		Molecular subtypes	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	0 (0%)	291	0.0015974	0.995	0.50725	1	0.032655	1	0.20412	1	0.12951	1	0.09281	1	0.27662	1	0.03241	1	0.14889	1	0.27541	1
1q gain	0 (0%)	263	1.7476e-06	0.00128	0.00039531	0.26	0.0022178	1	0.0029693	1	8.3085e-05	0.0567	0.00093448	0.598	0.0011189	0.709	0.02597	1	0.015212	1	0.0086545	1
2p gain	0 (0%)	281	2.1235e-05	0.0151	0.0014846	0.932	0.012008	1	0.87401	1	0.16666	1	0.11643	1	0.00063461	0.411	0.063093	1	0.00027762	0.185	0.012749	1
2q gain	0 (0%)	282	3.73e-05	0.0261	0.010787	1	0.037854	1	0.77107	1	0.037516	1	0.017171	1	0.0064804	1	0.12743	1	0.0067178	1	0.026372	1
3p gain	0 (0%)	292	1	1	0.20217	1	0.14212	1	0.014417	1	0.33621	1	0.36231	1	0.16601	1	0.82264	1	0.10944	1	0.51243	1
3q gain	0 (0%)	274	0.0081496	1	0.2707	1	1	1	0.46004	1	0.02241	1	0.023104	1	0.40023	1	0.13797	1	0.083375	1	0.1173	1
4p gain	0 (0%)	300	0.011738	1	0.28579	1	0.84441	1	1	1	0.11077	1	0.4435	1	1	1	1	1	1	1	0.78907	1
5p gain	0 (0%)	262	3.1921e-06	0.00232	0.0021789	1	0.33841	1	0.15538	1	6.2534e-05	0.043	0.00036723	0.242	0.0013416	0.845	0.012444	1	0.0021273	1	0.0025503	1
5q gain	0 (0%)	295	0.043604	1	0.95016	1	1	1	0.12963	1	0.12468	1	0.54464	1	0.28228	1	0.92129	1	0.68672	1	0.1266	1
6p gain	0 (0%)	279	1.0687e-06	0.000788	6.0244e-05	0.0416	0.92751	1	0.74285	1	0.0028552	1	0.023514	1	0.00041671	0.274	0.019047	1	0.00074772	0.482	0.0035006	1
6q gain	0 (0%)	283	1.0793e-05	0.00775	0.00035257	0.233	0.87997	1	0.86581	1	0.005881	1	0.0025296	1	0.0024414	1	0.10065	1	0.005199	1	0.014803	1
7p gain	0 (0%)	210	3.9134e-15	3.01e-12	3.8508e-05	0.0269	0.38207	1	0.35991	1	0.0089784	1	0.070368	1	0.18757	1	0.065294	1	0.0065987	1	0.0033888	1
7q gain	0 (0%)	228	9.6729e-15	7.41e-12	0.00056189	0.366	0.39795	1	0.77079	1	0.15974	1	0.33733	1	0.25476	1	0.42876	1	0.26077	1	0.05395	1
8p gain	0 (0%)	214	0.039419	1	0.00043994	0.289	0.052687	1	0.048703	1	0.050056	1	0.038598	1	0.0076225	1	0.049571	1	1.9989e-05	0.0142	0.00194	1
8q gain	0 (0%)	183	0.23131	1	2.436e-07	0.000181	0.017477	1	0.05062	1	0.00034258	0.227	0.073272	1	0.00017131	0.115	0.0036053	1	4.4645e-05	0.031	1.885e-05	0.0134
9p gain	0 (0%)	283	0.12195	1	0.13864	1	0.30902	1	0.34612	1	0.43931	1	0.30874	1	0.72898	1	0.034496	1	0.66792	1	0.05659	1
9q gain	0 (0%)	276	0.038422	1	0.11336	1	0.11735	1	0.23995	1	0.58318	1	0.25204	1	0.96974	1	0.44672	1	0.82317	1	0.15237	1
10p gain	0 (0%)	260	5.7546e-11	4.36e-08	0.002043	1	0.82201	1	0.76504	1	0.0529	1	0.013405	1	0.58495	1	0.017252	1	0.53174	1	0.0046651	1
10q gain	0 (0%)	279	6.1481e-07	0.000455	0.04812	1	0.71799	1	0.50114	1	0.47067	1	0.64017	1	0.6614	1	0.78185	1	0.57382	1	0.18255	1
11p gain	0 (0%)	293	0.78427	1	0.11493	1	0.8398	1	0.91133	1	0.53671	1	0.18322	1	0.08632	1	0.049953	1	0.52142	1	0.025798	1
11q gain	0 (0%)	285	0.18565	1	0.033831	1	0.94917	1	0.52318	1	0.38193	1	0.063371	1	0.057129	1	0.030341	1	0.084887	1	0.0081822	1
12p gain	0 (0%)	270	0.0028073	1	0.17817	1	0.12372	1	0.32705	1	0.061551	1	0.15207	1	0.0035235	1	0.45327	1	0.0019173	1	0.022	1
12q gain	0 (0%)	277	0.11032	1	0.16802	1	0.33577	1	0.24317	1	0.81944	1	0.63507	1	0.33412	1	0.26008	1	0.016371	1	0.04528	1
13q gain	0 (0%)	240	1.3012e-07	9.69e-05	0.00032492	0.216	0.26617	1	0.37726	1	0.010823	1	0.38551	1	0.0038464	1	0.033107	1	0.001804	1	0.028064	1
14q gain	0 (0%)	300	0.053606	1	0.28345	1	0.035918	1	0.53229	1	NA	NA	NA	NA	0.27956	1	0.61179	1	0.43048	1	0.33981	1
15q gain	0 (0%)	295	0.0073595	1	0.54299	1	0.036351	1	0.82356	1	0.072315	1	0.0069946	1	0.72385	1	0.15319	1	0.33622	1	0.061332	1
16p gain	0 (0%)	292	0.045273	1	0.11581	1	0.7818	1	0.91588	1	0.040723	1	0.81431	1	0.72597	1	0.096398	1	0.11289	1	0.67423	1
16q gain	0 (0%)	293	0.018697	1	0.82574	1	0.56919	1	0.27762	1	0.1704	1	0.58077	1	0.75673	1	0.12142	1	0.57189	1	1	1
17p gain	0 (0%)	298	0.011019	1	0.4568	1	0.62594	1	0.13498	1	0.53941	1	1	1	0.63586	1	0.88982	1	0.072648	1	0.5599	1
17q gain	0 (0%)	290	0.0090751	1	0.66423	1	0.59831	1	0.33329	1	0.17161	1	0.6742	1	1	1	0.43881	1	0.13463	1	0.25314	1
18p gain	0 (0%)	280	0.00028395	0.189	3.8703e-05	0.027	0.085511	1	0.24113	1	0.13519	1	0.25723	1	0.54768	1	0.11213	1	0.66792	1	0.088983	1
18q gain	0 (0%)	291	0.049607	1	0.061522	1	0.22105	1	0.09426	1	0.31579	1	0.18883	1	0.11183	1	0.11605	1	0.039716	1	0.47791	1
19p gain	0 (0%)	292	0.63579	1	0.021917	1	0.68549	1	0.21706	1	0.85699	1	0.3991	1	0.49342	1	0.9348	1	0.49459	1	0.55201	1
19q gain	0 (0%)	273	0.087528	1	0.38188	1	0.48682	1	0.2684	1	0.24463	1	0.062433	1	0.13919	1	0.21831	1	0.24921	1	0.43129	1
20p gain	0 (0%)	177	7.5929e-18	5.85e-15	5.6606e-09	4.25e-06	0.012643	1	0.11491	1	7.1875e-07	0.000531	2.4056e-06	0.00176	2.1617e-05	0.0153	5.8597e-07	0.000434	0.0011235	0.711	3.9889e-06	0.00289
20q gain	0 (0%)	148	3.084e-26	2.38e-23	7.3442e-14	5.61e-11	0.0034722	1	0.25244	1	1.8282e-10	1.38e-07	7.2319e-10	5.45e-07	3.0267e-07	0.000225	5.7913e-12	4.4e-09	0.0028197	1	1.5055e-10	1.14e-07
21q gain	0 (0%)	302	0.10533	1	0.86031	1	0.52876	1	0.41083	1	NA	NA	NA	NA	0.11183	1	0.34295	1	0.31087	1	0.1946	1
22q gain	0 (0%)	299	0.020826	1	0.18133	1	0.86582	1	0.13498	1	0.74079	1	0.34975	1	0.25317	1	0.24379	1	0.18487	1	0.30835	1
Xq gain	0 (0%)	300	0.36146	1	0.22265	1	0.55225	1	1	1	0.13517	1	0.26491	1	0.13406	1	0.0096918	1	0.81603	1	0.019273	1
1p loss	0 (0%)	291	8.3208e-06	0.00598	0.094458	1	0.15137	1	0.49956	1	0.40831	1	0.15768	1	0.83505	1	0.65233	1	0.22523	1	0.794	1
1q loss	0 (0%)	302	0.73986	1	0.86031	1	NA	NA	NA	NA	0.72446	1	0.19571	1	0.51571	1	0.25984	1	0.19439	1	0.43569	1
2p loss	0 (0%)	299	0.0048619	1	0.40025	1	0.067032	1	0.42215	1	0.10775	1	0.027312	1	0.385	1	0.047099	1	0.50806	1	0.71207	1
2q loss	0 (0%)	300	0.011738	1	0.68008	1	0.74521	1	0.72791	1	0.27896	1	0.073715	1	0.63115	1	0.079147	1	0.81603	1	0.33981	1
3p loss	0 (0%)	281	1.3131e-06	0.000966	0.0015207	0.95	0.18159	1	0.50789	1	0.00056779	0.369	0.02345	1	0.0015524	0.969	0.11241	1	0.034643	1	0.021131	1
3q loss	0 (0%)	291	7.6105e-05	0.0521	0.019716	1	0.61278	1	0.92652	1	0.00045924	0.3	0.096477	1	0.00074728	0.482	0.2838	1	0.0097805	1	0.26474	1
4p loss	0 (0%)	250	2.3073e-11	1.75e-08	0.0003895	0.257	0.2494	1	0.19907	1	8.5148e-05	0.0579	6.5633e-05	0.045	0.0046212	1	9.1599e-05	0.0622	0.0059698	1	0.0009219	0.591
4q loss	0 (0%)	254	2.2751e-14	1.74e-11	4.2631e-05	0.0297	0.036482	1	0.19723	1	0.00024177	0.162	0.00022643	0.152	0.0014225	0.895	6.4017e-05	0.044	0.0049632	1	0.0029015	1
5p loss	0 (0%)	288	1.7413e-06	0.00128	0.0039198	1	0.53409	1	0.41377	1	0.0037514	1	0.00032892	0.218	0.16367	1	0.042111	1	0.12995	1	0.0153	1
5q loss	0 (0%)	270	2.2051e-13	1.68e-10	2.4707e-06	0.0018	0.67114	1	0.81767	1	4.1232e-06	0.00299	5.9432e-06	0.00429	0.0060661	1	0.00027343	0.183	0.011685	1	8.439e-05	0.0575
6p loss	0 (0%)	291	0.0083741	1	0.29028	1	0.26889	1	0.12558	1	0.16513	1	0.45381	1	0.83505	1	0.3445	1	0.49352	1	0.52676	1
6q loss	0 (0%)	287	0.0028323	1	0.1069	1	0.1077	1	0.065266	1	0.029919	1	0.20273	1	0.51133	1	0.711	1	1	1	0.88495	1
7p loss	0 (0%)	301	0.02732	1	NA	NA	0.21729	1	0.10589	1	0.10912	1	0.4435	1	0.55689	1	0.28708	1	NA	NA	NA	NA
7q loss	0 (0%)	292	2.1246e-05	0.0151	0.04136	1	0.30719	1	0.47885	1	0.015593	1	0.26479	1	0.017679	1	0.1027	1	0.017779	1	0.21047	1
8p loss	0 (0%)	275	2.6789e-06	0.00195	0.032054	1	0.75781	1	0.064448	1	0.012231	1	0.02091	1	0.00032284	0.215	0.021538	1	9.7262e-05	0.0658	0.3289	1
8q loss	0 (0%)	297	0.0051281	1	0.26782	1	1	1	0.49655	1	0.61039	1	0.89005	1	0.14424	1	0.05826	1	0.18487	1	0.75034	1
9p loss	0 (0%)	254	1.6405e-13	1.25e-10	2.6425e-05	0.0186	0.014981	1	0.52868	1	0.00017139	0.115	0.0014962	0.938	0.05007	1	0.020474	1	0.51519	1	0.037263	1
9q loss	0 (0%)	280	8.9015e-08	6.64e-05	0.0041454	1	0.26465	1	0.063422	1	0.069529	1	0.042006	1	0.24655	1	0.62106	1	0.71209	1	0.12249	1
10p loss	0 (0%)	289	0.00050627	0.33	0.0080781	1	0.12267	1	0.25414	1	0.031686	1	0.023664	1	0.020019	1	0.016911	1	0.18322	1	0.011007	1
10q loss	0 (0%)	289	1.6315e-05	0.0116	0.0030674	1	0.54733	1	0.55341	1	0.01199	1	0.053614	1	0.0037362	1	0.063922	1	0.25982	1	0.012895	1
11p loss	0 (0%)	286	3.1268e-05	0.0219	5.3926e-05	0.0374	0.0067122	1	0.44256	1	0.20759	1	0.022607	1	0.16123	1	0.14885	1	0.0071403	1	0.31755	1
11q loss	0 (0%)	289	3.3583e-05	0.0235	0.0089166	1	0.39924	1	0.81087	1	0.42232	1	0.22498	1	0.35762	1	0.57941	1	0.012674	1	0.52676	1
12p loss	0 (0%)	284	2.2973e-05	0.0162	0.00044736	0.293	0.032385	1	0.24188	1	0.00016269	0.109	0.00012688	0.0858	0.023311	1	0.016081	1	0.14111	1	0.0020456	1
12q loss	0 (0%)	293	0.0014953	0.938	0.0067934	1	0.073421	1	0.83947	1	0.043239	1	0.22498	1	1	1	0.15416	1	0.9104	1	0.014658	1
13q loss	0 (0%)	294	0.00047838	0.312	0.10603	1	0.61851	1	0.63783	1	0.51868	1	0.22498	1	0.21314	1	0.79372	1	0.45971	1	0.89709	1
14q loss	0 (0%)	277	7.8457e-08	5.86e-05	0.00090484	0.581	0.52568	1	0.67199	1	0.0012451	0.786	0.003645	1	0.034152	1	0.048286	1	0.56674	1	0.020862	1
15q loss	0 (0%)	280	3.0756e-08	2.3e-05	2.3446e-05	0.0165	0.010242	1	0.031711	1	0.0064126	1	0.0011717	0.741	0.0018286	1	0.00071161	0.46	0.049582	1	0.003597	1
16p loss	0 (0%)	276	5.3723e-13	4.08e-10	1.8928e-05	0.0135	0.33577	1	0.18082	1	2.3909e-06	0.00175	5.4255e-06	0.00392	1.3122e-05	0.00937	0.0094907	1	5.4257e-05	0.0376	0.014828	1
16q loss	0 (0%)	273	4.2924e-10	3.24e-07	3.5133e-06	0.00255	0.11856	1	0.0064673	1	5.9202e-05	0.0409	6.1479e-05	0.0424	0.00097821	0.624	0.086345	1	0.003517	1	0.17668	1
17p loss	0 (0%)	241	6.4306e-15	4.93e-12	8.7194e-07	0.000643	0.67129	1	0.89669	1	0.0001413	0.0954	0.0010319	0.656	0.0087206	1	0.00064514	0.417	0.0017383	1	0.0029874	1
17q loss	0 (0%)	286	8.0441e-05	0.0549	0.02449	1	0.77173	1	0.53009	1	0.017459	1	0.012162	1	0.045506	1	0.0045077	1	0.11106	1	0.15622	1
18p loss	0 (0%)	265	0.00083712	0.538	0.01295	1	0.24361	1	0.84986	1	0.025998	1	0.0049877	1	0.052774	1	0.11316	1	0.0027673	1	0.14439	1
18q loss	0 (0%)	253	2.5384e-05	0.0178	0.020551	1	0.036482	1	0.093911	1	0.0025537	1	9.5526e-05	0.0648	0.024357	1	0.025698	1	0.030621	1	0.042172	1
19p loss	0 (0%)	272	2.5112e-13	1.91e-10	4.4043e-06	0.00318	0.026206	1	0.30538	1	3.1461e-09	2.37e-06	1.2426e-05	0.00891	0.020219	1	1.6164e-06	0.00119	0.011583	1	7.3299e-05	0.0502
19q loss	0 (0%)	282	1.3287e-08	9.97e-06	1.2575e-05	0.00899	0.055503	1	0.43611	1	4.2154e-07	0.000313	0.0046712	1	0.064919	1	1.2455e-05	0.00892	0.092277	1	0.00057398	0.373
20p loss	0 (0%)	296	0.00014474	0.0976	0.017003	1	0.68987	1	0.07403	1	0.00099254	0.632	0.17338	1	0.43789	1	0.51239	1	0.17035	1	0.41498	1
21q loss	0 (0%)	244	1.9638e-08	1.47e-05	6.8338e-06	0.00492	0.31111	1	0.74005	1	0.10937	1	0.00096646	0.618	0.031856	1	0.68135	1	0.12648	1	0.40356	1
22q loss	0 (0%)	265	6.6292e-16	5.1e-13	1.899e-06	0.00139	2.3438e-05	0.0165	0.15971	1	5.8716e-05	0.0406	0.0062535	1	0.0016322	1	0.0010507	0.667	0.010952	1	0.0053212	1
Xq loss	0 (0%)	290	0.0039132	1	0.070066	1	0.61551	1	0.3893	1	0.27384	1	0.11612	1	0.0073132	1	0.26858	1	0.006718	1	0.33074	1
