
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering_new/THCA-TP/4474541/THCA-TP.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/THCA-TP/4435034/THCA-TP.clin.merged.picked.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=.05", "-cQ=0.25", "-MF=ALL", "-oT=THCA-TP", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=THCA-TP"
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/THCA-TP/4435034/THCA-TP.clin.merged.picked.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering_new/THCA-TP/4474541/THCA-TP.mergedcluster.txt"

nPatients in clinical file=477, in cluster file=496, common to both=477
[1]  10 477
[1] "CN_CNMF"
[1] 3
  1   2   3 
 30 371  74 
  1   2   3 
 30 371  74 
[1] "METHLYATION_CNMF"
[1] 3
  1   2   3 
145  79 253 
  1   2   3 
145  79 253 
[1] "RPPA_CNMF"
[1] 3
 1  2  3 
60 76 75 
 1  2  3 
60 76 75 
[1] "RPPA_CHIERARCHICAL"
[1] 3
 1  2  3 
30 89 92 
 1  2  3 
30 89 92 
[1] "MRNASEQ_CNMF"
[1] 3
  1   2   3   4 
144  52 111 156 
  1   2   3   4 
144  52 111 156 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
  1   2   3   4 
127 205  90  41 
  1   2   3   4 
127 205  90  41 
[1] "MIRSEQ_CNMF"
[1] 3
  1   2   3 
144 169 163 
  1   2   3 
144 169 163 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
151 125 200 
  1   2   3 
151 125 200 
[1] "MIRSEQ_MATURE_CNMF"
[1] 3
  1   2   3 
157 165 154 
  1   2   3 
157 165 154 
[1] "MIRSEQ_MATURE_CHIERARCHICAL"
[1] 3
  1   2   3 
189 123 164 
  1   2   3 
189 123 164 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "RADIATIONTHERAPY"                      
[14] "HISTOLOGICALTYPE"                      
[15] "RADIATIONS.RADIATION.REGIMENINDICATION"
[16] "RADIATIONEXPOSURE"                     
[17] "EXTRATHYROIDAL.EXTENSION"              
[18] "COMPLETENESS.OF.RESECTION"             
[19] "NUMBER.OF.LYMPH.NODES"                 
[20] "MULTIFOCALITY"                         
[21] "TUMOR.SIZE"                            
[22] "BATCHNUMBER"                           

Input Data has 22 rows and 477 columns.

[1] "Batch" "22"   
[1] "Last Follow UP"
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0Z3 TCGA-BJ-A0Z5 TCGA-BJ-A0Z9 
         754          419          554          497          448          251 
TCGA-BJ-A0ZA TCGA-BJ-A0ZB TCGA-BJ-A0ZC TCGA-BJ-A0ZE TCGA-BJ-A0ZG TCGA-BJ-A0ZH 
         574          122          352          509          230          460 
TCGA-BJ-A0ZJ TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A191 TCGA-BJ-A192 TCGA-BJ-A28R 
         538          710          626          146          246          148 
TCGA-BJ-A28T TCGA-BJ-A28V TCGA-BJ-A28W TCGA-BJ-A28X TCGA-BJ-A28Z TCGA-BJ-A290 
          84          155           34          532           37          626 
TCGA-BJ-A291 TCGA-BJ-A2NA TCGA-BJ-A3PR TCGA-BJ-A3PT TCGA-BJ-A3PU TCGA-BJ-A45C 
         441           64          244          367          305          174 
TCGA-BJ-A45D TCGA-BJ-A45E TCGA-BJ-A45F TCGA-BJ-A45G TCGA-BJ-A45H TCGA-BJ-A45I 
         197            1          105          193          237          187 
TCGA-BJ-A45J TCGA-BJ-A45K TCGA-BJ-A4O8 TCGA-BJ-A4O9 TCGA-CE-A13K TCGA-CE-A27D 
         154          273          150          181           16            3 
TCGA-CE-A3MD TCGA-CE-A3ME TCGA-CE-A481 TCGA-CE-A482 TCGA-CE-A483 TCGA-CE-A484 
           6            7            3            2            3           12 
TCGA-CE-A485 TCGA-DE-A0XZ TCGA-DE-A0Y2 TCGA-DE-A0Y3 TCGA-DE-A2OL TCGA-DE-A3KN 
           3          615          469         1109          182          482 
TCGA-DE-A4M8 TCGA-DE-A4M9 TCGA-DE-A4MA TCGA-DE-A4MB TCGA-DE-A4MC TCGA-DE-A4MD 
         185          148          506          352          529          365 
TCGA-DJ-A13M TCGA-DJ-A13O TCGA-DJ-A13P TCGA-DJ-A13R TCGA-DJ-A13S TCGA-DJ-A13T 
         274          215         4199           92          265          758 
TCGA-DJ-A13U TCGA-DJ-A13V TCGA-DJ-A13W TCGA-DJ-A13X TCGA-DJ-A1QD TCGA-DJ-A1QE 
         393          362          454          243          334         3041 
TCGA-DJ-A1QF TCGA-DJ-A1QG TCGA-DJ-A1QH TCGA-DJ-A1QI TCGA-DJ-A1QL TCGA-DJ-A1QM 
         549          212          243          457          212           30 
TCGA-DJ-A1QN TCGA-DJ-A1QO TCGA-DJ-A1QQ TCGA-DJ-A2PN TCGA-DJ-A2PO TCGA-DJ-A2PP 
         273           31          181          306          242          152 
TCGA-DJ-A2PQ TCGA-DJ-A2PR TCGA-DJ-A2PS TCGA-DJ-A2PT TCGA-DJ-A2PU TCGA-DJ-A2PV 
         623          318           59          292          312          242 
TCGA-DJ-A2PW TCGA-DJ-A2PX TCGA-DJ-A2PY TCGA-DJ-A2PZ TCGA-DJ-A2Q0 TCGA-DJ-A2Q1 
         234          153          267          256          247          284 
TCGA-DJ-A2Q2 TCGA-DJ-A2Q3 TCGA-DJ-A2Q4 TCGA-DJ-A2Q5 TCGA-DJ-A2Q6 TCGA-DJ-A2Q7 
         206          280          287          301          262          291 
TCGA-DJ-A2Q8 TCGA-DJ-A2Q9 TCGA-DJ-A2QA TCGA-DJ-A2QB TCGA-DJ-A2QC TCGA-DJ-A3UK 
         215          315          378          330          304          251 
TCGA-DJ-A3UM TCGA-DJ-A3UN TCGA-DJ-A3UO TCGA-DJ-A3UP TCGA-DJ-A3UQ TCGA-DJ-A3UR 
         524          380          480          167          277          721 
TCGA-DJ-A3US TCGA-DJ-A3UT TCGA-DJ-A3UU TCGA-DJ-A3UW TCGA-DJ-A3UX TCGA-DJ-A3UY 
         630          469          538         1308          345          405 
TCGA-DJ-A3UZ TCGA-DJ-A3V0 TCGA-DJ-A3V2 TCGA-DJ-A3V3 TCGA-DJ-A3V4 TCGA-DJ-A3V5 
         388          761          225          540          443          239 
TCGA-DJ-A3V7 TCGA-DJ-A3V8 TCGA-DJ-A3V9 TCGA-DJ-A3VA TCGA-DJ-A3VB TCGA-DJ-A3VD 
         299          259          217          363          341          350 
TCGA-DJ-A3VE TCGA-DJ-A3VF TCGA-DJ-A3VG TCGA-DJ-A3VJ TCGA-DJ-A3VL TCGA-DJ-A3VM 
         134          235          253          528          523          481 
TCGA-DJ-A4UL TCGA-DJ-A4UQ TCGA-DJ-A4UR TCGA-DJ-A4UT TCGA-DJ-A4UW TCGA-DJ-A4V0 
         363          328          334          371          287          284 
TCGA-DJ-A4V2 TCGA-DJ-A4V4 TCGA-DJ-A4V5 TCGA-DO-A1JZ TCGA-DO-A1K0 TCGA-DO-A2HM 
          94          102          491         1670          655           70 
TCGA-E3-A3DY TCGA-E3-A3DZ TCGA-E3-A3E0 TCGA-E3-A3E1 TCGA-E3-A3E2 TCGA-E3-A3E3 
         945          367         2018         1222         1921          921 
TCGA-E3-A3E5 TCGA-E8-A242 TCGA-E8-A2EA TCGA-E8-A2JQ TCGA-E8-A3X7 TCGA-E8-A413 
         427           34          678           NA           45           10 
TCGA-E8-A414 TCGA-E8-A415 TCGA-E8-A416 TCGA-E8-A417 TCGA-E8-A418 TCGA-E8-A419 
           7            5           22            8           45           NA 
TCGA-E8-A432 TCGA-E8-A433 TCGA-E8-A434 TCGA-E8-A436 TCGA-E8-A437 TCGA-E8-A438 
          16            5            7           35          234          210 
TCGA-E8-A44K TCGA-E8-A44M TCGA-EL-A3CL TCGA-EL-A3CM TCGA-EL-A3CN TCGA-EL-A3CO 
          12           12           NA           NA         4731           NA 
TCGA-EL-A3CP TCGA-EL-A3CR TCGA-EL-A3CS TCGA-EL-A3CT TCGA-EL-A3CU TCGA-EL-A3CV 
        4831           NA           NA           NA         4780         1154 
TCGA-EL-A3CW TCGA-EL-A3CX TCGA-EL-A3CY TCGA-EL-A3CZ TCGA-EL-A3D1 TCGA-EL-A3D4 
          NA         2461          127         1788         2259         1381 
TCGA-EL-A3D5 TCGA-EL-A3D6 TCGA-EL-A3GO TCGA-EL-A3GP TCGA-EL-A3GQ TCGA-EL-A3GR 
        1017         3296         1196           43          918         3128 
TCGA-EL-A3GS TCGA-EL-A3GU TCGA-EL-A3GV TCGA-EL-A3GW TCGA-EL-A3GX TCGA-EL-A3GY 
        1989         3773         1532         1133         4494         3076 
TCGA-EL-A3H1 TCGA-EL-A3H2 TCGA-EL-A3H4 TCGA-EL-A3H5 TCGA-EL-A3H7 TCGA-EL-A3H8 
          NA           NA         1176         1604         3862         3989 
TCGA-EL-A3MW TCGA-EL-A3MY TCGA-EL-A3MZ TCGA-EL-A3N2 TCGA-EL-A3N3 TCGA-EL-A3T0 
        3305           NA           NA          370         4484         3976 
TCGA-EL-A3T1 TCGA-EL-A3T2 TCGA-EL-A3T3 TCGA-EL-A3T6 TCGA-EL-A3T7 TCGA-EL-A3T8 
        3941          988         3556         2987         1256         2901 
TCGA-EL-A3T9 TCGA-EL-A3TA TCGA-EL-A3TB TCGA-EL-A3ZG TCGA-EL-A3ZH TCGA-EL-A3ZK 
          NA         2035         2519         2352         2402          957 
TCGA-EL-A3ZL TCGA-EL-A3ZP TCGA-EL-A3ZQ TCGA-EL-A3ZR TCGA-EL-A3ZS TCGA-EL-A3ZT 
        1530         1597         1385         1465          214         1357 
TCGA-EL-A4JV TCGA-EL-A4JW TCGA-EL-A4JX TCGA-EL-A4JZ TCGA-EL-A4K0 TCGA-EL-A4K1 
        1393          586         1398         1154          578          596 
TCGA-EL-A4K2 TCGA-EL-A4K4 TCGA-EL-A4K6 TCGA-EL-A4K7 TCGA-EL-A4K9 TCGA-EL-A4KD 
         594         1022          874         1251         1149          911 
TCGA-EL-A4KG TCGA-EL-A4KH TCGA-EL-A4KI TCGA-EM-A1CS TCGA-EM-A1CT TCGA-EM-A1CU 
         405          361          264          817          553          636 
TCGA-EM-A1CV TCGA-EM-A1CW TCGA-EM-A1YA TCGA-EM-A1YB TCGA-EM-A1YC TCGA-EM-A1YD 
         376          549          602          592         1649         1734 
TCGA-EM-A1YE TCGA-EM-A22I TCGA-EM-A22J TCGA-EM-A22K TCGA-EM-A22L TCGA-EM-A22M 
        1645          447          440          478          318          441 
TCGA-EM-A22N TCGA-EM-A22O TCGA-EM-A22P TCGA-EM-A22Q TCGA-EM-A2CJ TCGA-EM-A2CK 
         324          357          339          432          500          543 
TCGA-EM-A2CL TCGA-EM-A2CN TCGA-EM-A2CO TCGA-EM-A2CP TCGA-EM-A2CQ TCGA-EM-A2CR 
         401          715          183           90          374          415 
TCGA-EM-A2CS TCGA-EM-A2CT TCGA-EM-A2CU TCGA-EM-A2OV TCGA-EM-A2OW TCGA-EM-A2OX 
         461          319          399          674          421          600 
TCGA-EM-A2OY TCGA-EM-A2OZ TCGA-EM-A2P0 TCGA-EM-A2P1 TCGA-EM-A2P2 TCGA-EM-A2P3 
         535          367          535          531          526          444 
TCGA-EM-A3AI TCGA-EM-A3AJ TCGA-EM-A3AK TCGA-EM-A3AL TCGA-EM-A3AN TCGA-EM-A3AO 
         531          576          477          430          597          407 
TCGA-EM-A3AP TCGA-EM-A3AQ TCGA-EM-A3AR TCGA-EM-A3FJ TCGA-EM-A3FK TCGA-EM-A3FL 
         254          500          510          850          723          510 
TCGA-EM-A3FM TCGA-EM-A3FN TCGA-EM-A3FO TCGA-EM-A3FP TCGA-EM-A3FQ TCGA-EM-A3FR 
         639          367          532          529          492          457 
TCGA-EM-A3O3 TCGA-EM-A3O6 TCGA-EM-A3O7 TCGA-EM-A3O8 TCGA-EM-A3O9 TCGA-EM-A3OA 
         441          339          223          381          281          423 
TCGA-EM-A3OB TCGA-EM-A3ST TCGA-EM-A3SU TCGA-EM-A3SX TCGA-EM-A3SY TCGA-EM-A3SZ 
         238          350          499          475          411          389 
TCGA-EM-A4FF TCGA-EM-A4FH TCGA-EM-A4FK TCGA-EM-A4FM TCGA-EM-A4FN TCGA-EM-A4FO 
        2148          514          273          146          261          254 
TCGA-EM-A4FQ TCGA-EM-A4FR TCGA-EM-A4FU TCGA-EM-A4FV TCGA-EM-A4G1 TCGA-ET-A25G 
         298          153         1152          387           29         1444 
TCGA-ET-A25I TCGA-ET-A25J TCGA-ET-A25K TCGA-ET-A25L TCGA-ET-A25M TCGA-ET-A25N 
        1466          903          984          450          375          450 
TCGA-ET-A25O TCGA-ET-A25P TCGA-ET-A25R TCGA-ET-A2MX TCGA-ET-A2MY TCGA-ET-A2MZ 
         824          558          621         1643          672          373 
TCGA-ET-A2N0 TCGA-ET-A2N1 TCGA-ET-A2N3 TCGA-ET-A2N4 TCGA-ET-A2N5 TCGA-ET-A39I 
         489          888          601           81         1771          418 
TCGA-ET-A39J TCGA-ET-A39K TCGA-ET-A39L TCGA-ET-A39M TCGA-ET-A39N TCGA-ET-A39O 
        2160         2205         1987         2582         2998         1856 
TCGA-ET-A39P TCGA-ET-A39R TCGA-ET-A39S TCGA-ET-A39T TCGA-ET-A3BN TCGA-ET-A3BO 
        1786         1737         1676         1799          859          177 
TCGA-ET-A3BP TCGA-ET-A3BQ TCGA-ET-A3BS TCGA-ET-A3BT TCGA-ET-A3BU TCGA-ET-A3BV 
         127           74          168          752         1165         1284 
TCGA-ET-A3BW TCGA-ET-A3BX TCGA-ET-A3DO TCGA-ET-A3DP TCGA-ET-A3DQ TCGA-ET-A3DR 
          72          137         2458         1730         1821         1323 
TCGA-ET-A3DS TCGA-ET-A3DT TCGA-ET-A3DU TCGA-ET-A3DV TCGA-ET-A3DW TCGA-ET-A40P 
           9          547          770         4026          751           98 
TCGA-ET-A40Q TCGA-ET-A40R TCGA-ET-A40S TCGA-ET-A40T TCGA-ET-A4KN TCGA-ET-A4KQ 
         218          146          152           64          122           59 
TCGA-FE-A22Z TCGA-FE-A230 TCGA-FE-A231 TCGA-FE-A232 TCGA-FE-A233 TCGA-FE-A234 
        1799         1816          961         1346          751         2075 
TCGA-FE-A235 TCGA-FE-A236 TCGA-FE-A237 TCGA-FE-A238 TCGA-FE-A239 TCGA-FE-A23A 
        3130         2031         2474         1215           NA         2489 
TCGA-FE-A3PA TCGA-FE-A3PB TCGA-FE-A3PC TCGA-FE-A3PD TCGA-FK-A3S3 TCGA-FK-A3SB 
        2872         2589         2605         2396         1401          124 
TCGA-FK-A3SD TCGA-FK-A3SE TCGA-FK-A3SG TCGA-FK-A3SH TCGA-FK-A4UB TCGA-FY-A2QD 
          27          669           28         1463         2772           38 
TCGA-FY-A3BL TCGA-FY-A3I4 TCGA-FY-A3I5 TCGA-FY-A3NM TCGA-FY-A3NN TCGA-FY-A3NP 
          35           34           50           30           NA          491 
TCGA-FY-A3ON TCGA-FY-A3R6 TCGA-FY-A3R7 TCGA-FY-A3R8 TCGA-FY-A3R9 TCGA-FY-A3RA 
          46           23            1          141          504          550 
TCGA-FY-A3TY TCGA-FY-A3W9 TCGA-FY-A3WA TCGA-FY-A3YR TCGA-FY-A40K TCGA-FY-A40L 
          NA           23           29          208          126          199 
TCGA-FY-A40M TCGA-FY-A40N TCGA-FY-A4B0 TCGA-FY-A4B3 TCGA-FY-A4B4 TCGA-GE-A2C6 
         138           27           NA           41           35          381 
TCGA-H2-A26U TCGA-H2-A2K9 TCGA-H2-A3RH TCGA-H2-A3RI TCGA-H2-A421 TCGA-H2-A422 
         334          344          379           90           67           88 
TCGA-IM-A3EB TCGA-IM-A3ED TCGA-IM-A3U2 TCGA-IM-A3U3 TCGA-IM-A41Y TCGA-IM-A41Z 
        1488         1442          312          513          298          293 
TCGA-IM-A420 TCGA-IM-A4EB TCGA-J8-A3NZ TCGA-J8-A3O0 TCGA-J8-A3O1 TCGA-J8-A3O2 
          90          263           68         1313          827           41 
TCGA-J8-A3YD TCGA-J8-A3YE TCGA-J8-A3YF TCGA-J8-A3YG TCGA-J8-A3YH TCGA-J8-A42S 
         968          846          751          678          174           75 
TCGA-J8-A4HW TCGA-J8-A4HY TCGA-KS-A41F TCGA-KS-A41I TCGA-KS-A41J TCGA-KS-A41L 
          79            6         3680          485          477         2637 
TCGA-KS-A4I1 TCGA-KS-A4I3 TCGA-KS-A4I5 TCGA-KS-A4I7 TCGA-KS-A4I9 TCGA-KS-A4IB 
         182          366          204          376          530         1963 
TCGA-KS-A4IC TCGA-KS-A4ID TCGA-L6-A4EP TCGA-L6-A4EQ TCGA-L6-A4ET TCGA-L6-A4EU 
         447          623           18          361           34           22 
TCGA-MK-A4N6 TCGA-MK-A4N7 TCGA-MK-A4N9 
         505          440          265 
Variable 1:'AGE':	nDistinctValues=73,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=13,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=371,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=18,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 14:'HISTOLOGICAL.TYPE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RADIATIONEXPOSURE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'EXTRATHYROIDAL.EXTENSION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 18:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 19:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=32,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'MULTIFOCALITY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 21:'TUMOR.SIZE':	nDistinctValues=70,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 22:'BATCH.NUMBER':	nDistinctValues=17,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "NEOPLASM.DISEASESTAGE"                 
 [3] "PATHOLOGY.T.STAGE"                     
 [4] "PATHOLOGY.N.STAGE"                     
 [5] "PATHOLOGY.M.STAGE"                     
 [6] "GENDER"                                
 [7] "HISTOLOGICAL.TYPE"                     
 [8] "RADIATIONS.RADIATION.REGIMENINDICATION"
 [9] "RADIATIONEXPOSURE"                     
[10] "EXTRATHYROIDAL.EXTENSION"              
[11] "COMPLETENESS.OF.RESECTION"             
[12] "NUMBER.OF.LYMPH.NODES"                 
[13] "MULTIFOCALITY"                         
[14] "TUMOR.SIZE"                            
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 477 columns, 1 survival variables, and 14 non-survival variables.
AGE, nv=73, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=6, binary=FALSE, numeric=FALSE
PATHOLOGY.T.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
138 160 158  19 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
138 160 158  19 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
 T1  T2  T3  T4 
138 160 158  19 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
138 160 158  19 
PATHOLOGY.N.STAGE, nv=2, binary=FALSE, numeric=TRUE
PATHOLOGY.M.STAGE, nv=3, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=4, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
RADIATIONEXPOSURE, nv=2, binary=FALSE, numeric=FALSE
EXTRATHYROIDAL.EXTENSION, nv=4, binary=FALSE, numeric=FALSE
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE
NUMBER.OF.LYMPH.NODES, nv=32, binary=FALSE, numeric=TRUE
MULTIFOCALITY, nv=2, binary=FALSE, numeric=FALSE
TUMOR.SIZE, nv=70, binary=FALSE, numeric=TRUE

Clustering(1) Variable = CN_CNMF
D1V1, survival
          sevent
clus2        0   1
  subtype1  27   2
  subtype2 357  10
  subtype3  73   1
subtype1 subtype2 subtype3 
      29      367       74 
subtype1 subtype2 subtype3 
       2       10        1 
$subtype1
TCGA-BJ-A0YZ TCGA-BJ-A190 TCGA-BJ-A192 TCGA-BJ-A290 TCGA-BJ-A45E TCGA-DE-A4MB 
       24.79        20.58         8.09        20.58         0.03        11.57 
TCGA-DJ-A2PV TCGA-DJ-A2Q0 TCGA-E8-A432 TCGA-EL-A3GP TCGA-EL-A3T9 TCGA-EL-A4KI 
        7.96         8.12         0.53         1.41         5.72         8.68 
TCGA-EM-A1YC TCGA-EM-A1YD TCGA-EM-A1YE TCGA-EM-A22N TCGA-EM-A2CO TCGA-EM-A2OY 
       54.21        57.01        54.08        10.65         6.02        17.59 
TCGA-EM-A3AI TCGA-EM-A3O3 TCGA-EM-A3O9 TCGA-EM-A3SY TCGA-ET-A2MZ TCGA-ET-A39M 
       17.46        14.50         9.24        13.51        12.26        84.89 
TCGA-ET-A39N TCGA-FE-A231 TCGA-FE-A239 TCGA-FY-A3I5 TCGA-FY-A3NM 
       98.56        31.59        33.63         1.64         0.99 

$subtype2
TCGA-BJ-A0Z0 TCGA-BJ-A0Z3 TCGA-BJ-A0Z9 TCGA-BJ-A0ZA TCGA-BJ-A0ZB TCGA-BJ-A0ZC 
       13.78        16.34         8.25        18.87         4.01        11.57 
TCGA-BJ-A0ZE TCGA-BJ-A0ZG TCGA-BJ-A0ZJ TCGA-BJ-A191 TCGA-BJ-A28R TCGA-BJ-A28T 
       16.73         7.56        17.69         4.80         4.87         2.76 
TCGA-BJ-A28V TCGA-BJ-A28W TCGA-BJ-A28X TCGA-BJ-A28Z TCGA-BJ-A291 TCGA-BJ-A2NA 
        5.10         1.12        17.49         1.22        14.50         2.10 
TCGA-BJ-A3PR TCGA-BJ-A3PU TCGA-BJ-A45C TCGA-BJ-A45G TCGA-BJ-A45H TCGA-BJ-A45I 
        8.02        10.03         5.72         6.35         7.79         6.15 
TCGA-BJ-A45J TCGA-BJ-A45K TCGA-BJ-A4O8 TCGA-BJ-A4O9 TCGA-CE-A13K TCGA-CE-A27D 
        5.06         8.98         4.93         5.95         0.53         0.10 
TCGA-CE-A3MD TCGA-CE-A3ME TCGA-CE-A481 TCGA-CE-A482 TCGA-CE-A483 TCGA-CE-A485 
        0.20         0.23         0.10         0.07         0.10         0.10 
TCGA-DE-A0Y2 TCGA-DE-A0Y3 TCGA-DE-A2OL TCGA-DE-A3KN TCGA-DE-A4M9 TCGA-DE-A4MA 
       15.42        36.46         5.98        15.85         4.87        16.64 
TCGA-DE-A4MC TCGA-DE-A4MD TCGA-DJ-A13O TCGA-DJ-A13P TCGA-DJ-A13R TCGA-DJ-A13S 
       17.39        12.00         7.07       138.05         3.02         8.71 
TCGA-DJ-A13U TCGA-DJ-A13V TCGA-DJ-A13W TCGA-DJ-A13X TCGA-DJ-A1QD TCGA-DJ-A1QE 
       12.92        11.90        14.93         7.99        10.98        99.98 
TCGA-DJ-A1QF TCGA-DJ-A1QH TCGA-DJ-A1QI TCGA-DJ-A1QL TCGA-DJ-A1QM TCGA-DJ-A1QO 
       18.05         7.99        15.02         6.97         0.99         1.02 
TCGA-DJ-A1QQ TCGA-DJ-A2PN TCGA-DJ-A2PO TCGA-DJ-A2PP TCGA-DJ-A2PQ TCGA-DJ-A2PR 
        5.95        10.06         7.96         5.00        20.48        10.45 
TCGA-DJ-A2PT TCGA-DJ-A2PU TCGA-DJ-A2PW TCGA-DJ-A2PX TCGA-DJ-A2PY TCGA-DJ-A2PZ 
        9.60        10.26         7.69         5.03         8.78         8.42 
TCGA-DJ-A2Q1 TCGA-DJ-A2Q2 TCGA-DJ-A2Q3 TCGA-DJ-A2Q4 TCGA-DJ-A2Q5 TCGA-DJ-A2Q6 
        9.34         6.77         9.21         9.44         9.90         8.61 
TCGA-DJ-A2Q8 TCGA-DJ-A2Q9 TCGA-DJ-A2QC TCGA-DJ-A3UM TCGA-DJ-A3UQ TCGA-DJ-A3UR 
        7.07        10.36         9.99        17.23         9.11        23.70 
TCGA-DJ-A3US TCGA-DJ-A3UT TCGA-DJ-A3UU TCGA-DJ-A3UW TCGA-DJ-A3UX TCGA-DJ-A3UY 
       20.71        15.42        17.69        43.00        11.34        13.32 
TCGA-DJ-A3UZ TCGA-DJ-A3V0 TCGA-DJ-A3V2 TCGA-DJ-A3V3 TCGA-DJ-A3V4 TCGA-DJ-A3V5 
       12.76        25.02         7.40        17.75        14.56         7.86 
TCGA-DJ-A3V7 TCGA-DJ-A3V8 TCGA-DJ-A3V9 TCGA-DJ-A3VA TCGA-DJ-A3VB TCGA-DJ-A3VD 
        9.83         8.52         7.13        11.93        11.21        11.51 
TCGA-DJ-A3VE TCGA-DJ-A3VF TCGA-DJ-A3VG TCGA-DJ-A3VJ TCGA-DJ-A3VL TCGA-DJ-A4UL 
        4.41         7.73         8.32        17.36        17.19        11.93 
TCGA-DJ-A4UQ TCGA-DJ-A4UT TCGA-DJ-A4UW TCGA-DJ-A4V0 TCGA-DJ-A4V2 TCGA-DJ-A4V4 
       10.78        12.20         9.44         9.34         3.09         3.35 
TCGA-DJ-A4V5 TCGA-DO-A1JZ TCGA-DO-A1K0 TCGA-DO-A2HM TCGA-E3-A3DY TCGA-E3-A3E0 
       16.14        54.90        21.53         2.30        31.07        66.35 
TCGA-E3-A3E1 TCGA-E3-A3E2 TCGA-E3-A3E3 TCGA-E8-A242 TCGA-E8-A2EA TCGA-E8-A3X7 
       40.18        63.16        30.28         1.12        22.29         1.48 
TCGA-E8-A413 TCGA-E8-A414 TCGA-E8-A415 TCGA-E8-A416 TCGA-E8-A417 TCGA-E8-A418 
        0.33         0.23         0.16         0.72         0.26         1.48 
TCGA-E8-A433 TCGA-E8-A436 TCGA-E8-A437 TCGA-E8-A438 TCGA-E8-A44K TCGA-E8-A44M 
        0.16         1.15         7.69         6.90         0.39         0.39 
TCGA-EL-A3CM TCGA-EL-A3CN TCGA-EL-A3CO TCGA-EL-A3CP TCGA-EL-A3CR TCGA-EL-A3CS 
       26.73       155.54        97.74       158.83         7.66        45.53 
TCGA-EL-A3CT TCGA-EL-A3CU TCGA-EL-A3CV TCGA-EL-A3CW TCGA-EL-A3CX TCGA-EL-A3CY 
       60.95       157.15        37.94        57.01        80.91         4.18 
TCGA-EL-A3CZ TCGA-EL-A3D5 TCGA-EL-A3D6 TCGA-EL-A3GO TCGA-EL-A3GQ TCGA-EL-A3GR 
       58.78        33.44       108.36        39.32        30.18       102.84 
TCGA-EL-A3GS TCGA-EL-A3GU TCGA-EL-A3GV TCGA-EL-A3GX TCGA-EL-A3GY TCGA-EL-A3H1 
       65.39       124.04        50.37       147.75       101.13        49.32 
TCGA-EL-A3H2 TCGA-EL-A3H4 TCGA-EL-A3H5 TCGA-EL-A3H7 TCGA-EL-A3H8 TCGA-EL-A3MW 
       33.47        38.66        52.73       126.97       131.15       108.66 
TCGA-EL-A3MY TCGA-EL-A3MZ TCGA-EL-A3N2 TCGA-EL-A3N3 TCGA-EL-A3T0 TCGA-EL-A3T1 
       17.49        52.47        12.16       147.42       130.72       129.57 
TCGA-EL-A3T3 TCGA-EL-A3T6 TCGA-EL-A3T7 TCGA-EL-A3T8 TCGA-EL-A3TA TCGA-EL-A3TB 
      116.91        98.20        41.29        95.38        66.90        82.82 
TCGA-EL-A3ZG TCGA-EL-A3ZH TCGA-EL-A3ZK TCGA-EL-A3ZP TCGA-EL-A3ZQ TCGA-EL-A3ZS 
       77.33        78.97        31.46        52.50        45.53         7.04 
TCGA-EL-A3ZT TCGA-EL-A4JW TCGA-EL-A4JX TCGA-EL-A4K0 TCGA-EL-A4K1 TCGA-EL-A4K2 
       44.61        19.27        45.96        19.00        19.59        19.53 
TCGA-EL-A4K4 TCGA-EL-A4K7 TCGA-EL-A4KD TCGA-EL-A4KG TCGA-EL-A4KH TCGA-EM-A1CT 
       33.60        41.13        29.95        13.32        11.87        18.18 
TCGA-EM-A1CU TCGA-EM-A1CV TCGA-EM-A1CW TCGA-EM-A1YA TCGA-EM-A1YB TCGA-EM-A22I 
       20.91        12.36        18.05        19.79        19.46        14.70 
TCGA-EM-A22J TCGA-EM-A22O TCGA-EM-A22Q TCGA-EM-A2CK TCGA-EM-A2CL TCGA-EM-A2CN 
       14.47        11.74        14.20        17.85        13.18        23.51 
TCGA-EM-A2CP TCGA-EM-A2CQ TCGA-EM-A2CS TCGA-EM-A2CT TCGA-EM-A2CU TCGA-EM-A2OV 
        2.96        12.30        15.16        10.49        13.12        22.16 
TCGA-EM-A2OW TCGA-EM-A2OX TCGA-EM-A2OZ TCGA-EM-A2P0 TCGA-EM-A2P1 TCGA-EM-A2P2 
       13.84        19.73        12.07        17.59        17.46        17.29 
TCGA-EM-A2P3 TCGA-EM-A3AJ TCGA-EM-A3AK TCGA-EM-A3AL TCGA-EM-A3AN TCGA-EM-A3AO 
       14.60        18.94        15.68        14.14        19.63        13.38 
TCGA-EM-A3AQ TCGA-EM-A3AR TCGA-EM-A3FJ TCGA-EM-A3FK TCGA-EM-A3FL TCGA-EM-A3FM 
       16.44        16.77        27.95        23.77        16.77        21.01 
TCGA-EM-A3FN TCGA-EM-A3FP TCGA-EM-A3FQ TCGA-EM-A3FR TCGA-EM-A3O6 TCGA-EM-A3O7 
       12.07        17.39        16.18        15.02        11.15         7.33 
TCGA-EM-A3O8 TCGA-EM-A3OA TCGA-EM-A3OB TCGA-EM-A3ST TCGA-EM-A3SU TCGA-EM-A4FF 
       12.53        13.91         7.82        11.51        16.41        70.62 
TCGA-EM-A4FH TCGA-EM-A4FK TCGA-EM-A4FM TCGA-EM-A4FN TCGA-EM-A4FQ TCGA-EM-A4FV 
       16.90         8.98         4.80         8.58         9.80        12.72 
TCGA-EM-A4G1 TCGA-ET-A25G TCGA-ET-A25I TCGA-ET-A25J TCGA-ET-A25K TCGA-ET-A25M 
        0.95        47.47        48.20        29.69        32.35        12.33 
TCGA-ET-A25N TCGA-ET-A25P TCGA-ET-A25R TCGA-ET-A2MX TCGA-ET-A2MY TCGA-ET-A2N0 
       14.79        18.35        20.42        54.02        22.09        16.08 
TCGA-ET-A2N1 TCGA-ET-A2N3 TCGA-ET-A2N5 TCGA-ET-A39I TCGA-ET-A39J TCGA-ET-A39K 
       29.19        19.76        58.22        13.74        71.01        72.49 
TCGA-ET-A39O TCGA-ET-A39P TCGA-ET-A39R TCGA-ET-A39S TCGA-ET-A39T TCGA-ET-A3BN 
       61.02        58.72        57.11        55.10        59.15        28.24 
TCGA-ET-A3BO TCGA-ET-A3BQ TCGA-ET-A3BS TCGA-ET-A3BT TCGA-ET-A3BU TCGA-ET-A3BV 
        5.82         2.43         5.52        24.72        38.30        42.21 
TCGA-ET-A3BW TCGA-ET-A3BX TCGA-ET-A3DO TCGA-ET-A3DP TCGA-ET-A3DQ TCGA-ET-A3DR 
        2.37         4.50        80.81        56.88        59.87        43.50 
TCGA-ET-A3DT TCGA-ET-A3DU TCGA-ET-A3DV TCGA-ET-A3DW TCGA-ET-A40Q TCGA-ET-A40R 
       17.98        25.32       132.36        24.69         7.17         4.80 
TCGA-ET-A40S TCGA-ET-A4KN TCGA-ET-A4KQ TCGA-FE-A22Z TCGA-FE-A230 TCGA-FE-A232 
        5.00         4.01         1.94        59.15        59.70        44.25 
TCGA-FE-A233 TCGA-FE-A234 TCGA-FE-A235 TCGA-FE-A236 TCGA-FE-A238 TCGA-FE-A23A 
       24.69        68.22       102.90        66.77        39.95        81.83 
TCGA-FE-A3PA TCGA-FE-A3PC TCGA-FE-A3PD TCGA-FK-A3S3 TCGA-FK-A3SB TCGA-FK-A3SD 
       94.42        85.64        78.77        46.06         4.08         0.89 
TCGA-FK-A3SE TCGA-FK-A3SG TCGA-FK-A3SH TCGA-FK-A4UB TCGA-FY-A2QD TCGA-FY-A3BL 
       21.99         0.92        48.10        91.13         1.25         1.15 
TCGA-FY-A3I4 TCGA-FY-A3ON TCGA-FY-A3R6 TCGA-FY-A3R8 TCGA-FY-A3R9 TCGA-FY-A3RA 
        1.12         1.51         0.76         4.64        16.57        18.08 
TCGA-FY-A3YR TCGA-FY-A40K TCGA-FY-A40L TCGA-FY-A40M TCGA-FY-A40N TCGA-FY-A4B3 
        6.84         4.14         6.54         4.54         0.89         1.35 
TCGA-H2-A26U TCGA-H2-A2K9 TCGA-H2-A3RH TCGA-H2-A3RI TCGA-H2-A421 TCGA-H2-A422 
       10.98        11.31        12.46         2.96         2.20         2.89 
TCGA-IM-A3EB TCGA-IM-A3ED TCGA-IM-A3U2 TCGA-IM-A41Y TCGA-IM-A420 TCGA-IM-A4EB 
       48.92        47.41        10.26         9.80         2.96         8.65 
TCGA-J8-A3NZ TCGA-J8-A3O1 TCGA-J8-A3O2 TCGA-J8-A3YE TCGA-J8-A3YF TCGA-J8-A3YG 
        2.24        27.19         1.35        27.81        24.69        22.29 
TCGA-J8-A42S TCGA-J8-A4HW TCGA-J8-A4HY TCGA-KS-A41F TCGA-KS-A41J TCGA-KS-A41L 
        2.47         2.60         0.20       120.99        15.68        86.70 
TCGA-KS-A4I1 TCGA-KS-A4I3 TCGA-KS-A4I5 TCGA-KS-A4I9 TCGA-KS-A4IC TCGA-KS-A4ID 
        5.98        12.03         6.71        17.42        14.70        20.48 
TCGA-L6-A4EP TCGA-L6-A4EQ TCGA-L6-A4ET TCGA-L6-A4EU TCGA-MK-A4N6 TCGA-MK-A4N7 
        0.59        11.87         1.12         0.72        16.60        14.47 
TCGA-MK-A4N9 
        8.71 

$subtype3
TCGA-BJ-A0Z2 TCGA-BJ-A0Z5 TCGA-BJ-A0ZH TCGA-BJ-A18Y TCGA-BJ-A3PT TCGA-BJ-A45D 
       18.21        14.73        15.12        23.34        12.07         6.48 
TCGA-BJ-A45F TCGA-CE-A484 TCGA-DE-A0XZ TCGA-DE-A4M8 TCGA-DJ-A13M TCGA-DJ-A13T 
        3.45         0.39        20.22         6.08         9.01        24.92 
TCGA-DJ-A1QG TCGA-DJ-A1QN TCGA-DJ-A2PS TCGA-DJ-A2Q7 TCGA-DJ-A2QA TCGA-DJ-A2QB 
        6.97         8.98         1.94         9.57        12.43        10.85 
TCGA-DJ-A3UK TCGA-DJ-A3UN TCGA-DJ-A3UO TCGA-DJ-A3UP TCGA-DJ-A3VM TCGA-DJ-A4UR 
        8.25        12.49        15.78         5.49        15.81        10.98 
TCGA-E3-A3DZ TCGA-E3-A3E5 TCGA-E8-A434 TCGA-EL-A3CL TCGA-EL-A3D1 TCGA-EL-A3D4 
       12.07        14.04         0.23        31.63        74.27        45.40 
TCGA-EL-A3GW TCGA-EL-A3T2 TCGA-EL-A3ZL TCGA-EL-A3ZR TCGA-EL-A4JV TCGA-EL-A4JZ 
       37.25        32.48        50.30        48.16        45.80        37.94 
TCGA-EL-A4K6 TCGA-EL-A4K9 TCGA-EM-A1CS TCGA-EM-A22K TCGA-EM-A22L TCGA-EM-A22M 
       28.73        37.78        26.86        15.72        10.45        14.50 
TCGA-EM-A22P TCGA-EM-A2CJ TCGA-EM-A3AP TCGA-EM-A3FO TCGA-EM-A3SX TCGA-EM-A3SZ 
       11.15        16.44         8.35        17.49        15.62        12.79 
TCGA-EM-A4FO TCGA-EM-A4FR TCGA-EM-A4FU TCGA-ET-A25L TCGA-ET-A25O TCGA-ET-A2N4 
        8.35         5.03        37.87        14.79        27.09         2.66 
TCGA-ET-A39L TCGA-ET-A3BP TCGA-ET-A3DS TCGA-ET-A40P TCGA-ET-A40T TCGA-FE-A237 
       65.33         4.18         0.30         3.22         2.10        81.34 
TCGA-FE-A3PB TCGA-FY-A3R7 TCGA-FY-A3W9 TCGA-FY-A3WA TCGA-FY-A4B4 TCGA-GE-A2C6 
       85.12         0.03         0.76         0.95         1.15        12.53 
TCGA-IM-A3U3 TCGA-IM-A41Z TCGA-J8-A3O0 TCGA-J8-A3YD TCGA-J8-A3YH TCGA-KS-A41I 
       16.87         9.63        43.17        31.82         5.72        15.95 
TCGA-KS-A4I7 TCGA-KS-A4IB 
       12.36        64.54 

subtype1 subtype2 subtype3 
    0.03     0.07     0.03 
subtype1 subtype2 subtype3 
   98.56   158.83    85.12 
subtype1 subtype2 subtype3 
  12.260   14.470   13.415 
[1] "0.0 - 98.6 (12.3)"  "0.1 - 158.8 (14.5)" "0.0 - 85.1 (13.4)" 
  [1] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [25] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [31] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [43] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[103] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[109] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[193] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[199] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[205] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[217] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[223] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[235] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[241] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[247] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[253] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[259] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[265] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[271] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[277] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[283] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[289] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[295] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[301] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[307] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[313] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[319] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[325] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[331] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[337] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[343] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[349] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[355] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[361] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[367] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[373] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[379] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[385] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[391] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[397] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[403] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[409] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[415] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[421] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[427] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[433] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[439] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[445] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[451] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[457] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[463] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[469] "subtype2" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [25] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [31] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [43] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[103] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[109] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[193] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[199] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[205] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[217] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[223] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[235] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[241] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[247] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[253] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[259] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[265] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[271] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[277] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[283] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[289] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[295] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[301] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[307] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[313] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[319] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[325] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[331] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[337] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[343] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[349] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[355] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[361] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[367] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[373] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[379] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[385] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[391] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[397] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[403] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[409] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[415] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[421] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[427] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[433] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[439] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[445] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[451] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[457] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[463] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[469] "subtype2" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [25] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [31] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [43] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[103] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[109] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[193] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[199] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[205] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[217] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[223] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[235] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[241] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[247] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[253] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[259] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[265] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[271] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[277] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[283] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[289] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[295] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[301] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[307] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[313] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[319] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[325] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[331] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[337] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[343] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[349] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[355] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[361] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[367] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[373] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[379] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[385] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[391] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[397] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[403] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[409] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[415] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[421] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[427] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[433] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[439] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[445] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[451] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[457] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[463] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[469] "subtype2" "subtype2"
D1V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV STAGE IVA STAGE IVC
  subtype1       8       10         9        1         2         0
  subtype2     217       32        84        0        32         4
  subtype3      45        7        13        1         7         1
D1V3, multiclass
          vv
clus        T1  T2  T3  T4
  subtype1   5  12  12   1
  subtype2 107 119 127  16
  subtype3  25  28  19   2
D1V4, multiclass
D1V5, binary
          cls
clus         0   1
  subtype1  17   6
  subtype2 160 176
  subtype3  37  32
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   17    6
  subtype2  160  176
  subtype3   37   32
   clus
vv  subtype1 subtype2 subtype3
  0       17      160       37
  1        6      176       32
          vv
clus        M0  M1  MX
  subtype1   9   0  21
  subtype2 211   6 153
  subtype3  38   2  34
D1V6, multiclass
D1V7, binary
          cls
clus         0   1
  subtype1  18  12
  subtype2 277  94
  subtype3  55  19
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   18   12
  subtype2  277   94
  subtype3   55   19
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       18      277       55
  MALE         12       94       19
          vv
clus       OTHER  SPECIFY THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL
  subtype1              0                                            19
  subtype2              8                                           265
  subtype3              1                                            50
          vv
clus       THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED)
  subtype1                                                                     10
  subtype2                                                                     67
  subtype3                                                                     20
          vv
clus       THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES)
  subtype1                                                                   1
  subtype2                                                                  31
  subtype3                                                                   3
D1V8, multiclass
D1V9, binary
          cls
clus         0   1
  subtype1   2  28
  subtype2  11 360
  subtype3   1  73
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2   28
  subtype2   11  360
  subtype3    1   73
     clus
vv    subtype1 subtype2 subtype3
  NO         2       11        1
  YES       28      360       73
D1V10, binary
          cls
clus         0   1
  subtype1  26   1
  subtype2 307  16
  subtype3  68   0
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   26    1
  subtype2  307   16
  subtype3   68    0
     clus
vv    subtype1 subtype2 subtype3
  NO        26      307       68
  YES        1       16        0
          vv
clus       MINIMAL (T3) MODERATE/ADVANCED (T4A) NONE VERY ADVANCED (T4B)
  subtype1            6                       0   22                   1
  subtype2          103                      15  242                   0
  subtype3           15                       0   56                   0
D1V11, multiclass
          vv
clus        R0  R1  R2  RX
  subtype1  22   3   0   3
  subtype2 291  37   3  18
  subtype3  56   6   0   7
D1V12, multiclass
D1V13, continuous
D1V14, binary
          cls
clus         0   1
  subtype1  12  18
  subtype2 163 200
  subtype3  39  33
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   12   18
  subtype2  163  200
  subtype3   39   33
            clus
vv           subtype1 subtype2 subtype3
  MULTIFOCAL       12      163       39
  UNIFOCAL         18      200       33
D1V15, continuous

Clustering(2) Variable = METHLYATION_CNMF
D2V1, survival
          sevent
clus2        0   1
  subtype1 140   3
  subtype2  72   4
  subtype3 247   6
subtype1 subtype2 subtype3 
     143       76      253 
subtype1 subtype2 subtype3 
       3        4        6 
$subtype1
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0ZA TCGA-BJ-A0ZC TCGA-BJ-A0ZE 
       24.79        13.78        18.21        18.87        11.57        16.73 
TCGA-BJ-A0ZG TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A191 TCGA-BJ-A192 TCGA-BJ-A28V 
        7.56        23.34        20.58         4.80         8.09         5.10 
TCGA-BJ-A291 TCGA-BJ-A3PT TCGA-BJ-A45C TCGA-BJ-A45D TCGA-BJ-A45F TCGA-BJ-A45G 
       14.50        12.07         5.72         6.48         3.45         6.35 
TCGA-BJ-A45K TCGA-CE-A3ME TCGA-CE-A484 TCGA-DE-A2OL TCGA-DE-A4M9 TCGA-DJ-A13M 
        8.98         0.23         0.39         5.98         4.87         9.01 
TCGA-DJ-A13S TCGA-DJ-A13W TCGA-DJ-A1QG TCGA-DJ-A1QL TCGA-DJ-A1QM TCGA-DJ-A2PP 
        8.71        14.93         6.97         6.97         0.99         5.00 
TCGA-DJ-A2PS TCGA-DJ-A2Q0 TCGA-DJ-A2Q2 TCGA-DJ-A2QB TCGA-DJ-A3UP TCGA-DJ-A3UR 
        1.94         8.12         6.77        10.85         5.49        23.70 
TCGA-DJ-A3UT TCGA-DJ-A3UX TCGA-DJ-A3UY TCGA-DJ-A3UZ TCGA-DJ-A3VG TCGA-DJ-A3VL 
       15.42        11.34        13.32        12.76         8.32        17.19 
TCGA-DJ-A3VM TCGA-DJ-A4UR TCGA-E3-A3DZ TCGA-E8-A413 TCGA-E8-A415 TCGA-E8-A416 
       15.81        10.98        12.07         0.33         0.16         0.72 
TCGA-E8-A434 TCGA-EL-A3CZ TCGA-EL-A3D4 TCGA-EL-A3D5 TCGA-EL-A3GO TCGA-EL-A3GW 
        0.23        58.78        45.40        33.44        39.32        37.25 
TCGA-EL-A3H1 TCGA-EL-A3H2 TCGA-EL-A3T0 TCGA-EL-A3T2 TCGA-EL-A3TA TCGA-EL-A3ZG 
       49.32        33.47       130.72        32.48        66.90        77.33 
TCGA-EL-A3ZH TCGA-EL-A3ZR TCGA-EL-A4JV TCGA-EL-A4K2 TCGA-EL-A4K6 TCGA-EL-A4KI 
       78.97        48.16        45.80        19.53        28.73         8.68 
TCGA-EM-A1CW TCGA-EM-A1YA TCGA-EM-A1YB TCGA-EM-A1YC TCGA-EM-A1YD TCGA-EM-A1YE 
       18.05        19.79        19.46        54.21        57.01        54.08 
TCGA-EM-A22J TCGA-EM-A22K TCGA-EM-A22L TCGA-EM-A22N TCGA-EM-A22Q TCGA-EM-A2CJ 
       14.47        15.72        10.45        10.65        14.20        16.44 
TCGA-EM-A2CK TCGA-EM-A2CL TCGA-EM-A2CN TCGA-EM-A2CO TCGA-EM-A2CQ TCGA-EM-A2CR 
       17.85        13.18        23.51         6.02        12.30        13.64 
TCGA-EM-A2CT TCGA-EM-A2OV TCGA-EM-A2OW TCGA-EM-A2OY TCGA-EM-A2P2 TCGA-EM-A3AI 
       10.49        22.16        13.84        17.59        17.29        17.46 
TCGA-EM-A3AL TCGA-EM-A3AP TCGA-EM-A3AR TCGA-EM-A3FL TCGA-EM-A3FN TCGA-EM-A3FP 
       14.14         8.35        16.77        16.77        12.07        17.39 
TCGA-EM-A3FR TCGA-EM-A3O6 TCGA-EM-A3O8 TCGA-EM-A3O9 TCGA-EM-A3OA TCGA-EM-A3OB 
       15.02        11.15        12.53         9.24        13.91         7.82 
TCGA-EM-A3ST TCGA-EM-A3SY TCGA-EM-A4FH TCGA-EM-A4FK TCGA-EM-A4FR TCGA-EM-A4FU 
       11.51        13.51        16.90         8.98         5.03        37.87 
TCGA-EM-A4G1 TCGA-ET-A25I TCGA-ET-A25P TCGA-ET-A2N1 TCGA-ET-A2N3 TCGA-ET-A2N5 
        0.95        48.20        18.35        29.19        19.76        58.22 
TCGA-ET-A39I TCGA-ET-A39L TCGA-ET-A39N TCGA-ET-A3DS TCGA-ET-A3DV TCGA-ET-A40P 
       13.74        65.33        98.56         0.30       132.36         3.22 
TCGA-ET-A4KQ TCGA-FE-A239 TCGA-FK-A3SD TCGA-FY-A2QD TCGA-FY-A3I4 TCGA-FY-A3I5 
        1.94        33.63         0.89         1.25         1.12         1.64 
TCGA-FY-A3NM TCGA-FY-A3NP TCGA-FY-A3R7 TCGA-FY-A3R9 TCGA-FY-A3W9 TCGA-FY-A3WA 
        0.99        16.14         0.03        16.57         0.76         0.95 
TCGA-FY-A40M TCGA-FY-A40N TCGA-H2-A2K9 TCGA-H2-A3RH TCGA-IM-A41Z TCGA-J8-A3O0 
        4.54         0.89        11.31        12.46         9.63        43.17 
TCGA-J8-A3YD TCGA-J8-A3YE TCGA-KS-A41I TCGA-KS-A41L TCGA-KS-A4I3 
       31.82        27.81        15.95        86.70        12.03 

$subtype2
TCGA-BJ-A0Z3 TCGA-BJ-A0ZJ TCGA-BJ-A28T TCGA-BJ-A28W TCGA-BJ-A28X TCGA-BJ-A28Z 
       16.34        17.69         2.76         1.12        17.49         1.22 
TCGA-BJ-A3PR TCGA-BJ-A45E TCGA-CE-A27D TCGA-CE-A481 TCGA-CE-A485 TCGA-DE-A4M8 
        8.02         0.03         0.10         0.10         0.10         6.08 
TCGA-DJ-A13O TCGA-DJ-A13R TCGA-DJ-A2PT TCGA-DJ-A2PX TCGA-DJ-A2Q1 TCGA-DJ-A2Q3 
        7.07         3.02         9.60         5.03         9.34         9.21 
TCGA-DJ-A2Q5 TCGA-DJ-A2Q9 TCGA-DJ-A3US TCGA-DJ-A3UW TCGA-DJ-A3V2 TCGA-DJ-A3VD 
        9.90        10.36        20.71        43.00         7.40        11.51 
TCGA-DJ-A3VF TCGA-DJ-A4UT TCGA-DJ-A4V0 TCGA-DJ-A4V5 TCGA-DO-A2HM TCGA-E8-A242 
        7.73        12.20         9.34        16.14         2.30         1.12 
TCGA-E8-A2EA TCGA-E8-A414 TCGA-E8-A44M TCGA-EL-A3CO TCGA-EL-A3CT TCGA-EL-A3CU 
       22.29         0.23         0.39        97.74        60.95       157.15 
TCGA-EL-A3CV TCGA-EL-A3CW TCGA-EL-A3CY TCGA-EL-A3D6 TCGA-EL-A3N3 TCGA-EL-A3T1 
       37.94        57.01         4.18       108.36       147.42       129.57 
TCGA-EL-A3T6 TCGA-EL-A3T9 TCGA-EL-A3ZS TCGA-EL-A4JX TCGA-EL-A4JZ TCGA-EM-A22M 
       98.20         5.72         7.04        45.96        37.94        14.50 
TCGA-EM-A22P TCGA-EM-A2CP TCGA-EM-A2P1 TCGA-EM-A3AJ TCGA-EM-A3FQ TCGA-EM-A3O3 
       11.15         2.96        17.46        18.94        16.18        14.50 
TCGA-EM-A3SU TCGA-EM-A4FO TCGA-ET-A39M TCGA-ET-A39R TCGA-ET-A3BS TCGA-ET-A3BV 
       16.41         8.35        84.89        57.11         5.52        42.21 
TCGA-ET-A3DO TCGA-ET-A3DQ TCGA-ET-A3DT TCGA-ET-A3DU TCGA-ET-A40S TCGA-ET-A4KN 
       80.81        59.87        17.98        25.32         5.00         4.01 
TCGA-FE-A230 TCGA-FE-A23A TCGA-FY-A3R6 TCGA-GE-A2C6 TCGA-H2-A26U TCGA-H2-A421 
       59.70        81.83         0.76        12.53        10.98         2.20 
TCGA-IM-A3EB TCGA-IM-A420 TCGA-IM-A4EB TCGA-KS-A4ID 
       48.92         2.96         8.65        20.48 

$subtype3
TCGA-BJ-A0Z5 TCGA-BJ-A0Z9 TCGA-BJ-A0ZB TCGA-BJ-A0ZH TCGA-BJ-A28R TCGA-BJ-A290 
       14.73         8.25         4.01        15.12         4.87        20.58 
TCGA-BJ-A2NA TCGA-BJ-A3PU TCGA-BJ-A45H TCGA-BJ-A45I TCGA-BJ-A45J TCGA-BJ-A4O8 
        2.10        10.03         7.79         6.15         5.06         4.93 
TCGA-BJ-A4O9 TCGA-CE-A13K TCGA-CE-A3MD TCGA-CE-A482 TCGA-CE-A483 TCGA-DE-A0XZ 
        5.95         0.53         0.20         0.07         0.10        20.22 
TCGA-DE-A0Y2 TCGA-DE-A0Y3 TCGA-DE-A3KN TCGA-DE-A4MA TCGA-DE-A4MB TCGA-DE-A4MC 
       15.42        36.46        15.85        16.64        11.57        17.39 
TCGA-DE-A4MD TCGA-DJ-A13P TCGA-DJ-A13T TCGA-DJ-A13U TCGA-DJ-A13V TCGA-DJ-A13X 
       12.00       138.05        24.92        12.92        11.90         7.99 
TCGA-DJ-A1QD TCGA-DJ-A1QE TCGA-DJ-A1QF TCGA-DJ-A1QH TCGA-DJ-A1QI TCGA-DJ-A1QN 
       10.98        99.98        18.05         7.99        15.02         8.98 
TCGA-DJ-A1QO TCGA-DJ-A1QQ TCGA-DJ-A2PN TCGA-DJ-A2PO TCGA-DJ-A2PQ TCGA-DJ-A2PR 
        1.02         5.95        10.06         7.96        20.48        10.45 
TCGA-DJ-A2PU TCGA-DJ-A2PV TCGA-DJ-A2PW TCGA-DJ-A2PY TCGA-DJ-A2PZ TCGA-DJ-A2Q4 
       10.26         7.96         7.69         8.78         8.42         9.44 
TCGA-DJ-A2Q6 TCGA-DJ-A2Q7 TCGA-DJ-A2Q8 TCGA-DJ-A2QA TCGA-DJ-A2QC TCGA-DJ-A3UK 
        8.61         9.57         7.07        12.43         9.99         8.25 
TCGA-DJ-A3UM TCGA-DJ-A3UN TCGA-DJ-A3UO TCGA-DJ-A3UQ TCGA-DJ-A3UU TCGA-DJ-A3V0 
       17.23        12.49        15.78         9.11        17.69        25.02 
TCGA-DJ-A3V3 TCGA-DJ-A3V4 TCGA-DJ-A3V5 TCGA-DJ-A3V7 TCGA-DJ-A3V8 TCGA-DJ-A3V9 
       17.75        14.56         7.86         9.83         8.52         7.13 
TCGA-DJ-A3VA TCGA-DJ-A3VB TCGA-DJ-A3VE TCGA-DJ-A3VJ TCGA-DJ-A4UL TCGA-DJ-A4UQ 
       11.93        11.21         4.41        17.36        11.93        10.78 
TCGA-DJ-A4UW TCGA-DJ-A4V2 TCGA-DJ-A4V4 TCGA-DO-A1JZ TCGA-DO-A1K0 TCGA-E3-A3DY 
        9.44         3.09         3.35        54.90        21.53        31.07 
TCGA-E3-A3E0 TCGA-E3-A3E1 TCGA-E3-A3E2 TCGA-E3-A3E3 TCGA-E3-A3E5 TCGA-E8-A3X7 
       66.35        40.18        63.16        30.28        14.04         1.48 
TCGA-E8-A417 TCGA-E8-A418 TCGA-E8-A432 TCGA-E8-A433 TCGA-E8-A436 TCGA-E8-A437 
        0.26         1.48         0.53         0.16         1.15         7.69 
TCGA-E8-A438 TCGA-E8-A44K TCGA-EL-A3CL TCGA-EL-A3CM TCGA-EL-A3CN TCGA-EL-A3CP 
        6.90         0.39        31.63        26.73       155.54       158.83 
TCGA-EL-A3CR TCGA-EL-A3CS TCGA-EL-A3CX TCGA-EL-A3D1 TCGA-EL-A3GP TCGA-EL-A3GQ 
        7.66        45.53        80.91        74.27         1.41        30.18 
TCGA-EL-A3GR TCGA-EL-A3GS TCGA-EL-A3GU TCGA-EL-A3GV TCGA-EL-A3GX TCGA-EL-A3GY 
      102.84        65.39       124.04        50.37       147.75       101.13 
TCGA-EL-A3H4 TCGA-EL-A3H5 TCGA-EL-A3H7 TCGA-EL-A3H8 TCGA-EL-A3MW TCGA-EL-A3MY 
       38.66        52.73       126.97       131.15       108.66        17.49 
TCGA-EL-A3MZ TCGA-EL-A3N2 TCGA-EL-A3T3 TCGA-EL-A3T7 TCGA-EL-A3T8 TCGA-EL-A3TB 
       52.47        12.16       116.91        41.29        95.38        82.82 
TCGA-EL-A3ZK TCGA-EL-A3ZL TCGA-EL-A3ZP TCGA-EL-A3ZQ TCGA-EL-A3ZT TCGA-EL-A4JW 
       31.46        50.30        52.50        45.53        44.61        19.27 
TCGA-EL-A4K0 TCGA-EL-A4K1 TCGA-EL-A4K4 TCGA-EL-A4K7 TCGA-EL-A4K9 TCGA-EL-A4KD 
       19.00        19.59        33.60        41.13        37.78        29.95 
TCGA-EL-A4KG TCGA-EL-A4KH TCGA-EM-A1CS TCGA-EM-A1CT TCGA-EM-A1CU TCGA-EM-A1CV 
       13.32        11.87        26.86        18.18        20.91        12.36 
TCGA-EM-A22I TCGA-EM-A22O TCGA-EM-A2CS TCGA-EM-A2CU TCGA-EM-A2OX TCGA-EM-A2OZ 
       14.70        11.74        15.16        13.12        19.73        12.07 
TCGA-EM-A2P0 TCGA-EM-A2P3 TCGA-EM-A3AK TCGA-EM-A3AN TCGA-EM-A3AO TCGA-EM-A3AQ 
       17.59        14.60        15.68        19.63        13.38        16.44 
TCGA-EM-A3FJ TCGA-EM-A3FK TCGA-EM-A3FM TCGA-EM-A3FO TCGA-EM-A3O7 TCGA-EM-A3SX 
       27.95        23.77        21.01        17.49         7.33        15.62 
TCGA-EM-A3SZ TCGA-EM-A4FF TCGA-EM-A4FM TCGA-EM-A4FN TCGA-EM-A4FQ TCGA-EM-A4FV 
       12.79        70.62         4.80         8.58         9.80        12.72 
TCGA-ET-A25G TCGA-ET-A25J TCGA-ET-A25K TCGA-ET-A25L TCGA-ET-A25M TCGA-ET-A25N 
       47.47        29.69        32.35        14.79        12.33        14.79 
TCGA-ET-A25O TCGA-ET-A25R TCGA-ET-A2MX TCGA-ET-A2MY TCGA-ET-A2MZ TCGA-ET-A2N0 
       27.09        20.42        54.02        22.09        12.26        16.08 
TCGA-ET-A2N4 TCGA-ET-A39J TCGA-ET-A39K TCGA-ET-A39O TCGA-ET-A39P TCGA-ET-A39S 
        2.66        71.01        72.49        61.02        58.72        55.10 
TCGA-ET-A39T TCGA-ET-A3BN TCGA-ET-A3BO TCGA-ET-A3BP TCGA-ET-A3BQ TCGA-ET-A3BT 
       59.15        28.24         5.82         4.18         2.43        24.72 
TCGA-ET-A3BU TCGA-ET-A3BW TCGA-ET-A3BX TCGA-ET-A3DP TCGA-ET-A3DR TCGA-ET-A3DW 
       38.30         2.37         4.50        56.88        43.50        24.69 
TCGA-ET-A40Q TCGA-ET-A40R TCGA-ET-A40T TCGA-FE-A22Z TCGA-FE-A231 TCGA-FE-A232 
        7.17         4.80         2.10        59.15        31.59        44.25 
TCGA-FE-A233 TCGA-FE-A234 TCGA-FE-A235 TCGA-FE-A236 TCGA-FE-A237 TCGA-FE-A238 
       24.69        68.22       102.90        66.77        81.34        39.95 
TCGA-FE-A3PA TCGA-FE-A3PB TCGA-FE-A3PC TCGA-FE-A3PD TCGA-FK-A3S3 TCGA-FK-A3SB 
       94.42        85.12        85.64        78.77        46.06         4.08 
TCGA-FK-A3SE TCGA-FK-A3SG TCGA-FK-A3SH TCGA-FK-A4UB TCGA-FY-A3BL TCGA-FY-A3ON 
       21.99         0.92        48.10        91.13         1.15         1.51 
TCGA-FY-A3R8 TCGA-FY-A3RA TCGA-FY-A3YR TCGA-FY-A40K TCGA-FY-A40L TCGA-FY-A4B3 
        4.64        18.08         6.84         4.14         6.54         1.35 
TCGA-FY-A4B4 TCGA-H2-A3RI TCGA-H2-A422 TCGA-IM-A3ED TCGA-IM-A3U2 TCGA-IM-A3U3 
        1.15         2.96         2.89        47.41        10.26        16.87 
TCGA-IM-A41Y TCGA-J8-A3NZ TCGA-J8-A3O1 TCGA-J8-A3O2 TCGA-J8-A3YF TCGA-J8-A3YG 
        9.80         2.24        27.19         1.35        24.69        22.29 
TCGA-J8-A3YH TCGA-J8-A42S TCGA-J8-A4HW TCGA-J8-A4HY TCGA-KS-A41F TCGA-KS-A41J 
        5.72         2.47         2.60         0.20       120.99        15.68 
TCGA-KS-A4I1 TCGA-KS-A4I5 TCGA-KS-A4I7 TCGA-KS-A4I9 TCGA-KS-A4IB TCGA-KS-A4IC 
        5.98         6.71        12.36        17.42        64.54        14.70 
TCGA-L6-A4EP TCGA-L6-A4EQ TCGA-L6-A4ET TCGA-L6-A4EU TCGA-MK-A4N6 TCGA-MK-A4N7 
        0.59        11.87         1.12         0.72        16.60        14.47 
TCGA-MK-A4N9 
        8.71 

subtype1 subtype2 subtype3 
    0.03     0.03     0.07 
subtype1 subtype2 subtype3 
  132.36   157.15   158.83 
subtype1 subtype2 subtype3 
   13.64    11.33    15.02 
[1] "0.0 - 132.4 (13.6)" "0.0 - 157.2 (11.3)" "0.1 - 158.8 (15.0)"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [19] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [25] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [31] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [37] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [43] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [49] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [55] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [61] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [85] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [91] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [97] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[115] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[121] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[133] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[139] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[145] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[151] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[163] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[175] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[181] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[187] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[193] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[199] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[205] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[211] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[217] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[223] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[229] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[235] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[241] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[247] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[253] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[259] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[265] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[271] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[277] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[283] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[289] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[295] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[301] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[307] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[313] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[319] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[325] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[331] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[337] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[343] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[349] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[355] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[361] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[367] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[373] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[379] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[385] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[391] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[397] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[403] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[409] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[415] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[421] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[427] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[433] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[439] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[445] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[451] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[457] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[463] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[469] "subtype3" "subtype3" "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [19] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [25] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [31] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [37] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [43] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [49] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [55] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [61] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [85] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [91] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [97] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[115] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[121] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[133] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[139] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[145] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[151] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[163] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[175] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[181] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[187] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[193] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[199] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[205] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[211] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[217] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[223] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[229] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[235] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[241] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[247] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[253] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[259] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[265] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[271] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[277] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[283] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[289] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[295] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[301] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[307] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[313] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[319] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[325] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[331] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[337] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[343] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[349] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[355] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[361] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[367] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[373] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[379] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[385] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[391] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[397] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[403] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[409] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[415] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[421] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[427] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[433] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[439] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[445] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[451] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[457] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[463] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[469] "subtype3" "subtype3" "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [19] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [25] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [31] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [37] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [43] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [49] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [55] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [61] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [85] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [91] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [97] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[115] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[121] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[133] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[139] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[145] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[151] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[163] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[175] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[181] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[187] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[193] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[199] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[205] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[211] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[217] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[223] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[229] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[235] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[241] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[247] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[253] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[259] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[265] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[271] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[277] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[283] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[289] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[295] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[301] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[307] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[313] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[319] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[325] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[331] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[337] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[343] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[349] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[355] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[361] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[367] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[373] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[379] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[385] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[391] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[397] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[403] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[409] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[415] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[421] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[427] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[433] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[439] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[445] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[451] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[457] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[463] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[469] "subtype3" "subtype3" "subtype3" "subtype3"
D2V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV STAGE IVA STAGE IVC
  subtype1      83       29        26        1         3         2
  subtype2      51        2        18        1         7         0
  subtype3     137       19        62        0        31         3
D2V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 52 54 38  1
  subtype2 26 24 26  2
  subtype3 60 82 94 16
D2V4, multiclass
D2V5, binary
          cls
clus         0   1
  subtype1  94  27
  subtype2  31  45
  subtype3  91 142
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   94   27
  subtype2   31   45
  subtype3   91  142
   clus
vv  subtype1 subtype2 subtype3
  0       94       31       91
  1       27       45      142
          vv
clus        M0  M1  MX
  subtype1  66   3  75
  subtype2  47   0  32
  subtype3 146   5 102
D2V6, multiclass
D2V7, binary
          cls
clus         0   1
  subtype1 105  40
  subtype2  60  19
  subtype3 186  67
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  105   40
  subtype2   60   19
  subtype3  186   67
        clus
vv       subtype1 subtype2 subtype3
  FEMALE      105       60      186
  MALE         40       19       67
          vv
clus       OTHER  SPECIFY THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL
  subtype1              2                                            66
  subtype2              2                                            65
  subtype3              5                                           203
          vv
clus       THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED)
  subtype1                                                                     77
  subtype2                                                                      6
  subtype3                                                                     16
          vv
clus       THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES)
  subtype1                                                                   0
  subtype2                                                                   6
  subtype3                                                                  29
D2V8, multiclass
D2V9, binary
          cls
clus         0   1
  subtype1   1 144
  subtype2   2  77
  subtype3  11 242
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1  144
  subtype2    2   77
  subtype3   11  242
     clus
vv    subtype1 subtype2 subtype3
  NO         1        2       11
  YES      144       77      242
D2V10, binary
          cls
clus         0   1
  subtype1 118   6
  subtype2  67   4
  subtype3 217   7
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  118    6
  subtype2   67    4
  subtype3  217    7
     clus
vv    subtype1 subtype2 subtype3
  NO       118       67      217
  YES        6        4        7
          vv
clus       MINIMAL (T3) MODERATE/ADVANCED (T4A) NONE VERY ADVANCED (T4B)
  subtype1           20                       0  119                   0
  subtype2           20                       1   54                   1
  subtype3           84                      14  149                   0
D2V11, multiclass
          vv
clus        R0  R1  R2  RX
  subtype1 118   8   0   7
  subtype2  60   8   0   4
  subtype3 193  30   3  17
D2V12, multiclass
D2V13, continuous
D2V14, binary
          cls
clus         0   1
  subtype1  65  77
  subtype2  34  43
  subtype3 116 132
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   65   77
  subtype2   34   43
  subtype3  116  132
            clus
vv           subtype1 subtype2 subtype3
  MULTIFOCAL       65       34      116
  UNIFOCAL         77       43      132
D2V15, continuous

Clustering(3) Variable = RPPA_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1 56  4
  subtype2 72  4
  subtype3 70  4
subtype1 subtype2 subtype3 
      60       76       74 
subtype1 subtype2 subtype3 
       4        4        4 
$subtype1
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0Z3 TCGA-BJ-A0ZA TCGA-BJ-A0ZC 
       24.79        13.78        18.21        16.34        18.87        11.57 
TCGA-BJ-A0ZE TCGA-BJ-A0ZG TCGA-BJ-A0ZJ TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-DE-A3KN 
       16.73         7.56        17.69        23.34        20.58        15.85 
TCGA-DJ-A13M TCGA-DJ-A13W TCGA-DJ-A13X TCGA-DJ-A1QF TCGA-DJ-A1QM TCGA-DJ-A2PN 
        9.01        14.93         7.99        18.05         0.99        10.06 
TCGA-DJ-A2PO TCGA-DJ-A2PV TCGA-DJ-A2PZ TCGA-DJ-A2Q2 TCGA-DJ-A2Q6 TCGA-DJ-A2Q7 
        7.96         7.96         8.42         6.77         8.61         9.57 
TCGA-DJ-A2Q9 TCGA-DJ-A2QA TCGA-DJ-A2QC TCGA-E3-A3DZ TCGA-EL-A3CL TCGA-EL-A3CN 
       10.36        12.43         9.99        12.07        31.63       155.54 
TCGA-EL-A3CO TCGA-EL-A3CP TCGA-EL-A3CU TCGA-EL-A3CW TCGA-EL-A3CY TCGA-EL-A3CZ 
       97.74       158.83       157.15        57.01         4.18        58.78 
TCGA-EL-A3D4 TCGA-EL-A3D5 TCGA-EL-A3GV TCGA-EL-A3H1 TCGA-EM-A1CW TCGA-EM-A1YD 
       45.40        33.44        50.37        49.32        18.05        57.01 
TCGA-EM-A22L TCGA-EM-A2CJ TCGA-EM-A2CK TCGA-EM-A2CL TCGA-EM-A2CQ TCGA-EM-A2CU 
       10.45        16.44        17.85        13.18        12.30        13.12 
TCGA-EM-A2OV TCGA-EM-A3AJ TCGA-EM-A3AL TCGA-EM-A3AN TCGA-EM-A3AP TCGA-EM-A3FL 
       22.16        18.94        14.14        19.63         8.35        16.77 
TCGA-ET-A2N5 TCGA-ET-A39I TCGA-ET-A3BP TCGA-ET-A3DP TCGA-FY-A2QD TCGA-J8-A3O0 
       58.22        13.74         4.18        56.88         1.25        43.17 

$subtype2
TCGA-BJ-A0Z5 TCGA-BJ-A0Z9 TCGA-BJ-A0ZB TCGA-BJ-A192 TCGA-BJ-A28R TCGA-BJ-A290 
       14.73         8.25         4.01         8.09         4.87        20.58 
TCGA-BJ-A2NA TCGA-CE-A3ME TCGA-DE-A0Y2 TCGA-DJ-A13O TCGA-DJ-A13R TCGA-DJ-A13S 
        2.10         0.23        15.42         7.07         3.02         8.71 
TCGA-DJ-A1QD TCGA-DJ-A1QE TCGA-DJ-A1QG TCGA-DJ-A1QO TCGA-DJ-A2PP TCGA-DJ-A2PY 
       10.98        99.98         6.97         1.02         5.00         8.78 
TCGA-DJ-A2Q0 TCGA-DJ-A2Q8 TCGA-DJ-A2QB TCGA-DO-A1K0 TCGA-E3-A3DY TCGA-E3-A3E1 
        8.12         7.07        10.85        21.53        31.07        40.18 
TCGA-E3-A3E3 TCGA-E3-A3E5 TCGA-E8-A2EA TCGA-EL-A3CM TCGA-EL-A3CS TCGA-EL-A3CT 
       30.28        14.04        22.29        26.73        45.53        60.95 
TCGA-EL-A3CV TCGA-EL-A3D6 TCGA-EL-A3GS TCGA-EL-A3GU TCGA-EL-A3GY TCGA-EL-A3H4 
       37.94       108.36        65.39       124.04       101.13        38.66 
TCGA-EL-A3H5 TCGA-EL-A3H7 TCGA-EL-A3MW TCGA-EL-A3MZ TCGA-EL-A3N2 TCGA-EL-A3N3 
       52.73       126.97       108.66        52.47        12.16       147.42 
TCGA-EM-A1CT TCGA-EM-A1YA TCGA-EM-A1YB TCGA-EM-A1YC TCGA-EM-A22I TCGA-EM-A22J 
       18.18        19.79        19.46        54.21        14.70        14.47 
TCGA-EM-A22O TCGA-EM-A2CO TCGA-EM-A2OY TCGA-EM-A2P1 TCGA-EM-A3FP TCGA-ET-A25G 
       11.74         6.02        17.59        17.46        17.39        47.47 
TCGA-ET-A25L TCGA-ET-A25M TCGA-ET-A25O TCGA-ET-A2MY TCGA-ET-A2N0 TCGA-ET-A39P 
       14.79        12.33        27.09        22.09        16.08        58.72 
TCGA-ET-A39T TCGA-ET-A3BT TCGA-ET-A3DO TCGA-ET-A3DW TCGA-FE-A22Z TCGA-FE-A230 
       59.15        24.72        80.81        24.69        59.15        59.70 
TCGA-FE-A231 TCGA-FE-A232 TCGA-FE-A234 TCGA-FE-A236 TCGA-FE-A237 TCGA-FE-A23A 
       31.59        44.25        68.22        66.77        81.34        81.83 
TCGA-FY-A3BL TCGA-IM-A3EB TCGA-J8-A3NZ TCGA-J8-A3O1 
        1.15        48.92         2.24        27.19 

$subtype3
TCGA-BJ-A191 TCGA-BJ-A28T TCGA-BJ-A28V TCGA-BJ-A28W TCGA-BJ-A28Z TCGA-BJ-A291 
        4.80         2.76         5.10         1.12         1.22        14.50 
TCGA-CE-A13K TCGA-CE-A27D TCGA-CE-A3MD TCGA-DE-A2OL TCGA-DJ-A13V TCGA-DJ-A1QI 
        0.53         0.10         0.20         5.98        11.90        15.02 
TCGA-DJ-A1QL TCGA-DJ-A1QN TCGA-DJ-A2PQ TCGA-DJ-A2PR TCGA-DJ-A2PS TCGA-DJ-A2PU 
        6.97         8.98        20.48        10.45         1.94        10.26 
TCGA-DJ-A2PW TCGA-DJ-A2Q1 TCGA-DJ-A2Q4 TCGA-DJ-A2Q5 TCGA-DO-A1JZ TCGA-E3-A3E0 
        7.69         9.34         9.44         9.90        54.90        66.35 
TCGA-EL-A3CR TCGA-EL-A3CX TCGA-EL-A3D1 TCGA-EL-A3GO TCGA-EL-A3GP TCGA-EL-A3GQ 
        7.66        80.91        74.27        39.32         1.41        30.18 
TCGA-EL-A3GR TCGA-EL-A3GW TCGA-EL-A3GX TCGA-EL-A3H2 TCGA-EL-A3H8 TCGA-EL-A3MY 
      102.84        37.25       147.75        33.47       131.15        17.49 
TCGA-EM-A1CU TCGA-EM-A1CV TCGA-EM-A1YE TCGA-EM-A22M TCGA-EM-A22Q TCGA-EM-A2CN 
       20.91        12.36        54.08        14.50        14.20        23.51 
TCGA-EM-A2CP TCGA-EM-A2CR TCGA-EM-A2CS TCGA-EM-A3AI TCGA-EM-A3AO TCGA-EM-A3FJ 
        2.96        13.64        15.16        17.46        13.38        27.95 
TCGA-EM-A3FN TCGA-EM-A3FO TCGA-ET-A2MZ TCGA-ET-A2N1 TCGA-ET-A2N4 TCGA-ET-A39J 
       12.07        17.49        12.26        29.19         2.66        71.01 
TCGA-ET-A39L TCGA-ET-A39M TCGA-ET-A39N TCGA-ET-A39R TCGA-ET-A3BN TCGA-ET-A3BS 
       65.33        84.89        98.56        57.11        28.24         5.52 
TCGA-ET-A3BU TCGA-ET-A3BV TCGA-ET-A3BW TCGA-ET-A3BX TCGA-ET-A3DS TCGA-ET-A3DT 
       38.30        42.21         2.37         4.50         0.30        17.98 
TCGA-ET-A3DV TCGA-FE-A233 TCGA-FE-A235 TCGA-FE-A239 TCGA-FY-A3ON TCGA-GE-A2C6 
      132.36        24.69       102.90        33.63         1.51        12.53 
TCGA-H2-A2K9 TCGA-IM-A3ED 
       11.31        47.41 

subtype1 subtype2 subtype3 
    0.99     0.23     0.10 
subtype1 subtype2 subtype3 
  158.83   147.42   147.75 
subtype1 subtype2 subtype3 
   16.39    21.81    14.50 
[1] "1.0 - 158.8 (16.4)" "0.2 - 147.4 (21.8)" "0.1 - 147.8 (14.5)"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [25] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [31] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [37] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [49] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [55] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [61] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [67] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [73] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [85] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [91] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [97] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[109] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[121] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[127] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[133] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[139] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[145] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[151] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[169] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[175] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[187] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[193] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[199] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[205] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [25] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [31] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [37] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [49] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [55] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [61] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [67] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [73] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [85] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [91] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [97] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[109] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[121] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[127] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[133] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[139] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[145] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[151] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[169] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[175] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[187] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[193] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[199] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[205] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [25] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [31] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [37] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [49] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [55] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [61] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [67] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [73] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [85] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [91] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [97] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[109] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[121] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[127] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[133] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[139] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[145] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[151] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[169] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[175] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[187] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[193] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[199] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[205] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
D3V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IVA STAGE IVC
  subtype1      30       11        14         2         1
  subtype2      29       13        21        13         0
  subtype3      52        8        10         3         2
D3V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 22 22 15  0
  subtype2 13 24 31  8
  subtype3 15 34 25  1
D3V4, multiclass
D3V5, binary
          cls
clus        0  1
  subtype1 33 18
  subtype2 27 40
  subtype3 32 32
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   33   18
  subtype2   27   40
  subtype3   32   32
   clus
vv  subtype1 subtype2 subtype3
  0       33       27       32
  1       18       40       32
          vv
clus       M0 M1 MX
  subtype1 37  1 21
  subtype2 40  1 35
  subtype3 32  2 41
D3V6, multiclass
D3V7, binary
          cls
clus        0  1
  subtype1 42 18
  subtype2 55 21
  subtype3 50 25
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   42   18
  subtype2   55   21
  subtype3   50   25
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       42       55       50
  MALE         18       21       25
          vv
clus       OTHER  SPECIFY THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL
  subtype1              0                                            34
  subtype2              1                                            52
  subtype3              1                                            61
          vv
clus       THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED)
  subtype1                                                                     25
  subtype2                                                                     14
  subtype3                                                                     13
          vv
clus       THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES)
  subtype1                                                                   1
  subtype2                                                                   9
  subtype3                                                                   0
D3V8, multiclass
D3V9, binary
          cls
clus        0  1
  subtype1  0 60
  subtype2  9 67
  subtype3  4 71
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0   60
  subtype2    9   67
  subtype3    4   71
     clus
vv    subtype1 subtype2 subtype3
  NO         0        9        4
  YES       60       67       71
D3V10, binary
          cls
clus        0  1
  subtype1 52  3
  subtype2 64  4
  subtype3 60  4
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   52    3
  subtype2   64    4
  subtype3   60    4
     clus
vv    subtype1 subtype2 subtype3
  NO        52       64       60
  YES        3        4        4
          vv
clus       MINIMAL (T3) MODERATE/ADVANCED (T4A) NONE
  subtype1           13                       0   47
  subtype2           26                       8   40
  subtype3           14                       1   56
D3V11, multiclass
          vv
clus       R0 R1 R2 RX
  subtype1 47  6  1  5
  subtype2 57 11  0  4
  subtype3 59  3  0  4
D3V12, multiclass
D3V13, continuous
D3V14, binary
          cls
clus        0  1
  subtype1 35 22
  subtype2 25 49
  subtype3 37 36
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   35   22
  subtype2   25   49
  subtype3   37   36
            clus
vv           subtype1 subtype2 subtype3
  MULTIFOCAL       35       25       37
  UNIFOCAL         22       49       36
D3V15, continuous

Clustering(4) Variable = RPPA_CHIERARCHICAL
D4V1, survival
          sevent
clus2       0  1
  subtype1 26  4
  subtype2 86  2
  subtype3 86  6
subtype1 subtype2 subtype3 
      30       88       92 
subtype1 subtype2 subtype3 
       4        2        6 
$subtype1
TCGA-BJ-A192 TCGA-DJ-A13R TCGA-DJ-A13S TCGA-DJ-A1QG TCGA-DJ-A2PP TCGA-DJ-A2Q0 
        8.09         3.02         8.71         6.97         5.00         8.12 
TCGA-DJ-A2QB TCGA-E3-A3DY TCGA-EL-A3CM TCGA-EL-A3CS TCGA-EL-A3CT TCGA-EL-A3MZ 
       10.85        31.07        26.73        45.53        60.95        52.47 
TCGA-EL-A3N3 TCGA-EM-A1YA TCGA-EM-A1YB TCGA-EM-A1YC TCGA-EM-A22I TCGA-EM-A22J 
      147.42        19.79        19.46        54.21        14.70        14.47 
TCGA-EM-A2CO TCGA-EM-A2OV TCGA-EM-A2OY TCGA-ET-A25O TCGA-ET-A2MY TCGA-ET-A2N0 
        6.02        22.16        17.59        27.09        22.09        16.08 
TCGA-ET-A39T TCGA-ET-A3BT TCGA-FE-A22Z TCGA-FE-A231 TCGA-FE-A237 TCGA-FY-A3BL 
       59.15        24.72        59.15        31.59        81.34         1.15 

$subtype2
TCGA-BJ-A0Z5 TCGA-BJ-A0Z9 TCGA-BJ-A0ZB TCGA-BJ-A191 TCGA-BJ-A28R TCGA-BJ-A28T 
       14.73         8.25         4.01         4.80         4.87         2.76 
TCGA-BJ-A28Z TCGA-BJ-A290 TCGA-BJ-A2NA TCGA-CE-A13K TCGA-CE-A27D TCGA-CE-A3MD 
        1.22        20.58         2.10         0.53         0.10         0.20 
TCGA-CE-A3ME TCGA-DE-A0Y2 TCGA-DJ-A13V TCGA-DJ-A1QD TCGA-DJ-A1QE TCGA-DJ-A1QF 
        0.23        15.42        11.90        10.98        99.98        18.05 
TCGA-DJ-A1QI TCGA-DJ-A1QN TCGA-DJ-A1QO TCGA-DJ-A2PR TCGA-DJ-A2PU TCGA-DJ-A2PW 
       15.02         8.98         1.02        10.45        10.26         7.69 
TCGA-DJ-A2PY TCGA-DJ-A2Q1 TCGA-DJ-A2Q4 TCGA-DJ-A2Q5 TCGA-DJ-A2Q8 TCGA-DO-A1JZ 
        8.78         9.34         9.44         9.90         7.07        54.90 
TCGA-DO-A1K0 TCGA-E3-A3E0 TCGA-E3-A3E1 TCGA-E3-A3E3 TCGA-E8-A2EA TCGA-EL-A3CR 
       21.53        66.35        40.18        30.28        22.29         7.66 
TCGA-EL-A3CX TCGA-EL-A3CY TCGA-EL-A3D1 TCGA-EL-A3D6 TCGA-EL-A3GP TCGA-EL-A3GR 
       80.91         4.18        74.27       108.36         1.41       102.84 
TCGA-EL-A3GS TCGA-EL-A3GU TCGA-EL-A3GV TCGA-EL-A3GX TCGA-EL-A3GY TCGA-EL-A3H4 
       65.39       124.04        50.37       147.75       101.13        38.66 
TCGA-EL-A3H5 TCGA-EL-A3H7 TCGA-EL-A3H8 TCGA-EL-A3MW TCGA-EL-A3MY TCGA-EL-A3N2 
       52.73       126.97       131.15       108.66        17.49        12.16 
TCGA-EM-A1CU TCGA-EM-A1CV TCGA-EM-A22M TCGA-EM-A22O TCGA-EM-A2CS TCGA-EM-A2P1 
       20.91        12.36        14.50        11.74        15.16        17.46 
TCGA-EM-A3AO TCGA-EM-A3FO TCGA-ET-A25G TCGA-ET-A25L TCGA-ET-A2N4 TCGA-ET-A39J 
       13.38        17.49        47.47        14.79         2.66        71.01 
TCGA-ET-A39M TCGA-ET-A39R TCGA-ET-A3BN TCGA-ET-A3BS TCGA-ET-A3BU TCGA-ET-A3BV 
       84.89        57.11        28.24         5.52        38.30        42.21 
TCGA-ET-A3BW TCGA-ET-A3BX TCGA-ET-A3DO TCGA-ET-A3DT TCGA-ET-A3DW TCGA-FE-A230 
        2.37         4.50        80.81        17.98        24.69        59.70 
TCGA-FE-A233 TCGA-FE-A234 TCGA-FE-A235 TCGA-FE-A23A TCGA-FY-A3ON TCGA-GE-A2C6 
       24.69        68.22       102.90        81.83         1.51        12.53 
TCGA-IM-A3EB TCGA-IM-A3ED TCGA-J8-A3NZ TCGA-J8-A3O1 
       48.92        47.41         2.24        27.19 

$subtype3
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0Z3 TCGA-BJ-A0ZA TCGA-BJ-A0ZC 
       24.79        13.78        18.21        16.34        18.87        11.57 
TCGA-BJ-A0ZE TCGA-BJ-A0ZG TCGA-BJ-A0ZJ TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A28V 
       16.73         7.56        17.69        23.34        20.58         5.10 
TCGA-BJ-A28W TCGA-BJ-A291 TCGA-DE-A2OL TCGA-DE-A3KN TCGA-DJ-A13M TCGA-DJ-A13O 
        1.12        14.50         5.98        15.85         9.01         7.07 
TCGA-DJ-A13W TCGA-DJ-A13X TCGA-DJ-A1QL TCGA-DJ-A1QM TCGA-DJ-A2PN TCGA-DJ-A2PO 
       14.93         7.99         6.97         0.99        10.06         7.96 
TCGA-DJ-A2PQ TCGA-DJ-A2PS TCGA-DJ-A2PV TCGA-DJ-A2PZ TCGA-DJ-A2Q2 TCGA-DJ-A2Q6 
       20.48         1.94         7.96         8.42         6.77         8.61 
TCGA-DJ-A2Q7 TCGA-DJ-A2Q9 TCGA-DJ-A2QA TCGA-DJ-A2QC TCGA-E3-A3DZ TCGA-E3-A3E5 
        9.57        10.36        12.43         9.99        12.07        14.04 
TCGA-EL-A3CL TCGA-EL-A3CN TCGA-EL-A3CO TCGA-EL-A3CP TCGA-EL-A3CU TCGA-EL-A3CV 
       31.63       155.54        97.74       158.83       157.15        37.94 
TCGA-EL-A3CW TCGA-EL-A3CZ TCGA-EL-A3D4 TCGA-EL-A3D5 TCGA-EL-A3GO TCGA-EL-A3GQ 
       57.01        58.78        45.40        33.44        39.32        30.18 
TCGA-EL-A3GW TCGA-EL-A3H1 TCGA-EL-A3H2 TCGA-EM-A1CT TCGA-EM-A1CW TCGA-EM-A1YD 
       37.25        49.32        33.47        18.18        18.05        57.01 
TCGA-EM-A1YE TCGA-EM-A22L TCGA-EM-A22Q TCGA-EM-A2CJ TCGA-EM-A2CK TCGA-EM-A2CL 
       54.08        10.45        14.20        16.44        17.85        13.18 
TCGA-EM-A2CN TCGA-EM-A2CP TCGA-EM-A2CQ TCGA-EM-A2CR TCGA-EM-A2CU TCGA-EM-A3AI 
       23.51         2.96        12.30        13.64        13.12        17.46 
TCGA-EM-A3AJ TCGA-EM-A3AL TCGA-EM-A3AN TCGA-EM-A3AP TCGA-EM-A3FJ TCGA-EM-A3FL 
       18.94        14.14        19.63         8.35        27.95        16.77 
TCGA-EM-A3FN TCGA-EM-A3FP TCGA-ET-A25M TCGA-ET-A2MZ TCGA-ET-A2N1 TCGA-ET-A2N5 
       12.07        17.39        12.33        12.26        29.19        58.22 
TCGA-ET-A39I TCGA-ET-A39L TCGA-ET-A39N TCGA-ET-A39P TCGA-ET-A3BP TCGA-ET-A3DP 
       13.74        65.33        98.56        58.72         4.18        56.88 
TCGA-ET-A3DS TCGA-ET-A3DV TCGA-FE-A232 TCGA-FE-A236 TCGA-FE-A239 TCGA-FY-A2QD 
        0.30       132.36        44.25        66.77        33.63         1.25 
TCGA-H2-A2K9 TCGA-J8-A3O0 
       11.31        43.17 

subtype1 subtype2 subtype3 
    1.15     0.10     0.30 
subtype1 subtype2 subtype3 
  147.42   147.75   158.83 
subtype1 subtype2 subtype3 
  20.940   17.475   16.585 
[1] "1.1 - 147.4 (20.9)" "0.1 - 147.8 (17.5)" "0.3 - 158.8 (16.6)"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
  [7] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [19] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [37] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [43] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [49] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [55] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [61] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [67] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [73] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [85] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[109] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[121] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[127] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[139] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[145] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[163] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[169] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[175] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[193] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[199] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[205] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
  [7] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [19] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [37] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [43] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [49] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [55] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [61] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [67] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [73] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [85] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[109] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[121] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[127] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[139] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[145] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[163] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[169] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[175] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[193] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[199] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[205] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
  [7] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [19] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [37] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [43] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [49] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [55] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [61] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [67] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [73] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [85] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[109] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[121] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[127] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[139] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[145] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[163] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[169] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[175] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[193] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[199] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[205] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
D4V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IVA STAGE IVC
  subtype1       7        9         8         6         0
  subtype2      53        7        20         8         1
  subtype3      51       16        17         4         2
D4V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1  6 11  9  4
  subtype2 15 33 36  4
  subtype3 29 36 26  1
D4V4, multiclass
D4V5, binary
          cls
clus        0  1
  subtype1 12 11
  subtype2 28 52
  subtype3 52 27
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   12   11
  subtype2   28   52
  subtype3   52   27
   clus
vv  subtype1 subtype2 subtype3
  0       12       28       52
  1       11       52       27
          vv
clus       M0 M1 MX
  subtype1 13  0 17
  subtype2 52  2 35
  subtype3 44  2 45
D4V6, multiclass
D4V7, binary
          cls
clus        0  1
  subtype1 23  7
  subtype2 63 26
  subtype3 61 31
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   23    7
  subtype2   63   26
  subtype3   61   31
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       23       63       61
  MALE          7       26       31
          vv
clus       OTHER  SPECIFY THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL
  subtype1              1                                            14
  subtype2              1                                            78
  subtype3              0                                            55
          vv
clus       THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED)
  subtype1                                                                     14
  subtype2                                                                      2
  subtype3                                                                     36
          vv
clus       THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES)
  subtype1                                                                   1
  subtype2                                                                   8
  subtype3                                                                   1
D4V8, multiclass
D4V9, binary
          cls
clus        0  1
  subtype1  3 27
  subtype2  7 82
  subtype3  3 89
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3   27
  subtype2    7   82
  subtype3    3   89
     clus
vv    subtype1 subtype2 subtype3
  NO         3        7        3
  YES       27       82       89
D4V10, binary
          cls
clus        0  1
  subtype1 24  4
  subtype2 72  4
  subtype3 80  3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   24    4
  subtype2   72    4
  subtype3   80    3
     clus
vv    subtype1 subtype2 subtype3
  NO        24       72       80
  YES        4        4        3
          vv
clus       MINIMAL (T3) MODERATE/ADVANCED (T4A) NONE
  subtype1            7                       4   19
  subtype2           30                       5   51
  subtype3           16                       0   73
D4V11, multiclass
          vv
clus       R0 R1 R2 RX
  subtype1 25  2  0  3
  subtype2 68 10  0  3
  subtype3 70  8  1  7
D4V12, multiclass
D4V13, continuous
D4V14, binary
          cls
clus        0  1
  subtype1 10 19
  subtype2 39 47
  subtype3 48 41
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   10   19
  subtype2   39   47
  subtype3   48   41
            clus
vv           subtype1 subtype2 subtype3
  MULTIFOCAL       10       39       48
  UNIFOCAL         19       47       41
D4V15, continuous

Clustering(5) Variable = MRNASEQ_CNMF
D5V1, survival
          sevent
clus2        0   1
  subtype1 140   3
  subtype2  48   2
  subtype3 109   1
  subtype4 148   7
subtype1 subtype2 subtype3 subtype4 
     143       50      110      155 
subtype1 subtype2 subtype3 subtype4 
       3        2        1        7 
$subtype1
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0ZA TCGA-BJ-A0ZC TCGA-BJ-A0ZE 
       24.79        13.78        18.21        18.87        11.57        16.73 
TCGA-BJ-A0ZG TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A191 TCGA-BJ-A192 TCGA-BJ-A28V 
        7.56        23.34        20.58         4.80         8.09         5.10 
TCGA-BJ-A291 TCGA-BJ-A3PT TCGA-BJ-A45C TCGA-BJ-A45D TCGA-BJ-A45F TCGA-BJ-A45G 
       14.50        12.07         5.72         6.48         3.45         6.35 
TCGA-BJ-A45K TCGA-CE-A484 TCGA-DE-A2OL TCGA-DE-A4M9 TCGA-DJ-A13M TCGA-DJ-A13R 
        8.98         0.39         5.98         4.87         9.01         3.02 
TCGA-DJ-A13S TCGA-DJ-A13W TCGA-DJ-A1QG TCGA-DJ-A1QL TCGA-DJ-A1QM TCGA-DJ-A2PP 
        8.71        14.93         6.97         6.97         0.99         5.00 
TCGA-DJ-A2Q0 TCGA-DJ-A2Q2 TCGA-DJ-A2QB TCGA-DJ-A3UP TCGA-DJ-A3US TCGA-DJ-A3UT 
        8.12         6.77        10.85         5.49        20.71        15.42 
TCGA-DJ-A3UZ TCGA-DJ-A3V4 TCGA-DJ-A3VG TCGA-DJ-A3VL TCGA-DJ-A3VM TCGA-DJ-A4UR 
       12.76        14.56         8.32        17.19        15.81        10.98 
TCGA-DJ-A4V0 TCGA-E3-A3DZ TCGA-E8-A415 TCGA-E8-A416 TCGA-E8-A434 TCGA-EL-A3CX 
        9.34        12.07         0.16         0.72         0.23        80.91 
TCGA-EL-A3CZ TCGA-EL-A3D5 TCGA-EL-A3GO TCGA-EL-A3GW TCGA-EL-A3H1 TCGA-EL-A3H2 
       58.78        33.44        39.32        37.25        49.32        33.47 
TCGA-EL-A3T0 TCGA-EL-A3T2 TCGA-EL-A3ZH TCGA-EL-A3ZR TCGA-EL-A4JV TCGA-EL-A4K2 
      130.72        32.48        78.97        48.16        45.80        19.53 
TCGA-EL-A4K6 TCGA-EL-A4KD TCGA-EL-A4KI TCGA-EM-A1CW TCGA-EM-A1YA TCGA-EM-A1YB 
       28.73        29.95         8.68        18.05        19.79        19.46 
TCGA-EM-A1YC TCGA-EM-A1YD TCGA-EM-A1YE TCGA-EM-A22J TCGA-EM-A22K TCGA-EM-A22L 
       54.21        57.01        54.08        14.47        15.72        10.45 
TCGA-EM-A22N TCGA-EM-A22Q TCGA-EM-A2CJ TCGA-EM-A2CK TCGA-EM-A2CL TCGA-EM-A2CN 
       10.65        14.20        16.44        17.85        13.18        23.51 
TCGA-EM-A2CO TCGA-EM-A2CP TCGA-EM-A2CQ TCGA-EM-A2CR TCGA-EM-A2CT TCGA-EM-A2OV 
        6.02         2.96        12.30        13.64        10.49        22.16 
TCGA-EM-A2OW TCGA-EM-A2OY TCGA-EM-A2P2 TCGA-EM-A3AI TCGA-EM-A3AJ TCGA-EM-A3AL 
       13.84        17.59        17.29        17.46        18.94        14.14 
TCGA-EM-A3AP TCGA-EM-A3AR TCGA-EM-A3FL TCGA-EM-A3FN TCGA-EM-A3FP TCGA-EM-A3FR 
        8.35        16.77        16.77        12.07        17.39        15.02 
TCGA-EM-A3O6 TCGA-EM-A3O8 TCGA-EM-A3O9 TCGA-EM-A3OA TCGA-EM-A3OB TCGA-EM-A3ST 
       11.15        12.53         9.24        13.91         7.82        11.51 
TCGA-EM-A3SY TCGA-EM-A4FH TCGA-EM-A4FK TCGA-EM-A4FR TCGA-EM-A4FU TCGA-EM-A4G1 
       13.51        16.90         8.98         5.03        37.87         0.95 
TCGA-ET-A25I TCGA-ET-A25P TCGA-ET-A2N3 TCGA-ET-A2N5 TCGA-ET-A39I TCGA-ET-A39L 
       48.20        18.35        19.76        58.22        13.74        65.33 
TCGA-ET-A39N TCGA-ET-A39S TCGA-ET-A3DQ TCGA-ET-A3DR TCGA-ET-A3DS TCGA-ET-A3DV 
       98.56        55.10        59.87        43.50         0.30       132.36 
TCGA-ET-A40P TCGA-ET-A4KQ TCGA-FE-A239 TCGA-FK-A3SD TCGA-FY-A2QD TCGA-FY-A3I5 
        3.22         1.94        33.63         0.89         1.25         1.64 
TCGA-FY-A3NM TCGA-FY-A3NP TCGA-FY-A3R7 TCGA-FY-A3R9 TCGA-FY-A3W9 TCGA-FY-A3WA 
        0.99        16.14         0.03        16.57         0.76         0.95 
TCGA-FY-A40M TCGA-FY-A40N TCGA-H2-A2K9 TCGA-H2-A3RH TCGA-IM-A41Z TCGA-J8-A3O0 
        4.54         0.89        11.31        12.46         9.63        43.17 
TCGA-J8-A3YD TCGA-J8-A4HY TCGA-KS-A41I TCGA-KS-A41L TCGA-KS-A4ID 
       31.82         0.20        15.95        86.70        20.48 

$subtype2
TCGA-BJ-A0Z3 TCGA-BJ-A0ZJ TCGA-BJ-A28T TCGA-BJ-A28X TCGA-BJ-A28Z TCGA-BJ-A3PR 
       16.34        17.69         2.76        17.49         1.22         8.02 
TCGA-CE-A27D TCGA-CE-A481 TCGA-CE-A485 TCGA-DJ-A13O TCGA-DJ-A2PX TCGA-DJ-A2Q1 
        0.10         0.10         0.10         7.07         5.03         9.34 
TCGA-DJ-A2Q3 TCGA-DJ-A2Q9 TCGA-DJ-A3UW TCGA-DJ-A3UX TCGA-DJ-A3VD TCGA-DJ-A4UT 
        9.21        10.36        43.00        11.34        11.51        12.20 
TCGA-DJ-A4UW TCGA-DO-A2HM TCGA-E8-A2EA TCGA-E8-A413 TCGA-E8-A414 TCGA-E8-A44M 
        9.44         2.30        22.29         0.33         0.23         0.39 
TCGA-EL-A3CO TCGA-EL-A3CU TCGA-EL-A3CV TCGA-EL-A3CW TCGA-EL-A3CY TCGA-EL-A3GP 
       97.74       157.15        37.94        57.01         4.18         1.41 
TCGA-EL-A3H5 TCGA-EL-A3TA TCGA-EL-A3ZP TCGA-EL-A3ZS TCGA-EL-A4JZ TCGA-EM-A22P 
       52.73        66.90        52.50         7.04        37.94        11.15 
TCGA-EM-A2P1 TCGA-EM-A3FQ TCGA-EM-A3O3 TCGA-EM-A4FO TCGA-ET-A39R TCGA-ET-A3BO 
       17.46        16.18        14.50         8.35        57.11         5.82 
TCGA-ET-A3DT TCGA-ET-A40R TCGA-ET-A40S TCGA-FE-A3PB TCGA-FY-A3R6 TCGA-GE-A2C6 
       17.98         4.80         5.00        85.12         0.76        12.53 
TCGA-H2-A26U TCGA-J8-A3O2 
       10.98         1.35 

$subtype3
TCGA-BJ-A0Z5 TCGA-BJ-A290 TCGA-BJ-A45H TCGA-BJ-A45J TCGA-BJ-A4O9 TCGA-CE-A13K 
       14.73        20.58         7.79         5.06         5.95         0.53 
TCGA-CE-A3MD TCGA-CE-A482 TCGA-DE-A0XZ TCGA-DE-A3KN TCGA-DJ-A13P TCGA-DJ-A13T 
        0.20         0.07        20.22        15.85       138.05        24.92 
TCGA-DJ-A13V TCGA-DJ-A13X TCGA-DJ-A1QF TCGA-DJ-A1QI TCGA-DJ-A1QN TCGA-DJ-A2PO 
       11.90         7.99        18.05        15.02         8.98         7.96 
TCGA-DJ-A2PQ TCGA-DJ-A2PR TCGA-DJ-A2PS TCGA-DJ-A2PU TCGA-DJ-A2PV TCGA-DJ-A2Q5 
       20.48        10.45         1.94        10.26         7.96         9.90 
TCGA-DJ-A2Q6 TCGA-DJ-A2Q7 TCGA-DJ-A2QA TCGA-DJ-A2QC TCGA-DJ-A3UK TCGA-DJ-A3UN 
        8.61         9.57        12.43         9.99         8.25        12.49 
TCGA-DJ-A3UO TCGA-DJ-A3UR TCGA-DJ-A3UU TCGA-DJ-A3V2 TCGA-DJ-A3V3 TCGA-DJ-A3V9 
       15.78        23.70        17.69         7.40        17.75         7.13 
TCGA-DJ-A3VA TCGA-DJ-A3VE TCGA-DJ-A4UL TCGA-DO-A1JZ TCGA-E3-A3DY TCGA-E3-A3E0 
       11.93         4.41        11.93        54.90        31.07        66.35 
TCGA-E3-A3E2 TCGA-E3-A3E5 TCGA-E8-A432 TCGA-E8-A438 TCGA-EL-A3CL TCGA-EL-A3CP 
       63.16        14.04         0.53         6.90        31.63       158.83 
TCGA-EL-A3GQ TCGA-EL-A3GV TCGA-EL-A3MW TCGA-EL-A3T7 TCGA-EL-A3T8 TCGA-EL-A3TB 
       30.18        50.37       108.66        41.29        95.38        82.82 
TCGA-EL-A3ZG TCGA-EL-A3ZL TCGA-EL-A3ZQ TCGA-EL-A4K0 TCGA-EL-A4K7 TCGA-EL-A4K9 
       77.33        50.30        45.53        19.00        41.13        37.78 
TCGA-EL-A4KH TCGA-EM-A1CS TCGA-EM-A1CV TCGA-EM-A2CS TCGA-EM-A2CU TCGA-EM-A2OX 
       11.87        26.86        12.36        15.16        13.12        19.73 
TCGA-EM-A3AK TCGA-EM-A3AN TCGA-EM-A3AO TCGA-EM-A3AQ TCGA-EM-A3FJ TCGA-EM-A3O7 
       15.68        19.63        13.38        16.44        27.95         7.33 
TCGA-EM-A3SX TCGA-EM-A4FV TCGA-ET-A25K TCGA-ET-A25O TCGA-ET-A2MZ TCGA-ET-A2N4 
       15.62        12.72        32.35        27.09        12.26         2.66 
TCGA-ET-A39J TCGA-ET-A39K TCGA-ET-A39M TCGA-ET-A3BP TCGA-ET-A3BQ TCGA-ET-A3BS 
       71.01        72.49        84.89         4.18         2.43         5.52 
TCGA-ET-A3BW TCGA-ET-A3DP TCGA-ET-A40T TCGA-FE-A235 TCGA-FE-A3PA TCGA-FE-A3PC 
        2.37        56.88         2.10       102.90        94.42        85.64 
TCGA-FE-A3PD TCGA-FK-A3S3 TCGA-FK-A3SB TCGA-FK-A3SG TCGA-FK-A3SH TCGA-FK-A4UB 
       78.77        46.06         4.08         0.92        48.10        91.13 
TCGA-FY-A40K TCGA-H2-A3RI TCGA-J8-A3YH TCGA-J8-A42S TCGA-KS-A41F TCGA-KS-A4I1 
        4.14         2.96         5.72         2.47       120.99         5.98 
TCGA-KS-A4I5 TCGA-KS-A4I7 TCGA-KS-A4IB TCGA-KS-A4IC TCGA-L6-A4EQ TCGA-L6-A4ET 
        6.71        12.36        64.54        14.70        11.87         1.12 
TCGA-MK-A4N7 TCGA-MK-A4N9 
       14.47         8.71 

$subtype4
TCGA-BJ-A0Z9 TCGA-BJ-A0ZB TCGA-BJ-A0ZH TCGA-BJ-A28R TCGA-BJ-A2NA TCGA-BJ-A3PU 
        8.25         4.01        15.12         4.87         2.10        10.03 
TCGA-BJ-A45I TCGA-BJ-A4O8 TCGA-CE-A3ME TCGA-CE-A483 TCGA-DE-A0Y2 TCGA-DE-A0Y3 
        6.15         4.93         0.23         0.10        15.42        36.46 
TCGA-DE-A4MC TCGA-DE-A4MD TCGA-DJ-A13U TCGA-DJ-A1QD TCGA-DJ-A1QE TCGA-DJ-A1QH 
       17.39        12.00        12.92        10.98        99.98         7.99 
TCGA-DJ-A1QO TCGA-DJ-A1QQ TCGA-DJ-A2PN TCGA-DJ-A2PT TCGA-DJ-A2PW TCGA-DJ-A2PY 
        1.02         5.95        10.06         9.60         7.69         8.78 
TCGA-DJ-A2PZ TCGA-DJ-A2Q4 TCGA-DJ-A3UM TCGA-DJ-A3UQ TCGA-DJ-A3UY TCGA-DJ-A3V0 
        8.42         9.44        17.23         9.11        13.32        25.02 
TCGA-DJ-A3V5 TCGA-DJ-A3V7 TCGA-DJ-A3V8 TCGA-DJ-A3VB TCGA-DJ-A3VF TCGA-DJ-A3VJ 
        7.86         9.83         8.52        11.21         7.73        17.36 
TCGA-DJ-A4UQ TCGA-DJ-A4V2 TCGA-DJ-A4V4 TCGA-DJ-A4V5 TCGA-DO-A1K0 TCGA-E3-A3E1 
       10.78         3.09         3.35        16.14        21.53        40.18 
TCGA-E3-A3E3 TCGA-E8-A242 TCGA-E8-A3X7 TCGA-E8-A417 TCGA-E8-A418 TCGA-E8-A433 
       30.28         1.12         1.48         0.26         1.48         0.16 
TCGA-E8-A436 TCGA-E8-A437 TCGA-E8-A44K TCGA-EL-A3CM TCGA-EL-A3CN TCGA-EL-A3CR 
        1.15         7.69         0.39        26.73       155.54         7.66 
TCGA-EL-A3CS TCGA-EL-A3CT TCGA-EL-A3D6 TCGA-EL-A3GR TCGA-EL-A3GS TCGA-EL-A3GU 
       45.53        60.95       108.36       102.84        65.39       124.04 
TCGA-EL-A3GX TCGA-EL-A3GY TCGA-EL-A3H4 TCGA-EL-A3H7 TCGA-EL-A3H8 TCGA-EL-A3MY 
      147.75       101.13        38.66       126.97       131.15        17.49 
TCGA-EL-A3MZ TCGA-EL-A3N2 TCGA-EL-A3N3 TCGA-EL-A3T1 TCGA-EL-A3T3 TCGA-EL-A3T6 
       52.47        12.16       147.42       129.57       116.91        98.20 
TCGA-EL-A3T9 TCGA-EL-A3ZK TCGA-EL-A3ZT TCGA-EL-A4JW TCGA-EL-A4JX TCGA-EL-A4K1 
        5.72        31.46        44.61        19.27        45.96        19.59 
TCGA-EL-A4K4 TCGA-EL-A4KG TCGA-EM-A1CT TCGA-EM-A1CU TCGA-EM-A22I TCGA-EM-A22O 
       33.60        13.32        18.18        20.91        14.70        11.74 
TCGA-EM-A2OZ TCGA-EM-A2P0 TCGA-EM-A2P3 TCGA-EM-A3FK TCGA-EM-A3FM TCGA-EM-A3FO 
       12.07        17.59        14.60        23.77        21.01        17.49 
TCGA-EM-A3SU TCGA-EM-A3SZ TCGA-EM-A4FF TCGA-EM-A4FM TCGA-EM-A4FN TCGA-EM-A4FQ 
       16.41        12.79        70.62         4.80         8.58         9.80 
TCGA-ET-A25G TCGA-ET-A25J TCGA-ET-A25L TCGA-ET-A25M TCGA-ET-A25N TCGA-ET-A25R 
       47.47        29.69        14.79        12.33        14.79        20.42 
TCGA-ET-A2MX TCGA-ET-A2MY TCGA-ET-A2N0 TCGA-ET-A39O TCGA-ET-A39P TCGA-ET-A39T 
       54.02        22.09        16.08        61.02        58.72        59.15 
TCGA-ET-A3BN TCGA-ET-A3BT TCGA-ET-A3BU TCGA-ET-A3BX TCGA-ET-A3DO TCGA-ET-A3DW 
       28.24        24.72        38.30         4.50        80.81        24.69 
TCGA-ET-A40Q TCGA-ET-A4KN TCGA-FE-A22Z TCGA-FE-A230 TCGA-FE-A231 TCGA-FE-A233 
        7.17         4.01        59.15        59.70        31.59        24.69 
TCGA-FE-A234 TCGA-FE-A236 TCGA-FE-A237 TCGA-FE-A238 TCGA-FE-A23A TCGA-FK-A3SE 
       68.22        66.77        81.34        39.95        81.83        21.99 
TCGA-FY-A3BL TCGA-FY-A3I4 TCGA-FY-A3ON TCGA-FY-A3R8 TCGA-FY-A3RA TCGA-FY-A3YR 
        1.15         1.12         1.51         4.64        18.08         6.84 
TCGA-FY-A40L TCGA-FY-A4B3 TCGA-FY-A4B4 TCGA-H2-A421 TCGA-H2-A422 TCGA-IM-A3EB 
        6.54         1.35         1.15         2.20         2.89        48.92 
TCGA-IM-A3ED TCGA-IM-A3U2 TCGA-IM-A3U3 TCGA-IM-A41Y TCGA-IM-A420 TCGA-IM-A4EB 
       47.41        10.26        16.87         9.80         2.96         8.65 
TCGA-J8-A3NZ TCGA-J8-A3O1 TCGA-J8-A3YE TCGA-J8-A3YF TCGA-J8-A3YG TCGA-J8-A4HW 
        2.24        27.19        27.81        24.69        22.29         2.60 
TCGA-KS-A41J TCGA-KS-A4I3 TCGA-KS-A4I9 TCGA-L6-A4EU TCGA-MK-A4N6 
       15.68        12.03        17.42         0.72        16.60 

subtype1 subtype2 subtype3 subtype4 
    0.03     0.10     0.07     0.10 
subtype1 subtype2 subtype3 subtype4 
  132.36   157.15   158.83   155.54 
subtype1 subtype2 subtype3 subtype4 
  13.840   10.670   14.585   15.680 
[1] "0.0 - 132.4 (13.8)" "0.1 - 157.2 (10.7)" "0.1 - 158.8 (14.6)"
[4] "0.1 - 155.5 (15.7)"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype4"
  [7] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype4"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype4"
 [19] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [25] "subtype4" "subtype2" "subtype1" "subtype4" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype3" "subtype4" "subtype3" "subtype1"
 [37] "subtype4" "subtype3" "subtype3" "subtype2" "subtype3" "subtype4"
 [43] "subtype2" "subtype3" "subtype4" "subtype1" "subtype2" "subtype3"
 [49] "subtype4" "subtype4" "subtype1" "subtype3" "subtype1" "subtype4"
 [55] "subtype4" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype4" "subtype3" "subtype1" "subtype3" "subtype4"
 [67] "subtype4" "subtype3" "subtype1" "subtype4" "subtype3" "subtype1"
 [73] "subtype1" "subtype3" "subtype4" "subtype4" "subtype4" "subtype3"
 [79] "subtype1" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
 [85] "subtype3" "subtype4" "subtype2" "subtype4" "subtype4" "subtype1"
 [91] "subtype2" "subtype1" "subtype2" "subtype4" "subtype3" "subtype3"
 [97] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[103] "subtype4" "subtype3" "subtype3" "subtype1" "subtype4" "subtype3"
[109] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype4"
[115] "subtype1" "subtype4" "subtype3" "subtype3" "subtype1" "subtype4"
[121] "subtype4" "subtype4" "subtype3" "subtype3" "subtype4" "subtype2"
[127] "subtype3" "subtype4" "subtype1" "subtype4" "subtype1" "subtype1"
[133] "subtype3" "subtype4" "subtype1" "subtype2" "subtype2" "subtype1"
[139] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype2"
[145] "subtype3" "subtype1" "subtype3" "subtype4" "subtype3" "subtype4"
[151] "subtype3" "subtype4" "subtype2" "subtype4" "subtype2" "subtype2"
[157] "subtype1" "subtype1" "subtype4" "subtype4" "subtype3" "subtype4"
[163] "subtype1" "subtype4" "subtype4" "subtype3" "subtype4" "subtype2"
[169] "subtype3" "subtype4" "subtype4" "subtype2" "subtype3" "subtype4"
[175] "subtype4" "subtype4" "subtype2" "subtype2" "subtype2" "subtype1"
[181] "subtype2" "subtype1" "subtype1" "subtype4" "subtype1" "subtype2"
[187] "subtype3" "subtype4" "subtype4" "subtype4" "subtype3" "subtype1"
[193] "subtype4" "subtype4" "subtype1" "subtype1" "subtype4" "subtype2"
[199] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype4"
[205] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype4"
[211] "subtype3" "subtype3" "subtype4" "subtype2" "subtype3" "subtype3"
[217] "subtype1" "subtype4" "subtype3" "subtype2" "subtype3" "subtype1"
[223] "subtype2" "subtype4" "subtype1" "subtype4" "subtype4" "subtype2"
[229] "subtype3" "subtype4" "subtype1" "subtype4" "subtype1" "subtype3"
[235] "subtype3" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
[241] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[247] "subtype1" "subtype1" "subtype1" "subtype4" "subtype1" "subtype1"
[253] "subtype1" "subtype1" "subtype4" "subtype2" "subtype1" "subtype1"
[259] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[265] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[271] "subtype3" "subtype1" "subtype4" "subtype4" "subtype2" "subtype1"
[277] "subtype4" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[283] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype4"
[289] "subtype1" "subtype4" "subtype1" "subtype4" "subtype1" "subtype2"
[295] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[301] "subtype1" "subtype1" "subtype1" "subtype4" "subtype3" "subtype1"
[307] "subtype4" "subtype4" "subtype1" "subtype1" "subtype4" "subtype4"
[313] "subtype2" "subtype4" "subtype1" "subtype1" "subtype3" "subtype1"
[319] "subtype4" "subtype1" "subtype4" "subtype3" "subtype4" "subtype4"
[325] "subtype4" "subtype3" "subtype1" "subtype4" "subtype4" "subtype4"
[331] "subtype3" "subtype4" "subtype1" "subtype3" "subtype1" "subtype1"
[337] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype4"
[343] "subtype4" "subtype2" "subtype1" "subtype4" "subtype4" "subtype2"
[349] "subtype3" "subtype3" "subtype3" "subtype4" "subtype4" "subtype3"
[355] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[361] "subtype2" "subtype1" "subtype4" "subtype1" "subtype4" "subtype2"
[367] "subtype2" "subtype3" "subtype4" "subtype1" "subtype4" "subtype4"
[373] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype4"
[379] "subtype4" "subtype1" "subtype4" "subtype3" "subtype2" "subtype3"
[385] "subtype3" "subtype3" "subtype3" "subtype1" "subtype4" "subtype3"
[391] "subtype3" "subtype3" "subtype1" "subtype4" "subtype4" "subtype1"
[397] "subtype1" "subtype1" "subtype4" "subtype2" "subtype1" "subtype4"
[403] "subtype1" "subtype4" "subtype1" "subtype1" "subtype4" "subtype3"
[409] "subtype4" "subtype1" "subtype1" "subtype4" "subtype4" "subtype2"
[415] "subtype2" "subtype1" "subtype1" "subtype3" "subtype4" "subtype4"
[421] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype1"
[427] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype2"
[433] "subtype1" "subtype4" "subtype4" "subtype4" "subtype3" "subtype3"
[439] "subtype4" "subtype1" "subtype3" "subtype1" "subtype4" "subtype1"
[445] "subtype3" "subtype4" "subtype3" "subtype3" "subtype4" "subtype3"
[451] "subtype3" "subtype1" "subtype3" "subtype3" "subtype4" "subtype4"
[457] "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype4"
  [7] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype4"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype4"
 [19] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [25] "subtype4" "subtype2" "subtype1" "subtype4" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype3" "subtype4" "subtype3" "subtype1"
 [37] "subtype4" "subtype3" "subtype3" "subtype2" "subtype3" "subtype4"
 [43] "subtype2" "subtype3" "subtype4" "subtype1" "subtype2" "subtype3"
 [49] "subtype4" "subtype4" "subtype1" "subtype3" "subtype1" "subtype4"
 [55] "subtype4" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype4" "subtype3" "subtype1" "subtype3" "subtype4"
 [67] "subtype4" "subtype3" "subtype1" "subtype4" "subtype3" "subtype1"
 [73] "subtype1" "subtype3" "subtype4" "subtype4" "subtype4" "subtype3"
 [79] "subtype1" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
 [85] "subtype3" "subtype4" "subtype2" "subtype4" "subtype4" "subtype1"
 [91] "subtype2" "subtype1" "subtype2" "subtype4" "subtype3" "subtype3"
 [97] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[103] "subtype4" "subtype3" "subtype3" "subtype1" "subtype4" "subtype3"
[109] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype4"
[115] "subtype1" "subtype4" "subtype3" "subtype3" "subtype1" "subtype4"
[121] "subtype4" "subtype4" "subtype3" "subtype3" "subtype4" "subtype2"
[127] "subtype3" "subtype4" "subtype1" "subtype4" "subtype1" "subtype1"
[133] "subtype3" "subtype4" "subtype1" "subtype2" "subtype2" "subtype1"
[139] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype2"
[145] "subtype3" "subtype1" "subtype3" "subtype4" "subtype3" "subtype4"
[151] "subtype3" "subtype4" "subtype2" "subtype4" "subtype2" "subtype2"
[157] "subtype1" "subtype1" "subtype4" "subtype4" "subtype3" "subtype4"
[163] "subtype1" "subtype4" "subtype4" "subtype3" "subtype4" "subtype2"
[169] "subtype3" "subtype4" "subtype4" "subtype2" "subtype3" "subtype4"
[175] "subtype4" "subtype4" "subtype2" "subtype2" "subtype2" "subtype1"
[181] "subtype2" "subtype1" "subtype1" "subtype4" "subtype1" "subtype2"
[187] "subtype3" "subtype4" "subtype4" "subtype4" "subtype3" "subtype1"
[193] "subtype4" "subtype4" "subtype1" "subtype1" "subtype4" "subtype2"
[199] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype4"
[205] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype4"
[211] "subtype3" "subtype3" "subtype4" "subtype2" "subtype3" "subtype3"
[217] "subtype1" "subtype4" "subtype3" "subtype2" "subtype3" "subtype1"
[223] "subtype2" "subtype4" "subtype1" "subtype4" "subtype4" "subtype2"
[229] "subtype3" "subtype4" "subtype1" "subtype4" "subtype1" "subtype3"
[235] "subtype3" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
[241] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[247] "subtype1" "subtype1" "subtype1" "subtype4" "subtype1" "subtype1"
[253] "subtype1" "subtype1" "subtype4" "subtype2" "subtype1" "subtype1"
[259] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[265] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[271] "subtype3" "subtype1" "subtype4" "subtype4" "subtype2" "subtype1"
[277] "subtype4" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[283] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype4"
[289] "subtype1" "subtype4" "subtype1" "subtype4" "subtype1" "subtype2"
[295] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[301] "subtype1" "subtype1" "subtype1" "subtype4" "subtype3" "subtype1"
[307] "subtype4" "subtype4" "subtype1" "subtype1" "subtype4" "subtype4"
[313] "subtype2" "subtype4" "subtype1" "subtype1" "subtype3" "subtype1"
[319] "subtype4" "subtype1" "subtype4" "subtype3" "subtype4" "subtype4"
[325] "subtype4" "subtype3" "subtype1" "subtype4" "subtype4" "subtype4"
[331] "subtype3" "subtype4" "subtype1" "subtype3" "subtype1" "subtype1"
[337] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype4"
[343] "subtype4" "subtype2" "subtype1" "subtype4" "subtype4" "subtype2"
[349] "subtype3" "subtype3" "subtype3" "subtype4" "subtype4" "subtype3"
[355] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[361] "subtype2" "subtype1" "subtype4" "subtype1" "subtype4" "subtype2"
[367] "subtype2" "subtype3" "subtype4" "subtype1" "subtype4" "subtype4"
[373] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype4"
[379] "subtype4" "subtype1" "subtype4" "subtype3" "subtype2" "subtype3"
[385] "subtype3" "subtype3" "subtype3" "subtype1" "subtype4" "subtype3"
[391] "subtype3" "subtype3" "subtype1" "subtype4" "subtype4" "subtype1"
[397] "subtype1" "subtype1" "subtype4" "subtype2" "subtype1" "subtype4"
[403] "subtype1" "subtype4" "subtype1" "subtype1" "subtype4" "subtype3"
[409] "subtype4" "subtype1" "subtype1" "subtype4" "subtype4" "subtype2"
[415] "subtype2" "subtype1" "subtype1" "subtype3" "subtype4" "subtype4"
[421] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype1"
[427] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype2"
[433] "subtype1" "subtype4" "subtype4" "subtype4" "subtype3" "subtype3"
[439] "subtype4" "subtype1" "subtype3" "subtype1" "subtype4" "subtype1"
[445] "subtype3" "subtype4" "subtype3" "subtype3" "subtype4" "subtype3"
[451] "subtype3" "subtype1" "subtype3" "subtype3" "subtype4" "subtype4"
[457] "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype4"
  [7] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype4"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype4"
 [19] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [25] "subtype4" "subtype2" "subtype1" "subtype4" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype3" "subtype4" "subtype3" "subtype1"
 [37] "subtype4" "subtype3" "subtype3" "subtype2" "subtype3" "subtype4"
 [43] "subtype2" "subtype3" "subtype4" "subtype1" "subtype2" "subtype3"
 [49] "subtype4" "subtype4" "subtype1" "subtype3" "subtype1" "subtype4"
 [55] "subtype4" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype4" "subtype3" "subtype1" "subtype3" "subtype4"
 [67] "subtype4" "subtype3" "subtype1" "subtype4" "subtype3" "subtype1"
 [73] "subtype1" "subtype3" "subtype4" "subtype4" "subtype4" "subtype3"
 [79] "subtype1" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
 [85] "subtype3" "subtype4" "subtype2" "subtype4" "subtype4" "subtype1"
 [91] "subtype2" "subtype1" "subtype2" "subtype4" "subtype3" "subtype3"
 [97] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[103] "subtype4" "subtype3" "subtype3" "subtype1" "subtype4" "subtype3"
[109] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype4"
[115] "subtype1" "subtype4" "subtype3" "subtype3" "subtype1" "subtype4"
[121] "subtype4" "subtype4" "subtype3" "subtype3" "subtype4" "subtype2"
[127] "subtype3" "subtype4" "subtype1" "subtype4" "subtype1" "subtype1"
[133] "subtype3" "subtype4" "subtype1" "subtype2" "subtype2" "subtype1"
[139] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype2"
[145] "subtype3" "subtype1" "subtype3" "subtype4" "subtype3" "subtype4"
[151] "subtype3" "subtype4" "subtype2" "subtype4" "subtype2" "subtype2"
[157] "subtype1" "subtype1" "subtype4" "subtype4" "subtype3" "subtype4"
[163] "subtype1" "subtype4" "subtype4" "subtype3" "subtype4" "subtype2"
[169] "subtype3" "subtype4" "subtype4" "subtype2" "subtype3" "subtype4"
[175] "subtype4" "subtype4" "subtype2" "subtype2" "subtype2" "subtype1"
[181] "subtype2" "subtype1" "subtype1" "subtype4" "subtype1" "subtype2"
[187] "subtype3" "subtype4" "subtype4" "subtype4" "subtype3" "subtype1"
[193] "subtype4" "subtype4" "subtype1" "subtype1" "subtype4" "subtype2"
[199] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype4"
[205] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype4"
[211] "subtype3" "subtype3" "subtype4" "subtype2" "subtype3" "subtype3"
[217] "subtype1" "subtype4" "subtype3" "subtype2" "subtype3" "subtype1"
[223] "subtype2" "subtype4" "subtype1" "subtype4" "subtype4" "subtype2"
[229] "subtype3" "subtype4" "subtype1" "subtype4" "subtype1" "subtype3"
[235] "subtype3" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
[241] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[247] "subtype1" "subtype1" "subtype1" "subtype4" "subtype1" "subtype1"
[253] "subtype1" "subtype1" "subtype4" "subtype2" "subtype1" "subtype1"
[259] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[265] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[271] "subtype3" "subtype1" "subtype4" "subtype4" "subtype2" "subtype1"
[277] "subtype4" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[283] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype4"
[289] "subtype1" "subtype4" "subtype1" "subtype4" "subtype1" "subtype2"
[295] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[301] "subtype1" "subtype1" "subtype1" "subtype4" "subtype3" "subtype1"
[307] "subtype4" "subtype4" "subtype1" "subtype1" "subtype4" "subtype4"
[313] "subtype2" "subtype4" "subtype1" "subtype1" "subtype3" "subtype1"
[319] "subtype4" "subtype1" "subtype4" "subtype3" "subtype4" "subtype4"
[325] "subtype4" "subtype3" "subtype1" "subtype4" "subtype4" "subtype4"
[331] "subtype3" "subtype4" "subtype1" "subtype3" "subtype1" "subtype1"
[337] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype4"
[343] "subtype4" "subtype2" "subtype1" "subtype4" "subtype4" "subtype2"
[349] "subtype3" "subtype3" "subtype3" "subtype4" "subtype4" "subtype3"
[355] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[361] "subtype2" "subtype1" "subtype4" "subtype1" "subtype4" "subtype2"
[367] "subtype2" "subtype3" "subtype4" "subtype1" "subtype4" "subtype4"
[373] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype4"
[379] "subtype4" "subtype1" "subtype4" "subtype3" "subtype2" "subtype3"
[385] "subtype3" "subtype3" "subtype3" "subtype1" "subtype4" "subtype3"
[391] "subtype3" "subtype3" "subtype1" "subtype4" "subtype4" "subtype1"
[397] "subtype1" "subtype1" "subtype4" "subtype2" "subtype1" "subtype4"
[403] "subtype1" "subtype4" "subtype1" "subtype1" "subtype4" "subtype3"
[409] "subtype4" "subtype1" "subtype1" "subtype4" "subtype4" "subtype2"
[415] "subtype2" "subtype1" "subtype1" "subtype3" "subtype4" "subtype4"
[421] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype1"
[427] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype2"
[433] "subtype1" "subtype4" "subtype4" "subtype4" "subtype3" "subtype3"
[439] "subtype4" "subtype1" "subtype3" "subtype1" "subtype4" "subtype1"
[445] "subtype3" "subtype4" "subtype3" "subtype3" "subtype4" "subtype3"
[451] "subtype3" "subtype1" "subtype3" "subtype3" "subtype4" "subtype4"
[457] "subtype3" "subtype3"
D5V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV STAGE IVA STAGE IVC
  subtype1      84       28        25        1         3         2
  subtype2      35        1        12        0         4         0
  subtype3      63       14        23        0         9         1
  subtype4      81        7        42        1        23         2
D5V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 53 53 36  2
  subtype2 22 12 15  2
  subtype3 32 46 31  2
  subtype4 27 43 72 13
D5V4, multiclass
D5V5, binary
          cls
clus        0  1
  subtype1 95 25
  subtype2 18 34
  subtype3 47 55
  subtype4 50 93
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   95   25
  subtype2   18   34
  subtype3   47   55
  subtype4   50   93
   clus
vv  subtype1 subtype2 subtype3 subtype4
  0       95       18       47       50
  1       25       34       55       93
          vv
clus       M0 M1 MX
  subtype1 61  3 79
  subtype2 36  0 16
  subtype3 67  2 42
  subtype4 86  3 67
D5V6, multiclass
D5V7, binary
          cls
clus         0   1
  subtype1 105  39
  subtype2  37  15
  subtype3  85  26
  subtype4 113  43
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  105   39
  subtype2   37   15
  subtype3   85   26
  subtype4  113   43
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE      105       37       85      113
  MALE         39       15       26       43
          vv
clus       OTHER  SPECIFY THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL
  subtype1              2                                            60
  subtype2              1                                            44
  subtype3              2                                            94
  subtype4              4                                           123
          vv
clus       THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED)
  subtype1                                                                     81
  subtype2                                                                      2
  subtype3                                                                     13
  subtype4                                                                      3
          vv
clus       THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES)
  subtype1                                                                   1
  subtype2                                                                   5
  subtype3                                                                   2
  subtype4                                                                  26
D5V8, multiclass
D5V9, binary
          cls
clus         0   1
  subtype1   1 143
  subtype2   0  52
  subtype3   2 109
  subtype4  10 146
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1  143
  subtype2    0   52
  subtype3    2  109
  subtype4   10  146
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         1        0        2       10
  YES      143       52      109      146
D5V10, binary
          cls
clus         0   1
  subtype1 120   6
  subtype2  44   2
  subtype3  93   4
  subtype4 133   5
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  120    6
  subtype2   44    2
  subtype3   93    4
  subtype4  133    5
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO       120       44       93      133
  YES        6        2        4        5
          vv
clus       MINIMAL (T3) MODERATE/ADVANCED (T4A) NONE VERY ADVANCED (T4B)
  subtype1           17                       1  121                   0
  subtype2           13                       2   36                   0
  subtype3           29                       0   79                   0
  subtype4           61                      12   78                   1
D5V11, multiclass
          vv
clus        R0  R1  R2  RX
  subtype1 117   8   0   7
  subtype2  36   7   0   5
  subtype3  88   8   1   7
  subtype4 120  21   2   9
D5V12, multiclass
D5V13, continuous
D5V14, binary
          cls
clus        0  1
  subtype1 66 75
  subtype2 24 26
  subtype3 57 51
  subtype4 61 93
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   66   75
  subtype2   24   26
  subtype3   57   51
  subtype4   61   93
            clus
vv           subtype1 subtype2 subtype3 subtype4
  MULTIFOCAL       66       24       57       61
  UNIFOCAL         75       26       51       93
D5V15, continuous

Clustering(6) Variable = MRNASEQ_CHIERARCHICAL
D6V1, survival
          sevent
clus2        0   1
  subtype1 123   3
  subtype2 195   7
  subtype3  89   1
  subtype4  38   2
subtype1 subtype2 subtype3 subtype4 
     126      202       90       40 
subtype1 subtype2 subtype3 subtype4 
       3        7        1        2 
$subtype1
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0ZA TCGA-BJ-A0ZC TCGA-BJ-A0ZE 
       24.79        13.78        18.21        18.87        11.57        16.73 
TCGA-BJ-A0ZG TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A191 TCGA-BJ-A192 TCGA-BJ-A28V 
        7.56        23.34        20.58         4.80         8.09         5.10 
TCGA-BJ-A291 TCGA-BJ-A3PT TCGA-BJ-A45C TCGA-BJ-A45D TCGA-BJ-A45F TCGA-BJ-A45G 
       14.50        12.07         5.72         6.48         3.45         6.35 
TCGA-BJ-A45K TCGA-CE-A484 TCGA-DE-A2OL TCGA-DE-A4M9 TCGA-DJ-A13M TCGA-DJ-A13R 
        8.98         0.39         5.98         4.87         9.01         3.02 
TCGA-DJ-A13S TCGA-DJ-A13W TCGA-DJ-A1QG TCGA-DJ-A1QL TCGA-DJ-A2PP TCGA-DJ-A2Q0 
        8.71        14.93         6.97         6.97         5.00         8.12 
TCGA-DJ-A2Q2 TCGA-DJ-A2QB TCGA-DJ-A3UP TCGA-DJ-A3UT TCGA-DJ-A3VG TCGA-DJ-A3VL 
        6.77        10.85         5.49        15.42         8.32        17.19 
TCGA-DJ-A3VM TCGA-DJ-A4UR TCGA-E3-A3DZ TCGA-E8-A416 TCGA-EL-A3CX TCGA-EL-A3CZ 
       15.81        10.98        12.07         0.72        80.91        58.78 
TCGA-EL-A3D5 TCGA-EL-A3GO TCGA-EL-A3GW TCGA-EL-A3H1 TCGA-EL-A3H2 TCGA-EL-A3T2 
       33.44        39.32        37.25        49.32        33.47        32.48 
TCGA-EL-A3ZH TCGA-EL-A3ZR TCGA-EL-A4JV TCGA-EL-A4K2 TCGA-EL-A4K6 TCGA-EL-A4KI 
       78.97        48.16        45.80        19.53        28.73         8.68 
TCGA-EM-A1CW TCGA-EM-A1YA TCGA-EM-A1YB TCGA-EM-A1YC TCGA-EM-A1YD TCGA-EM-A1YE 
       18.05        19.79        19.46        54.21        57.01        54.08 
TCGA-EM-A22J TCGA-EM-A22K TCGA-EM-A22L TCGA-EM-A22N TCGA-EM-A22Q TCGA-EM-A2CJ 
       14.47        15.72        10.45        10.65        14.20        16.44 
TCGA-EM-A2CK TCGA-EM-A2CL TCGA-EM-A2CN TCGA-EM-A2CO TCGA-EM-A2CP TCGA-EM-A2CQ 
       17.85        13.18        23.51         6.02         2.96        12.30 
TCGA-EM-A2CR TCGA-EM-A2CT TCGA-EM-A2OV TCGA-EM-A2OW TCGA-EM-A2OY TCGA-EM-A2P2 
       13.64        10.49        22.16        13.84        17.59        17.29 
TCGA-EM-A3AI TCGA-EM-A3AJ TCGA-EM-A3AL TCGA-EM-A3AP TCGA-EM-A3FL TCGA-EM-A3FN 
       17.46        18.94        14.14         8.35        16.77        12.07 
TCGA-EM-A3FP TCGA-EM-A3FR TCGA-EM-A3O6 TCGA-EM-A3O8 TCGA-EM-A3O9 TCGA-EM-A3OA 
       17.39        15.02        11.15        12.53         9.24        13.91 
TCGA-EM-A3OB TCGA-EM-A3ST TCGA-EM-A3SY TCGA-EM-A4FH TCGA-EM-A4FK TCGA-EM-A4FR 
        7.82        11.51        13.51        16.90         8.98         5.03 
TCGA-EM-A4FU TCGA-EM-A4G1 TCGA-ET-A25I TCGA-ET-A25P TCGA-ET-A2N3 TCGA-ET-A2N5 
       37.87         0.95        48.20        18.35        19.76        58.22 
TCGA-ET-A39I TCGA-ET-A39N TCGA-ET-A3DS TCGA-ET-A3DV TCGA-ET-A40P TCGA-ET-A4KQ 
       13.74        98.56         0.30       132.36         3.22         1.94 
TCGA-FE-A239 TCGA-FK-A3SD TCGA-FY-A2QD TCGA-FY-A3I5 TCGA-FY-A3NM TCGA-FY-A3NP 
       33.63         0.89         1.25         1.64         0.99        16.14 
TCGA-FY-A3R9 TCGA-FY-A3W9 TCGA-FY-A3WA TCGA-FY-A40M TCGA-H2-A2K9 TCGA-H2-A3RH 
       16.57         0.76         0.95         4.54        11.31        12.46 
TCGA-IM-A41Z TCGA-J8-A3O0 TCGA-J8-A4HY TCGA-KS-A41I TCGA-KS-A41L TCGA-KS-A4ID 
        9.63        43.17         0.20        15.95        86.70        20.48 

$subtype2
TCGA-BJ-A0Z3 TCGA-BJ-A0Z5 TCGA-BJ-A0Z9 TCGA-BJ-A0ZB TCGA-BJ-A0ZH TCGA-BJ-A28R 
       16.34        14.73         8.25         4.01        15.12         4.87 
TCGA-BJ-A28X TCGA-BJ-A28Z TCGA-BJ-A2NA TCGA-BJ-A3PR TCGA-BJ-A3PU TCGA-BJ-A45I 
       17.49         1.22         2.10         8.02        10.03         6.15 
TCGA-BJ-A45J TCGA-BJ-A4O8 TCGA-BJ-A4O9 TCGA-CE-A3ME TCGA-CE-A483 TCGA-DE-A0XZ 
        5.06         4.93         5.95         0.23         0.10        20.22 
TCGA-DE-A0Y2 TCGA-DE-A0Y3 TCGA-DE-A4MC TCGA-DE-A4MD TCGA-DJ-A13U TCGA-DJ-A1QD 
       15.42        36.46        17.39        12.00        12.92        10.98 
TCGA-DJ-A1QE TCGA-DJ-A1QH TCGA-DJ-A1QO TCGA-DJ-A1QQ TCGA-DJ-A2PN TCGA-DJ-A2PO 
       99.98         7.99         1.02         5.95        10.06         7.96 
TCGA-DJ-A2PT TCGA-DJ-A2PX TCGA-DJ-A2PY TCGA-DJ-A2PZ TCGA-DJ-A2Q1 TCGA-DJ-A2Q3 
        9.60         5.03         8.78         8.42         9.34         9.21 
TCGA-DJ-A2Q4 TCGA-DJ-A2Q5 TCGA-DJ-A2Q6 TCGA-DJ-A2Q9 TCGA-DJ-A3UM TCGA-DJ-A3UQ 
        9.44         9.90         8.61        10.36        17.23         9.11 
TCGA-DJ-A3UW TCGA-DJ-A3V0 TCGA-DJ-A3V2 TCGA-DJ-A3V3 TCGA-DJ-A3V5 TCGA-DJ-A3V7 
       43.00        25.02         7.40        17.75         7.86         9.83 
TCGA-DJ-A3V8 TCGA-DJ-A3VA TCGA-DJ-A3VB TCGA-DJ-A3VD TCGA-DJ-A3VE TCGA-DJ-A3VF 
        8.52        11.93        11.21        11.51         4.41         7.73 
TCGA-DJ-A3VJ TCGA-DJ-A4UT TCGA-DJ-A4V2 TCGA-DJ-A4V5 TCGA-DO-A1K0 TCGA-DO-A2HM 
       17.36        12.20         3.09        16.14        21.53         2.30 
TCGA-E3-A3DY TCGA-E3-A3E1 TCGA-E3-A3E2 TCGA-E3-A3E3 TCGA-E8-A242 TCGA-E8-A2EA 
       31.07        40.18        63.16        30.28         1.12        22.29 
TCGA-E8-A3X7 TCGA-E8-A417 TCGA-E8-A418 TCGA-E8-A433 TCGA-E8-A44K TCGA-E8-A44M 
        1.48         0.26         1.48         0.16         0.39         0.39 
TCGA-EL-A3CM TCGA-EL-A3CN TCGA-EL-A3CR TCGA-EL-A3CS TCGA-EL-A3CT TCGA-EL-A3CU 
       26.73       155.54         7.66        45.53        60.95       157.15 
TCGA-EL-A3CV TCGA-EL-A3CY TCGA-EL-A3D6 TCGA-EL-A3GP TCGA-EL-A3GR TCGA-EL-A3GS 
       37.94         4.18       108.36         1.41       102.84        65.39 
TCGA-EL-A3GU TCGA-EL-A3GX TCGA-EL-A3GY TCGA-EL-A3H4 TCGA-EL-A3H5 TCGA-EL-A3H7 
      124.04       147.75       101.13        38.66        52.73       126.97 
TCGA-EL-A3H8 TCGA-EL-A3MY TCGA-EL-A3MZ TCGA-EL-A3N2 TCGA-EL-A3N3 TCGA-EL-A3T1 
      131.15        17.49        52.47        12.16       147.42       129.57 
TCGA-EL-A3T3 TCGA-EL-A3T6 TCGA-EL-A3T9 TCGA-EL-A3ZK TCGA-EL-A3ZP TCGA-EL-A3ZS 
      116.91        98.20         5.72        31.46        52.50         7.04 
TCGA-EL-A3ZT TCGA-EL-A4JW TCGA-EL-A4JX TCGA-EL-A4JZ TCGA-EL-A4K1 TCGA-EL-A4K4 
       44.61        19.27        45.96        37.94        19.59        33.60 
TCGA-EL-A4KG TCGA-EM-A1CT TCGA-EM-A1CU TCGA-EM-A22I TCGA-EM-A22O TCGA-EM-A22P 
       13.32        18.18        20.91        14.70        11.74        11.15 
TCGA-EM-A2OZ TCGA-EM-A2P0 TCGA-EM-A2P1 TCGA-EM-A2P3 TCGA-EM-A3FK TCGA-EM-A3FM 
       12.07        17.59        17.46        14.60        23.77        21.01 
TCGA-EM-A3FO TCGA-EM-A3FQ TCGA-EM-A3O3 TCGA-EM-A3SU TCGA-EM-A3SZ TCGA-EM-A4FF 
       17.49        16.18        14.50        16.41        12.79        70.62 
TCGA-EM-A4FM TCGA-EM-A4FN TCGA-EM-A4FQ TCGA-ET-A25G TCGA-ET-A25J TCGA-ET-A25L 
        4.80         8.58         9.80        47.47        29.69        14.79 
TCGA-ET-A25M TCGA-ET-A25N TCGA-ET-A25R TCGA-ET-A2MX TCGA-ET-A2MY TCGA-ET-A2N0 
       12.33        14.79        20.42        54.02        22.09        16.08 
TCGA-ET-A39O TCGA-ET-A39P TCGA-ET-A39R TCGA-ET-A39T TCGA-ET-A3BN TCGA-ET-A3BO 
       61.02        58.72        57.11        59.15        28.24         5.82 
TCGA-ET-A3BS TCGA-ET-A3BT TCGA-ET-A3BU TCGA-ET-A3BX TCGA-ET-A3DO TCGA-ET-A3DR 
        5.52        24.72        38.30         4.50        80.81        43.50 
TCGA-ET-A3DT TCGA-ET-A3DW TCGA-ET-A40Q TCGA-ET-A40S TCGA-ET-A40T TCGA-ET-A4KN 
       17.98        24.69         7.17         5.00         2.10         4.01 
TCGA-FE-A22Z TCGA-FE-A230 TCGA-FE-A231 TCGA-FE-A233 TCGA-FE-A234 TCGA-FE-A236 
       59.15        59.70        31.59        24.69        68.22        66.77 
TCGA-FE-A237 TCGA-FE-A238 TCGA-FE-A23A TCGA-FE-A3PB TCGA-FE-A3PC TCGA-FK-A3SE 
       81.34        39.95        81.83        85.12        85.64        21.99 
TCGA-FY-A3BL TCGA-FY-A3I4 TCGA-FY-A3ON TCGA-FY-A3R8 TCGA-FY-A3RA TCGA-FY-A3YR 
        1.15         1.12         1.51         4.64        18.08         6.84 
TCGA-FY-A40L TCGA-FY-A4B3 TCGA-FY-A4B4 TCGA-GE-A2C6 TCGA-H2-A26U TCGA-H2-A3RI 
        6.54         1.35         1.15        12.53        10.98         2.96 
TCGA-H2-A421 TCGA-H2-A422 TCGA-IM-A3EB TCGA-IM-A3ED TCGA-IM-A3U2 TCGA-IM-A3U3 
        2.20         2.89        48.92        47.41        10.26        16.87 
TCGA-IM-A41Y TCGA-IM-A420 TCGA-IM-A4EB TCGA-J8-A3NZ TCGA-J8-A3O1 TCGA-J8-A3YE 
        9.80         2.96         8.65         2.24        27.19        27.81 
TCGA-J8-A3YF TCGA-J8-A3YG TCGA-J8-A4HW TCGA-KS-A41J TCGA-KS-A4I3 TCGA-KS-A4I9 
       24.69        22.29         2.60        15.68        12.03        17.42 
TCGA-KS-A4IB TCGA-KS-A4IC TCGA-L6-A4EU TCGA-MK-A4N6 
       64.54        14.70         0.72        16.60 

$subtype3
TCGA-BJ-A290 TCGA-CE-A13K TCGA-CE-A3MD TCGA-CE-A481 TCGA-CE-A482 TCGA-DE-A3KN 
       20.58         0.53         0.20         0.10         0.07        15.85 
TCGA-DJ-A13P TCGA-DJ-A13T TCGA-DJ-A13V TCGA-DJ-A13X TCGA-DJ-A1QF TCGA-DJ-A1QI 
      138.05        24.92        11.90         7.99        18.05        15.02 
TCGA-DJ-A1QN TCGA-DJ-A2PQ TCGA-DJ-A2PR TCGA-DJ-A2PU TCGA-DJ-A2PV TCGA-DJ-A2PW 
        8.98        20.48        10.45        10.26         7.96         7.69 
TCGA-DJ-A2Q7 TCGA-DJ-A2QC TCGA-DJ-A3UK TCGA-DJ-A3UN TCGA-DJ-A3UO TCGA-DJ-A3UR 
        9.57         9.99         8.25        12.49        15.78        23.70 
TCGA-DJ-A3V9 TCGA-DJ-A4UL TCGA-DO-A1JZ TCGA-E3-A3E0 TCGA-E3-A3E5 TCGA-E8-A432 
        7.13        11.93        54.90        66.35        14.04         0.53 
TCGA-E8-A438 TCGA-EL-A3CL TCGA-EL-A3CP TCGA-EL-A3GQ TCGA-EL-A3GV TCGA-EL-A3MW 
        6.90        31.63       158.83        30.18        50.37       108.66 
TCGA-EL-A3T7 TCGA-EL-A3T8 TCGA-EL-A3TB TCGA-EL-A3ZG TCGA-EL-A3ZL TCGA-EL-A3ZQ 
       41.29        95.38        82.82        77.33        50.30        45.53 
TCGA-EL-A4K0 TCGA-EL-A4K7 TCGA-EL-A4K9 TCGA-EL-A4KD TCGA-EL-A4KH TCGA-EM-A1CS 
       19.00        41.13        37.78        29.95        11.87        26.86 
TCGA-EM-A1CV TCGA-EM-A2CS TCGA-EM-A2CU TCGA-EM-A2OX TCGA-EM-A3AK TCGA-EM-A3AN 
       12.36        15.16        13.12        19.73        15.68        19.63 
TCGA-EM-A3AO TCGA-EM-A3AQ TCGA-EM-A3FJ TCGA-EM-A3O7 TCGA-EM-A3SX TCGA-ET-A25K 
       13.38        16.44        27.95         7.33        15.62        32.35 
TCGA-ET-A25O TCGA-ET-A2MZ TCGA-ET-A2N4 TCGA-ET-A39J TCGA-ET-A39K TCGA-ET-A39L 
       27.09        12.26         2.66        71.01        72.49        65.33 
TCGA-ET-A39M TCGA-ET-A3BP TCGA-ET-A3BQ TCGA-ET-A3BW TCGA-ET-A3DP TCGA-FE-A235 
       84.89         4.18         2.43         2.37        56.88       102.90 
TCGA-FE-A3PA TCGA-FE-A3PD TCGA-FK-A3S3 TCGA-FK-A3SB TCGA-FK-A3SG TCGA-FK-A3SH 
       94.42        78.77        46.06         4.08         0.92        48.10 
TCGA-FK-A4UB TCGA-FY-A40K TCGA-J8-A3YH TCGA-J8-A42S TCGA-KS-A41F TCGA-KS-A4I1 
       91.13         4.14         5.72         2.47       120.99         5.98 
TCGA-KS-A4I5 TCGA-KS-A4I7 TCGA-L6-A4EQ TCGA-L6-A4ET TCGA-MK-A4N7 TCGA-MK-A4N9 
        6.71        12.36        11.87         1.12        14.47         8.71 

$subtype4
TCGA-BJ-A0ZJ TCGA-BJ-A28T TCGA-BJ-A45H TCGA-CE-A27D TCGA-CE-A485 TCGA-DJ-A13O 
       17.69         2.76         7.79         0.10         0.10         7.07 
TCGA-DJ-A1QM TCGA-DJ-A2PS TCGA-DJ-A2QA TCGA-DJ-A3US TCGA-DJ-A3UU TCGA-DJ-A3UX 
        0.99         1.94        12.43        20.71        17.69        11.34 
TCGA-DJ-A3UY TCGA-DJ-A3UZ TCGA-DJ-A3V4 TCGA-DJ-A4UQ TCGA-DJ-A4UW TCGA-DJ-A4V0 
       13.32        12.76        14.56        10.78         9.44         9.34 
TCGA-DJ-A4V4 TCGA-E8-A413 TCGA-E8-A414 TCGA-E8-A415 TCGA-E8-A434 TCGA-E8-A436 
        3.35         0.33         0.23         0.16         0.23         1.15 
TCGA-E8-A437 TCGA-EL-A3CO TCGA-EL-A3CW TCGA-EL-A3T0 TCGA-EL-A3TA TCGA-EM-A3AR 
        7.69        97.74        57.01       130.72        66.90        16.77 
TCGA-EM-A4FO TCGA-EM-A4FV TCGA-ET-A39S TCGA-ET-A3DQ TCGA-ET-A40R TCGA-FY-A3R6 
        8.35        12.72        55.10        59.87         4.80         0.76 
TCGA-FY-A3R7 TCGA-FY-A40N TCGA-J8-A3O2 TCGA-J8-A3YD 
        0.03         0.89         1.35        31.82 

subtype1 subtype2 subtype3 subtype4 
    0.20     0.10     0.07     0.03 
subtype1 subtype2 subtype3 subtype4 
  132.36   157.15   158.83   130.72 
subtype1 subtype2 subtype3 subtype4 
  13.760   14.955   15.650    8.845 
[1] "0.2 - 132.4 (13.8)" "0.1 - 157.2 (15.0)" "0.1 - 158.8 (15.6)"
[4] "0.0 - 130.7 (8.8)" 
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [13] "subtype4" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [19] "subtype4" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [25] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype4" "subtype2" "subtype2" "subtype1"
 [37] "subtype2" "subtype2" "subtype3" "subtype4" "subtype3" "subtype2"
 [43] "subtype3" "subtype3" "subtype2" "subtype1" "subtype4" "subtype2"
 [49] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [55] "subtype2" "subtype1" "subtype4" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
 [67] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [73] "subtype4" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype1" "subtype3" "subtype3" "subtype4" "subtype2" "subtype3"
 [85] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [91] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype4" "subtype1" "subtype3" "subtype3"
[103] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[109] "subtype4" "subtype1" "subtype4" "subtype2" "subtype4" "subtype4"
[115] "subtype4" "subtype2" "subtype2" "subtype2" "subtype4" "subtype2"
[121] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[133] "subtype3" "subtype4" "subtype1" "subtype2" "subtype4" "subtype4"
[139] "subtype2" "subtype4" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[151] "subtype3" "subtype2" "subtype2" "subtype2" "subtype4" "subtype4"
[157] "subtype4" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype4" "subtype4" "subtype4" "subtype3" "subtype2" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype4" "subtype3" "subtype2"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype4" "subtype1"
[181] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[187] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[193] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[199] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[205] "subtype2" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
[211] "subtype3" "subtype3" "subtype2" "subtype4" "subtype3" "subtype3"
[217] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[223] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[229] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[235] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[241] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[247] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[253] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[259] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[265] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[271] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[277] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[283] "subtype3" "subtype1" "subtype3" "subtype4" "subtype3" "subtype2"
[289] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[295] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[301] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[307] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[313] "subtype4" "subtype2" "subtype1" "subtype1" "subtype4" "subtype1"
[319] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[325] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[331] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[337] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[343] "subtype2" "subtype2" "subtype4" "subtype2" "subtype2" "subtype2"
[349] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[355] "subtype2" "subtype2" "subtype3" "subtype4" "subtype2" "subtype1"
[361] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype4"
[367] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[373] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[379] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[385] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[391] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[397] "subtype1" "subtype1" "subtype2" "subtype4" "subtype4" "subtype2"
[403] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[409] "subtype2" "subtype1" "subtype4" "subtype2" "subtype2" "subtype2"
[415] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[421] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[427] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype4"
[433] "subtype4" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[439] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[445] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[451] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[457] "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [13] "subtype4" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [19] "subtype4" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [25] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype4" "subtype2" "subtype2" "subtype1"
 [37] "subtype2" "subtype2" "subtype3" "subtype4" "subtype3" "subtype2"
 [43] "subtype3" "subtype3" "subtype2" "subtype1" "subtype4" "subtype2"
 [49] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [55] "subtype2" "subtype1" "subtype4" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
 [67] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [73] "subtype4" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype1" "subtype3" "subtype3" "subtype4" "subtype2" "subtype3"
 [85] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [91] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype4" "subtype1" "subtype3" "subtype3"
[103] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[109] "subtype4" "subtype1" "subtype4" "subtype2" "subtype4" "subtype4"
[115] "subtype4" "subtype2" "subtype2" "subtype2" "subtype4" "subtype2"
[121] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[133] "subtype3" "subtype4" "subtype1" "subtype2" "subtype4" "subtype4"
[139] "subtype2" "subtype4" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[151] "subtype3" "subtype2" "subtype2" "subtype2" "subtype4" "subtype4"
[157] "subtype4" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype4" "subtype4" "subtype4" "subtype3" "subtype2" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype4" "subtype3" "subtype2"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype4" "subtype1"
[181] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[187] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[193] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[199] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[205] "subtype2" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
[211] "subtype3" "subtype3" "subtype2" "subtype4" "subtype3" "subtype3"
[217] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[223] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[229] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[235] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[241] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[247] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[253] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[259] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[265] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[271] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[277] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[283] "subtype3" "subtype1" "subtype3" "subtype4" "subtype3" "subtype2"
[289] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[295] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[301] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[307] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[313] "subtype4" "subtype2" "subtype1" "subtype1" "subtype4" "subtype1"
[319] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[325] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[331] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[337] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[343] "subtype2" "subtype2" "subtype4" "subtype2" "subtype2" "subtype2"
[349] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[355] "subtype2" "subtype2" "subtype3" "subtype4" "subtype2" "subtype1"
[361] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype4"
[367] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[373] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[379] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[385] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[391] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[397] "subtype1" "subtype1" "subtype2" "subtype4" "subtype4" "subtype2"
[403] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[409] "subtype2" "subtype1" "subtype4" "subtype2" "subtype2" "subtype2"
[415] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[421] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[427] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype4"
[433] "subtype4" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[439] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[445] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[451] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[457] "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [13] "subtype4" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [19] "subtype4" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [25] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype4" "subtype2" "subtype2" "subtype1"
 [37] "subtype2" "subtype2" "subtype3" "subtype4" "subtype3" "subtype2"
 [43] "subtype3" "subtype3" "subtype2" "subtype1" "subtype4" "subtype2"
 [49] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [55] "subtype2" "subtype1" "subtype4" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
 [67] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [73] "subtype4" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype1" "subtype3" "subtype3" "subtype4" "subtype2" "subtype3"
 [85] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [91] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype4" "subtype1" "subtype3" "subtype3"
[103] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[109] "subtype4" "subtype1" "subtype4" "subtype2" "subtype4" "subtype4"
[115] "subtype4" "subtype2" "subtype2" "subtype2" "subtype4" "subtype2"
[121] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[133] "subtype3" "subtype4" "subtype1" "subtype2" "subtype4" "subtype4"
[139] "subtype2" "subtype4" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[151] "subtype3" "subtype2" "subtype2" "subtype2" "subtype4" "subtype4"
[157] "subtype4" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype4" "subtype4" "subtype4" "subtype3" "subtype2" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype4" "subtype3" "subtype2"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype4" "subtype1"
[181] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[187] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[193] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[199] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[205] "subtype2" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
[211] "subtype3" "subtype3" "subtype2" "subtype4" "subtype3" "subtype3"
[217] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[223] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[229] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[235] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[241] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[247] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[253] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[259] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[265] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[271] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[277] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[283] "subtype3" "subtype1" "subtype3" "subtype4" "subtype3" "subtype2"
[289] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[295] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[301] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[307] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[313] "subtype4" "subtype2" "subtype1" "subtype1" "subtype4" "subtype1"
[319] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[325] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[331] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[337] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[343] "subtype2" "subtype2" "subtype4" "subtype2" "subtype2" "subtype2"
[349] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[355] "subtype2" "subtype2" "subtype3" "subtype4" "subtype2" "subtype1"
[361] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype4"
[367] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[373] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[379] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[385] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[391] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[397] "subtype1" "subtype1" "subtype2" "subtype4" "subtype4" "subtype2"
[403] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[409] "subtype2" "subtype1" "subtype4" "subtype2" "subtype2" "subtype2"
[415] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[421] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[427] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype4"
[433] "subtype4" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[439] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[445] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[451] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[457] "subtype3" "subtype3"
D6V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV STAGE IVA STAGE IVC
  subtype1      72       28        20        1         3         2
  subtype2     114       10        53        1        25         2
  subtype3      51       12        17        0         8         1
  subtype4      26        0        12        0         3         0
D6V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 43 52 30  2
  subtype2 50 53 86 15
  subtype3 23 40 25  2
  subtype4 18  9 13  0
D6V4, multiclass
D6V5, binary
          cls
clus         0   1
  subtype1  86  17
  subtype2  63 130
  subtype3  40  41
  subtype4  21  19
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   86   17
  subtype2   63  130
  subtype3   40   41
  subtype4   21   19
   clus
vv  subtype1 subtype2 subtype3 subtype4
  0       86       63       40       21
  1       17      130       41       19
          vv
clus        M0  M1  MX
  subtype1  51   3  72
  subtype2 116   3  86
  subtype3  52   2  36
  subtype4  31   0  10
D6V6, multiclass
D6V7, binary
          cls
clus         0   1
  subtype1  91  36
  subtype2 150  55
  subtype3  69  21
  subtype4  30  11
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   91   36
  subtype2  150   55
  subtype3   69   21
  subtype4   30   11
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       91      150       69       30
  MALE         36       55       21       11
          vv
clus       OTHER  SPECIFY THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL
  subtype1              2                                            47
  subtype2              6                                           164
  subtype3              0                                            78
  subtype4              1                                            32
          vv
clus       THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED)
  subtype1                                                                     78
  subtype2                                                                      5
  subtype3                                                                     11
  subtype4                                                                      5
          vv
clus       THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES)
  subtype1                                                                   0
  subtype2                                                                  30
  subtype3                                                                   1
  subtype4                                                                   3
D6V8, multiclass
D6V9, binary
          cls
clus         0   1
  subtype1   1 126
  subtype2  10 195
  subtype3   2  88
  subtype4   0  41
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1  126
  subtype2   10  195
  subtype3    2   88
  subtype4    0   41
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         1       10        2        0
  YES      126      195       88       41
D6V10, binary
          cls
clus         0   1
  subtype1 106   5
  subtype2 172   8
  subtype3  79   3
  subtype4  33   1
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  106    5
  subtype2  172    8
  subtype3   79    3
  subtype4   33    1
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO       106      172       79       33
  YES        5        8        3        1
          vv
clus       MINIMAL (T3) MODERATE/ADVANCED (T4A) NONE VERY ADVANCED (T4B)
  subtype1           12                       1  109                   0
  subtype2           73                      14  111                   1
  subtype3           23                       0   66                   0
  subtype4           12                       0   28                   0
D6V11, multiclass
          vv
clus        R0  R1  R2  RX
  subtype1 101   8   0   7
  subtype2 153  25   2  14
  subtype3  75   7   1   5
  subtype4  32   4   0   2
D6V12, multiclass
D6V13, continuous
D6V14, binary
          cls
clus         0   1
  subtype1  59  65
  subtype2  82 119
  subtype3  46  43
  subtype4  21  18
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   59   65
  subtype2   82  119
  subtype3   46   43
  subtype4   21   18
            clus
vv           subtype1 subtype2 subtype3 subtype4
  MULTIFOCAL       59       82       46       21
  UNIFOCAL         65      119       43       18
D6V15, continuous

Clustering(7) Variable = MIRSEQ_CNMF
D7V1, survival
          sevent
clus2        0   1
  subtype1 140   3
  subtype2 165   2
  subtype3 153   8
subtype1 subtype2 subtype3 
     143      167      161 
subtype1 subtype2 subtype3 
       3        2        8 
$subtype1
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0ZA TCGA-BJ-A0ZC TCGA-BJ-A0ZE 
       24.79        13.78        18.21        18.87        11.57        16.73 
TCGA-BJ-A0ZG TCGA-BJ-A0ZJ TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A191 TCGA-BJ-A192 
        7.56        17.69        23.34        20.58         4.80         8.09 
TCGA-BJ-A28V TCGA-BJ-A28W TCGA-BJ-A45C TCGA-BJ-A45D TCGA-BJ-A45F TCGA-BJ-A45G 
        5.10         1.12         5.72         6.48         3.45         6.35 
TCGA-BJ-A45K TCGA-CE-A3ME TCGA-CE-A484 TCGA-DE-A2OL TCGA-DE-A4M9 TCGA-DE-A4MD 
        8.98         0.23         0.39         5.98         4.87        12.00 
TCGA-DJ-A13M TCGA-DJ-A13R TCGA-DJ-A13S TCGA-DJ-A13W TCGA-DJ-A13X TCGA-DJ-A1QG 
        9.01         3.02         8.71        14.93         7.99         6.97 
TCGA-DJ-A1QL TCGA-DJ-A2PP TCGA-DJ-A2Q0 TCGA-DJ-A2Q2 TCGA-DJ-A2QB TCGA-DJ-A3UP 
        6.97         5.00         8.12         6.77        10.85         5.49 
TCGA-DJ-A3US TCGA-DJ-A3UT TCGA-DJ-A3VG TCGA-DJ-A3VL TCGA-DJ-A3VM TCGA-DJ-A4UR 
       20.71        15.42         8.32        17.19        15.81        10.98 
TCGA-DJ-A4V0 TCGA-DO-A1JZ TCGA-E3-A3DZ TCGA-E3-A3E0 TCGA-E3-A3E5 TCGA-EL-A3CX 
        9.34        54.90        12.07        66.35        14.04        80.91 
TCGA-EL-A3CZ TCGA-EL-A3D5 TCGA-EL-A3GO TCGA-EL-A3GS TCGA-EL-A3GW TCGA-EL-A3H1 
       58.78        33.44        39.32        65.39        37.25        49.32 
TCGA-EL-A3H2 TCGA-EL-A3T2 TCGA-EL-A3ZH TCGA-EL-A3ZR TCGA-EL-A4JV TCGA-EL-A4K2 
       33.47        32.48        78.97        48.16        45.80        19.53 
TCGA-EL-A4K6 TCGA-EL-A4KI TCGA-EM-A1CW TCGA-EM-A1YA TCGA-EM-A1YB TCGA-EM-A1YC 
       28.73         8.68        18.05        19.79        19.46        54.21 
TCGA-EM-A1YE TCGA-EM-A22J TCGA-EM-A22K TCGA-EM-A22L TCGA-EM-A22N TCGA-EM-A22Q 
       54.08        14.47        15.72        10.45        10.65        14.20 
TCGA-EM-A2CJ TCGA-EM-A2CK TCGA-EM-A2CL TCGA-EM-A2CN TCGA-EM-A2CO TCGA-EM-A2CP 
       16.44        17.85        13.18        23.51         6.02         2.96 
TCGA-EM-A2CQ TCGA-EM-A2CR TCGA-EM-A2CT TCGA-EM-A2OV TCGA-EM-A2OW TCGA-EM-A2OY 
       12.30        13.64        10.49        22.16        13.84        17.59 
TCGA-EM-A2P2 TCGA-EM-A3AI TCGA-EM-A3AJ TCGA-EM-A3AL TCGA-EM-A3AP TCGA-EM-A3FL 
       17.29        17.46        18.94        14.14         8.35        16.77 
TCGA-EM-A3FN TCGA-EM-A3FP TCGA-EM-A3FR TCGA-EM-A3O6 TCGA-EM-A3O8 TCGA-EM-A3O9 
       12.07        17.39        15.02        11.15        12.53         9.24 
TCGA-EM-A3OA TCGA-EM-A3OB TCGA-EM-A3ST TCGA-EM-A3SY TCGA-EM-A4FH TCGA-EM-A4FK 
       13.91         7.82        11.51        13.51        16.90         8.98 
TCGA-EM-A4FR TCGA-EM-A4FU TCGA-EM-A4G1 TCGA-ET-A25I TCGA-ET-A25P TCGA-ET-A2MX 
        5.03        37.87         0.95        48.20        18.35        54.02 
TCGA-ET-A2N3 TCGA-ET-A2N5 TCGA-ET-A39I TCGA-ET-A39L TCGA-ET-A39N TCGA-ET-A3BQ 
       19.76        58.22        13.74        65.33        98.56         2.43 
TCGA-ET-A3BW TCGA-ET-A3DP TCGA-ET-A3DS TCGA-ET-A3DV TCGA-ET-A40P TCGA-ET-A40R 
        2.37        56.88         0.30       132.36         3.22         4.80 
TCGA-ET-A4KQ TCGA-FE-A230 TCGA-FE-A236 TCGA-FE-A239 TCGA-FE-A3PD TCGA-FK-A3S3 
        1.94        59.70        66.77        33.63        78.77        46.06 
TCGA-FK-A3SD TCGA-FY-A2QD TCGA-FY-A3I5 TCGA-FY-A3NM TCGA-FY-A3NP TCGA-FY-A3R9 
        0.89         1.25         1.64         0.99        16.14        16.57 
TCGA-FY-A3W9 TCGA-FY-A3WA TCGA-H2-A2K9 TCGA-H2-A3RH TCGA-IM-A41Z TCGA-J8-A3O0 
        0.76         0.95        11.31        12.46         9.63        43.17 
TCGA-J8-A3O1 TCGA-KS-A41I TCGA-KS-A41L TCGA-KS-A4IB TCGA-KS-A4ID 
       27.19        15.95        86.70        64.54        20.48 

$subtype2
TCGA-BJ-A0Z3 TCGA-BJ-A0Z5 TCGA-BJ-A0ZH TCGA-BJ-A28R TCGA-BJ-A28Z TCGA-BJ-A290 
       16.34        14.73        15.12         4.87         1.22        20.58 
TCGA-BJ-A2NA TCGA-BJ-A3PU TCGA-BJ-A45I TCGA-BJ-A45J TCGA-BJ-A4O9 TCGA-CE-A13K 
        2.10        10.03         6.15         5.06         5.95         0.53 
TCGA-CE-A482 TCGA-CE-A483 TCGA-DE-A0XZ TCGA-DE-A0Y2 TCGA-DE-A0Y3 TCGA-DE-A3KN 
        0.07         0.10        20.22        15.42        36.46        15.85 
TCGA-DE-A4MA TCGA-DE-A4MC TCGA-DJ-A13P TCGA-DJ-A13T TCGA-DJ-A13U TCGA-DJ-A1QI 
       16.64        17.39       138.05        24.92        12.92        15.02 
TCGA-DJ-A1QN TCGA-DJ-A2PO TCGA-DJ-A2PQ TCGA-DJ-A2PR TCGA-DJ-A2PU TCGA-DJ-A2PW 
        8.98         7.96        20.48        10.45        10.26         7.69 
TCGA-DJ-A2PX TCGA-DJ-A2Q4 TCGA-DJ-A2Q5 TCGA-DJ-A2Q7 TCGA-DJ-A2QC TCGA-DJ-A3UK 
        5.03         9.44         9.90         9.57         9.99         8.25 
TCGA-DJ-A3UN TCGA-DJ-A3UO TCGA-DJ-A3UR TCGA-DJ-A3V2 TCGA-DJ-A3V3 TCGA-DJ-A3V7 
       12.49        15.78        23.70         7.40        17.75         9.83 
TCGA-DJ-A3VA TCGA-DJ-A3VB TCGA-DJ-A3VE TCGA-DJ-A4UL TCGA-DJ-A4V2 TCGA-DJ-A4V5 
       11.93        11.21         4.41        11.93         3.09        16.14 
TCGA-DO-A1K0 TCGA-E3-A3DY TCGA-E3-A3E2 TCGA-E3-A3E3 TCGA-E8-A417 TCGA-E8-A418 
       21.53        31.07        63.16        30.28         0.26         1.48 
TCGA-E8-A438 TCGA-EL-A3CL TCGA-EL-A3CT TCGA-EL-A3D6 TCGA-EL-A3GV TCGA-EL-A3GX 
        6.90        31.63        60.95       108.36        50.37       147.75 
TCGA-EL-A3GY TCGA-EL-A3H4 TCGA-EL-A3H8 TCGA-EL-A3MW TCGA-EL-A3N2 TCGA-EL-A3N3 
      101.13        38.66       131.15       108.66        12.16       147.42 
TCGA-EL-A3T1 TCGA-EL-A3T3 TCGA-EL-A3T6 TCGA-EL-A3T7 TCGA-EL-A3T8 TCGA-EL-A3TB 
      129.57       116.91        98.20        41.29        95.38        82.82 
TCGA-EL-A3ZG TCGA-EL-A3ZQ TCGA-EL-A3ZT TCGA-EL-A4JX TCGA-EL-A4K7 TCGA-EL-A4K9 
       77.33        45.53        44.61        45.96        41.13        37.78 
TCGA-EL-A4KD TCGA-EL-A4KG TCGA-EL-A4KH TCGA-EM-A1CS TCGA-EM-A1CT TCGA-EM-A1CV 
       29.95        13.32        11.87        26.86        18.18        12.36 
TCGA-EM-A22I TCGA-EM-A22M TCGA-EM-A22O TCGA-EM-A2CS TCGA-EM-A2OZ TCGA-EM-A3AK 
       14.70        14.50        11.74        15.16        12.07        15.68 
TCGA-EM-A3AN TCGA-EM-A3AO TCGA-EM-A3AQ TCGA-EM-A3FJ TCGA-EM-A3FK TCGA-EM-A3FM 
       19.63        13.38        16.44        27.95        23.77        21.01 
TCGA-EM-A3FO TCGA-EM-A3O7 TCGA-EM-A3SU TCGA-EM-A3SX TCGA-EM-A3SZ TCGA-EM-A4FF 
       17.49         7.33        16.41        15.62        12.79        70.62 
TCGA-EM-A4FN TCGA-EM-A4FQ TCGA-EM-A4FV TCGA-ET-A25G TCGA-ET-A25J TCGA-ET-A25K 
        8.58         9.80        12.72        47.47        29.69        32.35 
TCGA-ET-A25N TCGA-ET-A25O TCGA-ET-A25R TCGA-ET-A2MY TCGA-ET-A2MZ TCGA-ET-A2N1 
       14.79        27.09        20.42        22.09        12.26        29.19 
TCGA-ET-A2N4 TCGA-ET-A39K TCGA-ET-A39M TCGA-ET-A39O TCGA-ET-A39R TCGA-ET-A39T 
        2.66        72.49        84.89        61.02        57.11        59.15 
TCGA-ET-A3BO TCGA-ET-A3BP TCGA-ET-A3BS TCGA-ET-A3BX TCGA-ET-A3DO TCGA-ET-A3DW 
        5.82         4.18         5.52         4.50        80.81        24.69 
TCGA-ET-A40S TCGA-FE-A231 TCGA-FE-A232 TCGA-FE-A233 TCGA-FE-A234 TCGA-FE-A235 
        5.00        31.59        44.25        24.69        68.22       102.90 
TCGA-FE-A23A TCGA-FE-A3PA TCGA-FE-A3PC TCGA-FK-A3SB TCGA-FK-A3SG TCGA-FK-A4UB 
       81.83        94.42        85.64         4.08         0.92        91.13 
TCGA-FY-A3BL TCGA-FY-A3ON TCGA-FY-A3R8 TCGA-FY-A3RA TCGA-FY-A40N TCGA-FY-A4B4 
        1.15         1.51         4.64        18.08         0.89         1.15 
TCGA-H2-A3RI TCGA-H2-A421 TCGA-H2-A422 TCGA-IM-A3EB TCGA-IM-A3ED TCGA-IM-A3U3 
        2.96         2.20         2.89        48.92        47.41        16.87 
TCGA-IM-A41Y TCGA-IM-A420 TCGA-J8-A3NZ TCGA-J8-A3YE TCGA-J8-A3YH TCGA-J8-A4HY 
        9.80         2.96         2.24        27.81         5.72         0.20 
TCGA-KS-A41F TCGA-KS-A41J TCGA-KS-A4I1 TCGA-KS-A4I5 TCGA-KS-A4I7 TCGA-KS-A4I9 
      120.99        15.68         5.98         6.71        12.36        17.42 
TCGA-L6-A4EP TCGA-L6-A4EQ TCGA-L6-A4ET TCGA-MK-A4N7 TCGA-MK-A4N9 
        0.59        11.87         1.12        14.47         8.71 

$subtype3
TCGA-BJ-A0Z9 TCGA-BJ-A0ZB TCGA-BJ-A28T TCGA-BJ-A28X TCGA-BJ-A291 TCGA-BJ-A3PR 
        8.25         4.01         2.76        17.49        14.50         8.02 
TCGA-BJ-A3PT TCGA-BJ-A45E TCGA-BJ-A45H TCGA-BJ-A4O8 TCGA-CE-A27D TCGA-CE-A3MD 
       12.07         0.03         7.79         4.93         0.10         0.20 
TCGA-CE-A481 TCGA-CE-A485 TCGA-DE-A4M8 TCGA-DE-A4MB TCGA-DJ-A13O TCGA-DJ-A1QD 
        0.10         0.10         6.08        11.57         7.07        10.98 
TCGA-DJ-A1QE TCGA-DJ-A1QF TCGA-DJ-A1QH TCGA-DJ-A1QM TCGA-DJ-A1QO TCGA-DJ-A1QQ 
       99.98        18.05         7.99         0.99         1.02         5.95 
TCGA-DJ-A2PN TCGA-DJ-A2PS TCGA-DJ-A2PT TCGA-DJ-A2PV TCGA-DJ-A2PY TCGA-DJ-A2PZ 
       10.06         1.94         9.60         7.96         8.78         8.42 
TCGA-DJ-A2Q1 TCGA-DJ-A2Q3 TCGA-DJ-A2Q6 TCGA-DJ-A2Q8 TCGA-DJ-A2Q9 TCGA-DJ-A2QA 
        9.34         9.21         8.61         7.07        10.36        12.43 
TCGA-DJ-A3UM TCGA-DJ-A3UQ TCGA-DJ-A3UU TCGA-DJ-A3UW TCGA-DJ-A3UX TCGA-DJ-A3UY 
       17.23         9.11        17.69        43.00        11.34        13.32 
TCGA-DJ-A3UZ TCGA-DJ-A3V0 TCGA-DJ-A3V4 TCGA-DJ-A3V5 TCGA-DJ-A3V8 TCGA-DJ-A3V9 
       12.76        25.02        14.56         7.86         8.52         7.13 
TCGA-DJ-A3VD TCGA-DJ-A3VF TCGA-DJ-A3VJ TCGA-DJ-A4UQ TCGA-DJ-A4UT TCGA-DJ-A4UW 
       11.51         7.73        17.36        10.78        12.20         9.44 
TCGA-DJ-A4V4 TCGA-DO-A2HM TCGA-E3-A3E1 TCGA-E8-A242 TCGA-E8-A2EA TCGA-E8-A3X7 
        3.35         2.30        40.18         1.12        22.29         1.48 
TCGA-E8-A413 TCGA-E8-A414 TCGA-E8-A415 TCGA-E8-A416 TCGA-E8-A432 TCGA-E8-A433 
        0.33         0.23         0.16         0.72         0.53         0.16 
TCGA-E8-A434 TCGA-E8-A436 TCGA-E8-A437 TCGA-E8-A44K TCGA-E8-A44M TCGA-EL-A3CM 
        0.23         1.15         7.69         0.39         0.39        26.73 
TCGA-EL-A3CN TCGA-EL-A3CO TCGA-EL-A3CP TCGA-EL-A3CR TCGA-EL-A3CS TCGA-EL-A3CU 
      155.54        97.74       158.83         7.66        45.53       157.15 
TCGA-EL-A3CV TCGA-EL-A3CW TCGA-EL-A3CY TCGA-EL-A3D1 TCGA-EL-A3D4 TCGA-EL-A3GP 
       37.94        57.01         4.18        74.27        45.40         1.41 
TCGA-EL-A3GQ TCGA-EL-A3GR TCGA-EL-A3GU TCGA-EL-A3H5 TCGA-EL-A3H7 TCGA-EL-A3MY 
       30.18       102.84       124.04        52.73       126.97        17.49 
TCGA-EL-A3MZ TCGA-EL-A3T0 TCGA-EL-A3T9 TCGA-EL-A3TA TCGA-EL-A3ZK TCGA-EL-A3ZL 
       52.47       130.72         5.72        66.90        31.46        50.30 
TCGA-EL-A3ZP TCGA-EL-A3ZS TCGA-EL-A4JW TCGA-EL-A4JZ TCGA-EL-A4K0 TCGA-EL-A4K1 
       52.50         7.04        19.27        37.94        19.00        19.59 
TCGA-EL-A4K4 TCGA-EM-A1CU TCGA-EM-A1YD TCGA-EM-A22P TCGA-EM-A2CU TCGA-EM-A2OX 
       33.60        20.91        57.01        11.15        13.12        19.73 
TCGA-EM-A2P0 TCGA-EM-A2P1 TCGA-EM-A2P3 TCGA-EM-A3AR TCGA-EM-A3FQ TCGA-EM-A3O3 
       17.59        17.46        14.60        16.77        16.18        14.50 
TCGA-EM-A4FM TCGA-EM-A4FO TCGA-ET-A25L TCGA-ET-A25M TCGA-ET-A2N0 TCGA-ET-A39J 
        4.80         8.35        14.79        12.33        16.08        71.01 
TCGA-ET-A39P TCGA-ET-A39S TCGA-ET-A3BN TCGA-ET-A3BT TCGA-ET-A3BU TCGA-ET-A3BV 
       58.72        55.10        28.24        24.72        38.30        42.21 
TCGA-ET-A3DQ TCGA-ET-A3DR TCGA-ET-A3DT TCGA-ET-A3DU TCGA-ET-A40Q TCGA-ET-A40T 
       59.87        43.50        17.98        25.32         7.17         2.10 
TCGA-ET-A4KN TCGA-FE-A22Z TCGA-FE-A237 TCGA-FE-A238 TCGA-FE-A3PB TCGA-FK-A3SE 
        4.01        59.15        81.34        39.95        85.12        21.99 
TCGA-FK-A3SH TCGA-FY-A3I4 TCGA-FY-A3R6 TCGA-FY-A3R7 TCGA-FY-A3YR TCGA-FY-A40K 
       48.10         1.12         0.76         0.03         6.84         4.14 
TCGA-FY-A40L TCGA-FY-A40M TCGA-FY-A4B3 TCGA-GE-A2C6 TCGA-H2-A26U TCGA-IM-A3U2 
        6.54         4.54         1.35        12.53        10.98        10.26 
TCGA-IM-A4EB TCGA-J8-A3O2 TCGA-J8-A3YD TCGA-J8-A3YF TCGA-J8-A3YG TCGA-J8-A42S 
        8.65         1.35        31.82        24.69        22.29         2.47 
TCGA-J8-A4HW TCGA-KS-A4I3 TCGA-KS-A4IC TCGA-L6-A4EU TCGA-MK-A4N6 
        2.60        12.03        14.70         0.72        16.60 

subtype1 subtype2 subtype3 
    0.23     0.07     0.03 
subtype1 subtype2 subtype3 
  132.36   147.75   158.83 
subtype1 subtype2 subtype3 
   14.14    15.62    12.03 
[1] "0.2 - 132.4 (14.1)" "0.1 - 147.8 (15.6)" "0.0 - 158.8 (12.0)"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [19] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [37] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [49] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [55] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [61] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [73] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
 [79] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [85] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [97] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[103] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[115] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[127] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[133] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[139] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[145] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[151] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[175] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[181] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[187] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[193] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[199] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[205] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[211] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[217] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[223] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[229] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[235] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[241] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[247] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[253] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[259] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[265] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[271] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[277] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[283] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[289] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[295] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[301] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[307] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[313] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[319] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[325] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[331] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[337] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[343] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[349] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[355] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[361] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[367] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[373] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[379] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[385] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[391] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[397] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[403] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[409] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[415] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[421] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[427] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[433] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[439] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[445] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[451] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[457] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[463] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[469] "subtype3" "subtype2" "subtype2"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [19] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [37] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [49] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [55] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [61] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [73] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
 [79] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [85] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [97] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[103] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[115] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[127] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[133] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[139] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[145] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[151] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[175] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[181] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[187] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[193] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[199] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[205] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[211] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[217] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[223] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[229] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[235] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[241] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[247] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[253] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[259] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[265] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[271] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[277] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[283] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[289] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[295] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[301] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[307] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[313] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[319] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[325] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[331] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[337] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[343] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[349] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[355] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[361] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[367] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[373] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[379] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[385] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[391] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[397] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[403] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[409] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[415] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[421] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[427] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[433] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[439] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[445] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[451] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[457] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[463] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[469] "subtype3" "subtype2" "subtype2"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [19] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [37] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [49] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [55] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [61] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [73] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
 [79] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [85] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [97] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[103] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[115] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[127] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[133] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[139] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[145] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[151] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[175] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[181] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[187] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[193] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[199] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[205] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[211] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[217] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[223] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[229] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[235] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[241] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[247] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[253] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[259] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[265] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[271] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[277] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[283] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[289] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[295] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[301] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[307] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[313] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[319] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[325] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[331] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[337] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[343] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[349] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[355] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[361] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[367] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[373] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[379] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[385] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[391] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[397] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[403] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[409] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[415] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[421] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[427] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[433] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[439] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[445] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[451] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[457] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[463] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[469] "subtype3" "subtype2" "subtype2"
D7V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV STAGE IVA STAGE IVC
  subtype1      88       28        20        1         4         2
  subtype2      99       17        35        0        16         2
  subtype3      83        5        51        1        21         1
D7V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 41 65 36  2
  subtype2 44 61 57  7
  subtype3 53 34 64 10
D7V4, multiclass
D7V5, binary
          cls
clus        0  1
  subtype1 90 27
  subtype2 67 89
  subtype3 59 97
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   90   27
  subtype2   67   89
  subtype3   59   97
   clus
vv  subtype1 subtype2 subtype3
  0       90       67       59
  1       27       89       97
          vv
clus        M0  M1  MX
  subtype1  58   3  82
  subtype2  91   4  74
  subtype3 109   1  53
D7V6, multiclass
D7V7, binary
          cls
clus         0   1
  subtype1 103  41
  subtype2 125  44
  subtype3 122  41
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  103   41
  subtype2  125   44
  subtype3  122   41
        clus
vv       subtype1 subtype2 subtype3
  FEMALE      103      125      122
  MALE         41       44       41
          vv
clus       OTHER  SPECIFY THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL
  subtype1              2                                            60
  subtype2              3                                           145
  subtype3              4                                           128
          vv
clus       THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED)
  subtype1                                                                     82
  subtype2                                                                      9
  subtype3                                                                      8
          vv
clus       THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES)
  subtype1                                                                   0
  subtype2                                                                  12
  subtype3                                                                  23
D7V8, multiclass
D7V9, binary
          cls
clus         0   1
  subtype1   4 140
  subtype2   7 162
  subtype3   3 160
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    4  140
  subtype2    7  162
  subtype3    3  160
     clus
vv    subtype1 subtype2 subtype3
  NO         4        7        3
  YES      140      162      160
D7V10, binary
          cls
clus         0   1
  subtype1 122   5
  subtype2 141   6
  subtype3 138   6
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  122    5
  subtype2  141    6
  subtype3  138    6
     clus
vv    subtype1 subtype2 subtype3
  NO       122      141      138
  YES        5        6        6
          vv
clus       MINIMAL (T3) MODERATE/ADVANCED (T4A) NONE VERY ADVANCED (T4B)
  subtype1           14                       0  126                   0
  subtype2           52                       5  107                   0
  subtype3           57                      10   89                   1
D7V11, multiclass
          vv
clus        R0  R1  R2  RX
  subtype1 116   9   0   9
  subtype2 135  14   2   8
  subtype3 119  23   1  11
D7V12, multiclass
D7V13, continuous
D7V14, binary
          cls
clus        0  1
  subtype1 61 78
  subtype2 75 90
  subtype3 78 84
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   61   78
  subtype2   75   90
  subtype3   78   84
            clus
vv           subtype1 subtype2 subtype3
  MULTIFOCAL       61       75       78
  UNIFOCAL         78       90       84
D7V15, continuous

Clustering(8) Variable = MIRSEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2        0   1
  subtype1 149   1
  subtype2 121   3
  subtype3 188   9
subtype1 subtype2 subtype3 
     150      124      197 
subtype1 subtype2 subtype3 
       1        3        9 
$subtype1
TCGA-BJ-A0Z3 TCGA-BJ-A0Z5 TCGA-BJ-A0Z9 TCGA-BJ-A0ZJ TCGA-BJ-A28R TCGA-BJ-A290 
       16.34        14.73         8.25        17.69         4.87        20.58 
TCGA-BJ-A45J TCGA-BJ-A4O9 TCGA-CE-A13K TCGA-CE-A3ME TCGA-CE-A482 TCGA-CE-A483 
        5.06         5.95         0.53         0.23         0.07         0.10 
TCGA-DE-A0XZ TCGA-DE-A0Y2 TCGA-DE-A0Y3 TCGA-DE-A3KN TCGA-DE-A4MD TCGA-DJ-A13P 
       20.22        15.42        36.46        15.85        12.00       138.05 
TCGA-DJ-A13T TCGA-DJ-A13U TCGA-DJ-A13X TCGA-DJ-A1QF TCGA-DJ-A1QI TCGA-DJ-A1QN 
       24.92        12.92         7.99        18.05        15.02         8.98 
TCGA-DJ-A2PO TCGA-DJ-A2PQ TCGA-DJ-A2PR TCGA-DJ-A2PU TCGA-DJ-A2PW TCGA-DJ-A2PX 
        7.96        20.48        10.45        10.26         7.69         5.03 
TCGA-DJ-A2Q4 TCGA-DJ-A2Q5 TCGA-DJ-A2Q7 TCGA-DJ-A2QC TCGA-DJ-A3UK TCGA-DJ-A3UN 
        9.44         9.90         9.57         9.99         8.25        12.49 
TCGA-DJ-A3UO TCGA-DJ-A3UR TCGA-DJ-A3V2 TCGA-DJ-A3V3 TCGA-DJ-A3V7 TCGA-DJ-A3VA 
       15.78        23.70         7.40        17.75         9.83        11.93 
TCGA-DJ-A3VE TCGA-DJ-A3VL TCGA-DJ-A4UL TCGA-DJ-A4V2 TCGA-DO-A1K0 TCGA-E3-A3DY 
        4.41        17.19        11.93         3.09        21.53        31.07 
TCGA-E3-A3E2 TCGA-E3-A3E3 TCGA-E3-A3E5 TCGA-E8-A417 TCGA-E8-A418 TCGA-E8-A438 
       63.16        30.28        14.04         0.26         1.48         6.90 
TCGA-EL-A3CL TCGA-EL-A3GS TCGA-EL-A3GX TCGA-EL-A3GY TCGA-EL-A3H4 TCGA-EL-A3MW 
       31.63        65.39       147.75       101.13        38.66       108.66 
TCGA-EL-A3N2 TCGA-EL-A3T3 TCGA-EL-A3T6 TCGA-EL-A3T7 TCGA-EL-A3T8 TCGA-EL-A3TB 
       12.16       116.91        98.20        41.29        95.38        82.82 
TCGA-EL-A3ZG TCGA-EL-A3ZQ TCGA-EL-A3ZT TCGA-EL-A4K7 TCGA-EL-A4K9 TCGA-EL-A4KD 
       77.33        45.53        44.61        41.13        37.78        29.95 
TCGA-EL-A4KH TCGA-EM-A1CS TCGA-EM-A1CT TCGA-EM-A1CU TCGA-EM-A1CV TCGA-EM-A22O 
       11.87        26.86        18.18        20.91        12.36        11.74 
TCGA-EM-A2CS TCGA-EM-A2OZ TCGA-EM-A3AK TCGA-EM-A3AN TCGA-EM-A3AO TCGA-EM-A3AQ 
       15.16        12.07        15.68        19.63        13.38        16.44 
TCGA-EM-A3FJ TCGA-EM-A3FK TCGA-EM-A3FO TCGA-EM-A3O7 TCGA-EM-A3SX TCGA-EM-A4FV 
       27.95        23.77        17.49         7.33        15.62        12.72 
TCGA-ET-A25J TCGA-ET-A25K TCGA-ET-A25N TCGA-ET-A25O TCGA-ET-A2MX TCGA-ET-A2MZ 
       29.69        32.35        14.79        27.09        54.02        12.26 
TCGA-ET-A2N1 TCGA-ET-A2N4 TCGA-ET-A39J TCGA-ET-A39K TCGA-ET-A39L TCGA-ET-A39T 
       29.19         2.66        71.01        72.49        65.33        59.15 
TCGA-ET-A3BO TCGA-ET-A3BP TCGA-ET-A3BQ TCGA-ET-A3BS TCGA-ET-A3BX TCGA-ET-A3DP 
        5.82         4.18         2.43         5.52         4.50        56.88 
TCGA-ET-A3DW TCGA-ET-A40R TCGA-ET-A40S TCGA-FE-A230 TCGA-FE-A231 TCGA-FE-A232 
       24.69         4.80         5.00        59.70        31.59        44.25 
TCGA-FE-A233 TCGA-FE-A235 TCGA-FE-A236 TCGA-FE-A238 TCGA-FE-A23A TCGA-FE-A3PA 
       24.69       102.90        66.77        39.95        81.83        94.42 
TCGA-FE-A3PC TCGA-FE-A3PD TCGA-FK-A3S3 TCGA-FK-A3SB TCGA-FK-A3SG TCGA-FK-A3SH 
       85.64        78.77        46.06         4.08         0.92        48.10 
TCGA-FK-A4UB TCGA-FY-A3BL TCGA-FY-A3ON TCGA-FY-A3RA TCGA-FY-A40N TCGA-FY-A4B4 
       91.13         1.15         1.51        18.08         0.89         1.15 
TCGA-H2-A3RI TCGA-H2-A422 TCGA-IM-A3ED TCGA-J8-A3YE TCGA-J8-A3YH TCGA-J8-A4HW 
        2.96         2.89        47.41        27.81         5.72         2.60 
TCGA-J8-A4HY TCGA-KS-A41F TCGA-KS-A41J TCGA-KS-A4I1 TCGA-KS-A4I5 TCGA-KS-A4I7 
        0.20       120.99        15.68         5.98         6.71        12.36 
TCGA-KS-A4IB TCGA-L6-A4EP TCGA-L6-A4EQ TCGA-L6-A4ET TCGA-MK-A4N7 TCGA-MK-A4N9 
       64.54         0.59        11.87         1.12        14.47         8.71 

$subtype2
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0ZA TCGA-BJ-A0ZC TCGA-BJ-A0ZE 
       24.79        13.78        18.21        18.87        11.57        16.73 
TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A191 TCGA-BJ-A192 TCGA-BJ-A28V TCGA-BJ-A45C 
       23.34        20.58         4.80         8.09         5.10         5.72 
TCGA-BJ-A45D TCGA-BJ-A45F TCGA-BJ-A45G TCGA-BJ-A45K TCGA-CE-A484 TCGA-DE-A2OL 
        6.48         3.45         6.35         8.98         0.39         5.98 
TCGA-DE-A4M9 TCGA-DJ-A13M TCGA-DJ-A13R TCGA-DJ-A13S TCGA-DJ-A13W TCGA-DJ-A1QG 
        4.87         9.01         3.02         8.71        14.93         6.97 
TCGA-DJ-A1QL TCGA-DJ-A2PP TCGA-DJ-A2Q0 TCGA-DJ-A2Q2 TCGA-DJ-A2QB TCGA-DJ-A3UP 
        6.97         5.00         8.12         6.77        10.85         5.49 
TCGA-DJ-A3US TCGA-DJ-A3UT TCGA-DJ-A3VG TCGA-DJ-A3VM TCGA-DJ-A4UR TCGA-DO-A1JZ 
       20.71        15.42         8.32        15.81        10.98        54.90 
TCGA-E3-A3DZ TCGA-E3-A3E0 TCGA-EL-A3CX TCGA-EL-A3CZ TCGA-EL-A3D5 TCGA-EL-A3GO 
       12.07        66.35        80.91        58.78        33.44        39.32 
TCGA-EL-A3GW TCGA-EL-A3H1 TCGA-EL-A3H2 TCGA-EL-A3T2 TCGA-EL-A3ZH TCGA-EL-A3ZR 
       37.25        49.32        33.47        32.48        78.97        48.16 
TCGA-EL-A4JV TCGA-EL-A4K2 TCGA-EL-A4K6 TCGA-EL-A4KI TCGA-EM-A1CW TCGA-EM-A1YA 
       45.80        19.53        28.73         8.68        18.05        19.79 
TCGA-EM-A1YB TCGA-EM-A1YC TCGA-EM-A1YE TCGA-EM-A22J TCGA-EM-A22K TCGA-EM-A22L 
       19.46        54.21        54.08        14.47        15.72        10.45 
TCGA-EM-A22N TCGA-EM-A22Q TCGA-EM-A2CJ TCGA-EM-A2CK TCGA-EM-A2CL TCGA-EM-A2CN 
       10.65        14.20        16.44        17.85        13.18        23.51 
TCGA-EM-A2CO TCGA-EM-A2CP TCGA-EM-A2CQ TCGA-EM-A2CR TCGA-EM-A2CT TCGA-EM-A2OV 
        6.02         2.96        12.30        13.64        10.49        22.16 
TCGA-EM-A2OW TCGA-EM-A2OY TCGA-EM-A2P2 TCGA-EM-A3AI TCGA-EM-A3AJ TCGA-EM-A3AL 
       13.84        17.59        17.29        17.46        18.94        14.14 
TCGA-EM-A3AP TCGA-EM-A3FL TCGA-EM-A3FN TCGA-EM-A3FP TCGA-EM-A3FR TCGA-EM-A3O6 
        8.35        16.77        12.07        17.39        15.02        11.15 
TCGA-EM-A3O8 TCGA-EM-A3O9 TCGA-EM-A3OA TCGA-EM-A3OB TCGA-EM-A3ST TCGA-EM-A3SY 
       12.53         9.24        13.91         7.82        11.51        13.51 
TCGA-EM-A4FH TCGA-EM-A4FK TCGA-EM-A4FR TCGA-EM-A4FU TCGA-EM-A4G1 TCGA-ET-A25I 
       16.90         8.98         5.03        37.87         0.95        48.20 
TCGA-ET-A25P TCGA-ET-A2N3 TCGA-ET-A2N5 TCGA-ET-A39I TCGA-ET-A39N TCGA-ET-A3BW 
       18.35        19.76        58.22        13.74        98.56         2.37 
TCGA-ET-A3DS TCGA-ET-A3DV TCGA-ET-A40P TCGA-ET-A4KQ TCGA-FE-A239 TCGA-FK-A3SD 
        0.30       132.36         3.22         1.94        33.63         0.89 
TCGA-FY-A2QD TCGA-FY-A3I5 TCGA-FY-A3NM TCGA-FY-A3NP TCGA-FY-A3R9 TCGA-FY-A3W9 
        1.25         1.64         0.99        16.14        16.57         0.76 
TCGA-FY-A3WA TCGA-FY-A40M TCGA-H2-A2K9 TCGA-H2-A3RH TCGA-IM-A41Z TCGA-J8-A3O0 
        0.95         4.54        11.31        12.46         9.63        43.17 
TCGA-J8-A3O1 TCGA-KS-A41I TCGA-KS-A41L TCGA-KS-A4ID 
       27.19        15.95        86.70        20.48 

$subtype3
TCGA-BJ-A0ZB TCGA-BJ-A0ZG TCGA-BJ-A0ZH TCGA-BJ-A28T TCGA-BJ-A28W TCGA-BJ-A28X 
        4.01         7.56        15.12         2.76         1.12        17.49 
TCGA-BJ-A28Z TCGA-BJ-A291 TCGA-BJ-A2NA TCGA-BJ-A3PR TCGA-BJ-A3PT TCGA-BJ-A3PU 
        1.22        14.50         2.10         8.02        12.07        10.03 
TCGA-BJ-A45E TCGA-BJ-A45H TCGA-BJ-A45I TCGA-BJ-A4O8 TCGA-CE-A27D TCGA-CE-A3MD 
        0.03         7.79         6.15         4.93         0.10         0.20 
TCGA-CE-A481 TCGA-CE-A485 TCGA-DE-A4M8 TCGA-DE-A4MA TCGA-DE-A4MB TCGA-DE-A4MC 
        0.10         0.10         6.08        16.64        11.57        17.39 
TCGA-DJ-A13O TCGA-DJ-A1QD TCGA-DJ-A1QE TCGA-DJ-A1QH TCGA-DJ-A1QM TCGA-DJ-A1QO 
        7.07        10.98        99.98         7.99         0.99         1.02 
TCGA-DJ-A1QQ TCGA-DJ-A2PN TCGA-DJ-A2PS TCGA-DJ-A2PT TCGA-DJ-A2PV TCGA-DJ-A2PY 
        5.95        10.06         1.94         9.60         7.96         8.78 
TCGA-DJ-A2PZ TCGA-DJ-A2Q1 TCGA-DJ-A2Q3 TCGA-DJ-A2Q6 TCGA-DJ-A2Q8 TCGA-DJ-A2Q9 
        8.42         9.34         9.21         8.61         7.07        10.36 
TCGA-DJ-A2QA TCGA-DJ-A3UM TCGA-DJ-A3UQ TCGA-DJ-A3UU TCGA-DJ-A3UW TCGA-DJ-A3UX 
       12.43        17.23         9.11        17.69        43.00        11.34 
TCGA-DJ-A3UY TCGA-DJ-A3UZ TCGA-DJ-A3V0 TCGA-DJ-A3V4 TCGA-DJ-A3V5 TCGA-DJ-A3V8 
       13.32        12.76        25.02        14.56         7.86         8.52 
TCGA-DJ-A3V9 TCGA-DJ-A3VB TCGA-DJ-A3VD TCGA-DJ-A3VF TCGA-DJ-A3VJ TCGA-DJ-A4UQ 
        7.13        11.21        11.51         7.73        17.36        10.78 
TCGA-DJ-A4UT TCGA-DJ-A4UW TCGA-DJ-A4V0 TCGA-DJ-A4V4 TCGA-DJ-A4V5 TCGA-DO-A2HM 
       12.20         9.44         9.34         3.35        16.14         2.30 
TCGA-E3-A3E1 TCGA-E8-A242 TCGA-E8-A2EA TCGA-E8-A3X7 TCGA-E8-A413 TCGA-E8-A414 
       40.18         1.12        22.29         1.48         0.33         0.23 
TCGA-E8-A415 TCGA-E8-A416 TCGA-E8-A432 TCGA-E8-A433 TCGA-E8-A434 TCGA-E8-A436 
        0.16         0.72         0.53         0.16         0.23         1.15 
TCGA-E8-A437 TCGA-E8-A44K TCGA-E8-A44M TCGA-EL-A3CM TCGA-EL-A3CN TCGA-EL-A3CO 
        7.69         0.39         0.39        26.73       155.54        97.74 
TCGA-EL-A3CP TCGA-EL-A3CR TCGA-EL-A3CS TCGA-EL-A3CT TCGA-EL-A3CU TCGA-EL-A3CV 
      158.83         7.66        45.53        60.95       157.15        37.94 
TCGA-EL-A3CW TCGA-EL-A3CY TCGA-EL-A3D1 TCGA-EL-A3D4 TCGA-EL-A3D6 TCGA-EL-A3GP 
       57.01         4.18        74.27        45.40       108.36         1.41 
TCGA-EL-A3GQ TCGA-EL-A3GR TCGA-EL-A3GU TCGA-EL-A3GV TCGA-EL-A3H5 TCGA-EL-A3H7 
       30.18       102.84       124.04        50.37        52.73       126.97 
TCGA-EL-A3H8 TCGA-EL-A3MY TCGA-EL-A3MZ TCGA-EL-A3N3 TCGA-EL-A3T0 TCGA-EL-A3T1 
      131.15        17.49        52.47       147.42       130.72       129.57 
TCGA-EL-A3T9 TCGA-EL-A3TA TCGA-EL-A3ZK TCGA-EL-A3ZL TCGA-EL-A3ZP TCGA-EL-A3ZS 
        5.72        66.90        31.46        50.30        52.50         7.04 
TCGA-EL-A4JW TCGA-EL-A4JX TCGA-EL-A4JZ TCGA-EL-A4K0 TCGA-EL-A4K1 TCGA-EL-A4K4 
       19.27        45.96        37.94        19.00        19.59        33.60 
TCGA-EL-A4KG TCGA-EM-A1YD TCGA-EM-A22I TCGA-EM-A22M TCGA-EM-A22P TCGA-EM-A2CU 
       13.32        57.01        14.70        14.50        11.15        13.12 
TCGA-EM-A2OX TCGA-EM-A2P0 TCGA-EM-A2P1 TCGA-EM-A2P3 TCGA-EM-A3AR TCGA-EM-A3FM 
       19.73        17.59        17.46        14.60        16.77        21.01 
TCGA-EM-A3FQ TCGA-EM-A3O3 TCGA-EM-A3SU TCGA-EM-A3SZ TCGA-EM-A4FF TCGA-EM-A4FM 
       16.18        14.50        16.41        12.79        70.62         4.80 
TCGA-EM-A4FN TCGA-EM-A4FO TCGA-EM-A4FQ TCGA-ET-A25G TCGA-ET-A25L TCGA-ET-A25M 
        8.58         8.35         9.80        47.47        14.79        12.33 
TCGA-ET-A25R TCGA-ET-A2MY TCGA-ET-A2N0 TCGA-ET-A39M TCGA-ET-A39O TCGA-ET-A39P 
       20.42        22.09        16.08        84.89        61.02        58.72 
TCGA-ET-A39R TCGA-ET-A39S TCGA-ET-A3BN TCGA-ET-A3BT TCGA-ET-A3BU TCGA-ET-A3BV 
       57.11        55.10        28.24        24.72        38.30        42.21 
TCGA-ET-A3DO TCGA-ET-A3DQ TCGA-ET-A3DR TCGA-ET-A3DT TCGA-ET-A3DU TCGA-ET-A40Q 
       80.81        59.87        43.50        17.98        25.32         7.17 
TCGA-ET-A40T TCGA-ET-A4KN TCGA-FE-A22Z TCGA-FE-A234 TCGA-FE-A237 TCGA-FE-A3PB 
        2.10         4.01        59.15        68.22        81.34        85.12 
TCGA-FK-A3SE TCGA-FY-A3I4 TCGA-FY-A3R6 TCGA-FY-A3R7 TCGA-FY-A3R8 TCGA-FY-A3YR 
       21.99         1.12         0.76         0.03         4.64         6.84 
TCGA-FY-A40K TCGA-FY-A40L TCGA-FY-A4B3 TCGA-GE-A2C6 TCGA-H2-A26U TCGA-H2-A421 
        4.14         6.54         1.35        12.53        10.98         2.20 
TCGA-IM-A3EB TCGA-IM-A3U2 TCGA-IM-A3U3 TCGA-IM-A41Y TCGA-IM-A420 TCGA-IM-A4EB 
       48.92        10.26        16.87         9.80         2.96         8.65 
TCGA-J8-A3NZ TCGA-J8-A3O2 TCGA-J8-A3YD TCGA-J8-A3YF TCGA-J8-A3YG TCGA-J8-A42S 
        2.24         1.35        31.82        24.69        22.29         2.47 
TCGA-KS-A4I3 TCGA-KS-A4I9 TCGA-KS-A4IC TCGA-L6-A4EU TCGA-MK-A4N6 
       12.03        17.42        14.70         0.72        16.60 

subtype1 subtype2 subtype3 
    0.07     0.30     0.03 
subtype1 subtype2 subtype3 
  147.75   132.36   158.83 
subtype1 subtype2 subtype3 
  15.650   13.875   12.760 
[1] "0.1 - 147.8 (15.6)" "0.3 - 132.4 (13.9)" "0.0 - 158.8 (12.8)"
  [1] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [19] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [37] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [61] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
 [67] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
 [73] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [79] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [85] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [91] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [97] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[103] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[115] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[127] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[133] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[139] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[145] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[151] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[175] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[187] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[193] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[199] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[205] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[211] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[217] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[223] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[229] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[235] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[241] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[247] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[253] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[259] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[265] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[271] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[277] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[283] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[289] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[295] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[301] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[307] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[313] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[319] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[325] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[331] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[337] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[343] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[349] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[355] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[361] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[367] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[373] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[379] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[385] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[391] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[397] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[403] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[409] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[415] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[421] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[427] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[433] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[439] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[445] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[451] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[457] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[463] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[469] "subtype3" "subtype1" "subtype1"
  [1] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [19] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [37] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [61] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
 [67] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
 [73] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [79] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [85] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [91] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [97] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[103] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[115] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[127] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[133] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[139] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[145] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[151] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[175] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[187] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[193] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[199] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[205] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[211] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[217] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[223] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[229] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[235] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[241] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[247] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[253] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[259] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[265] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[271] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[277] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[283] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[289] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[295] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[301] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[307] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[313] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[319] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[325] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[331] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[337] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[343] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[349] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[355] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[361] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[367] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[373] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[379] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[385] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[391] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[397] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[403] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[409] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[415] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[421] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[427] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[433] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[439] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[445] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[451] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[457] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[463] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[469] "subtype3" "subtype1" "subtype1"
  [1] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [19] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [37] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [61] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
 [67] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
 [73] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [79] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [85] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [91] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [97] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[103] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[115] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[127] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[133] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[139] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[145] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[151] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[175] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[187] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[193] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[199] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[205] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[211] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[217] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[223] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[229] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[235] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[241] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[247] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[253] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[259] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[265] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[271] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[277] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[283] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[289] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[295] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[301] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[307] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[313] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[319] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[325] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[331] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[337] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[343] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[349] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[355] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[361] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[367] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[373] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[379] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[385] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[391] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[397] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[403] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[409] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[415] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[421] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[427] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[433] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[439] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[445] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[451] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[457] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[463] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[469] "subtype3" "subtype1" "subtype1"
D8V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV STAGE IVA STAGE IVC
  subtype1      92       17        26        0        14         2
  subtype2      73       27        19        1         2         2
  subtype3     105        6        61        1        25         1
D8V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 36 62 46  7
  subtype2 40 54 30  1
  subtype3 62 44 81 11
D8V4, multiclass
D8V5, binary
          cls
clus         0   1
  subtype1  62  80
  subtype2  82  17
  subtype3  72 116
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   62   80
  subtype2   82   17
  subtype3   72  116
   clus
vv  subtype1 subtype2 subtype3
  0       62       82       72
  1       80       17      116
          vv
clus        M0  M1  MX
  subtype1  82   4  65
  subtype2  48   3  73
  subtype3 128   1  71
D8V6, multiclass
D8V7, binary
          cls
clus         0   1
  subtype1 108  43
  subtype2  91  34
  subtype3 151  49
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  108   43
  subtype2   91   34
  subtype3  151   49
        clus
vv       subtype1 subtype2 subtype3
  FEMALE      108       91      151
  MALE         43       34       49
          vv
clus       OTHER  SPECIFY THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL
  subtype1              2                                           130
  subtype2              2                                            47
  subtype3              5                                           156
          vv
clus       THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED)
  subtype1                                                                     13
  subtype2                                                                     76
  subtype3                                                                     10
          vv
clus       THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES)
  subtype1                                                                   6
  subtype2                                                                   0
  subtype3                                                                  29
D8V8, multiclass
D8V9, binary
          cls
clus         0   1
  subtype1   9 142
  subtype2   2 123
  subtype3   3 197
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    9  142
  subtype2    2  123
  subtype3    3  197
     clus
vv    subtype1 subtype2 subtype3
  NO         9        2        3
  YES      142      123      197
D8V10, binary
          cls
clus         0   1
  subtype1 126   5
  subtype2 106   5
  subtype3 169   7
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  126    5
  subtype2  106    5
  subtype3  169    7
     clus
vv    subtype1 subtype2 subtype3
  NO       126      106      169
  YES        5        5        7
          vv
clus       MINIMAL (T3) MODERATE/ADVANCED (T4A) NONE VERY ADVANCED (T4B)
  subtype1           36                       4  106                   0
  subtype2           12                       0  110                   0
  subtype3           75                      11  106                   1
D8V11, multiclass
          vv
clus        R0  R1  R2  RX
  subtype1 122  11   1   8
  subtype2 101   9   0   6
  subtype3 147  26   2  14
D8V12, multiclass
D8V13, continuous
D8V14, binary
          cls
clus         0   1
  subtype1  67  80
  subtype2  57  65
  subtype3  90 107
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   67   80
  subtype2   57   65
  subtype3   90  107
            clus
vv           subtype1 subtype2 subtype3
  MULTIFOCAL       67       57       90
  UNIFOCAL         80       65      107
D8V15, continuous

Clustering(9) Variable = MIRSEQ_MATURE_CNMF
D9V1, survival
          sevent
clus2        0   1
  subtype1 153   3
  subtype2 162   1
  subtype3 143   9
subtype1 subtype2 subtype3 
     156      163      152 
subtype1 subtype2 subtype3 
       3        1        9 
$subtype1
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0Z5 TCGA-BJ-A0ZA TCGA-BJ-A0ZC 
       24.79        13.78        18.21        14.73        18.87        11.57 
TCGA-BJ-A0ZE TCGA-BJ-A0ZG TCGA-BJ-A0ZJ TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A191 
       16.73         7.56        17.69        23.34        20.58         4.80 
TCGA-BJ-A192 TCGA-BJ-A28V TCGA-BJ-A28W TCGA-BJ-A45C TCGA-BJ-A45D TCGA-BJ-A45F 
        8.09         5.10         1.12         5.72         6.48         3.45 
TCGA-BJ-A45G TCGA-BJ-A45K TCGA-CE-A484 TCGA-DE-A2OL TCGA-DE-A3KN TCGA-DE-A4M9 
        6.35         8.98         0.39         5.98        15.85         4.87 
TCGA-DE-A4MD TCGA-DJ-A13M TCGA-DJ-A13P TCGA-DJ-A13R TCGA-DJ-A13S TCGA-DJ-A13T 
       12.00         9.01       138.05         3.02         8.71        24.92 
TCGA-DJ-A13W TCGA-DJ-A13X TCGA-DJ-A1QG TCGA-DJ-A1QL TCGA-DJ-A2PP TCGA-DJ-A2Q0 
       14.93         7.99         6.97         6.97         5.00         8.12 
TCGA-DJ-A2Q2 TCGA-DJ-A2QA TCGA-DJ-A2QB TCGA-DJ-A3UP TCGA-DJ-A3US TCGA-DJ-A3UT 
        6.77        12.43        10.85         5.49        20.71        15.42 
TCGA-DJ-A3UZ TCGA-DJ-A3VG TCGA-DJ-A3VL TCGA-DJ-A3VM TCGA-DJ-A4UR TCGA-DO-A1JZ 
       12.76         8.32        17.19        15.81        10.98        54.90 
TCGA-E3-A3DZ TCGA-E3-A3E0 TCGA-E3-A3E5 TCGA-EL-A3CX TCGA-EL-A3CZ TCGA-EL-A3D4 
       12.07        66.35        14.04        80.91        58.78        45.40 
TCGA-EL-A3D5 TCGA-EL-A3GO TCGA-EL-A3GS TCGA-EL-A3GV TCGA-EL-A3GW TCGA-EL-A3H1 
       33.44        39.32        65.39        50.37        37.25        49.32 
TCGA-EL-A3H2 TCGA-EL-A3T2 TCGA-EL-A3ZH TCGA-EL-A3ZR TCGA-EL-A4JV TCGA-EL-A4K2 
       33.47        32.48        78.97        48.16        45.80        19.53 
TCGA-EL-A4K6 TCGA-EL-A4KD TCGA-EL-A4KI TCGA-EM-A1CS TCGA-EM-A1CV TCGA-EM-A1CW 
       28.73        29.95         8.68        26.86        12.36        18.05 
TCGA-EM-A1YA TCGA-EM-A1YB TCGA-EM-A1YC TCGA-EM-A1YE TCGA-EM-A22J TCGA-EM-A22K 
       19.79        19.46        54.21        54.08        14.47        15.72 
TCGA-EM-A22L TCGA-EM-A22N TCGA-EM-A22O TCGA-EM-A22Q TCGA-EM-A2CJ TCGA-EM-A2CK 
       10.45        10.65        11.74        14.20        16.44        17.85 
TCGA-EM-A2CL TCGA-EM-A2CN TCGA-EM-A2CO TCGA-EM-A2CP TCGA-EM-A2CQ TCGA-EM-A2CR 
       13.18        23.51         6.02         2.96        12.30        13.64 
TCGA-EM-A2CT TCGA-EM-A2OV TCGA-EM-A2OW TCGA-EM-A2OY TCGA-EM-A2P0 TCGA-EM-A2P2 
       10.49        22.16        13.84        17.59        17.59        17.29 
TCGA-EM-A3AI TCGA-EM-A3AJ TCGA-EM-A3AL TCGA-EM-A3AP TCGA-EM-A3FL TCGA-EM-A3FN 
       17.46        18.94        14.14         8.35        16.77        12.07 
TCGA-EM-A3FP TCGA-EM-A3FR TCGA-EM-A3O6 TCGA-EM-A3O8 TCGA-EM-A3O9 TCGA-EM-A3OA 
       17.39        15.02        11.15        12.53         9.24        13.91 
TCGA-EM-A3OB TCGA-EM-A3ST TCGA-EM-A3SX TCGA-EM-A3SY TCGA-EM-A4FH TCGA-EM-A4FK 
        7.82        11.51        15.62        13.51        16.90         8.98 
TCGA-EM-A4FR TCGA-EM-A4FU TCGA-EM-A4G1 TCGA-ET-A25I TCGA-ET-A25P TCGA-ET-A2MZ 
        5.03        37.87         0.95        48.20        18.35        12.26 
TCGA-ET-A2N1 TCGA-ET-A2N3 TCGA-ET-A2N4 TCGA-ET-A2N5 TCGA-ET-A39I TCGA-ET-A39L 
       29.19        19.76         2.66        58.22        13.74        65.33 
TCGA-ET-A39N TCGA-ET-A3BP TCGA-ET-A3BQ TCGA-ET-A3BW TCGA-ET-A3DP TCGA-ET-A3DR 
       98.56         4.18         2.43         2.37        56.88        43.50 
TCGA-ET-A3DS TCGA-ET-A3DV TCGA-ET-A40P TCGA-ET-A40R TCGA-ET-A4KQ TCGA-FE-A236 
        0.30       132.36         3.22         4.80         1.94        66.77 
TCGA-FE-A239 TCGA-FK-A3S3 TCGA-FK-A3SD TCGA-FY-A2QD TCGA-FY-A3I5 TCGA-FY-A3NM 
       33.63        46.06         0.89         1.25         1.64         0.99 
TCGA-FY-A3NP TCGA-FY-A3R9 TCGA-FY-A3W9 TCGA-FY-A3WA TCGA-H2-A2K9 TCGA-H2-A3RH 
       16.14        16.57         0.76         0.95        11.31        12.46 
TCGA-IM-A41Z TCGA-J8-A3O0 TCGA-J8-A3O1 TCGA-KS-A41I TCGA-KS-A41L TCGA-KS-A4IB 
        9.63        43.17        27.19        15.95        86.70        64.54 

$subtype2
TCGA-BJ-A0Z3 TCGA-BJ-A0Z9 TCGA-BJ-A0ZH TCGA-BJ-A28R TCGA-BJ-A28Z TCGA-BJ-A290 
       16.34         8.25        15.12         4.87         1.22        20.58 
TCGA-BJ-A3PU TCGA-BJ-A45J TCGA-BJ-A4O9 TCGA-CE-A13K TCGA-CE-A3ME TCGA-CE-A482 
       10.03         5.06         5.95         0.53         0.23         0.07 
TCGA-CE-A483 TCGA-DE-A0XZ TCGA-DE-A0Y2 TCGA-DE-A0Y3 TCGA-DE-A4MA TCGA-DE-A4MC 
        0.10        20.22        15.42        36.46        16.64        17.39 
TCGA-DJ-A13U TCGA-DJ-A1QI TCGA-DJ-A1QN TCGA-DJ-A1QO TCGA-DJ-A2PO TCGA-DJ-A2PQ 
       12.92        15.02         8.98         1.02         7.96        20.48 
TCGA-DJ-A2PR TCGA-DJ-A2PU TCGA-DJ-A2PW TCGA-DJ-A2PX TCGA-DJ-A2Q4 TCGA-DJ-A2Q5 
       10.45        10.26         7.69         5.03         9.44         9.90 
TCGA-DJ-A2Q7 TCGA-DJ-A2QC TCGA-DJ-A3UK TCGA-DJ-A3UN TCGA-DJ-A3UO TCGA-DJ-A3UR 
        9.57         9.99         8.25        12.49        15.78        23.70 
TCGA-DJ-A3V2 TCGA-DJ-A3V3 TCGA-DJ-A3V7 TCGA-DJ-A3V9 TCGA-DJ-A3VA TCGA-DJ-A3VB 
        7.40        17.75         9.83         7.13        11.93        11.21 
TCGA-DJ-A3VE TCGA-DJ-A4UL TCGA-DJ-A4V2 TCGA-DJ-A4V5 TCGA-DO-A1K0 TCGA-E3-A3DY 
        4.41        11.93         3.09        16.14        21.53        31.07 
TCGA-E3-A3E2 TCGA-E3-A3E3 TCGA-E8-A417 TCGA-E8-A418 TCGA-E8-A438 TCGA-EL-A3CL 
       63.16        30.28         0.26         1.48         6.90        31.63 
TCGA-EL-A3CN TCGA-EL-A3D6 TCGA-EL-A3GX TCGA-EL-A3GY TCGA-EL-A3H4 TCGA-EL-A3H8 
      155.54       108.36       147.75       101.13        38.66       131.15 
TCGA-EL-A3MW TCGA-EL-A3N2 TCGA-EL-A3T1 TCGA-EL-A3T3 TCGA-EL-A3T6 TCGA-EL-A3T7 
      108.66        12.16       129.57       116.91        98.20        41.29 
TCGA-EL-A3T8 TCGA-EL-A3TB TCGA-EL-A3ZG TCGA-EL-A3ZQ TCGA-EL-A3ZT TCGA-EL-A4JX 
       95.38        82.82        77.33        45.53        44.61        45.96 
TCGA-EL-A4K1 TCGA-EL-A4K7 TCGA-EL-A4K9 TCGA-EL-A4KG TCGA-EL-A4KH TCGA-EM-A1CT 
       19.59        41.13        37.78        13.32        11.87        18.18 
TCGA-EM-A22I TCGA-EM-A22M TCGA-EM-A2CS TCGA-EM-A2OZ TCGA-EM-A3AK TCGA-EM-A3AN 
       14.70        14.50        15.16        12.07        15.68        19.63 
TCGA-EM-A3AO TCGA-EM-A3AQ TCGA-EM-A3FJ TCGA-EM-A3FK TCGA-EM-A3FM TCGA-EM-A3FO 
       13.38        16.44        27.95        23.77        21.01        17.49 
TCGA-EM-A3O7 TCGA-EM-A3SU TCGA-EM-A3SZ TCGA-EM-A4FF TCGA-EM-A4FN TCGA-EM-A4FQ 
        7.33        16.41        12.79        70.62         8.58         9.80 
TCGA-EM-A4FV TCGA-ET-A25G TCGA-ET-A25J TCGA-ET-A25K TCGA-ET-A25N TCGA-ET-A25O 
       12.72        47.47        29.69        32.35        14.79        27.09 
TCGA-ET-A25R TCGA-ET-A2MX TCGA-ET-A2MY TCGA-ET-A39K TCGA-ET-A39M TCGA-ET-A39O 
       20.42        54.02        22.09        72.49        84.89        61.02 
TCGA-ET-A39R TCGA-ET-A39T TCGA-ET-A3BO TCGA-ET-A3BS TCGA-ET-A3BX TCGA-ET-A3DO 
       57.11        59.15         5.82         5.52         4.50        80.81 
TCGA-ET-A3DT TCGA-ET-A3DW TCGA-ET-A40S TCGA-FE-A230 TCGA-FE-A231 TCGA-FE-A232 
       17.98        24.69         5.00        59.70        31.59        44.25 
TCGA-FE-A233 TCGA-FE-A234 TCGA-FE-A235 TCGA-FE-A238 TCGA-FE-A23A TCGA-FE-A3PA 
       24.69        68.22       102.90        39.95        81.83        94.42 
TCGA-FE-A3PC TCGA-FE-A3PD TCGA-FK-A3SG TCGA-FK-A4UB TCGA-FY-A3BL TCGA-FY-A3ON 
       85.64        78.77         0.92        91.13         1.15         1.51 
TCGA-FY-A3R8 TCGA-FY-A3RA TCGA-FY-A3YR TCGA-FY-A40N TCGA-FY-A4B4 TCGA-H2-A3RI 
        4.64        18.08         6.84         0.89         1.15         2.96 
TCGA-H2-A421 TCGA-H2-A422 TCGA-IM-A3EB TCGA-IM-A3ED TCGA-IM-A3U3 TCGA-IM-A41Y 
        2.20         2.89        48.92        47.41        16.87         9.80 
TCGA-IM-A420 TCGA-J8-A3NZ TCGA-J8-A3YE TCGA-J8-A3YH TCGA-J8-A4HY TCGA-KS-A41F 
        2.96         2.24        27.81         5.72         0.20       120.99 
TCGA-KS-A41J TCGA-KS-A4I1 TCGA-KS-A4I3 TCGA-KS-A4I5 TCGA-KS-A4I7 TCGA-KS-A4I9 
       15.68         5.98        12.03         6.71        12.36        17.42 
TCGA-KS-A4ID TCGA-L6-A4EP TCGA-L6-A4EQ TCGA-L6-A4ET TCGA-MK-A4N6 TCGA-MK-A4N7 
       20.48         0.59        11.87         1.12        16.60        14.47 
TCGA-MK-A4N9 
        8.71 

$subtype3
TCGA-BJ-A0ZB TCGA-BJ-A28T TCGA-BJ-A28X TCGA-BJ-A291 TCGA-BJ-A2NA TCGA-BJ-A3PR 
        4.01         2.76        17.49        14.50         2.10         8.02 
TCGA-BJ-A3PT TCGA-BJ-A45E TCGA-BJ-A45H TCGA-BJ-A45I TCGA-BJ-A4O8 TCGA-CE-A27D 
       12.07         0.03         7.79         6.15         4.93         0.10 
TCGA-CE-A3MD TCGA-CE-A481 TCGA-CE-A485 TCGA-DE-A4M8 TCGA-DE-A4MB TCGA-DJ-A13O 
        0.20         0.10         0.10         6.08        11.57         7.07 
TCGA-DJ-A1QD TCGA-DJ-A1QE TCGA-DJ-A1QF TCGA-DJ-A1QH TCGA-DJ-A1QM TCGA-DJ-A1QQ 
       10.98        99.98        18.05         7.99         0.99         5.95 
TCGA-DJ-A2PN TCGA-DJ-A2PS TCGA-DJ-A2PT TCGA-DJ-A2PV TCGA-DJ-A2PY TCGA-DJ-A2PZ 
       10.06         1.94         9.60         7.96         8.78         8.42 
TCGA-DJ-A2Q1 TCGA-DJ-A2Q3 TCGA-DJ-A2Q6 TCGA-DJ-A2Q8 TCGA-DJ-A2Q9 TCGA-DJ-A3UM 
        9.34         9.21         8.61         7.07        10.36        17.23 
TCGA-DJ-A3UQ TCGA-DJ-A3UU TCGA-DJ-A3UW TCGA-DJ-A3UX TCGA-DJ-A3UY TCGA-DJ-A3V0 
        9.11        17.69        43.00        11.34        13.32        25.02 
TCGA-DJ-A3V4 TCGA-DJ-A3V5 TCGA-DJ-A3V8 TCGA-DJ-A3VD TCGA-DJ-A3VF TCGA-DJ-A3VJ 
       14.56         7.86         8.52        11.51         7.73        17.36 
TCGA-DJ-A4UQ TCGA-DJ-A4UT TCGA-DJ-A4UW TCGA-DJ-A4V0 TCGA-DJ-A4V4 TCGA-DO-A2HM 
       10.78        12.20         9.44         9.34         3.35         2.30 
TCGA-E3-A3E1 TCGA-E8-A242 TCGA-E8-A2EA TCGA-E8-A3X7 TCGA-E8-A413 TCGA-E8-A414 
       40.18         1.12        22.29         1.48         0.33         0.23 
TCGA-E8-A415 TCGA-E8-A416 TCGA-E8-A432 TCGA-E8-A433 TCGA-E8-A434 TCGA-E8-A436 
        0.16         0.72         0.53         0.16         0.23         1.15 
TCGA-E8-A437 TCGA-E8-A44K TCGA-E8-A44M TCGA-EL-A3CM TCGA-EL-A3CO TCGA-EL-A3CP 
        7.69         0.39         0.39        26.73        97.74       158.83 
TCGA-EL-A3CR TCGA-EL-A3CS TCGA-EL-A3CT TCGA-EL-A3CU TCGA-EL-A3CV TCGA-EL-A3CW 
        7.66        45.53        60.95       157.15        37.94        57.01 
TCGA-EL-A3CY TCGA-EL-A3D1 TCGA-EL-A3GP TCGA-EL-A3GQ TCGA-EL-A3GR TCGA-EL-A3GU 
        4.18        74.27         1.41        30.18       102.84       124.04 
TCGA-EL-A3H5 TCGA-EL-A3H7 TCGA-EL-A3MY TCGA-EL-A3MZ TCGA-EL-A3N3 TCGA-EL-A3T0 
       52.73       126.97        17.49        52.47       147.42       130.72 
TCGA-EL-A3T9 TCGA-EL-A3TA TCGA-EL-A3ZK TCGA-EL-A3ZL TCGA-EL-A3ZP TCGA-EL-A3ZS 
        5.72        66.90        31.46        50.30        52.50         7.04 
TCGA-EL-A4JW TCGA-EL-A4JZ TCGA-EL-A4K0 TCGA-EL-A4K4 TCGA-EM-A1CU TCGA-EM-A1YD 
       19.27        37.94        19.00        33.60        20.91        57.01 
TCGA-EM-A22P TCGA-EM-A2CU TCGA-EM-A2OX TCGA-EM-A2P1 TCGA-EM-A2P3 TCGA-EM-A3AR 
       11.15        13.12        19.73        17.46        14.60        16.77 
TCGA-EM-A3FQ TCGA-EM-A3O3 TCGA-EM-A4FM TCGA-EM-A4FO TCGA-ET-A25L TCGA-ET-A25M 
       16.18        14.50         4.80         8.35        14.79        12.33 
TCGA-ET-A2N0 TCGA-ET-A39J TCGA-ET-A39P TCGA-ET-A39S TCGA-ET-A3BN TCGA-ET-A3BT 
       16.08        71.01        58.72        55.10        28.24        24.72 
TCGA-ET-A3BU TCGA-ET-A3BV TCGA-ET-A3DQ TCGA-ET-A3DU TCGA-ET-A40Q TCGA-ET-A40T 
       38.30        42.21        59.87        25.32         7.17         2.10 
TCGA-ET-A4KN TCGA-FE-A22Z TCGA-FE-A237 TCGA-FE-A3PB TCGA-FK-A3SB TCGA-FK-A3SE 
        4.01        59.15        81.34        85.12         4.08        21.99 
TCGA-FK-A3SH TCGA-FY-A3I4 TCGA-FY-A3R6 TCGA-FY-A3R7 TCGA-FY-A40K TCGA-FY-A40L 
       48.10         1.12         0.76         0.03         4.14         6.54 
TCGA-FY-A40M TCGA-FY-A4B3 TCGA-GE-A2C6 TCGA-H2-A26U TCGA-IM-A3U2 TCGA-IM-A4EB 
        4.54         1.35        12.53        10.98        10.26         8.65 
TCGA-J8-A3O2 TCGA-J8-A3YD TCGA-J8-A3YF TCGA-J8-A3YG TCGA-J8-A42S TCGA-J8-A4HW 
        1.35        31.82        24.69        22.29         2.47         2.60 
TCGA-KS-A4IC TCGA-L6-A4EU 
       14.70         0.72 

subtype1 subtype2 subtype3 
    0.30     0.07     0.03 
subtype1 subtype2 subtype3 
  138.05   155.54   158.83 
subtype1 subtype2 subtype3 
  14.335   15.680   11.065 
[1] "0.3 - 138.1 (14.3)" "0.1 - 155.5 (15.7)" "0.0 - 158.8 (11.1)"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [19] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [37] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [49] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [55] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [61] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [73] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
 [79] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [85] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [97] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[103] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[115] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[121] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[133] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[139] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[145] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[151] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[175] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[187] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[193] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[199] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[205] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[211] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[217] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[223] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[229] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[235] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[241] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[247] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[253] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[259] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[265] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[271] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[277] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[283] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[289] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[295] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[301] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[307] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[313] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[319] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[325] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[331] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[337] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[343] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[349] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[355] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[361] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[367] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[373] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[379] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[385] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[391] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[397] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[403] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[409] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[415] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[421] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[427] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[433] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[439] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[445] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[451] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[457] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[463] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[469] "subtype2" "subtype2" "subtype2"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [19] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [37] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [49] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [55] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [61] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [73] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
 [79] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [85] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [97] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[103] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[115] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[121] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[133] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[139] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[145] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[151] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[175] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[187] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[193] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[199] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[205] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[211] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[217] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[223] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[229] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[235] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[241] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[247] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[253] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[259] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[265] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[271] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[277] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[283] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[289] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[295] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[301] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[307] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[313] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[319] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[325] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[331] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[337] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[343] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[349] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[355] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[361] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[367] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[373] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[379] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[385] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[391] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[397] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[403] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[409] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[415] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[421] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[427] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[433] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[439] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[445] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[451] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[457] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[463] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[469] "subtype2" "subtype2" "subtype2"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [19] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [37] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [49] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [55] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [61] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [73] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
 [79] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [85] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [97] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[103] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[115] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[121] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[133] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[139] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[145] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[151] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[175] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[187] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[193] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[199] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[205] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[211] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[217] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[223] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[229] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[235] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[241] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[247] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[253] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[259] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[265] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[271] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[277] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[283] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[289] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[295] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[301] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[307] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[313] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[319] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[325] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[331] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[337] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[343] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[349] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[355] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[361] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[367] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[373] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[379] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[385] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[391] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[397] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[403] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[409] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[415] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[421] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[427] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[433] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[439] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[445] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[451] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[457] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[463] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[469] "subtype2" "subtype2" "subtype2"
D9V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV STAGE IVA STAGE IVC
  subtype1      92       27        27        1         7         2
  subtype2      99       18        32        0        14         2
  subtype3      79        5        47        1        20         1
D9V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 44 65 45  3
  subtype2 42 63 55  5
  subtype3 52 32 57 11
D9V4, multiclass
D9V5, binary
          cls
clus        0  1
  subtype1 95 35
  subtype2 65 88
  subtype3 56 90
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   95   35
  subtype2   65   88
  subtype3   56   90
   clus
vv  subtype1 subtype2 subtype3
  0       95       65       56
  1       35       88       90
          vv
clus        M0  M1  MX
  subtype1  64   3  89
  subtype2  89   4  72
  subtype3 105   1  48
D9V6, multiclass
D9V7, binary
          cls
clus         0   1
  subtype1 111  46
  subtype2 122  43
  subtype3 117  37
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  111   46
  subtype2  122   43
  subtype3  117   37
        clus
vv       subtype1 subtype2 subtype3
  FEMALE      111      122      117
  MALE         46       43       37
          vv
clus       OTHER  SPECIFY THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL
  subtype1              2                                            73
  subtype2              3                                           139
  subtype3              4                                           121
          vv
clus       THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED)
  subtype1                                                                     82
  subtype2                                                                     10
  subtype3                                                                      7
          vv
clus       THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES)
  subtype1                                                                   0
  subtype2                                                                  13
  subtype3                                                                  22
D9V8, multiclass
D9V9, binary
          cls
clus         0   1
  subtype1   3 154
  subtype2   9 156
  subtype3   2 152
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3  154
  subtype2    9  156
  subtype3    2  152
     clus
vv    subtype1 subtype2 subtype3
  NO         3        9        2
  YES      154      156      152
D9V10, binary
          cls
clus         0   1
  subtype1 132   7
  subtype2 140   5
  subtype3 129   5
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  132    7
  subtype2  140    5
  subtype3  129    5
     clus
vv    subtype1 subtype2 subtype3
  NO       132      140      129
  YES        7        5        5
          vv
clus       MINIMAL (T3) MODERATE/ADVANCED (T4A) NONE VERY ADVANCED (T4B)
  subtype1           22                       1  129                   0
  subtype2           48                       3  108                   0
  subtype3           53                      11   85                   1
D9V11, multiclass
          vv
clus        R0  R1  R2  RX
  subtype1 123  11   0  11
  subtype2 136  13   2   6
  subtype3 111  22   1  11
D9V12, multiclass
D9V13, continuous
D9V14, binary
          cls
clus        0  1
  subtype1 74 77
  subtype2 68 94
  subtype3 72 81
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   74   77
  subtype2   68   94
  subtype3   72   81
            clus
vv           subtype1 subtype2 subtype3
  MULTIFOCAL       74       68       72
  UNIFOCAL         77       94       81
D9V15, continuous

Clustering(10) Variable = MIRSEQ_MATURE_CHIERARCHICAL
D10V1, survival
          sevent
clus2        0   1
  subtype1 177   9
  subtype2 119   3
  subtype3 162   1
subtype1 subtype2 subtype3 
     186      122      163 
subtype1 subtype2 subtype3 
       9        3        1 
$subtype1
TCGA-BJ-A0ZB TCGA-BJ-A0ZG TCGA-BJ-A28T TCGA-BJ-A28W TCGA-BJ-A28X TCGA-BJ-A291 
        4.01         7.56         2.76         1.12        17.49        14.50 
TCGA-BJ-A2NA TCGA-BJ-A3PR TCGA-BJ-A3PT TCGA-BJ-A3PU TCGA-BJ-A45E TCGA-BJ-A45H 
        2.10         8.02        12.07        10.03         0.03         7.79 
TCGA-BJ-A45I TCGA-BJ-A4O8 TCGA-CE-A27D TCGA-CE-A481 TCGA-CE-A485 TCGA-DE-A4M8 
        6.15         4.93         0.10         0.10         0.10         6.08 
TCGA-DE-A4MA TCGA-DE-A4MB TCGA-DE-A4MC TCGA-DJ-A13O TCGA-DJ-A1QD TCGA-DJ-A1QE 
       16.64        11.57        17.39         7.07        10.98        99.98 
TCGA-DJ-A1QH TCGA-DJ-A1QM TCGA-DJ-A1QO TCGA-DJ-A1QQ TCGA-DJ-A2PS TCGA-DJ-A2PT 
        7.99         0.99         1.02         5.95         1.94         9.60 
TCGA-DJ-A2PV TCGA-DJ-A2PY TCGA-DJ-A2PZ TCGA-DJ-A2Q1 TCGA-DJ-A2Q3 TCGA-DJ-A2Q6 
        7.96         8.78         8.42         9.34         9.21         8.61 
TCGA-DJ-A2Q8 TCGA-DJ-A2Q9 TCGA-DJ-A2QA TCGA-DJ-A3UM TCGA-DJ-A3UQ TCGA-DJ-A3UU 
        7.07        10.36        12.43        17.23         9.11        17.69 
TCGA-DJ-A3UW TCGA-DJ-A3UX TCGA-DJ-A3UY TCGA-DJ-A3UZ TCGA-DJ-A3V0 TCGA-DJ-A3V4 
       43.00        11.34        13.32        12.76        25.02        14.56 
TCGA-DJ-A3V5 TCGA-DJ-A3V8 TCGA-DJ-A3V9 TCGA-DJ-A3VB TCGA-DJ-A3VD TCGA-DJ-A3VF 
        7.86         8.52         7.13        11.21        11.51         7.73 
TCGA-DJ-A3VJ TCGA-DJ-A4UQ TCGA-DJ-A4UT TCGA-DJ-A4UW TCGA-DJ-A4V0 TCGA-DJ-A4V4 
       17.36        10.78        12.20         9.44         9.34         3.35 
TCGA-DO-A2HM TCGA-E3-A3E1 TCGA-E8-A242 TCGA-E8-A2EA TCGA-E8-A3X7 TCGA-E8-A413 
        2.30        40.18         1.12        22.29         1.48         0.33 
TCGA-E8-A414 TCGA-E8-A415 TCGA-E8-A416 TCGA-E8-A432 TCGA-E8-A433 TCGA-E8-A434 
        0.23         0.16         0.72         0.53         0.16         0.23 
TCGA-E8-A436 TCGA-E8-A437 TCGA-E8-A44K TCGA-E8-A44M TCGA-EL-A3CM TCGA-EL-A3CN 
        1.15         7.69         0.39         0.39        26.73       155.54 
TCGA-EL-A3CO TCGA-EL-A3CP TCGA-EL-A3CR TCGA-EL-A3CS TCGA-EL-A3CT TCGA-EL-A3CU 
       97.74       158.83         7.66        45.53        60.95       157.15 
TCGA-EL-A3CV TCGA-EL-A3CW TCGA-EL-A3CY TCGA-EL-A3D1 TCGA-EL-A3D4 TCGA-EL-A3D6 
       37.94        57.01         4.18        74.27        45.40       108.36 
TCGA-EL-A3GP TCGA-EL-A3GQ TCGA-EL-A3GR TCGA-EL-A3GU TCGA-EL-A3H5 TCGA-EL-A3H7 
        1.41        30.18       102.84       124.04        52.73       126.97 
TCGA-EL-A3MY TCGA-EL-A3MZ TCGA-EL-A3N3 TCGA-EL-A3T0 TCGA-EL-A3T1 TCGA-EL-A3T9 
       17.49        52.47       147.42       130.72       129.57         5.72 
TCGA-EL-A3TA TCGA-EL-A3ZK TCGA-EL-A3ZL TCGA-EL-A3ZP TCGA-EL-A3ZS TCGA-EL-A4JW 
       66.90        31.46        50.30        52.50         7.04        19.27 
TCGA-EL-A4JX TCGA-EL-A4JZ TCGA-EL-A4K0 TCGA-EL-A4K1 TCGA-EL-A4K4 TCGA-EL-A4KG 
       45.96        37.94        19.00        19.59        33.60        13.32 
TCGA-EM-A1CU TCGA-EM-A1YD TCGA-EM-A22I TCGA-EM-A22M TCGA-EM-A22P TCGA-EM-A2CU 
       20.91        57.01        14.70        14.50        11.15        13.12 
TCGA-EM-A2OX TCGA-EM-A2P1 TCGA-EM-A2P3 TCGA-EM-A3AR TCGA-EM-A3FM TCGA-EM-A3O3 
       19.73        17.46        14.60        16.77        21.01        14.50 
TCGA-EM-A3SU TCGA-EM-A3SZ TCGA-EM-A4FF TCGA-EM-A4FM TCGA-EM-A4FN TCGA-EM-A4FO 
       16.41        12.79        70.62         4.80         8.58         8.35 
TCGA-EM-A4FQ TCGA-ET-A25G TCGA-ET-A25L TCGA-ET-A25M TCGA-ET-A25R TCGA-ET-A2MY 
        9.80        47.47        14.79        12.33        20.42        22.09 
TCGA-ET-A2N0 TCGA-ET-A39O TCGA-ET-A39P TCGA-ET-A39S TCGA-ET-A3BN TCGA-ET-A3BT 
       16.08        61.02        58.72        55.10        28.24        24.72 
TCGA-ET-A3BV TCGA-ET-A3DO TCGA-ET-A3DQ TCGA-ET-A3DR TCGA-ET-A3DU TCGA-ET-A40Q 
       42.21        80.81        59.87        43.50        25.32         7.17 
TCGA-ET-A40T TCGA-ET-A4KN TCGA-FE-A22Z TCGA-FE-A237 TCGA-FE-A3PB TCGA-FK-A3SE 
        2.10         4.01        59.15        81.34        85.12        21.99 
TCGA-FK-A3SH TCGA-FY-A3I4 TCGA-FY-A3R6 TCGA-FY-A3R7 TCGA-FY-A3R8 TCGA-FY-A3YR 
       48.10         1.12         0.76         0.03         4.64         6.84 
TCGA-FY-A40K TCGA-FY-A40L TCGA-FY-A4B3 TCGA-GE-A2C6 TCGA-H2-A26U TCGA-H2-A421 
        4.14         6.54         1.35        12.53        10.98         2.20 
TCGA-IM-A3EB TCGA-IM-A3U2 TCGA-IM-A3U3 TCGA-IM-A41Y TCGA-IM-A420 TCGA-IM-A4EB 
       48.92        10.26        16.87         9.80         2.96         8.65 
TCGA-J8-A3NZ TCGA-J8-A3O2 TCGA-J8-A3YD TCGA-J8-A3YF TCGA-J8-A3YG TCGA-J8-A42S 
        2.24         1.35        31.82        24.69        22.29         2.47 
TCGA-J8-A4HW TCGA-KS-A4I3 TCGA-KS-A4I9 TCGA-KS-A4IC TCGA-L6-A4EU TCGA-MK-A4N6 
        2.60        12.03        17.42        14.70         0.72        16.60 

$subtype2
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0ZA TCGA-BJ-A0ZC TCGA-BJ-A0ZE 
       24.79        13.78        18.21        18.87        11.57        16.73 
TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A191 TCGA-BJ-A192 TCGA-BJ-A28V TCGA-BJ-A45C 
       23.34        20.58         4.80         8.09         5.10         5.72 
TCGA-BJ-A45D TCGA-BJ-A45F TCGA-BJ-A45G TCGA-BJ-A45K TCGA-CE-A484 TCGA-DE-A2OL 
        6.48         3.45         6.35         8.98         0.39         5.98 
TCGA-DE-A4M9 TCGA-DJ-A13M TCGA-DJ-A13R TCGA-DJ-A13S TCGA-DJ-A13W TCGA-DJ-A1QG 
        4.87         9.01         3.02         8.71        14.93         6.97 
TCGA-DJ-A1QL TCGA-DJ-A2PP TCGA-DJ-A2Q0 TCGA-DJ-A2Q2 TCGA-DJ-A2QB TCGA-DJ-A3UP 
        6.97         5.00         8.12         6.77        10.85         5.49 
TCGA-DJ-A3US TCGA-DJ-A3UT TCGA-DJ-A3VG TCGA-DJ-A3VM TCGA-DJ-A4UR TCGA-DO-A1JZ 
       20.71        15.42         8.32        15.81        10.98        54.90 
TCGA-E3-A3DZ TCGA-EL-A3CX TCGA-EL-A3CZ TCGA-EL-A3D5 TCGA-EL-A3GO TCGA-EL-A3GW 
       12.07        80.91        58.78        33.44        39.32        37.25 
TCGA-EL-A3H1 TCGA-EL-A3H2 TCGA-EL-A3T2 TCGA-EL-A3ZH TCGA-EL-A3ZR TCGA-EL-A4JV 
       49.32        33.47        32.48        78.97        48.16        45.80 
TCGA-EL-A4K2 TCGA-EL-A4K6 TCGA-EL-A4KI TCGA-EM-A1CW TCGA-EM-A1YA TCGA-EM-A1YB 
       19.53        28.73         8.68        18.05        19.79        19.46 
TCGA-EM-A1YC TCGA-EM-A1YE TCGA-EM-A22J TCGA-EM-A22K TCGA-EM-A22L TCGA-EM-A22N 
       54.21        54.08        14.47        15.72        10.45        10.65 
TCGA-EM-A22Q TCGA-EM-A2CJ TCGA-EM-A2CK TCGA-EM-A2CL TCGA-EM-A2CN TCGA-EM-A2CO 
       14.20        16.44        17.85        13.18        23.51         6.02 
TCGA-EM-A2CP TCGA-EM-A2CQ TCGA-EM-A2CR TCGA-EM-A2CT TCGA-EM-A2OV TCGA-EM-A2OW 
        2.96        12.30        13.64        10.49        22.16        13.84 
TCGA-EM-A2OY TCGA-EM-A2P2 TCGA-EM-A3AI TCGA-EM-A3AJ TCGA-EM-A3AL TCGA-EM-A3AP 
       17.59        17.29        17.46        18.94        14.14         8.35 
TCGA-EM-A3FL TCGA-EM-A3FN TCGA-EM-A3FP TCGA-EM-A3FR TCGA-EM-A3O6 TCGA-EM-A3O8 
       16.77        12.07        17.39        15.02        11.15        12.53 
TCGA-EM-A3O9 TCGA-EM-A3OA TCGA-EM-A3OB TCGA-EM-A3ST TCGA-EM-A3SY TCGA-EM-A4FH 
        9.24        13.91         7.82        11.51        13.51        16.90 
TCGA-EM-A4FK TCGA-EM-A4FR TCGA-EM-A4FU TCGA-EM-A4G1 TCGA-ET-A25I TCGA-ET-A25P 
        8.98         5.03        37.87         0.95        48.20        18.35 
TCGA-ET-A2N3 TCGA-ET-A2N5 TCGA-ET-A39I TCGA-ET-A39N TCGA-ET-A3BW TCGA-ET-A3DS 
       19.76        58.22        13.74        98.56         2.37         0.30 
TCGA-ET-A3DV TCGA-ET-A40P TCGA-ET-A4KQ TCGA-FE-A239 TCGA-FK-A3SD TCGA-FY-A2QD 
      132.36         3.22         1.94        33.63         0.89         1.25 
TCGA-FY-A3I5 TCGA-FY-A3NM TCGA-FY-A3NP TCGA-FY-A3R9 TCGA-FY-A3W9 TCGA-FY-A3WA 
        1.64         0.99        16.14        16.57         0.76         0.95 
TCGA-FY-A40M TCGA-H2-A2K9 TCGA-H2-A3RH TCGA-IM-A41Z TCGA-J8-A3O0 TCGA-KS-A41I 
        4.54        11.31        12.46         9.63        43.17        15.95 
TCGA-KS-A41L TCGA-KS-A4ID 
       86.70        20.48 

$subtype3
TCGA-BJ-A0Z3 TCGA-BJ-A0Z5 TCGA-BJ-A0Z9 TCGA-BJ-A0ZH TCGA-BJ-A0ZJ TCGA-BJ-A28R 
       16.34        14.73         8.25        15.12        17.69         4.87 
TCGA-BJ-A28Z TCGA-BJ-A290 TCGA-BJ-A45J TCGA-BJ-A4O9 TCGA-CE-A13K TCGA-CE-A3MD 
        1.22        20.58         5.06         5.95         0.53         0.20 
TCGA-CE-A3ME TCGA-CE-A482 TCGA-CE-A483 TCGA-DE-A0XZ TCGA-DE-A0Y2 TCGA-DE-A0Y3 
        0.23         0.07         0.10        20.22        15.42        36.46 
TCGA-DE-A3KN TCGA-DE-A4MD TCGA-DJ-A13P TCGA-DJ-A13T TCGA-DJ-A13U TCGA-DJ-A13X 
       15.85        12.00       138.05        24.92        12.92         7.99 
TCGA-DJ-A1QF TCGA-DJ-A1QI TCGA-DJ-A1QN TCGA-DJ-A2PN TCGA-DJ-A2PO TCGA-DJ-A2PQ 
       18.05        15.02         8.98        10.06         7.96        20.48 
TCGA-DJ-A2PR TCGA-DJ-A2PU TCGA-DJ-A2PW TCGA-DJ-A2PX TCGA-DJ-A2Q4 TCGA-DJ-A2Q5 
       10.45        10.26         7.69         5.03         9.44         9.90 
TCGA-DJ-A2Q7 TCGA-DJ-A2QC TCGA-DJ-A3UK TCGA-DJ-A3UN TCGA-DJ-A3UO TCGA-DJ-A3UR 
        9.57         9.99         8.25        12.49        15.78        23.70 
TCGA-DJ-A3V2 TCGA-DJ-A3V3 TCGA-DJ-A3V7 TCGA-DJ-A3VA TCGA-DJ-A3VE TCGA-DJ-A3VL 
        7.40        17.75         9.83        11.93         4.41        17.19 
TCGA-DJ-A4UL TCGA-DJ-A4V2 TCGA-DJ-A4V5 TCGA-DO-A1K0 TCGA-E3-A3DY TCGA-E3-A3E0 
       11.93         3.09        16.14        21.53        31.07        66.35 
TCGA-E3-A3E2 TCGA-E3-A3E3 TCGA-E3-A3E5 TCGA-E8-A417 TCGA-E8-A418 TCGA-E8-A438 
       63.16        30.28        14.04         0.26         1.48         6.90 
TCGA-EL-A3CL TCGA-EL-A3GS TCGA-EL-A3GV TCGA-EL-A3GX TCGA-EL-A3GY TCGA-EL-A3H4 
       31.63        65.39        50.37       147.75       101.13        38.66 
TCGA-EL-A3H8 TCGA-EL-A3MW TCGA-EL-A3N2 TCGA-EL-A3T3 TCGA-EL-A3T6 TCGA-EL-A3T7 
      131.15       108.66        12.16       116.91        98.20        41.29 
TCGA-EL-A3T8 TCGA-EL-A3TB TCGA-EL-A3ZG TCGA-EL-A3ZQ TCGA-EL-A3ZT TCGA-EL-A4K7 
       95.38        82.82        77.33        45.53        44.61        41.13 
TCGA-EL-A4K9 TCGA-EL-A4KD TCGA-EL-A4KH TCGA-EM-A1CS TCGA-EM-A1CT TCGA-EM-A1CV 
       37.78        29.95        11.87        26.86        18.18        12.36 
TCGA-EM-A22O TCGA-EM-A2CS TCGA-EM-A2OZ TCGA-EM-A2P0 TCGA-EM-A3AK TCGA-EM-A3AN 
       11.74        15.16        12.07        17.59        15.68        19.63 
TCGA-EM-A3AO TCGA-EM-A3AQ TCGA-EM-A3FJ TCGA-EM-A3FK TCGA-EM-A3FO TCGA-EM-A3FQ 
       13.38        16.44        27.95        23.77        17.49        16.18 
TCGA-EM-A3O7 TCGA-EM-A3SX TCGA-EM-A4FV TCGA-ET-A25J TCGA-ET-A25K TCGA-ET-A25N 
        7.33        15.62        12.72        29.69        32.35        14.79 
TCGA-ET-A25O TCGA-ET-A2MX TCGA-ET-A2MZ TCGA-ET-A2N1 TCGA-ET-A2N4 TCGA-ET-A39J 
       27.09        54.02        12.26        29.19         2.66        71.01 
TCGA-ET-A39K TCGA-ET-A39L TCGA-ET-A39M TCGA-ET-A39R TCGA-ET-A39T TCGA-ET-A3BO 
       72.49        65.33        84.89        57.11        59.15         5.82 
TCGA-ET-A3BP TCGA-ET-A3BQ TCGA-ET-A3BS TCGA-ET-A3BU TCGA-ET-A3BX TCGA-ET-A3DP 
        4.18         2.43         5.52        38.30         4.50        56.88 
TCGA-ET-A3DT TCGA-ET-A3DW TCGA-ET-A40R TCGA-ET-A40S TCGA-FE-A230 TCGA-FE-A231 
       17.98        24.69         4.80         5.00        59.70        31.59 
TCGA-FE-A232 TCGA-FE-A233 TCGA-FE-A234 TCGA-FE-A235 TCGA-FE-A236 TCGA-FE-A238 
       44.25        24.69        68.22       102.90        66.77        39.95 
TCGA-FE-A23A TCGA-FE-A3PA TCGA-FE-A3PC TCGA-FE-A3PD TCGA-FK-A3S3 TCGA-FK-A3SB 
       81.83        94.42        85.64        78.77        46.06         4.08 
TCGA-FK-A3SG TCGA-FK-A4UB TCGA-FY-A3BL TCGA-FY-A3ON TCGA-FY-A3RA TCGA-FY-A40N 
        0.92        91.13         1.15         1.51        18.08         0.89 
TCGA-FY-A4B4 TCGA-H2-A3RI TCGA-H2-A422 TCGA-IM-A3ED TCGA-J8-A3O1 TCGA-J8-A3YE 
        1.15         2.96         2.89        47.41        27.19        27.81 
TCGA-J8-A3YH TCGA-J8-A4HY TCGA-KS-A41F TCGA-KS-A41J TCGA-KS-A4I1 TCGA-KS-A4I5 
        5.72         0.20       120.99        15.68         5.98         6.71 
TCGA-KS-A4I7 TCGA-KS-A4IB TCGA-L6-A4EP TCGA-L6-A4EQ TCGA-L6-A4ET TCGA-MK-A4N7 
       12.36        64.54         0.59        11.87         1.12        14.47 
TCGA-MK-A4N9 
        8.71 

subtype1 subtype2 subtype3 
    0.03     0.30     0.07 
subtype1 subtype2 subtype3 
  158.83   132.36   147.75 
subtype1 subtype2 subtype3 
  12.265   13.810   15.850 
[1] "0.0 - 158.8 (12.3)" "0.3 - 132.4 (13.8)" "0.1 - 147.8 (15.8)"
  [1] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [19] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [31] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [37] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [49] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [55] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [61] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [67] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [73] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [79] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [85] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [97] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[103] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[109] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[115] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[127] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[133] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[139] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[145] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[151] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[157] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[163] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[169] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[175] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[187] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[193] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[199] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[205] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[211] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[217] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[223] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[229] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[235] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[241] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[247] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[253] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[259] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[265] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[271] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[277] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[283] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[289] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[295] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[301] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[307] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[313] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[319] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[325] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[331] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[337] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[343] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[349] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[355] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[361] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[367] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[373] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[379] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[385] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[391] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[397] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[403] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[409] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[415] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[421] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[427] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[433] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[439] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[445] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[451] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[457] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[463] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[469] "subtype1" "subtype3" "subtype3"
  [1] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [19] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [31] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [37] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [49] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [55] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [61] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [67] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [73] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [79] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [85] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [97] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[103] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[109] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[115] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[127] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[133] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[139] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[145] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[151] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[157] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[163] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[169] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[175] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[187] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[193] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[199] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[205] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[211] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[217] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[223] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[229] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[235] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[241] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[247] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[253] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[259] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[265] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[271] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[277] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[283] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[289] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[295] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[301] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[307] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[313] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[319] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[325] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[331] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[337] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[343] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[349] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[355] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[361] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[367] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[373] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[379] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[385] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[391] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[397] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[403] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[409] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[415] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[421] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[427] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[433] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[439] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[445] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[451] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[457] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[463] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[469] "subtype1" "subtype3" "subtype3"
  [1] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [19] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [31] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [37] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [49] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [55] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [61] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [67] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [73] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [79] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [85] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [97] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[103] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[109] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[115] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[127] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[133] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[139] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[145] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[151] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[157] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[163] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[169] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[175] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[187] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[193] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[199] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[205] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[211] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[217] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[223] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[229] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[235] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[241] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[247] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[253] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[259] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[265] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[271] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[277] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[283] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[289] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[295] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[301] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[307] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[313] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[319] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[325] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[331] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[337] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[343] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[349] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[355] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[361] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[367] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[373] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[379] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[385] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[391] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[397] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[403] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[409] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[415] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[421] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[427] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[433] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[439] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[445] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[451] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[457] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[463] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[469] "subtype1" "subtype3" "subtype3"
D10V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV STAGE IVA STAGE IVC
  subtype1      96        5        61        1        24         1
  subtype2      71       27        19        1         2         2
  subtype3     103       18        26        0        15         2
D10V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 59 40 77 11
  subtype2 40 53 29  1
  subtype3 39 67 51  7
D10V4, multiclass
D10V5, binary
          cls
clus         0   1
  subtype1  69 109
  subtype2  81  16
  subtype3  66  88
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   69  109
  subtype2   81   16
  subtype3   66   88
   clus
vv  subtype1 subtype2 subtype3
  0       69       81       66
  1      109       16       88
          vv
clus        M0  M1  MX
  subtype1 124   1  64
  subtype2  47   3  72
  subtype3  87   4  73
D10V6, multiclass
D10V7, binary
          cls
clus         0   1
  subtype1 144  45
  subtype2  89  34
  subtype3 117  47
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  144   45
  subtype2   89   34
  subtype3  117   47
        clus
vv       subtype1 subtype2 subtype3
  FEMALE      144       89      117
  MALE         45       34       47
          vv
clus       OTHER  SPECIFY THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL
  subtype1              4                                           147
  subtype2              2                                            45
  subtype3              3                                           141
          vv
clus       THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED)
  subtype1                                                                     10
  subtype2                                                                     76
  subtype3                                                                     13
          vv
clus       THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES)
  subtype1                                                                  28
  subtype2                                                                   0
  subtype3                                                                   7
D10V8, multiclass
D10V9, binary
          cls
clus         0   1
  subtype1   2 187
  subtype2   2 121
  subtype3  10 154
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2  187
  subtype2    2  121
  subtype3   10  154
     clus
vv    subtype1 subtype2 subtype3
  NO         2        2       10
  YES      187      121      154
D10V10, binary
          cls
clus         0   1
  subtype1 160   6
  subtype2 104   5
  subtype3 137   6
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  160    6
  subtype2  104    5
  subtype3  137    6
     clus
vv    subtype1 subtype2 subtype3
  NO       160      104      137
  YES        6        5        6
          vv
clus       MINIMAL (T3) MODERATE/ADVANCED (T4A) NONE VERY ADVANCED (T4B)
  subtype1           71                      11   99                   1
  subtype2           12                       0  108                   0
  subtype3           40                       4  115                   0
D10V11, multiclass
          vv
clus        R0  R1  R2  RX
  subtype1 137  26   2  13
  subtype2  99   9   0   6
  subtype3 134  11   1   9
D10V12, multiclass
D10V13, continuous
D10V14, binary
          cls
clus         0   1
  subtype1  87 100
  subtype2  57  64
  subtype3  70  88
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   87  100
  subtype2   57   64
  subtype3   70   88
            clus
vv           subtype1 subtype2 subtype3
  MULTIFOCAL       87       57       70
  UNIFOCAL        100       64       88
D10V15, continuous
> q(save="no")
