-6457      TCGA-BR-6458 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6801 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7707      TCGA-BR-7715 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-8059 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-8077      TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284 
  "HRCT1 MUTATED" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8360      TCGA-BR-8361 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8484 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE"   "HRCT1 MUTATED" "HRCT1 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588      TCGA-BR-8589 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8676      TCGA-BR-8677 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A4IV 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J4 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4QI 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8528 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300 
  "HRCT1 MUTATED" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8576      TCGA-D7-A4YT 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4Z0      TCGA-EQ-5647 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-FP-7735 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-FP-8209      TCGA-HJ-7597      TCGA-HU-8243      TCGA-HU-8245 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4GD 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE"   "HRCT1 MUTATED" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ      TCGA-HU-A4GU 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-IP-7968 
"HRCT1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-4201      TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-6452      TCGA-BR-6455      TCGA-BR-6457      TCGA-BR-6458 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6801 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7707      TCGA-BR-7715 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-8059 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-8077      TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284 
  "HRCT1 MUTATED" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8360      TCGA-BR-8361 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8484 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE"   "HRCT1 MUTATED" "HRCT1 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588      TCGA-BR-8589 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8676      TCGA-BR-8677 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A4IV 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J4 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4QI 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8528 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300 
  "HRCT1 MUTATED" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8576      TCGA-D7-A4YT 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4Z0      TCGA-EQ-5647 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-FP-7735 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-FP-8209      TCGA-HJ-7597      TCGA-HU-8243      TCGA-HU-8245 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4GD 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE"   "HRCT1 MUTATED" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ      TCGA-HU-A4GU 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" "HRCT1 WILD-TYPE" 
     TCGA-IP-7968 
"HRCT1 WILD-TYPE" 
[1] "hr="     "9200000"
D25V2, continuous
                 vv
clus              STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  HRCT1 MUTATED         0        0        0        0         0         1
  HRCT1 WILD-TYPE       1        7       22       24        21        27
                 vv
clus              STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  HRCT1 MUTATED           0          1          0          2        0
  HRCT1 WILD-TYPE         3         33         23         16       24
D25V3, multiclass
                 vv
clus              T1 T2 T3 T4
  HRCT1 MUTATED    0  0  2  2
  HRCT1 WILD-TYPE  7 65 87 47
D25V4, multiclass
    clus
vv   HRCT1 MUTATED HRCT1 WILD-TYPE
  T1             0               7
  T2             0              65
  T3             2              87
  T4             2              47
                 vv
clus              N0 N1 N2 N3
  HRCT1 MUTATED    0  3  1  0
  HRCT1 WILD-TYPE 70 62 34 38
D25V5, multiclass
    clus
vv   HRCT1 MUTATED HRCT1 WILD-TYPE
  N0             0              70
  N1             3              62
  N2             1              34
  N3             0              38
                 vv
clus               M0  M1  MX
  HRCT1 MUTATED     4   0   0
  HRCT1 WILD-TYPE 190  16   9
D25V6, multiclass
    clus
vv   HRCT1 MUTATED HRCT1 WILD-TYPE
  M0             4             190
  M1             0              16
  MX             0               9
D25V7, binary
                 cls
clus                0   1
  HRCT1 MUTATED     1   3
  HRCT1 WILD-TYPE  86 129
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HRCT1 MUTATED      1    3
  HRCT1 WILD-TYPE   86  129
        clus
vv       HRCT1 MUTATED HRCT1 WILD-TYPE
  FEMALE             1              86
  MALE               3             129
                 vv
clus              STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  HRCT1 MUTATED                                       0
  HRCT1 WILD-TYPE                                    31
                 vv
clus              STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  HRCT1 MUTATED                                                        2
  HRCT1 WILD-TYPE                                                    106
                 vv
clus              STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  HRCT1 MUTATED                                                                   1
  HRCT1 WILD-TYPE                                                                33
                 vv
clus              STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  HRCT1 MUTATED                                                  1
  HRCT1 WILD-TYPE                                               25
                 vv
clus              STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  HRCT1 MUTATED                                                          0
  HRCT1 WILD-TYPE                                                       13
                 vv
clus              STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  HRCT1 MUTATED                                                           0
  HRCT1 WILD-TYPE                                                         5
                 vv
clus              STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  HRCT1 MUTATED                                          0
  HRCT1 WILD-TYPE                                        1
D25V8, multiclass
D25V9, binary
                 cls
clus                0   1
  HRCT1 MUTATED     0   4
  HRCT1 WILD-TYPE   6 209
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HRCT1 MUTATED      0    4
  HRCT1 WILD-TYPE    6  209
     clus
vv    HRCT1 MUTATED HRCT1 WILD-TYPE
  NO              0               6
  YES             4             209
                 vv
clus               R0  R1  R2  RX
  HRCT1 MUTATED     4   0   0   0
  HRCT1 WILD-TYPE 167   6  10  23
D25V10, multiclass
    clus
vv   HRCT1 MUTATED HRCT1 WILD-TYPE
  R0             4             167
  R1             0               6
  R2             0              10
  RX             0              23
D25V11, continuous

Clustering(26) Variable = IAPP MUTATION ANALYSIS
D26V1, survival
                sevent
clus2              0   1
  IAPP MUTATED     2   1
  IAPP WILD-TYPE 157  29
  IAPP MUTATED IAPP WILD-TYPE 
             3            186 
  IAPP MUTATED IAPP WILD-TYPE 
             1             29 
$`IAPP MUTATED`
TCGA-BR-4184 TCGA-CG-4466 TCGA-D7-6522 
        6.94        18.94        18.61 

$`IAPP WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4201 TCGA-BR-4267 TCGA-BR-4279 
        5.62         0.10         6.61        30.90         6.15         9.57 
TCGA-BR-4280 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 
        6.61         8.45        13.12        11.70         6.97        10.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        9.40         0.62        12.43        13.81         2.17        11.61 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        1.12         0.76         0.66         0.26         1.22         1.48 
TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 
        0.46         0.13         1.05         0.82         0.69         0.16 
TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-8059 TCGA-BR-8077 
        4.54         0.99         0.95         0.69         0.82         0.69 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8360 
        0.49         0.46         0.72         1.55         1.48         0.20 
TCGA-BR-8361 TCGA-BR-8365 TCGA-BR-8366 TCGA-BR-8367 TCGA-BR-8368 TCGA-BR-8370 
        0.39         2.96         0.56         1.08         1.38         0.56 
TCGA-BR-8371 TCGA-BR-8372 TCGA-BR-8373 TCGA-BR-8381 TCGA-BR-8382 TCGA-BR-8384 
        0.36         0.59         0.85         0.26         0.43         0.69 
TCGA-BR-8484 TCGA-BR-8485 TCGA-BR-8486 TCGA-BR-8588 TCGA-BR-8589 TCGA-BR-8590 
        0.69         0.30         0.99         0.76         1.91         2.14 
TCGA-BR-8591 TCGA-BR-8676 TCGA-BR-8677 TCGA-BR-8678 TCGA-BR-8679 TCGA-BR-8680 
        0.20         0.89         0.49         0.16         0.16         0.79 
TCGA-BR-8682 TCGA-BR-8683 TCGA-BR-8687 TCGA-BR-8690 TCGA-BR-A4IV TCGA-BR-A4IY 
        1.64         0.59         0.62         0.59         0.92         0.39 
TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-BR-A4J6 TCGA-BR-A4J7 TCGA-BR-A4J8 
        0.79         0.72         0.53         0.13         0.46         0.23 
TCGA-BR-A4QI TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 
        0.49         2.24         2.83         3.25        13.15        13.18 
TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CD-8524 TCGA-CD-8525 TCGA-CD-8526 
        0.30         0.07         0.39         0.07         0.07         0.07 
TCGA-CD-8528 TCGA-CD-8529 TCGA-CD-8530 TCGA-CD-8531 TCGA-CD-8532 TCGA-CD-8535 
        0.10         0.13         0.16         0.10         0.10         0.13 
TCGA-CD-A4MI TCGA-CD-A4MJ TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 
        0.10         0.10        20.02         3.02        27.02        15.95 
TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 
        1.02         7.96         8.05        54.05         4.01        14.01 
TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4465 TCGA-CG-4469 
       29.98        47.05        19.07        12.03         8.98         7.07 
TCGA-CG-4477 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         6.94         1.02         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
        0.95        70.06        12.03        28.96        31.04        65.10 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 
        4.01        55.04        21.07         7.99        12.36        12.66 
TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6524 
       11.93        19.13        20.55        18.84        18.54        17.85 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
       13.35        17.19        10.26        15.22        15.98        12.79 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-D7-8570 TCGA-D7-8572 TCGA-D7-8573 
       10.55        11.31        12.30         7.99         0.85         3.88 
TCGA-D7-8574 TCGA-D7-8576 TCGA-D7-A4YT TCGA-D7-A4YU TCGA-D7-A4YV TCGA-D7-A4Z0 
        4.18         3.19         4.24         6.90         5.92         4.87 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 
        0.62         6.54         2.01        72.23         0.39         0.20 
TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-HJ-7597 TCGA-HU-8243 
        3.02         3.58         1.02        59.05        26.43         5.92 
TCGA-HU-8245 TCGA-HU-8604 TCGA-HU-8610 TCGA-HU-A4G2 TCGA-HU-A4GD TCGA-HU-A4GN 
       12.59        12.10         0.76        15.19        14.10        21.04 
TCGA-HU-A4GP TCGA-HU-A4GQ TCGA-HU-A4GU TCGA-HU-A4H3 TCGA-HU-A4H4 TCGA-HU-A4H5 
        8.98         0.10         6.25        19.36        17.69        12.30 
TCGA-HU-A4H6 TCGA-IN-7806 TCGA-IN-7808 TCGA-IN-8462 TCGA-IN-8663 TCGA-IP-7968 
        9.63         6.87         3.55        10.49         3.39         2.53 

  IAPP MUTATED IAPP WILD-TYPE 
          6.94           0.07 
  IAPP MUTATED IAPP WILD-TYPE 
         18.94          72.23 
  IAPP MUTATED IAPP WILD-TYPE 
        18.610          2.895 
[1] "6.9 - 18.9 (18.6)" "0.1 - 72.2 (2.9)" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE"   "IAPP MUTATED" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"IAPP WILD-TYPE" "IAPP WILD-TYPE"   "IAPP MUTATED" "IAPP WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE"   "IAPP MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-IP-7968 
"IAPP WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE"   "IAPP MUTATED" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"IAPP WILD-TYPE" "IAPP WILD-TYPE"   "IAPP MUTATED" "IAPP WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE"   "IAPP MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-IP-7968 
"IAPP WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE"   "IAPP MUTATED" 
    TCGA-BR-4201     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6452     TCGA-BR-6455     TCGA-BR-6457     TCGA-BR-6458 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6801 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-8059 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8360     TCGA-BR-8361 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8484 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8676     TCGA-BR-8677 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A4IV 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J4 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4QI 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8528 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"IAPP WILD-TYPE" "IAPP WILD-TYPE"   "IAPP MUTATED" "IAPP WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE"   "IAPP MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8576     TCGA-D7-A4YT 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4Z0     TCGA-EQ-5647 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-FP-7735 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-FP-8209     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4GD 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GU 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-IP-7968 
"IAPP WILD-TYPE" 
[1] "hr=" "1.2"
D26V2, continuous
                vv
clus             STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  IAPP MUTATED         0        0        2        0         0         0
  IAPP WILD-TYPE       1        7       20       24        21        28
                vv
clus             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC STAGE IV
  IAPP MUTATED           0          1          0          0        0
  IAPP WILD-TYPE         3         33         23         18       24
D26V3, multiclass
                vv
clus             T1 T2 T3 T4
  IAPP MUTATED    0  2  1  0
  IAPP WILD-TYPE  7 63 88 49
D26V4, multiclass
    clus
vv   IAPP MUTATED IAPP WILD-TYPE
  T1            0              7
  T2            2             63
  T3            1             88
  T4            0             49
                vv
clus             N0 N1 N2 N3
  IAPP MUTATED    2  2  0  0
  IAPP WILD-TYPE 68 63 35 38
D26V5, multiclass
    clus
vv   IAPP MUTATED IAPP WILD-TYPE
  N0            2             68
  N1            2             63
  N2            0             35
  N3            0             38
                vv
clus              M0  M1  MX
  IAPP MUTATED     3   0   1
  IAPP WILD-TYPE 191  16   8
D26V6, multiclass
    clus
vv   IAPP MUTATED IAPP WILD-TYPE
  M0            3            191
  M1            0             16
  MX            1              8
D26V7, binary
                cls
clus               0   1
  IAPP MUTATED     1   3
  IAPP WILD-TYPE  86 129
[1] "tbl2"
                cls
clus             [,1] [,2]
  IAPP MUTATED      1    3
  IAPP WILD-TYPE   86  129
        clus
vv       IAPP MUTATED IAPP WILD-TYPE
  FEMALE            1             86
  MALE              3            129
                vv
clus             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  IAPP MUTATED                                       1
  IAPP WILD-TYPE                                    30
                vv
clus             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  IAPP MUTATED                                                        2
  IAPP WILD-TYPE                                                    106
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  IAPP MUTATED                                                                   1
  IAPP WILD-TYPE                                                                33
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA  TUBULAR TYPE
  IAPP MUTATED                                                  0
  IAPP WILD-TYPE                                               26
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  IAPP MUTATED                                                          0
  IAPP WILD-TYPE                                                       13
                vv
clus             STOMACH  INTESTINAL ADENOCARCINOMA \302\240PAPILLARY TYPE
  IAPP MUTATED                                                           0
  IAPP WILD-TYPE                                                         5
                vv
clus             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  IAPP MUTATED                                          0
  IAPP WILD-TYPE                                        1
D26V8, multiclass
D26V9, binary
                cls
clus               0   1
  IAPP MUTATED     0   4
  IAPP WILD-TYPE   6 209
[1] "tbl2"
                cls
clus             [,1] [,2]
  IAPP MUTATED      0    4
  IAPP WILD-TYPE    6  209
     clus
vv    IAPP MUTATED IAPP WILD-TYPE
  NO             0              6
  YES            4            209
                vv
clus              R0  R1  R2  RX
  IAPP MUTATED     2   0   0   2
  IAPP WILD-TYPE 169   6  10  21
D26V10, multiclass
    clus
vv   IAPP MUTATED IAPP WILD-TYPE
  R0            2            169
  R1            0              6
  R2            0             10
  RX            2             21
D26V11, continuous
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                 "NEOPLASM.DISEASESTAGE" 
                                      V4 
                     "PATHOLOGY.T.STAGE" 
                                      V5 
                     "PATHOLOGY.N.STAGE" 
                                      V6 
                     "PATHOLOGY.M.STAGE" 
                                      V7 
                                "GENDER" 
                                      V8 
                     "HISTOLOGICAL.TYPE" 
                                      V9 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                     V10 
             "COMPLETENESS.OF.RESECTION" 
                                     V11 
                 "NUMBER.OF.LYMPH.NODES" 
> q(save="no")
