
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.4.4139/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.4.4139/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/480578/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering_new/THCA-TP/4474541/THCA-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=THCA-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=THCA-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=496, in cluster file=494, common to both=494
[1] "Reduce the number of clustering variables from 35 to 29."
[1]  29 494
[1] "Amp Peak 1(Xq22.3)"
[1] 3
      AMP PEAK 1(XQ22.3) CNV AMP PEAK 1(XQ22.3) WILD-TYPE 
                          16                          478 
      AMP PEAK 1(XQ22.3) CNV AMP PEAK 1(XQ22.3) WILD-TYPE 
                          16                          478 
[1] "Del Peak  2(2p23.1)"
[1] 3
      DEL PEAK  2(2P23.1) CNV DEL PEAK  2(2P23.1) WILD-TYPE 
                           12                           482 
      DEL PEAK  2(2P23.1) CNV DEL PEAK  2(2P23.1) WILD-TYPE 
                           12                           482 
[1] "Del Peak  3(2q35)"
[1] 3
      DEL PEAK  3(2Q35) CNV DEL PEAK  3(2Q35) WILD-TYPE 
                         11                         483 
      DEL PEAK  3(2Q35) CNV DEL PEAK  3(2Q35) WILD-TYPE 
                         11                         483 
[1] "Del Peak  4(5p15.2)"
[1] 3
      DEL PEAK  4(5P15.2) CNV DEL PEAK  4(5P15.2) WILD-TYPE 
                            4                           490 
      DEL PEAK  4(5P15.2) CNV DEL PEAK  4(5P15.2) WILD-TYPE 
                            4                           490 
[1] "Del Peak  6(6q22.31)"
[1] 3
      DEL PEAK  6(6Q22.31) CNV DEL PEAK  6(6Q22.31) WILD-TYPE 
                             6                            488 
      DEL PEAK  6(6Q22.31) CNV DEL PEAK  6(6Q22.31) WILD-TYPE 
                             6                            488 
[1] "Del Peak  8(7q34)"
[1] 3
      DEL PEAK  8(7Q34) CNV DEL PEAK  8(7Q34) WILD-TYPE 
                          4                         490 
      DEL PEAK  8(7Q34) CNV DEL PEAK  8(7Q34) WILD-TYPE 
                          4                         490 
[1] "Del Peak  9(8p23.2)"
[1] 3
      DEL PEAK  9(8P23.2) CNV DEL PEAK  9(8P23.2) WILD-TYPE 
                            4                           490 
      DEL PEAK  9(8P23.2) CNV DEL PEAK  9(8P23.2) WILD-TYPE 
                            4                           490 
[1] "Del Peak 10(8p22)"
[1] 3
      DEL PEAK 10(8P22) CNV DEL PEAK 10(8P22) WILD-TYPE 
                          4                         490 
      DEL PEAK 10(8P22) CNV DEL PEAK 10(8P22) WILD-TYPE 
                          4                         490 
[1] "Del Peak 11(8p12)"
[1] 3
      DEL PEAK 11(8P12) CNV DEL PEAK 11(8P12) WILD-TYPE 
                          4                         490 
      DEL PEAK 11(8P12) CNV DEL PEAK 11(8P12) WILD-TYPE 
                          4                         490 
[1] "Del Peak 12(8q24.22)"
[1] 3
      DEL PEAK 12(8Q24.22) CNV DEL PEAK 12(8Q24.22) WILD-TYPE 
                             7                            487 
      DEL PEAK 12(8Q24.22) CNV DEL PEAK 12(8Q24.22) WILD-TYPE 
                             7                            487 
[1] "Del Peak 13(9q21.13)"
[1] 3
      DEL PEAK 13(9Q21.13) CNV DEL PEAK 13(9Q21.13) WILD-TYPE 
                            23                            471 
      DEL PEAK 13(9Q21.13) CNV DEL PEAK 13(9Q21.13) WILD-TYPE 
                            23                            471 
[1] "Del Peak 14(10q21.2)"
[1] 3
      DEL PEAK 14(10Q21.2) CNV DEL PEAK 14(10Q21.2) WILD-TYPE 
                            11                            483 
      DEL PEAK 14(10Q21.2) CNV DEL PEAK 14(10Q21.2) WILD-TYPE 
                            11                            483 
[1] "Del Peak 15(10q23.31)"
[1] 3
      DEL PEAK 15(10Q23.31) CNV DEL PEAK 15(10Q23.31) WILD-TYPE 
                             11                             483 
      DEL PEAK 15(10Q23.31) CNV DEL PEAK 15(10Q23.31) WILD-TYPE 
                             11                             483 
[1] "Del Peak 16(11p15.1)"
[1] 3
      DEL PEAK 16(11P15.1) CNV DEL PEAK 16(11P15.1) WILD-TYPE 
                             7                            487 
      DEL PEAK 16(11P15.1) CNV DEL PEAK 16(11P15.1) WILD-TYPE 
                             7                            487 
[1] "Del Peak 17(13q12.3)"
[1] 3
      DEL PEAK 17(13Q12.3) CNV DEL PEAK 17(13Q12.3) WILD-TYPE 
                            15                            479 
      DEL PEAK 17(13Q12.3) CNV DEL PEAK 17(13Q12.3) WILD-TYPE 
                            15                            479 
[1] "Del Peak 18(13q21.31)"
[1] 3
      DEL PEAK 18(13Q21.31) CNV DEL PEAK 18(13Q21.31) WILD-TYPE 
                             17                             477 
      DEL PEAK 18(13Q21.31) CNV DEL PEAK 18(13Q21.31) WILD-TYPE 
                             17                             477 
[1] "Del Peak 19(15q25.3)"
[1] 3
      DEL PEAK 19(15Q25.3) CNV DEL PEAK 19(15Q25.3) WILD-TYPE 
                             8                            486 
      DEL PEAK 19(15Q25.3) CNV DEL PEAK 19(15Q25.3) WILD-TYPE 
                             8                            486 
[1] "Del Peak 21(16q23.3)"
[1] 3
      DEL PEAK 21(16Q23.3) CNV DEL PEAK 21(16Q23.3) WILD-TYPE 
                             6                            488 
      DEL PEAK 21(16Q23.3) CNV DEL PEAK 21(16Q23.3) WILD-TYPE 
                             6                            488 
[1] "Del Peak 22(17p13.1)"
[1] 3
      DEL PEAK 22(17P13.1) CNV DEL PEAK 22(17P13.1) WILD-TYPE 
                             8                            486 
      DEL PEAK 22(17P13.1) CNV DEL PEAK 22(17P13.1) WILD-TYPE 
                             8                            486 
[1] "Del Peak 23(18p11.21)"
[1] 3
      DEL PEAK 23(18P11.21) CNV DEL PEAK 23(18P11.21) WILD-TYPE 
                              4                             490 
      DEL PEAK 23(18P11.21) CNV DEL PEAK 23(18P11.21) WILD-TYPE 
                              4                             490 
[1] "Del Peak 24(18q22.2)"
[1] 3
      DEL PEAK 24(18Q22.2) CNV DEL PEAK 24(18Q22.2) WILD-TYPE 
                             5                            489 
      DEL PEAK 24(18Q22.2) CNV DEL PEAK 24(18Q22.2) WILD-TYPE 
                             5                            489 
[1] "Del Peak 25(19p13.2)"
[1] 3
      DEL PEAK 25(19P13.2) CNV DEL PEAK 25(19P13.2) WILD-TYPE 
                             6                            488 
      DEL PEAK 25(19P13.2) CNV DEL PEAK 25(19P13.2) WILD-TYPE 
                             6                            488 
[1] "Del Peak 28(21q21.1)"
[1] 3
      DEL PEAK 28(21Q21.1) CNV DEL PEAK 28(21Q21.1) WILD-TYPE 
                             9                            485 
      DEL PEAK 28(21Q21.1) CNV DEL PEAK 28(21Q21.1) WILD-TYPE 
                             9                            485 
[1] "Del Peak 29(22q13.1)"
[1] 3
      DEL PEAK 29(22Q13.1) CNV DEL PEAK 29(22Q13.1) WILD-TYPE 
                            85                            409 
      DEL PEAK 29(22Q13.1) CNV DEL PEAK 29(22Q13.1) WILD-TYPE 
                            85                            409 
[1] "Del Peak 30(22q13.2)"
[1] 3
      DEL PEAK 30(22Q13.2) CNV DEL PEAK 30(22Q13.2) WILD-TYPE 
                            85                            409 
      DEL PEAK 30(22Q13.2) CNV DEL PEAK 30(22Q13.2) WILD-TYPE 
                            85                            409 
[1] "Del Peak 31(22q13.31)"
[1] 3
      DEL PEAK 31(22Q13.31) CNV DEL PEAK 31(22Q13.31) WILD-TYPE 
                             85                             409 
      DEL PEAK 31(22Q13.31) CNV DEL PEAK 31(22Q13.31) WILD-TYPE 
                             85                             409 
[1] "Del Peak 32(22q13.32)"
[1] 3
      DEL PEAK 32(22Q13.32) CNV DEL PEAK 32(22Q13.32) WILD-TYPE 
                             86                             408 
      DEL PEAK 32(22Q13.32) CNV DEL PEAK 32(22Q13.32) WILD-TYPE 
                             86                             408 
[1] "Del Peak 33(Xq22.1)"
[1] 3
      DEL PEAK 33(XQ22.1) CNV DEL PEAK 33(XQ22.1) WILD-TYPE 
                            6                           488 
      DEL PEAK 33(XQ22.1) CNV DEL PEAK 33(XQ22.1) WILD-TYPE 
                            6                           488 
[1] "Del Peak 34(Xq22.3)"
[1] 3
      DEL PEAK 34(XQ22.3) CNV DEL PEAK 34(XQ22.3) WILD-TYPE 
                            4                           490 
      DEL PEAK 34(XQ22.3) CNV DEL PEAK 34(XQ22.3) WILD-TYPE 
                            4                           490 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 494 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 494 columns, 0 survival variables, and 10 non-survival variables.
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak 1(Xq22.3)
D1V1, multiclass
        clus
vv       AMP PEAK 1(XQ22.3) CNV AMP PEAK 1(XQ22.3) WILD-TYPE
  CLUS_1                      8                           26
  CLUS_2                      8                          375
  CLUS_3                      0                           77
D1V2, multiclass
        clus
vv       AMP PEAK 1(XQ22.3) CNV AMP PEAK 1(XQ22.3) WILD-TYPE
  CLUS_1                      7                          144
  CLUS_2                      2                           81
  CLUS_3                      7                          253
D1V3, multiclass
        clus
vv       AMP PEAK 1(XQ22.3) CNV AMP PEAK 1(XQ22.3) WILD-TYPE
  CLUS_1                      1                           60
  CLUS_2                      2                           77
  CLUS_3                      2                           79
D1V4, multiclass
        clus
vv       AMP PEAK 1(XQ22.3) CNV AMP PEAK 1(XQ22.3) WILD-TYPE
  CLUS_1                      1                           30
  CLUS_2                      0                           94
  CLUS_3                      4                           92
D1V5, multiclass
        clus
vv       AMP PEAK 1(XQ22.3) CNV AMP PEAK 1(XQ22.3) WILD-TYPE
  CLUS_1                      7                          143
  CLUS_2                      1                           54
  CLUS_3                      2                          112
  CLUS_4                      6                          155
D1V6, multiclass
        clus
vv       AMP PEAK 1(XQ22.3) CNV AMP PEAK 1(XQ22.3) WILD-TYPE
  CLUS_1                      7                          125
  CLUS_2                      6                          206
  CLUS_3                      2                           92
  CLUS_4                      1                           41
D1V7, multiclass
        clus
vv       AMP PEAK 1(XQ22.3) CNV AMP PEAK 1(XQ22.3) WILD-TYPE
  CLUS_1                      6                          144
  CLUS_2                      5                          168
  CLUS_3                      5                          165
D1V8, multiclass
        clus
vv       AMP PEAK 1(XQ22.3) CNV AMP PEAK 1(XQ22.3) WILD-TYPE
  CLUS_1                      4                          151
  CLUS_2                      6                          124
  CLUS_3                      6                          202
D1V9, multiclass
        clus
vv       AMP PEAK 1(XQ22.3) CNV AMP PEAK 1(XQ22.3) WILD-TYPE
  CLUS_1                      6                          157
  CLUS_2                      6                          163
  CLUS_3                      4                          157
D1V10, multiclass
        clus
vv       AMP PEAK 1(XQ22.3) CNV AMP PEAK 1(XQ22.3) WILD-TYPE
  CLUS_1                      6                          193
  CLUS_2                      6                          122
  CLUS_3                      4                          162

Clustering(2) Variable = Del Peak  2(2p23.1)
D2V1, multiclass
        clus
vv       DEL PEAK  2(2P23.1) CNV DEL PEAK  2(2P23.1) WILD-TYPE
  CLUS_1                       9                            25
  CLUS_2                       1                           382
  CLUS_3                       2                            75
D2V2, multiclass
        clus
vv       DEL PEAK  2(2P23.1) CNV DEL PEAK  2(2P23.1) WILD-TYPE
  CLUS_1                      11                           140
  CLUS_2                       1                            82
  CLUS_3                       0                           260
D2V3, multiclass
        clus
vv       DEL PEAK  2(2P23.1) CNV DEL PEAK  2(2P23.1) WILD-TYPE
  CLUS_1                       1                            60
  CLUS_2                       3                            76
  CLUS_3                       2                            79
D2V4, multiclass
        clus
vv       DEL PEAK  2(2P23.1) CNV DEL PEAK  2(2P23.1) WILD-TYPE
  CLUS_1                       3                            28
  CLUS_2                       0                            94
  CLUS_3                       3                            93
D2V5, multiclass
        clus
vv       DEL PEAK  2(2P23.1) CNV DEL PEAK  2(2P23.1) WILD-TYPE
  CLUS_1                      12                           138
  CLUS_2                       0                            55
  CLUS_3                       0                           114
  CLUS_4                       0                           161
D2V6, multiclass
        clus
vv       DEL PEAK  2(2P23.1) CNV DEL PEAK  2(2P23.1) WILD-TYPE
  CLUS_1                      11                           121
  CLUS_2                       0                           212
  CLUS_3                       0                            94
  CLUS_4                       1                            41
D2V7, multiclass
        clus
vv       DEL PEAK  2(2P23.1) CNV DEL PEAK  2(2P23.1) WILD-TYPE
  CLUS_1                      12                           138
  CLUS_2                       0                           173
  CLUS_3                       0                           170
D2V8, multiclass
        clus
vv       DEL PEAK  2(2P23.1) CNV DEL PEAK  2(2P23.1) WILD-TYPE
  CLUS_1                       0                           155
  CLUS_2                      12                           118
  CLUS_3                       0                           208
D2V9, multiclass
        clus
vv       DEL PEAK  2(2P23.1) CNV DEL PEAK  2(2P23.1) WILD-TYPE
  CLUS_1                      12                           151
  CLUS_2                       0                           169
  CLUS_3                       0                           161
D2V10, multiclass
        clus
vv       DEL PEAK  2(2P23.1) CNV DEL PEAK  2(2P23.1) WILD-TYPE
  CLUS_1                       0                           199
  CLUS_2                      12                           116
  CLUS_3                       0                           166

Clustering(3) Variable = Del Peak  3(2q35)
D3V1, multiclass
        clus
vv       DEL PEAK  3(2Q35) CNV DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                    10                          24
  CLUS_2                     1                         382
  CLUS_3                     0                          77
D3V2, multiclass
        clus
vv       DEL PEAK  3(2Q35) CNV DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                    11                         140
  CLUS_2                     0                          83
  CLUS_3                     0                         260
D3V3, multiclass
        clus
vv       DEL PEAK  3(2Q35) CNV DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                     1                          60
  CLUS_2                     4                          75
  CLUS_3                     2                          79
D3V4, multiclass
        clus
vv       DEL PEAK  3(2Q35) CNV DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                     4                          27
  CLUS_2                     0                          94
  CLUS_3                     3                          93
D3V5, multiclass
        clus
vv       DEL PEAK  3(2Q35) CNV DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                    11                         139
  CLUS_2                     0                          55
  CLUS_3                     0                         114
  CLUS_4                     0                         161
D3V6, multiclass
        clus
vv       DEL PEAK  3(2Q35) CNV DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                    11                         121
  CLUS_2                     0                         212
  CLUS_3                     0                          94
  CLUS_4                     0                          42
D3V7, multiclass
        clus
vv       DEL PEAK  3(2Q35) CNV DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                    11                         139
  CLUS_2                     0                         173
  CLUS_3                     0                         170
D3V8, multiclass
        clus
vv       DEL PEAK  3(2Q35) CNV DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                     0                         155
  CLUS_2                    11                         119
  CLUS_3                     0                         208
D3V9, multiclass
        clus
vv       DEL PEAK  3(2Q35) CNV DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                    11                         152
  CLUS_2                     0                         169
  CLUS_3                     0                         161
D3V10, multiclass
        clus
vv       DEL PEAK  3(2Q35) CNV DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                     0                         199
  CLUS_2                    11                         117
  CLUS_3                     0                         166

Clustering(4) Variable = Del Peak  4(5p15.2)
D4V1, multiclass
        clus
vv       DEL PEAK  4(5P15.2) CNV DEL PEAK  4(5P15.2) WILD-TYPE
  CLUS_1                       1                            33
  CLUS_2                       3                           380
  CLUS_3                       0                            77
D4V2, multiclass
        clus
vv       DEL PEAK  4(5P15.2) CNV DEL PEAK  4(5P15.2) WILD-TYPE
  CLUS_1                       0                           151
  CLUS_2                       1                            82
  CLUS_3                       3                           257
D4V3, multiclass
D4V4, multiclass
D4V5, multiclass
        clus
vv       DEL PEAK  4(5P15.2) CNV DEL PEAK  4(5P15.2) WILD-TYPE
  CLUS_1                       0                           150
  CLUS_2                       0                            55
  CLUS_3                       2                           112
  CLUS_4                       1                           160
D4V6, multiclass
        clus
vv       DEL PEAK  4(5P15.2) CNV DEL PEAK  4(5P15.2) WILD-TYPE
  CLUS_1                       0                           132
  CLUS_2                       3                           209
  CLUS_3                       0                            94
  CLUS_4                       0                            42
D4V7, multiclass
        clus
vv       DEL PEAK  4(5P15.2) CNV DEL PEAK  4(5P15.2) WILD-TYPE
  CLUS_1                       0                           150
  CLUS_2                       2                           171
  CLUS_3                       2                           168
D4V8, multiclass
        clus
vv       DEL PEAK  4(5P15.2) CNV DEL PEAK  4(5P15.2) WILD-TYPE
  CLUS_1                       2                           153
  CLUS_2                       0                           130
  CLUS_3                       2                           206
D4V9, multiclass
        clus
vv       DEL PEAK  4(5P15.2) CNV DEL PEAK  4(5P15.2) WILD-TYPE
  CLUS_1                       0                           163
  CLUS_2                       2                           167
  CLUS_3                       2                           159
D4V10, multiclass
        clus
vv       DEL PEAK  4(5P15.2) CNV DEL PEAK  4(5P15.2) WILD-TYPE
  CLUS_1                       2                           197
  CLUS_2                       0                           128
  CLUS_3                       2                           164

Clustering(5) Variable = Del Peak  6(6q22.31)
D5V1, multiclass
        clus
vv       DEL PEAK  6(6Q22.31) CNV DEL PEAK  6(6Q22.31) WILD-TYPE
  CLUS_1                        4                             30
  CLUS_2                        2                            381
  CLUS_3                        0                             77
D5V2, multiclass
        clus
vv       DEL PEAK  6(6Q22.31) CNV DEL PEAK  6(6Q22.31) WILD-TYPE
  CLUS_1                        5                            146
  CLUS_2                        1                             82
  CLUS_3                        0                            260
D5V3, multiclass
        clus
vv       DEL PEAK  6(6Q22.31) CNV DEL PEAK  6(6Q22.31) WILD-TYPE
  CLUS_1                        0                             61
  CLUS_2                        0                             79
  CLUS_3                        4                             77
D5V4, multiclass
        clus
vv       DEL PEAK  6(6Q22.31) CNV DEL PEAK  6(6Q22.31) WILD-TYPE
  CLUS_1                        0                             31
  CLUS_2                        1                             93
  CLUS_3                        3                             93
D5V5, multiclass
        clus
vv       DEL PEAK  6(6Q22.31) CNV DEL PEAK  6(6Q22.31) WILD-TYPE
  CLUS_1                        5                            145
  CLUS_2                        0                             55
  CLUS_3                        0                            114
  CLUS_4                        0                            161
D5V6, multiclass
        clus
vv       DEL PEAK  6(6Q22.31) CNV DEL PEAK  6(6Q22.31) WILD-TYPE
  CLUS_1                        5                            127
  CLUS_2                        0                            212
  CLUS_3                        0                             94
  CLUS_4                        0                             42
D5V7, multiclass
        clus
vv       DEL PEAK  6(6Q22.31) CNV DEL PEAK  6(6Q22.31) WILD-TYPE
  CLUS_1                        5                            145
  CLUS_2                        0                            173
  CLUS_3                        1                            169
D5V8, multiclass
        clus
vv       DEL PEAK  6(6Q22.31) CNV DEL PEAK  6(6Q22.31) WILD-TYPE
  CLUS_1                        0                            155
  CLUS_2                        5                            125
  CLUS_3                        1                            207
D5V9, multiclass
        clus
vv       DEL PEAK  6(6Q22.31) CNV DEL PEAK  6(6Q22.31) WILD-TYPE
  CLUS_1                        5                            158
  CLUS_2                        0                            169
  CLUS_3                        1                            160
D5V10, multiclass
        clus
vv       DEL PEAK  6(6Q22.31) CNV DEL PEAK  6(6Q22.31) WILD-TYPE
  CLUS_1                        1                            198
  CLUS_2                        5                            123
  CLUS_3                        0                            166

Clustering(6) Variable = Del Peak  8(7q34)
D6V1, multiclass
        clus
vv       DEL PEAK  8(7Q34) CNV DEL PEAK  8(7Q34) WILD-TYPE
  CLUS_1                     0                          34
  CLUS_2                     3                         380
  CLUS_3                     1                          76
D6V2, multiclass
        clus
vv       DEL PEAK  8(7Q34) CNV DEL PEAK  8(7Q34) WILD-TYPE
  CLUS_1                     2                         149
  CLUS_2                     0                          83
  CLUS_3                     2                         258
D6V3, multiclass
[1] "Remove cluster labels:" "DEL PEAK  8(7Q34) CNV" 
clus
      DEL PEAK  8(7Q34) CNV DEL PEAK  8(7Q34) WILD-TYPE 
                          1                         220 
                 TCGA-BJ-A0YZ                  TCGA-BJ-A0Z0 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0Z2                  TCGA-BJ-A0Z3 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0Z5                  TCGA-BJ-A0Z9 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0ZA                  TCGA-BJ-A0ZB 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0ZC                  TCGA-BJ-A0ZE 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0ZG                  TCGA-BJ-A0ZJ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A18Y                  TCGA-BJ-A18Z 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A190                  TCGA-BJ-A191 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A192                  TCGA-BJ-A28R 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A28S                  TCGA-BJ-A28T 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A28V                  TCGA-BJ-A28W 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A28Z                  TCGA-BJ-A290 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A291                  TCGA-BJ-A2N7 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A2N9                  TCGA-BJ-A2NA 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A2P4                  TCGA-BJ-A3EZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A3F0                  TCGA-CE-A13K 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-CE-A27D                  TCGA-CE-A3MD 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-CE-A3ME                  TCGA-DE-A0Y2 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DE-A2OL                  TCGA-DE-A3KN 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13M                  TCGA-DJ-A13O 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13R                  TCGA-DJ-A13S 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13V                  TCGA-DJ-A13W 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13X                  TCGA-DJ-A1QD 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QE                  TCGA-DJ-A1QF 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QG                  TCGA-DJ-A1QI 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QL                  TCGA-DJ-A1QM 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QN                  TCGA-DJ-A1QO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PN                  TCGA-DJ-A2PO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PP                  TCGA-DJ-A2PQ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PR                  TCGA-DJ-A2PS 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PU                  TCGA-DJ-A2PV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PW                  TCGA-DJ-A2PY 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PZ                  TCGA-DJ-A2Q0 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q1                  TCGA-DJ-A2Q2 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q4                  TCGA-DJ-A2Q5 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q6                  TCGA-DJ-A2Q7 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q9                  TCGA-DJ-A2QA 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2QB                  TCGA-DJ-A2QC 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DO-A1JZ                  TCGA-DO-A1K0 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-E3-A3DY                  TCGA-E3-A3DZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-E3-A3E0                  TCGA-E3-A3E1 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-E3-A3E3                  TCGA-E3-A3E5 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-E8-A2EA                  TCGA-E8-A2JQ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CL                  TCGA-EL-A3CM 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CN                  TCGA-EL-A3CO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CP                  TCGA-EL-A3CR 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CS                  TCGA-EL-A3CT 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CU                  TCGA-EL-A3CV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CW                  TCGA-EL-A3CX 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CY                  TCGA-EL-A3CZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3D0                  TCGA-EL-A3D1 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3D4                  TCGA-EL-A3D5 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3D6                  TCGA-EL-A3GO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GP                  TCGA-EL-A3GQ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GR                  TCGA-EL-A3GS 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GU                  TCGA-EL-A3GV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GW                  TCGA-EL-A3GX 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GY                  TCGA-EL-A3GZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H1                  TCGA-EL-A3H2 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H3                  TCGA-EL-A3H4 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H5                  TCGA-EL-A3H7 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H8                  TCGA-EL-A3MW 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3MX                  TCGA-EL-A3MY 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3MZ                  TCGA-EL-A3N2 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3N3                  TCGA-EM-A1CT 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A1CU                  TCGA-EM-A1CV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A1CW                  TCGA-EM-A1YA 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A1YB                  TCGA-EM-A1YC 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A1YD                  TCGA-EM-A1YE 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A22I                  TCGA-EM-A22J 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A22L                  TCGA-EM-A22M 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A22O                  TCGA-EM-A22Q 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CJ                  TCGA-EM-A2CK 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CL                  TCGA-EM-A2CN 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CO                  TCGA-EM-A2CP 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CQ                  TCGA-EM-A2CS 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CU                  TCGA-EM-A2OV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2OY                  TCGA-EM-A2P1 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3AI                  TCGA-EM-A3AJ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3AL                  TCGA-EM-A3AN 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3AO                  TCGA-EM-A3AP 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3FJ                  TCGA-EM-A3FL 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3FN                  TCGA-EM-A3FO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3FP                  TCGA-ET-A25G 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A25L                  TCGA-ET-A25M 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A25O                  TCGA-ET-A2MY 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A2MZ                  TCGA-ET-A2N0 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A2N1                  TCGA-ET-A2N4 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A2N5                  TCGA-ET-A39I 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A39J                  TCGA-ET-A39L 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A39M                  TCGA-ET-A39N 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A39P                  TCGA-ET-A39R 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A39T                  TCGA-ET-A3BN 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BP                  TCGA-ET-A3BS 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BT                  TCGA-ET-A3BU 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BV                  TCGA-ET-A3BW 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BX                  TCGA-ET-A3DO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3DP                  TCGA-ET-A3DS 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3DT                  TCGA-ET-A3DV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3DW                  TCGA-FE-A22Z 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A230                  TCGA-FE-A231 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A232                  TCGA-FE-A233 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A234                  TCGA-FE-A235 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A236                  TCGA-FE-A237 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A239                  TCGA-FE-A23A 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FY-A2QD                  TCGA-FY-A3BL 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FY-A3ON                  TCGA-GE-A2C6 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-H2-A2K9                  TCGA-IM-A3EB 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-IM-A3ED                  TCGA-J8-A3NZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-J8-A3O0                  TCGA-J8-A3O1 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
D6V4, multiclass
[1] "Remove cluster labels:" "DEL PEAK  8(7Q34) CNV" 
clus
      DEL PEAK  8(7Q34) CNV DEL PEAK  8(7Q34) WILD-TYPE 
                          1                         220 
                 TCGA-BJ-A0YZ                  TCGA-BJ-A0Z0 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0Z2                  TCGA-BJ-A0Z3 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0Z5                  TCGA-BJ-A0Z9 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0ZA                  TCGA-BJ-A0ZB 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0ZC                  TCGA-BJ-A0ZE 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0ZG                  TCGA-BJ-A0ZJ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A18Y                  TCGA-BJ-A18Z 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A190                  TCGA-BJ-A191 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A192                  TCGA-BJ-A28R 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A28S                  TCGA-BJ-A28T 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A28V                  TCGA-BJ-A28W 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A28Z                  TCGA-BJ-A290 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A291                  TCGA-BJ-A2N7 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A2N9                  TCGA-BJ-A2NA 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A2P4                  TCGA-BJ-A3EZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A3F0                  TCGA-CE-A13K 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-CE-A27D                  TCGA-CE-A3MD 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-CE-A3ME                  TCGA-DE-A0Y2 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DE-A2OL                  TCGA-DE-A3KN 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13M                  TCGA-DJ-A13O 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13R                  TCGA-DJ-A13S 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13V                  TCGA-DJ-A13W 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13X                  TCGA-DJ-A1QD 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QE                  TCGA-DJ-A1QF 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QG                  TCGA-DJ-A1QI 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QL                  TCGA-DJ-A1QM 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QN                  TCGA-DJ-A1QO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PN                  TCGA-DJ-A2PO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PP                  TCGA-DJ-A2PQ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PR                  TCGA-DJ-A2PS 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PU                  TCGA-DJ-A2PV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PW                  TCGA-DJ-A2PY 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PZ                  TCGA-DJ-A2Q0 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q1                  TCGA-DJ-A2Q2 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q4                  TCGA-DJ-A2Q5 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q6                  TCGA-DJ-A2Q7 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q9                  TCGA-DJ-A2QA 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2QB                  TCGA-DJ-A2QC 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DO-A1JZ                  TCGA-DO-A1K0 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-E3-A3DY                  TCGA-E3-A3DZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-E3-A3E0                  TCGA-E3-A3E1 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-E3-A3E3                  TCGA-E3-A3E5 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-E8-A2EA                  TCGA-E8-A2JQ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CL                  TCGA-EL-A3CM 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CN                  TCGA-EL-A3CO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CP                  TCGA-EL-A3CR 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CS                  TCGA-EL-A3CT 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CU                  TCGA-EL-A3CV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CW                  TCGA-EL-A3CX 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CY                  TCGA-EL-A3CZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3D0                  TCGA-EL-A3D1 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3D4                  TCGA-EL-A3D5 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3D6                  TCGA-EL-A3GO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GP                  TCGA-EL-A3GQ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GR                  TCGA-EL-A3GS 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GU                  TCGA-EL-A3GV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GW                  TCGA-EL-A3GX 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GY                  TCGA-EL-A3GZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H1                  TCGA-EL-A3H2 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H3                  TCGA-EL-A3H4 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H5                  TCGA-EL-A3H7 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H8                  TCGA-EL-A3MW 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3MX                  TCGA-EL-A3MY 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3MZ                  TCGA-EL-A3N2 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3N3                  TCGA-EM-A1CT 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A1CU                  TCGA-EM-A1CV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A1CW                  TCGA-EM-A1YA 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A1YB                  TCGA-EM-A1YC 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A1YD                  TCGA-EM-A1YE 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A22I                  TCGA-EM-A22J 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A22L                  TCGA-EM-A22M 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A22O                  TCGA-EM-A22Q 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CJ                  TCGA-EM-A2CK 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CL                  TCGA-EM-A2CN 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CO                  TCGA-EM-A2CP 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CQ                  TCGA-EM-A2CS 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CU                  TCGA-EM-A2OV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2OY                  TCGA-EM-A2P1 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3AI                  TCGA-EM-A3AJ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3AL                  TCGA-EM-A3AN 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3AO                  TCGA-EM-A3AP 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3FJ                  TCGA-EM-A3FL 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3FN                  TCGA-EM-A3FO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3FP                  TCGA-ET-A25G 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A25L                  TCGA-ET-A25M 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A25O                  TCGA-ET-A2MY 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A2MZ                  TCGA-ET-A2N0 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A2N1                  TCGA-ET-A2N4 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A2N5                  TCGA-ET-A39I 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A39J                  TCGA-ET-A39L 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A39M                  TCGA-ET-A39N 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A39P                  TCGA-ET-A39R 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A39T                  TCGA-ET-A3BN 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BP                  TCGA-ET-A3BS 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BT                  TCGA-ET-A3BU 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BV                  TCGA-ET-A3BW 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BX                  TCGA-ET-A3DO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3DP                  TCGA-ET-A3DS 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3DT                  TCGA-ET-A3DV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3DW                  TCGA-FE-A22Z 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A230                  TCGA-FE-A231 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A232                  TCGA-FE-A233 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A234                  TCGA-FE-A235 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A236                  TCGA-FE-A237 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A239                  TCGA-FE-A23A 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FY-A2QD                  TCGA-FY-A3BL 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FY-A3ON                  TCGA-GE-A2C6 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-H2-A2K9                  TCGA-IM-A3EB 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-IM-A3ED                  TCGA-J8-A3NZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-J8-A3O0                  TCGA-J8-A3O1 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
D6V5, multiclass
        clus
vv       DEL PEAK  8(7Q34) CNV DEL PEAK  8(7Q34) WILD-TYPE
  CLUS_1                     2                         148
  CLUS_2                     0                          55
  CLUS_3                     0                         114
  CLUS_4                     1                         160
D6V6, multiclass
        clus
vv       DEL PEAK  8(7Q34) CNV DEL PEAK  8(7Q34) WILD-TYPE
  CLUS_1                     1                         131
  CLUS_2                     1                         211
  CLUS_3                     0                          94
  CLUS_4                     1                          41
D6V7, multiclass
        clus
vv       DEL PEAK  8(7Q34) CNV DEL PEAK  8(7Q34) WILD-TYPE
  CLUS_1                     2                         148
  CLUS_2                     1                         172
  CLUS_3                     1                         169
D6V8, multiclass
        clus
vv       DEL PEAK  8(7Q34) CNV DEL PEAK  8(7Q34) WILD-TYPE
  CLUS_1                     2                         153
  CLUS_2                     1                         129
  CLUS_3                     1                         207
D6V9, multiclass
        clus
vv       DEL PEAK  8(7Q34) CNV DEL PEAK  8(7Q34) WILD-TYPE
  CLUS_1                     1                         162
  CLUS_2                     2                         167
  CLUS_3                     1                         160
D6V10, multiclass
        clus
vv       DEL PEAK  8(7Q34) CNV DEL PEAK  8(7Q34) WILD-TYPE
  CLUS_1                     1                         198
  CLUS_2                     1                         127
  CLUS_3                     2                         164

Clustering(7) Variable = Del Peak  9(8p23.2)
D7V1, multiclass
        clus
vv       DEL PEAK  9(8P23.2) CNV DEL PEAK  9(8P23.2) WILD-TYPE
  CLUS_1                       4                            30
  CLUS_2                       0                           383
  CLUS_3                       0                            77
D7V2, multiclass
        clus
vv       DEL PEAK  9(8P23.2) CNV DEL PEAK  9(8P23.2) WILD-TYPE
  CLUS_1                       4                           147
  CLUS_2                       0                            83
  CLUS_3                       0                           260
D7V3, multiclass
[1] "Remove cluster labels:"  "DEL PEAK  9(8P23.2) CNV"
clus
      DEL PEAK  9(8P23.2) CNV DEL PEAK  9(8P23.2) WILD-TYPE 
                            2                           219 
                   TCGA-BJ-A0YZ                    TCGA-BJ-A0Z0 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0Z2                    TCGA-BJ-A0Z3 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0Z5                    TCGA-BJ-A0Z9 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0ZA                    TCGA-BJ-A0ZB 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0ZC                    TCGA-BJ-A0ZE 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0ZG                    TCGA-BJ-A0ZJ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A18Y                    TCGA-BJ-A18Z 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A191                    TCGA-BJ-A192 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A28R                    TCGA-BJ-A28S 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A28T                    TCGA-BJ-A28V 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A28W                    TCGA-BJ-A28Z 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A290                    TCGA-BJ-A291 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A2N7                    TCGA-BJ-A2N9 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A2NA                    TCGA-BJ-A2P4 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A3EZ                    TCGA-BJ-A3F0 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-CE-A13K                    TCGA-CE-A27D 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-CE-A3MD                    TCGA-CE-A3ME 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DE-A0Y2                    TCGA-DE-A2OL 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DE-A3KN                    TCGA-DJ-A13M 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A13O                    TCGA-DJ-A13R 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A13S                    TCGA-DJ-A13V 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A13W                    TCGA-DJ-A13X 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QD                    TCGA-DJ-A1QE 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QF                    TCGA-DJ-A1QG 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QI                    TCGA-DJ-A1QL 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QM                    TCGA-DJ-A1QN 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QO                    TCGA-DJ-A2PN 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PO                    TCGA-DJ-A2PP 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PQ                    TCGA-DJ-A2PR 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PS                    TCGA-DJ-A2PU 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PV                    TCGA-DJ-A2PW 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PY                    TCGA-DJ-A2PZ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q1                    TCGA-DJ-A2Q2 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q4                    TCGA-DJ-A2Q5 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q6                    TCGA-DJ-A2Q7 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q8                    TCGA-DJ-A2Q9 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2QA                    TCGA-DJ-A2QB 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2QC                    TCGA-DO-A1JZ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DO-A1K0                    TCGA-E3-A3DY 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-E3-A3DZ                    TCGA-E3-A3E0 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-E3-A3E1                    TCGA-E3-A3E3 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-E3-A3E5                    TCGA-E8-A2EA 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-E8-A2JQ                    TCGA-EL-A3CL 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CM                    TCGA-EL-A3CN 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CO                    TCGA-EL-A3CP 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CR                    TCGA-EL-A3CS 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CT                    TCGA-EL-A3CU 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CV                    TCGA-EL-A3CW 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CX                    TCGA-EL-A3CY 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CZ                    TCGA-EL-A3D0 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3D1                    TCGA-EL-A3D4 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3D5                    TCGA-EL-A3D6 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GO                    TCGA-EL-A3GP 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GQ                    TCGA-EL-A3GR 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GS                    TCGA-EL-A3GU 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GV                    TCGA-EL-A3GW 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GX                    TCGA-EL-A3GY 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GZ                    TCGA-EL-A3H1 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3H2                    TCGA-EL-A3H3 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3H4                    TCGA-EL-A3H5 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3H7                    TCGA-EL-A3H8 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3MW                    TCGA-EL-A3MX 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3MY                    TCGA-EL-A3MZ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3N2                    TCGA-EL-A3N3 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1CT                    TCGA-EM-A1CU 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1CV                    TCGA-EM-A1CW 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1YA                    TCGA-EM-A1YB 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1YC                    TCGA-EM-A1YD 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1YE                    TCGA-EM-A22I 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A22J                    TCGA-EM-A22L 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A22M                    TCGA-EM-A22O 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A22Q                    TCGA-EM-A2CJ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CK                    TCGA-EM-A2CL 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CN                    TCGA-EM-A2CO 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CP                    TCGA-EM-A2CQ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CS                    TCGA-EM-A2CU 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2OV                    TCGA-EM-A2OY 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2P1                    TCGA-EM-A3AI 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3AJ                    TCGA-EM-A3AL 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3AN                    TCGA-EM-A3AO 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3AP                    TCGA-EM-A3FJ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3FL                    TCGA-EM-A3FN 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3FO                    TCGA-EM-A3FP 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A25G                    TCGA-ET-A25L 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A25M                    TCGA-ET-A25O 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A2MY                    TCGA-ET-A2MZ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A2N0                    TCGA-ET-A2N1 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A2N4                    TCGA-ET-A2N5 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39I                    TCGA-ET-A39J 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39L                    TCGA-ET-A39M 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39N                    TCGA-ET-A39P 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39R                    TCGA-ET-A39T 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BN                    TCGA-ET-A3BP 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BS                    TCGA-ET-A3BT 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BU                    TCGA-ET-A3BV 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BW                    TCGA-ET-A3BX 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3DO                    TCGA-ET-A3DP 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3DS                    TCGA-ET-A3DT 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3DV                    TCGA-ET-A3DW 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-FE-A22Z                    TCGA-FE-A230 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-FE-A231                    TCGA-FE-A232 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-FE-A233                    TCGA-FE-A234 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-FE-A235                    TCGA-FE-A236 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-FE-A237                    TCGA-FE-A239 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-FE-A23A                    TCGA-FY-A2QD 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-FY-A3BL                    TCGA-FY-A3ON 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-GE-A2C6                    TCGA-H2-A2K9 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-IM-A3EB                    TCGA-IM-A3ED 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-J8-A3NZ                    TCGA-J8-A3O0 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-J8-A3O1 
"DEL PEAK  9(8P23.2) WILD-TYPE" 
D7V4, multiclass
[1] "Remove cluster labels:"  "DEL PEAK  9(8P23.2) CNV"
clus
      DEL PEAK  9(8P23.2) CNV DEL PEAK  9(8P23.2) WILD-TYPE 
                            2                           219 
                   TCGA-BJ-A0YZ                    TCGA-BJ-A0Z0 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0Z2                    TCGA-BJ-A0Z3 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0Z5                    TCGA-BJ-A0Z9 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0ZA                    TCGA-BJ-A0ZB 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0ZC                    TCGA-BJ-A0ZE 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0ZG                    TCGA-BJ-A0ZJ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A18Y                    TCGA-BJ-A18Z 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A191                    TCGA-BJ-A192 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A28R                    TCGA-BJ-A28S 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A28T                    TCGA-BJ-A28V 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A28W                    TCGA-BJ-A28Z 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A290                    TCGA-BJ-A291 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A2N7                    TCGA-BJ-A2N9 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A2NA                    TCGA-BJ-A2P4 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A3EZ                    TCGA-BJ-A3F0 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-CE-A13K                    TCGA-CE-A27D 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-CE-A3MD                    TCGA-CE-A3ME 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DE-A0Y2                    TCGA-DE-A2OL 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DE-A3KN                    TCGA-DJ-A13M 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A13O                    TCGA-DJ-A13R 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A13S                    TCGA-DJ-A13V 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A13W                    TCGA-DJ-A13X 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QD                    TCGA-DJ-A1QE 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QF                    TCGA-DJ-A1QG 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QI                    TCGA-DJ-A1QL 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QM                    TCGA-DJ-A1QN 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QO                    TCGA-DJ-A2PN 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PO                    TCGA-DJ-A2PP 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PQ                    TCGA-DJ-A2PR 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PS                    TCGA-DJ-A2PU 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PV                    TCGA-DJ-A2PW 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PY                    TCGA-DJ-A2PZ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q1                    TCGA-DJ-A2Q2 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q4                    TCGA-DJ-A2Q5 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q6                    TCGA-DJ-A2Q7 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q8                    TCGA-DJ-A2Q9 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2QA                    TCGA-DJ-A2QB 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2QC                    TCGA-DO-A1JZ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DO-A1K0                    TCGA-E3-A3DY 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-E3-A3DZ                    TCGA-E3-A3E0 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-E3-A3E1                    TCGA-E3-A3E3 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-E3-A3E5                    TCGA-E8-A2EA 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-E8-A2JQ                    TCGA-EL-A3CL 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CM                    TCGA-EL-A3CN 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CO                    TCGA-EL-A3CP 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CR                    TCGA-EL-A3CS 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CT                    TCGA-EL-A3CU 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CV                    TCGA-EL-A3CW 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CX                    TCGA-EL-A3CY 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CZ                    TCGA-EL-A3D0 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3D1                    TCGA-EL-A3D4 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3D5                    TCGA-EL-A3D6 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GO                    TCGA-EL-A3GP 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GQ                    TCGA-EL-A3GR 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GS                    TCGA-EL-A3GU 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GV                    TCGA-EL-A3GW 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GX                    TCGA-EL-A3GY 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GZ                    TCGA-EL-A3H1 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3H2                    TCGA-EL-A3H3 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3H4                    TCGA-EL-A3H5 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3H7                    TCGA-EL-A3H8 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3MW                    TCGA-EL-A3MX 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3MY                    TCGA-EL-A3MZ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3N2                    TCGA-EL-A3N3 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1CT                    TCGA-EM-A1CU 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1CV                    TCGA-EM-A1CW 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1YA                    TCGA-EM-A1YB 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1YC                    TCGA-EM-A1YD 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1YE                    TCGA-EM-A22I 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A22J                    TCGA-EM-A22L 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A22M                    TCGA-EM-A22O 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A22Q                    TCGA-EM-A2CJ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CK                    TCGA-EM-A2CL 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CN                    TCGA-EM-A2CO 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CP                    TCGA-EM-A2CQ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CS                    TCGA-EM-A2CU 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2OV                    TCGA-EM-A2OY 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2P1                    TCGA-EM-A3AI 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3AJ                    TCGA-EM-A3AL 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3AN                    TCGA-EM-A3AO 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3AP                    TCGA-EM-A3FJ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3FL                    TCGA-EM-A3FN 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3FO                    TCGA-EM-A3FP 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A25G                    TCGA-ET-A25L 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A25M                    TCGA-ET-A25O 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A2MY                    TCGA-ET-A2MZ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A2N0                    TCGA-ET-A2N1 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A2N4                    TCGA-ET-A2N5 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39I                    TCGA-ET-A39J 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39L                    TCGA-ET-A39M 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39N                    TCGA-ET-A39P 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39R                    TCGA-ET-A39T 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BN                    TCGA-ET-A3BP 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BS                    TCGA-ET-A3BT 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BU                    TCGA-ET-A3BV 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BW                    TCGA-ET-A3BX 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3DO                    TCGA-ET-A3DP 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3DS                    TCGA-ET-A3DT 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3DV                    TCGA-ET-A3DW 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-FE-A22Z                    TCGA-FE-A230 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-FE-A231                    TCGA-FE-A232 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-FE-A233                    TCGA-FE-A234 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-FE-A235                    TCGA-FE-A236 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-FE-A237                    TCGA-FE-A239 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-FE-A23A                    TCGA-FY-A2QD 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-FY-A3BL                    TCGA-FY-A3ON 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-GE-A2C6                    TCGA-H2-A2K9 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-IM-A3EB                    TCGA-IM-A3ED 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-J8-A3NZ                    TCGA-J8-A3O0 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-J8-A3O1 
"DEL PEAK  9(8P23.2) WILD-TYPE" 
D7V5, multiclass
        clus
vv       DEL PEAK  9(8P23.2) CNV DEL PEAK  9(8P23.2) WILD-TYPE
  CLUS_1                       4                           146
  CLUS_2                       0                            55
  CLUS_3                       0                           114
  CLUS_4                       0                           161
D7V6, multiclass
        clus
vv       DEL PEAK  9(8P23.2) CNV DEL PEAK  9(8P23.2) WILD-TYPE
  CLUS_1                       4                           128
  CLUS_2                       0                           212
  CLUS_3                       0                            94
  CLUS_4                       0                            42
D7V7, multiclass
        clus
vv       DEL PEAK  9(8P23.2) CNV DEL PEAK  9(8P23.2) WILD-TYPE
  CLUS_1                       4                           146
  CLUS_2                       0                           173
  CLUS_3                       0                           170
D7V8, multiclass
        clus
vv       DEL PEAK  9(8P23.2) CNV DEL PEAK  9(8P23.2) WILD-TYPE
  CLUS_1                       0                           155
  CLUS_2                       4                           126
  CLUS_3                       0                           208
D7V9, multiclass
        clus
vv       DEL PEAK  9(8P23.2) CNV DEL PEAK  9(8P23.2) WILD-TYPE
  CLUS_1                       4                           159
  CLUS_2                       0                           169
  CLUS_3                       0                           161
D7V10, multiclass
        clus
vv       DEL PEAK  9(8P23.2) CNV DEL PEAK  9(8P23.2) WILD-TYPE
  CLUS_1                       0                           199
  CLUS_2                       4                           124
  CLUS_3                       0                           166

Clustering(8) Variable = Del Peak 10(8p22)
D8V1, multiclass
        clus
vv       DEL PEAK 10(8P22) CNV DEL PEAK 10(8P22) WILD-TYPE
  CLUS_1                     4                          30
  CLUS_2                     0                         383
  CLUS_3                     0                          77
D8V2, multiclass
        clus
vv       DEL PEAK 10(8P22) CNV DEL PEAK 10(8P22) WILD-TYPE
  CLUS_1                     4                         147
  CLUS_2                     0                          83
  CLUS_3                     0                         260
D8V3, multiclass
[1] "Remove cluster labels:" "DEL PEAK 10(8P22) CNV" 
clus
      DEL PEAK 10(8P22) CNV DEL PEAK 10(8P22) WILD-TYPE 
                          2                         219 
                 TCGA-BJ-A0YZ                  TCGA-BJ-A0Z0 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A0Z2                  TCGA-BJ-A0Z3 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A0Z5                  TCGA-BJ-A0Z9 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A0ZA                  TCGA-BJ-A0ZB 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A0ZC                  TCGA-BJ-A0ZE 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A0ZG                  TCGA-BJ-A0ZJ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A18Y                  TCGA-BJ-A18Z 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A191                  TCGA-BJ-A192 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A28R                  TCGA-BJ-A28S 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A28T                  TCGA-BJ-A28V 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A28W                  TCGA-BJ-A28Z 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A290                  TCGA-BJ-A291 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A2N7                  TCGA-BJ-A2N9 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A2NA                  TCGA-BJ-A2P4 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A3EZ                  TCGA-BJ-A3F0 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-CE-A13K                  TCGA-CE-A27D 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-CE-A3MD                  TCGA-CE-A3ME 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DE-A0Y2                  TCGA-DE-A2OL 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DE-A3KN                  TCGA-DJ-A13M 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A13O                  TCGA-DJ-A13R 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A13S                  TCGA-DJ-A13V 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A13W                  TCGA-DJ-A13X 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QD                  TCGA-DJ-A1QE 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QF                  TCGA-DJ-A1QG 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QI                  TCGA-DJ-A1QL 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QM                  TCGA-DJ-A1QN 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QO                  TCGA-DJ-A2PN 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PO                  TCGA-DJ-A2PP 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PQ                  TCGA-DJ-A2PR 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PS                  TCGA-DJ-A2PU 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PV                  TCGA-DJ-A2PW 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PY                  TCGA-DJ-A2PZ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q1                  TCGA-DJ-A2Q2 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q4                  TCGA-DJ-A2Q5 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q6                  TCGA-DJ-A2Q7 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q8                  TCGA-DJ-A2Q9 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2QA                  TCGA-DJ-A2QB 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2QC                  TCGA-DO-A1JZ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DO-A1K0                  TCGA-E3-A3DY 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-E3-A3DZ                  TCGA-E3-A3E0 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-E3-A3E1                  TCGA-E3-A3E3 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-E3-A3E5                  TCGA-E8-A2EA 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-E8-A2JQ                  TCGA-EL-A3CL 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3CM                  TCGA-EL-A3CN 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3CO                  TCGA-EL-A3CP 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3CR                  TCGA-EL-A3CS 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3CT                  TCGA-EL-A3CU 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3CV                  TCGA-EL-A3CW 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3CX                  TCGA-EL-A3CY 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3CZ                  TCGA-EL-A3D0 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3D1                  TCGA-EL-A3D4 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3D5                  TCGA-EL-A3D6 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3GO                  TCGA-EL-A3GP 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3GQ                  TCGA-EL-A3GR 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3GS                  TCGA-EL-A3GU 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3GV                  TCGA-EL-A3GW 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3GX                  TCGA-EL-A3GY 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3GZ                  TCGA-EL-A3H1 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3H2                  TCGA-EL-A3H3 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3H4                  TCGA-EL-A3H5 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3H7                  TCGA-EL-A3H8 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3MW                  TCGA-EL-A3MX 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3MY                  TCGA-EL-A3MZ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3N2                  TCGA-EL-A3N3 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A1CT                  TCGA-EM-A1CU 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A1CV                  TCGA-EM-A1CW 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A1YA                  TCGA-EM-A1YB 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A1YC                  TCGA-EM-A1YD 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A1YE                  TCGA-EM-A22I 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A22J                  TCGA-EM-A22L 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A22M                  TCGA-EM-A22O 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A22Q                  TCGA-EM-A2CJ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A2CK                  TCGA-EM-A2CL 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A2CN                  TCGA-EM-A2CO 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A2CP                  TCGA-EM-A2CQ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A2CS                  TCGA-EM-A2CU 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A2OV                  TCGA-EM-A2OY 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A2P1                  TCGA-EM-A3AI 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A3AJ                  TCGA-EM-A3AL 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A3AN                  TCGA-EM-A3AO 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A3AP                  TCGA-EM-A3FJ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A3FL                  TCGA-EM-A3FN 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A3FO                  TCGA-EM-A3FP 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A25G                  TCGA-ET-A25L 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A25M                  TCGA-ET-A25O 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A2MY                  TCGA-ET-A2MZ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A2N0                  TCGA-ET-A2N1 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A2N4                  TCGA-ET-A2N5 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A39I                  TCGA-ET-A39J 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A39L                  TCGA-ET-A39M 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A39N                  TCGA-ET-A39P 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A39R                  TCGA-ET-A39T 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A3BN                  TCGA-ET-A3BP 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A3BS                  TCGA-ET-A3BT 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A3BU                  TCGA-ET-A3BV 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A3BW                  TCGA-ET-A3BX 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A3DO                  TCGA-ET-A3DP 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A3DS                  TCGA-ET-A3DT 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A3DV                  TCGA-ET-A3DW 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-FE-A22Z                  TCGA-FE-A230 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-FE-A231                  TCGA-FE-A232 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-FE-A233                  TCGA-FE-A234 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-FE-A235                  TCGA-FE-A236 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-FE-A237                  TCGA-FE-A239 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-FE-A23A                  TCGA-FY-A2QD 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-FY-A3BL                  TCGA-FY-A3ON 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-GE-A2C6                  TCGA-H2-A2K9 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-IM-A3EB                  TCGA-IM-A3ED 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-J8-A3NZ                  TCGA-J8-A3O0 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-J8-A3O1 
"DEL PEAK 10(8P22) WILD-TYPE" 
D8V4, multiclass
[1] "Remove cluster labels:" "DEL PEAK 10(8P22) CNV" 
clus
      DEL PEAK 10(8P22) CNV DEL PEAK 10(8P22) WILD-TYPE 
                          2                         219 
                 TCGA-BJ-A0YZ                  TCGA-BJ-A0Z0 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A0Z2                  TCGA-BJ-A0Z3 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A0Z5                  TCGA-BJ-A0Z9 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A0ZA                  TCGA-BJ-A0ZB 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A0ZC                  TCGA-BJ-A0ZE 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A0ZG                  TCGA-BJ-A0ZJ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A18Y                  TCGA-BJ-A18Z 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A191                  TCGA-BJ-A192 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A28R                  TCGA-BJ-A28S 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A28T                  TCGA-BJ-A28V 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A28W                  TCGA-BJ-A28Z 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A290                  TCGA-BJ-A291 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A2N7                  TCGA-BJ-A2N9 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A2NA                  TCGA-BJ-A2P4 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A3EZ                  TCGA-BJ-A3F0 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-CE-A13K                  TCGA-CE-A27D 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-CE-A3MD                  TCGA-CE-A3ME 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DE-A0Y2                  TCGA-DE-A2OL 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DE-A3KN                  TCGA-DJ-A13M 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A13O                  TCGA-DJ-A13R 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A13S                  TCGA-DJ-A13V 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A13W                  TCGA-DJ-A13X 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QD                  TCGA-DJ-A1QE 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QF                  TCGA-DJ-A1QG 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QI                  TCGA-DJ-A1QL 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QM                  TCGA-DJ-A1QN 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QO                  TCGA-DJ-A2PN 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PO                  TCGA-DJ-A2PP 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PQ                  TCGA-DJ-A2PR 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PS                  TCGA-DJ-A2PU 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PV                  TCGA-DJ-A2PW 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PY                  TCGA-DJ-A2PZ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q1                  TCGA-DJ-A2Q2 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q4                  TCGA-DJ-A2Q5 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q6                  TCGA-DJ-A2Q7 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q8                  TCGA-DJ-A2Q9 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2QA                  TCGA-DJ-A2QB 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2QC                  TCGA-DO-A1JZ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DO-A1K0                  TCGA-E3-A3DY 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-E3-A3DZ                  TCGA-E3-A3E0 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-E3-A3E1                  TCGA-E3-A3E3 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-E3-A3E5                  TCGA-E8-A2EA 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-E8-A2JQ                  TCGA-EL-A3CL 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3CM                  TCGA-EL-A3CN 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3CO                  TCGA-EL-A3CP 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3CR                  TCGA-EL-A3CS 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3CT                  TCGA-EL-A3CU 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3CV                  TCGA-EL-A3CW 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3CX                  TCGA-EL-A3CY 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3CZ                  TCGA-EL-A3D0 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3D1                  TCGA-EL-A3D4 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3D5                  TCGA-EL-A3D6 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3GO                  TCGA-EL-A3GP 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3GQ                  TCGA-EL-A3GR 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3GS                  TCGA-EL-A3GU 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3GV                  TCGA-EL-A3GW 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3GX                  TCGA-EL-A3GY 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3GZ                  TCGA-EL-A3H1 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3H2                  TCGA-EL-A3H3 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3H4                  TCGA-EL-A3H5 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3H7                  TCGA-EL-A3H8 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3MW                  TCGA-EL-A3MX 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3MY                  TCGA-EL-A3MZ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3N2                  TCGA-EL-A3N3 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A1CT                  TCGA-EM-A1CU 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A1CV                  TCGA-EM-A1CW 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A1YA                  TCGA-EM-A1YB 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A1YC                  TCGA-EM-A1YD 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A1YE                  TCGA-EM-A22I 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A22J                  TCGA-EM-A22L 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A22M                  TCGA-EM-A22O 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A22Q                  TCGA-EM-A2CJ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A2CK                  TCGA-EM-A2CL 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A2CN                  TCGA-EM-A2CO 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A2CP                  TCGA-EM-A2CQ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A2CS                  TCGA-EM-A2CU 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A2OV                  TCGA-EM-A2OY 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A2P1                  TCGA-EM-A3AI 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A3AJ                  TCGA-EM-A3AL 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A3AN                  TCGA-EM-A3AO 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A3AP                  TCGA-EM-A3FJ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A3FL                  TCGA-EM-A3FN 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A3FO                  TCGA-EM-A3FP 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A25G                  TCGA-ET-A25L 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A25M                  TCGA-ET-A25O 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A2MY                  TCGA-ET-A2MZ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A2N0                  TCGA-ET-A2N1 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A2N4                  TCGA-ET-A2N5 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A39I                  TCGA-ET-A39J 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A39L                  TCGA-ET-A39M 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A39N                  TCGA-ET-A39P 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A39R                  TCGA-ET-A39T 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A3BN                  TCGA-ET-A3BP 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A3BS                  TCGA-ET-A3BT 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A3BU                  TCGA-ET-A3BV 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A3BW                  TCGA-ET-A3BX 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A3DO                  TCGA-ET-A3DP 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A3DS                  TCGA-ET-A3DT 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A3DV                  TCGA-ET-A3DW 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-FE-A22Z                  TCGA-FE-A230 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-FE-A231                  TCGA-FE-A232 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-FE-A233                  TCGA-FE-A234 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-FE-A235                  TCGA-FE-A236 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-FE-A237                  TCGA-FE-A239 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-FE-A23A                  TCGA-FY-A2QD 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-FY-A3BL                  TCGA-FY-A3ON 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-GE-A2C6                  TCGA-H2-A2K9 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-IM-A3EB                  TCGA-IM-A3ED 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-J8-A3NZ                  TCGA-J8-A3O0 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-J8-A3O1 
"DEL PEAK 10(8P22) WILD-TYPE" 
D8V5, multiclass
        clus
vv       DEL PEAK 10(8P22) CNV DEL PEAK 10(8P22) WILD-TYPE
  CLUS_1                     4                         146
  CLUS_2                     0                          55
  CLUS_3                     0                         114
  CLUS_4                     0                         161
D8V6, multiclass
        clus
vv       DEL PEAK 10(8P22) CNV DEL PEAK 10(8P22) WILD-TYPE
  CLUS_1                     4                         128
  CLUS_2                     0                         212
  CLUS_3                     0                          94
  CLUS_4                     0                          42
D8V7, multiclass
        clus
vv       DEL PEAK 10(8P22) CNV DEL PEAK 10(8P22) WILD-TYPE
  CLUS_1                     4                         146
  CLUS_2                     0                         173
  CLUS_3                     0                         170
D8V8, multiclass
        clus
vv       DEL PEAK 10(8P22) CNV DEL PEAK 10(8P22) WILD-TYPE
  CLUS_1                     0                         155
  CLUS_2                     4                         126
  CLUS_3                     0                         208
D8V9, multiclass
        clus
vv       DEL PEAK 10(8P22) CNV DEL PEAK 10(8P22) WILD-TYPE
  CLUS_1                     4                         159
  CLUS_2                     0                         169
  CLUS_3                     0                         161
D8V10, multiclass
        clus
vv       DEL PEAK 10(8P22) CNV DEL PEAK 10(8P22) WILD-TYPE
  CLUS_1                     0                         199
  CLUS_2                     4                         124
  CLUS_3                     0                         166

Clustering(9) Variable = Del Peak 11(8p12)
D9V1, multiclass
        clus
vv       DEL PEAK 11(8P12) CNV DEL PEAK 11(8P12) WILD-TYPE
  CLUS_1                     4                          30
  CLUS_2                     0                         383
  CLUS_3                     0                          77
D9V2, multiclass
        clus
vv       DEL PEAK 11(8P12) CNV DEL PEAK 11(8P12) WILD-TYPE
  CLUS_1                     4                         147
  CLUS_2                     0                          83
  CLUS_3                     0                         260
D9V3, multiclass
[1] "Remove cluster labels:" "DEL PEAK 11(8P12) CNV" 
clus
      DEL PEAK 11(8P12) CNV DEL PEAK 11(8P12) WILD-TYPE 
                          2                         219 
                 TCGA-BJ-A0YZ                  TCGA-BJ-A0Z0 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A0Z2                  TCGA-BJ-A0Z3 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A0Z5                  TCGA-BJ-A0Z9 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A0ZA                  TCGA-BJ-A0ZB 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A0ZC                  TCGA-BJ-A0ZE 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A0ZG                  TCGA-BJ-A0ZJ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A18Y                  TCGA-BJ-A18Z 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A191                  TCGA-BJ-A192 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A28R                  TCGA-BJ-A28S 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A28T                  TCGA-BJ-A28V 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A28W                  TCGA-BJ-A28Z 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A290                  TCGA-BJ-A291 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A2N7                  TCGA-BJ-A2N9 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A2NA                  TCGA-BJ-A2P4 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A3EZ                  TCGA-BJ-A3F0 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-CE-A13K                  TCGA-CE-A27D 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-CE-A3MD                  TCGA-CE-A3ME 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DE-A0Y2                  TCGA-DE-A2OL 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DE-A3KN                  TCGA-DJ-A13M 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A13O                  TCGA-DJ-A13R 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A13S                  TCGA-DJ-A13V 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A13W                  TCGA-DJ-A13X 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QD                  TCGA-DJ-A1QE 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QF                  TCGA-DJ-A1QG 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QI                  TCGA-DJ-A1QL 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QM                  TCGA-DJ-A1QN 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QO                  TCGA-DJ-A2PN 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PO                  TCGA-DJ-A2PP 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PQ                  TCGA-DJ-A2PR 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PS                  TCGA-DJ-A2PU 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PV                  TCGA-DJ-A2PW 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PY                  TCGA-DJ-A2PZ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q1                  TCGA-DJ-A2Q2 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q4                  TCGA-DJ-A2Q5 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q6                  TCGA-DJ-A2Q7 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q8                  TCGA-DJ-A2Q9 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2QA                  TCGA-DJ-A2QB 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2QC                  TCGA-DO-A1JZ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DO-A1K0                  TCGA-E3-A3DY 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-E3-A3DZ                  TCGA-E3-A3E0 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-E3-A3E1                  TCGA-E3-A3E3 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-E3-A3E5                  TCGA-E8-A2EA 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-E8-A2JQ                  TCGA-EL-A3CL 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3CM                  TCGA-EL-A3CN 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3CO                  TCGA-EL-A3CP 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3CR                  TCGA-EL-A3CS 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3CT                  TCGA-EL-A3CU 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3CV                  TCGA-EL-A3CW 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3CX                  TCGA-EL-A3CY 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3CZ                  TCGA-EL-A3D0 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3D1                  TCGA-EL-A3D4 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3D5                  TCGA-EL-A3D6 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3GO                  TCGA-EL-A3GP 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3GQ                  TCGA-EL-A3GR 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3GS                  TCGA-EL-A3GU 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3GV                  TCGA-EL-A3GW 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3GX                  TCGA-EL-A3GY 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3GZ                  TCGA-EL-A3H1 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3H2                  TCGA-EL-A3H3 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3H4                  TCGA-EL-A3H5 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3H7                  TCGA-EL-A3H8 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3MW                  TCGA-EL-A3MX 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3MY                  TCGA-EL-A3MZ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3N2                  TCGA-EL-A3N3 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A1CT                  TCGA-EM-A1CU 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A1CV                  TCGA-EM-A1CW 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A1YA                  TCGA-EM-A1YB 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A1YC                  TCGA-EM-A1YD 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A1YE                  TCGA-EM-A22I 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A22J                  TCGA-EM-A22L 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A22M                  TCGA-EM-A22O 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A22Q                  TCGA-EM-A2CJ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A2CK                  TCGA-EM-A2CL 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A2CN                  TCGA-EM-A2CO 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A2CP                  TCGA-EM-A2CQ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A2CS                  TCGA-EM-A2CU 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A2OV                  TCGA-EM-A2OY 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A2P1                  TCGA-EM-A3AI 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A3AJ                  TCGA-EM-A3AL 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A3AN                  TCGA-EM-A3AO 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A3AP                  TCGA-EM-A3FJ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A3FL                  TCGA-EM-A3FN 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A3FO                  TCGA-EM-A3FP 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A25G                  TCGA-ET-A25L 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A25M                  TCGA-ET-A25O 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A2MY                  TCGA-ET-A2MZ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A2N0                  TCGA-ET-A2N1 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A2N4                  TCGA-ET-A2N5 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A39I                  TCGA-ET-A39J 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A39L                  TCGA-ET-A39M 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A39N                  TCGA-ET-A39P 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A39R                  TCGA-ET-A39T 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A3BN                  TCGA-ET-A3BP 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A3BS                  TCGA-ET-A3BT 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A3BU                  TCGA-ET-A3BV 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A3BW                  TCGA-ET-A3BX 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A3DO                  TCGA-ET-A3DP 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A3DS                  TCGA-ET-A3DT 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A3DV                  TCGA-ET-A3DW 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-FE-A22Z                  TCGA-FE-A230 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-FE-A231                  TCGA-FE-A232 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-FE-A233                  TCGA-FE-A234 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-FE-A235                  TCGA-FE-A236 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-FE-A237                  TCGA-FE-A239 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-FE-A23A                  TCGA-FY-A2QD 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-FY-A3BL                  TCGA-FY-A3ON 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-GE-A2C6                  TCGA-H2-A2K9 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-IM-A3EB                  TCGA-IM-A3ED 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-J8-A3NZ                  TCGA-J8-A3O0 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-J8-A3O1 
"DEL PEAK 11(8P12) WILD-TYPE" 
D9V4, multiclass
[1] "Remove cluster labels:" "DEL PEAK 11(8P12) CNV" 
clus
      DEL PEAK 11(8P12) CNV DEL PEAK 11(8P12) WILD-TYPE 
                          2                         219 
                 TCGA-BJ-A0YZ                  TCGA-BJ-A0Z0 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A0Z2                  TCGA-BJ-A0Z3 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A0Z5                  TCGA-BJ-A0Z9 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A0ZA                  TCGA-BJ-A0ZB 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A0ZC                  TCGA-BJ-A0ZE 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A0ZG                  TCGA-BJ-A0ZJ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A18Y                  TCGA-BJ-A18Z 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A191                  TCGA-BJ-A192 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A28R                  TCGA-BJ-A28S 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A28T                  TCGA-BJ-A28V 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A28W                  TCGA-BJ-A28Z 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A290                  TCGA-BJ-A291 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A2N7                  TCGA-BJ-A2N9 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A2NA                  TCGA-BJ-A2P4 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A3EZ                  TCGA-BJ-A3F0 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-CE-A13K                  TCGA-CE-A27D 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-CE-A3MD                  TCGA-CE-A3ME 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DE-A0Y2                  TCGA-DE-A2OL 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DE-A3KN                  TCGA-DJ-A13M 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A13O                  TCGA-DJ-A13R 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A13S                  TCGA-DJ-A13V 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A13W                  TCGA-DJ-A13X 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QD                  TCGA-DJ-A1QE 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QF                  TCGA-DJ-A1QG 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QI                  TCGA-DJ-A1QL 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QM                  TCGA-DJ-A1QN 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QO                  TCGA-DJ-A2PN 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PO                  TCGA-DJ-A2PP 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PQ                  TCGA-DJ-A2PR 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PS                  TCGA-DJ-A2PU 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PV                  TCGA-DJ-A2PW 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PY                  TCGA-DJ-A2PZ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q1                  TCGA-DJ-A2Q2 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q4                  TCGA-DJ-A2Q5 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q6                  TCGA-DJ-A2Q7 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q8                  TCGA-DJ-A2Q9 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2QA                  TCGA-DJ-A2QB 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2QC                  TCGA-DO-A1JZ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DO-A1K0                  TCGA-E3-A3DY 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-E3-A3DZ                  TCGA-E3-A3E0 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-E3-A3E1                  TCGA-E3-A3E3 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-E3-A3E5                  TCGA-E8-A2EA 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-E8-A2JQ                  TCGA-EL-A3CL 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3CM                  TCGA-EL-A3CN 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3CO                  TCGA-EL-A3CP 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3CR                  TCGA-EL-A3CS 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3CT                  TCGA-EL-A3CU 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3CV                  TCGA-EL-A3CW 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3CX                  TCGA-EL-A3CY 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3CZ                  TCGA-EL-A3D0 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3D1                  TCGA-EL-A3D4 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3D5                  TCGA-EL-A3D6 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3GO                  TCGA-EL-A3GP 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3GQ                  TCGA-EL-A3GR 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3GS                  TCGA-EL-A3GU 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3GV                  TCGA-EL-A3GW 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3GX                  TCGA-EL-A3GY 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3GZ                  TCGA-EL-A3H1 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3H2                  TCGA-EL-A3H3 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3H4                  TCGA-EL-A3H5 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3H7                  TCGA-EL-A3H8 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3MW                  TCGA-EL-A3MX 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3MY                  TCGA-EL-A3MZ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3N2                  TCGA-EL-A3N3 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A1CT                  TCGA-EM-A1CU 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A1CV                  TCGA-EM-A1CW 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A1YA                  TCGA-EM-A1YB 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A1YC                  TCGA-EM-A1YD 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A1YE                  TCGA-EM-A22I 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A22J                  TCGA-EM-A22L 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A22M                  TCGA-EM-A22O 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A22Q                  TCGA-EM-A2CJ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A2CK                  TCGA-EM-A2CL 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A2CN                  TCGA-EM-A2CO 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A2CP                  TCGA-EM-A2CQ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A2CS                  TCGA-EM-A2CU 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A2OV                  TCGA-EM-A2OY 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A2P1                  TCGA-EM-A3AI 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A3AJ                  TCGA-EM-A3AL 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A3AN                  TCGA-EM-A3AO 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A3AP                  TCGA-EM-A3FJ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A3FL                  TCGA-EM-A3FN 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A3FO                  TCGA-EM-A3FP 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A25G                  TCGA-ET-A25L 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A25M                  TCGA-ET-A25O 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A2MY                  TCGA-ET-A2MZ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A2N0                  TCGA-ET-A2N1 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A2N4                  TCGA-ET-A2N5 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A39I                  TCGA-ET-A39J 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A39L                  TCGA-ET-A39M 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A39N                  TCGA-ET-A39P 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A39R                  TCGA-ET-A39T 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A3BN                  TCGA-ET-A3BP 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A3BS                  TCGA-ET-A3BT 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A3BU                  TCGA-ET-A3BV 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A3BW                  TCGA-ET-A3BX 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A3DO                  TCGA-ET-A3DP 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A3DS                  TCGA-ET-A3DT 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A3DV                  TCGA-ET-A3DW 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-FE-A22Z                  TCGA-FE-A230 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-FE-A231                  TCGA-FE-A232 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-FE-A233                  TCGA-FE-A234 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-FE-A235                  TCGA-FE-A236 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-FE-A237                  TCGA-FE-A239 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-FE-A23A                  TCGA-FY-A2QD 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-FY-A3BL                  TCGA-FY-A3ON 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-GE-A2C6                  TCGA-H2-A2K9 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-IM-A3EB                  TCGA-IM-A3ED 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-J8-A3NZ                  TCGA-J8-A3O0 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-J8-A3O1 
"DEL PEAK 11(8P12) WILD-TYPE" 
D9V5, multiclass
        clus
vv       DEL PEAK 11(8P12) CNV DEL PEAK 11(8P12) WILD-TYPE
  CLUS_1                     4                         146
  CLUS_2                     0                          55
  CLUS_3                     0                         114
  CLUS_4                     0                         161
D9V6, multiclass
        clus
vv       DEL PEAK 11(8P12) CNV DEL PEAK 11(8P12) WILD-TYPE
  CLUS_1                     4                         128
  CLUS_2                     0                         212
  CLUS_3                     0                          94
  CLUS_4                     0                          42
D9V7, multiclass
        clus
vv       DEL PEAK 11(8P12) CNV DEL PEAK 11(8P12) WILD-TYPE
  CLUS_1                     4                         146
  CLUS_2                     0                         173
  CLUS_3                     0                         170
D9V8, multiclass
        clus
vv       DEL PEAK 11(8P12) CNV DEL PEAK 11(8P12) WILD-TYPE
  CLUS_1                     0                         155
  CLUS_2                     4                         126
  CLUS_3                     0                         208
D9V9, multiclass
        clus
vv       DEL PEAK 11(8P12) CNV DEL PEAK 11(8P12) WILD-TYPE
  CLUS_1                     4                         159
  CLUS_2                     0                         169
  CLUS_3                     0                         161
D9V10, multiclass
        clus
vv       DEL PEAK 11(8P12) CNV DEL PEAK 11(8P12) WILD-TYPE
  CLUS_1                     0                         199
  CLUS_2                     4                         124
  CLUS_3                     0                         166

Clustering(10) Variable = Del Peak 12(8q24.22)
D10V1, multiclass
        clus
vv       DEL PEAK 12(8Q24.22) CNV DEL PEAK 12(8Q24.22) WILD-TYPE
  CLUS_1                        5                             29
  CLUS_2                        2                            381
  CLUS_3                        0                             77
D10V2, multiclass
        clus
vv       DEL PEAK 12(8Q24.22) CNV DEL PEAK 12(8Q24.22) WILD-TYPE
  CLUS_1                        7                            144
  CLUS_2                        0                             83
  CLUS_3                        0                            260
D10V3, multiclass
        clus
vv       DEL PEAK 12(8Q24.22) CNV DEL PEAK 12(8Q24.22) WILD-TYPE
  CLUS_1                        1                             60
  CLUS_2                        2                             77
  CLUS_3                        1                             80
D10V4, multiclass
        clus
vv       DEL PEAK 12(8Q24.22) CNV DEL PEAK 12(8Q24.22) WILD-TYPE
  CLUS_1                        2                             29
  CLUS_2                        0                             94
  CLUS_3                        2                             94
D10V5, multiclass
        clus
vv       DEL PEAK 12(8Q24.22) CNV DEL PEAK 12(8Q24.22) WILD-TYPE
  CLUS_1                        7                            143
  CLUS_2                        0                             55
  CLUS_3                        0                            114
  CLUS_4                        0                            161
D10V6, multiclass
        clus
vv       DEL PEAK 12(8Q24.22) CNV DEL PEAK 12(8Q24.22) WILD-TYPE
  CLUS_1                        7                            125
  CLUS_2                        0                            212
  CLUS_3                        0                             94
  CLUS_4                        0                             42
D10V7, multiclass
        clus
vv       DEL PEAK 12(8Q24.22) CNV DEL PEAK 12(8Q24.22) WILD-TYPE
  CLUS_1                        7                            143
  CLUS_2                        0                            173
  CLUS_3                        0                            170
D10V8, multiclass
        clus
vv       DEL PEAK 12(8Q24.22) CNV DEL PEAK 12(8Q24.22) WILD-TYPE
  CLUS_1                        0                            155
  CLUS_2                        7                            123
  CLUS_3                        0                            208
D10V9, multiclass
        clus
vv       DEL PEAK 12(8Q24.22) CNV DEL PEAK 12(8Q24.22) WILD-TYPE
  CLUS_1                        7                            156
  CLUS_2                        0                            169
  CLUS_3                        0                            161
D10V10, multiclass
        clus
vv       DEL PEAK 12(8Q24.22) CNV DEL PEAK 12(8Q24.22) WILD-TYPE
  CLUS_1                        0                            199
  CLUS_2                        7                            121
  CLUS_3                        0                            166

Clustering(11) Variable = Del Peak 13(9q21.13)
D11V1, multiclass
        clus
vv       DEL PEAK 13(9Q21.13) CNV DEL PEAK 13(9Q21.13) WILD-TYPE
  CLUS_1                       15                             19
  CLUS_2                        7                            376
  CLUS_3                        1                             76
D11V2, multiclass
        clus
vv       DEL PEAK 13(9Q21.13) CNV DEL PEAK 13(9Q21.13) WILD-TYPE
  CLUS_1                       11                            140
  CLUS_2                        5                             78
  CLUS_3                        7                            253
D11V3, multiclass
        clus
vv       DEL PEAK 13(9Q21.13) CNV DEL PEAK 13(9Q21.13) WILD-TYPE
  CLUS_1                        0                             61
  CLUS_2                        4                             75
  CLUS_3                        3                             78
D11V4, multiclass
        clus
vv       DEL PEAK 13(9Q21.13) CNV DEL PEAK 13(9Q21.13) WILD-TYPE
  CLUS_1                        4                             27
  CLUS_2                        2                             92
  CLUS_3                        1                             95
D11V5, multiclass
        clus
vv       DEL PEAK 13(9Q21.13) CNV DEL PEAK 13(9Q21.13) WILD-TYPE
  CLUS_1                       11                            139
  CLUS_2                        4                             51
  CLUS_3                        3                            111
  CLUS_4                        4                            157
D11V6, multiclass
        clus
vv       DEL PEAK 13(9Q21.13) CNV DEL PEAK 13(9Q21.13) WILD-TYPE
  CLUS_1                       11                            121
  CLUS_2                        8                            204
  CLUS_3                        3                             91
  CLUS_4                        0                             42
D11V7, multiclass
        clus
vv       DEL PEAK 13(9Q21.13) CNV DEL PEAK 13(9Q21.13) WILD-TYPE
  CLUS_1                       10                            140
  CLUS_2                        2                            171
  CLUS_3                       11                            159
D11V8, multiclass
        clus
vv       DEL PEAK 13(9Q21.13) CNV DEL PEAK 13(9Q21.13) WILD-TYPE
  CLUS_1                        2                            153
  CLUS_2                       11                            119
  CLUS_3                       10                            198
D11V9, multiclass
        clus
vv       DEL PEAK 13(9Q21.13) CNV DEL PEAK 13(9Q21.13) WILD-TYPE
  CLUS_1                       10                            153
  CLUS_2                        2                            167
  CLUS_3                       11                            150
D11V10, multiclass
        clus
vv       DEL PEAK 13(9Q21.13) CNV DEL PEAK 13(9Q21.13) WILD-TYPE
  CLUS_1                       10                            189
  CLUS_2                       11                            117
  CLUS_3                        2                            164

Clustering(12) Variable = Del Peak 14(10q21.2)
D12V1, multiclass
        clus
vv       DEL PEAK 14(10Q21.2) CNV DEL PEAK 14(10Q21.2) WILD-TYPE
  CLUS_1                        5                             29
  CLUS_2                        6                            377
  CLUS_3                        0                             77
D12V2, multiclass
        clus
vv       DEL PEAK 14(10Q21.2) CNV DEL PEAK 14(10Q21.2) WILD-TYPE
  CLUS_1                        5                            146
  CLUS_2                        3                             80
  CLUS_3                        3                            257
D12V3, multiclass
        clus
vv       DEL PEAK 14(10Q21.2) CNV DEL PEAK 14(10Q21.2) WILD-TYPE
  CLUS_1                        3                             58
  CLUS_2                        0                             79
  CLUS_3                        2                             79
D12V4, multiclass
        clus
vv       DEL PEAK 14(10Q21.2) CNV DEL PEAK 14(10Q21.2) WILD-TYPE
  CLUS_1                        0                             31
  CLUS_2                        2                             92
  CLUS_3                        3                             93
D12V5, multiclass
        clus
vv       DEL PEAK 14(10Q21.2) CNV DEL PEAK 14(10Q21.2) WILD-TYPE
  CLUS_1                        6                            144
  CLUS_2                        2                             53
  CLUS_3                        3                            111
  CLUS_4                        0                            161
D12V6, multiclass
        clus
vv       DEL PEAK 14(10Q21.2) CNV DEL PEAK 14(10Q21.2) WILD-TYPE
  CLUS_1                        5                            127
  CLUS_2                        2                            210
  CLUS_3                        3                             91
  CLUS_4                        1                             41
D12V7, multiclass
        clus
vv       DEL PEAK 14(10Q21.2) CNV DEL PEAK 14(10Q21.2) WILD-TYPE
  CLUS_1                        6                            144
  CLUS_2                        2                            171
  CLUS_3                        3                            167
D12V8, multiclass
        clus
vv       DEL PEAK 14(10Q21.2) CNV DEL PEAK 14(10Q21.2) WILD-TYPE
  CLUS_1                        1                            154
  CLUS_2                        6                            124
  CLUS_3                        4                            204
D12V9, multiclass
        clus
vv       DEL PEAK 14(10Q21.2) CNV DEL PEAK 14(10Q21.2) WILD-TYPE
  CLUS_1                        7                            156
  CLUS_2                        1                            168
  CLUS_3                        3                            158
D12V10, multiclass
        clus
vv       DEL PEAK 14(10Q21.2) CNV DEL PEAK 14(10Q21.2) WILD-TYPE
  CLUS_1                        3                            196
  CLUS_2                        6                            122
  CLUS_3                        2                            164

Clustering(13) Variable = Del Peak 15(10q23.31)
D13V1, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) CNV DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                         6                              28
  CLUS_2                         5                             378
  CLUS_3                         0                              77
D13V2, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) CNV DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                         8                             143
  CLUS_2                         1                              82
  CLUS_3                         2                             258
D13V3, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) CNV DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                         4                              57
  CLUS_2                         0                              79
  CLUS_3                         1                              80
D13V4, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) CNV DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                         0                              31
  CLUS_2                         0                              94
  CLUS_3                         5                              91
D13V5, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) CNV DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                         9                             141
  CLUS_2                         0                              55
  CLUS_3                         2                             112
  CLUS_4                         0                             161
D13V6, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) CNV DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                         8                             124
  CLUS_2                         0                             212
  CLUS_3                         2                              92
  CLUS_4                         1                              41
D13V7, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) CNV DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                         8                             142
  CLUS_2                         1                             172
  CLUS_3                         2                             168
D13V8, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) CNV DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                         1                             154
  CLUS_2                         8                             122
  CLUS_3                         2                             206
D13V9, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) CNV DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                         9                             154
  CLUS_2                         0                             169
  CLUS_3                         2                             159
D13V10, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) CNV DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                         2                             197
  CLUS_2                         8                             120
  CLUS_3                         1                             165

Clustering(14) Variable = Del Peak 16(11p15.1)
D14V1, multiclass
        clus
vv       DEL PEAK 16(11P15.1) CNV DEL PEAK 16(11P15.1) WILD-TYPE
  CLUS_1                        6                             28
  CLUS_2                        0                            383
  CLUS_3                        1                             76
D14V2, multiclass
        clus
vv       DEL PEAK 16(11P15.1) CNV DEL PEAK 16(11P15.1) WILD-TYPE
  CLUS_1                        6                            145
  CLUS_2                        0                             83
  CLUS_3                        1                            259
D14V3, multiclass
        clus
vv       DEL PEAK 16(11P15.1) CNV DEL PEAK 16(11P15.1) WILD-TYPE
  CLUS_1                        1                             60
  CLUS_2                        0                             79
  CLUS_3                        2                             79
D14V4, multiclass
        clus
vv       DEL PEAK 16(11P15.1) CNV DEL PEAK 16(11P15.1) WILD-TYPE
  CLUS_1                        0                             31
  CLUS_2                        1                             93
  CLUS_3                        2                             94
D14V5, multiclass
        clus
vv       DEL PEAK 16(11P15.1) CNV DEL PEAK 16(11P15.1) WILD-TYPE
  CLUS_1                        6                            144
  CLUS_2                        1                             54
  CLUS_3                        0                            114
  CLUS_4                        0                            161
D14V6, multiclass
        clus
vv       DEL PEAK 16(11P15.1) CNV DEL PEAK 16(11P15.1) WILD-TYPE
  CLUS_1                        6                            126
  CLUS_2                        1                            211
  CLUS_3                        0                             94
  CLUS_4                        0                             42
D14V7, multiclass
        clus
vv       DEL PEAK 16(11P15.1) CNV DEL PEAK 16(11P15.1) WILD-TYPE
  CLUS_1                        6                            144
  CLUS_2                        0                            173
  CLUS_3                        1                            169
D14V8, multiclass
        clus
vv       DEL PEAK 16(11P15.1) CNV DEL PEAK 16(11P15.1) WILD-TYPE
  CLUS_1                        0                            155
  CLUS_2                        6                            124
  CLUS_3                        1                            207
D14V9, multiclass
        clus
vv       DEL PEAK 16(11P15.1) CNV DEL PEAK 16(11P15.1) WILD-TYPE
  CLUS_1                        6                            157
  CLUS_2                        0                            169
  CLUS_3                        1                            160
D14V10, multiclass
        clus
vv       DEL PEAK 16(11P15.1) CNV DEL PEAK 16(11P15.1) WILD-TYPE
  CLUS_1                        1                            198
  CLUS_2                        6                            122
  CLUS_3                        0                            166

Clustering(15) Variable = Del Peak 17(13q12.3)
D15V1, multiclass
        clus
vv       DEL PEAK 17(13Q12.3) CNV DEL PEAK 17(13Q12.3) WILD-TYPE
  CLUS_1                        4                             30
  CLUS_2                        9                            374
  CLUS_3                        2                             75
D15V2, multiclass
        clus
vv       DEL PEAK 17(13Q12.3) CNV DEL PEAK 17(13Q12.3) WILD-TYPE
  CLUS_1                       10                            141
  CLUS_2                        3                             80
  CLUS_3                        2                            258
D15V3, multiclass
        clus
vv       DEL PEAK 17(13Q12.3) CNV DEL PEAK 17(13Q12.3) WILD-TYPE
  CLUS_1                        1                             60
  CLUS_2                        1                             78
  CLUS_3                        4                             77
D15V4, multiclass
        clus
vv       DEL PEAK 17(13Q12.3) CNV DEL PEAK 17(13Q12.3) WILD-TYPE
  CLUS_1                        1                             30
  CLUS_2                        1                             93
  CLUS_3                        4                             92
D15V5, multiclass
        clus
vv       DEL PEAK 17(13Q12.3) CNV DEL PEAK 17(13Q12.3) WILD-TYPE
  CLUS_1                       10                            140
  CLUS_2                        2                             53
  CLUS_3                        2                            112
  CLUS_4                        0                            161
D15V6, multiclass
        clus
vv       DEL PEAK 17(13Q12.3) CNV DEL PEAK 17(13Q12.3) WILD-TYPE
  CLUS_1                        9                            123
  CLUS_2                        2                            210
  CLUS_3                        2                             92
  CLUS_4                        1                             41
D15V7, multiclass
        clus
vv       DEL PEAK 17(13Q12.3) CNV DEL PEAK 17(13Q12.3) WILD-TYPE
  CLUS_1                        9                            141
  CLUS_2                        3                            170
  CLUS_3                        3                            167
D15V8, multiclass
        clus
vv       DEL PEAK 17(13Q12.3) CNV DEL PEAK 17(13Q12.3) WILD-TYPE
  CLUS_1                        2                            153
  CLUS_2                        9                            121
  CLUS_3                        4                            204
D15V9, multiclass
        clus
vv       DEL PEAK 17(13Q12.3) CNV DEL PEAK 17(13Q12.3) WILD-TYPE
  CLUS_1                       10                            153
  CLUS_2                        2                            167
  CLUS_3                        3                            158
D15V10, multiclass
        clus
vv       DEL PEAK 17(13Q12.3) CNV DEL PEAK 17(13Q12.3) WILD-TYPE
  CLUS_1                        4                            195
  CLUS_2                        9                            119
  CLUS_3                        2                            164

Clustering(16) Variable = Del Peak 18(13q21.31)
D16V1, multiclass
        clus
vv       DEL PEAK 18(13Q21.31) CNV DEL PEAK 18(13Q21.31) WILD-TYPE
  CLUS_1                         4                              30
  CLUS_2                        10                             373
  CLUS_3                         3                              74
D16V2, multiclass
        clus
vv       DEL PEAK 18(13Q21.31) CNV DEL PEAK 18(13Q21.31) WILD-TYPE
  CLUS_1                        10                             141
  CLUS_2                         2                              81
  CLUS_3                         5                             255
D16V3, multiclass
        clus
vv       DEL PEAK 18(13Q21.31) CNV DEL PEAK 18(13Q21.31) WILD-TYPE
  CLUS_1                         1                              60
  CLUS_2                         2                              77
  CLUS_3                         7                              74
D16V4, multiclass
        clus
vv       DEL PEAK 18(13Q21.31) CNV DEL PEAK 18(13Q21.31) WILD-TYPE
  CLUS_1                         1                              30
  CLUS_2                         4                              90
  CLUS_3                         5                              91
D16V5, multiclass
        clus
vv       DEL PEAK 18(13Q21.31) CNV DEL PEAK 18(13Q21.31) WILD-TYPE
  CLUS_1                        10                             140
  CLUS_2                         1                              54
  CLUS_3                         5                             109
  CLUS_4                         0                             161
D16V6, multiclass
        clus
vv       DEL PEAK 18(13Q21.31) CNV DEL PEAK 18(13Q21.31) WILD-TYPE
  CLUS_1                        10                             122
  CLUS_2                         1                             211
  CLUS_3                         5                              89
  CLUS_4                         0                              42
D16V7, multiclass
        clus
vv       DEL PEAK 18(13Q21.31) CNV DEL PEAK 18(13Q21.31) WILD-TYPE
  CLUS_1                        10                             140
  CLUS_2                         6                             167
  CLUS_3                         1                             169
D16V8, multiclass
        clus
vv       DEL PEAK 18(13Q21.31) CNV DEL PEAK 18(13Q21.31) WILD-TYPE
  CLUS_1                         5                             150
  CLUS_2                        10                             120
  CLUS_3                         2                             206
D16V9, multiclass
        clus
vv       DEL PEAK 18(13Q21.31) CNV DEL PEAK 18(13Q21.31) WILD-TYPE
  CLUS_1                        11                             152
  CLUS_2                         5                             164
  CLUS_3                         1                             160
D16V10, multiclass
        clus
vv       DEL PEAK 18(13Q21.31) CNV DEL PEAK 18(13Q21.31) WILD-TYPE
  CLUS_1                         2                             197
  CLUS_2                        10                             118
  CLUS_3                         5                             161

Clustering(17) Variable = Del Peak 19(15q25.3)
D17V1, multiclass
        clus
vv       DEL PEAK 19(15Q25.3) CNV DEL PEAK 19(15Q25.3) WILD-TYPE
  CLUS_1                        4                             30
  CLUS_2                        3                            380
  CLUS_3                        1                             76
D17V2, multiclass
        clus
vv       DEL PEAK 19(15Q25.3) CNV DEL PEAK 19(15Q25.3) WILD-TYPE
  CLUS_1                        7                            144
  CLUS_2                        0                             83
  CLUS_3                        1                            259
D17V3, multiclass
        clus
vv       DEL PEAK 19(15Q25.3) CNV DEL PEAK 19(15Q25.3) WILD-TYPE
  CLUS_1                        0                             61
  CLUS_2                        2                             77
  CLUS_3                        3                             78
D17V4, multiclass
        clus
vv       DEL PEAK 19(15Q25.3) CNV DEL PEAK 19(15Q25.3) WILD-TYPE
  CLUS_1                        2                             29
  CLUS_2                        0                             94
  CLUS_3                        3                             93
D17V5, multiclass
        clus
vv       DEL PEAK 19(15Q25.3) CNV DEL PEAK 19(15Q25.3) WILD-TYPE
  CLUS_1                        7                            143
  CLUS_2                        0                             55
  CLUS_3                        0                            114
  CLUS_4                        1                            160
D17V6, multiclass
        clus
vv       DEL PEAK 19(15Q25.3) CNV DEL PEAK 19(15Q25.3) WILD-TYPE
  CLUS_1                        7                            125
  CLUS_2                        1                            211
  CLUS_3                        0                             94
  CLUS_4                        0                             42
D17V7, multiclass
        clus
vv       DEL PEAK 19(15Q25.3) CNV DEL PEAK 19(15Q25.3) WILD-TYPE
  CLUS_1                        7                            143
  CLUS_2                        1                            172
  CLUS_3                        0                            170
D17V8, multiclass
        clus
vv       DEL PEAK 19(15Q25.3) CNV DEL PEAK 19(15Q25.3) WILD-TYPE
  CLUS_1                        0                            155
  CLUS_2                        7                            123
  CLUS_3                        1                            207
D17V9, multiclass
        clus
vv       DEL PEAK 19(15Q25.3) CNV DEL PEAK 19(15Q25.3) WILD-TYPE
  CLUS_1                        7                            156
  CLUS_2                        1                            168
  CLUS_3                        0                            161
D17V10, multiclass
        clus
vv       DEL PEAK 19(15Q25.3) CNV DEL PEAK 19(15Q25.3) WILD-TYPE
  CLUS_1                        1                            198
  CLUS_2                        7                            121
  CLUS_3                        0                            166

Clustering(18) Variable = Del Peak 21(16q23.3)
D18V1, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) CNV DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                        2                             32
  CLUS_2                        3                            380
  CLUS_3                        1                             76
D18V2, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) CNV DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                        0                            151
  CLUS_2                        0                             83
  CLUS_3                        6                            254
D18V3, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) CNV DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                        0                             61
  CLUS_2                        2                             77
  CLUS_3                        3                             78
D18V4, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) CNV DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                        1                             30
  CLUS_2                        4                             90
  CLUS_3                        0                             96
D18V5, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) CNV DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                        0                            150
  CLUS_2                        2                             53
  CLUS_3                        2                            112
  CLUS_4                        2                            159
D18V6, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) CNV DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                        0                            132
  CLUS_2                        4                            208
  CLUS_3                        2                             92
  CLUS_4                        0                             42
D18V7, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) CNV DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                        0                            150
  CLUS_2                        2                            171
  CLUS_3                        4                            166
D18V8, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) CNV DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                        2                            153
  CLUS_2                        0                            130
  CLUS_3                        4                            204
D18V9, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) CNV DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                        1                            162
  CLUS_2                        1                            168
  CLUS_3                        4                            157
D18V10, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) CNV DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                        4                            195
  CLUS_2                        0                            128
  CLUS_3                        2                            164

Clustering(19) Variable = Del Peak 22(17p13.1)
D19V1, multiclass
        clus
vv       DEL PEAK 22(17P13.1) CNV DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                        4                             30
  CLUS_2                        4                            379
  CLUS_3                        0                             77
D19V2, multiclass
        clus
vv       DEL PEAK 22(17P13.1) CNV DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                        4                            147
  CLUS_2                        0                             83
  CLUS_3                        4                            256
D19V3, multiclass
        clus
vv       DEL PEAK 22(17P13.1) CNV DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                        1                             60
  CLUS_2                        1                             78
  CLUS_3                        1                             80
D19V4, multiclass
        clus
vv       DEL PEAK 22(17P13.1) CNV DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                        1                             30
  CLUS_2                        0                             94
  CLUS_3                        2                             94
D19V5, multiclass
        clus
vv       DEL PEAK 22(17P13.1) CNV DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                        4                            146
  CLUS_2                        0                             55
  CLUS_3                        1                            113
  CLUS_4                        3                            158
D19V6, multiclass
        clus
vv       DEL PEAK 22(17P13.1) CNV DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                        4                            128
  CLUS_2                        3                            209
  CLUS_3                        1                             93
  CLUS_4                        0                             42
D19V7, multiclass
        clus
vv       DEL PEAK 22(17P13.1) CNV DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                        4                            146
  CLUS_2                        1                            172
  CLUS_3                        3                            167
D19V8, multiclass
        clus
vv       DEL PEAK 22(17P13.1) CNV DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                        1                            154
  CLUS_2                        4                            126
  CLUS_3                        3                            205
D19V9, multiclass
        clus
vv       DEL PEAK 22(17P13.1) CNV DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                        4                            159
  CLUS_2                        2                            167
  CLUS_3                        2                            159
D19V10, multiclass
        clus
vv       DEL PEAK 22(17P13.1) CNV DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                        3                            196
  CLUS_2                        4                            124
  CLUS_3                        1                            165

Clustering(20) Variable = Del Peak 23(18p11.21)
D20V1, multiclass
        clus
vv       DEL PEAK 23(18P11.21) CNV DEL PEAK 23(18P11.21) WILD-TYPE
  CLUS_1                         3                              31
  CLUS_2                         0                             383
  CLUS_3                         1                              76
D20V2, multiclass
        clus
vv       DEL PEAK 23(18P11.21) CNV DEL PEAK 23(18P11.21) WILD-TYPE
  CLUS_1                         3                             148
  CLUS_2                         0                              83
  CLUS_3                         1                             259
D20V3, multiclass
        clus
vv       DEL PEAK 23(18P11.21) CNV DEL PEAK 23(18P11.21) WILD-TYPE
  CLUS_1                         1                              60
  CLUS_2                         1                              78
  CLUS_3                         1                              80
D20V4, multiclass
        clus
vv       DEL PEAK 23(18P11.21) CNV DEL PEAK 23(18P11.21) WILD-TYPE
  CLUS_1                         1                              30
  CLUS_2                         0                              94
  CLUS_3                         2                              94
D20V5, multiclass
        clus
vv       DEL PEAK 23(18P11.21) CNV DEL PEAK 23(18P11.21) WILD-TYPE
  CLUS_1                         3                             147
  CLUS_2                         0                              55
  CLUS_3                         1                             113
  CLUS_4                         0                             161
D20V6, multiclass
        clus
vv       DEL PEAK 23(18P11.21) CNV DEL PEAK 23(18P11.21) WILD-TYPE
  CLUS_1                         3                             129
  CLUS_2                         0                             212
  CLUS_3                         1                              93
  CLUS_4                         0                              42
D20V7, multiclass
        clus
vv       DEL PEAK 23(18P11.21) CNV DEL PEAK 23(18P11.21) WILD-TYPE
  CLUS_1                         3                             147
  CLUS_2                         1                             172
  CLUS_3                         0                             170
D20V8, multiclass
        clus
vv       DEL PEAK 23(18P11.21) CNV DEL PEAK 23(18P11.21) WILD-TYPE
  CLUS_1                         1                             154
  CLUS_2                         3                             127
  CLUS_3                         0                             208
D20V9, multiclass
        clus
vv       DEL PEAK 23(18P11.21) CNV DEL PEAK 23(18P11.21) WILD-TYPE
  CLUS_1                         4                             159
  CLUS_2                         0                             169
  CLUS_3                         0                             161
D20V10, multiclass
        clus
vv       DEL PEAK 23(18P11.21) CNV DEL PEAK 23(18P11.21) WILD-TYPE
  CLUS_1                         0                             199
  CLUS_2                         3                             125
  CLUS_3                         1                             165

Clustering(21) Variable = Del Peak 24(18q22.2)
D21V1, multiclass
        clus
vv       DEL PEAK 24(18Q22.2) CNV DEL PEAK 24(18Q22.2) WILD-TYPE
  CLUS_1                        3                             31
  CLUS_2                        1                            382
  CLUS_3                        1                             76
D21V2, multiclass
        clus
vv       DEL PEAK 24(18Q22.2) CNV DEL PEAK 24(18Q22.2) WILD-TYPE
  CLUS_1                        4                            147
  CLUS_2                        0                             83
  CLUS_3                        1                            259
D21V3, multiclass
        clus
vv       DEL PEAK 24(18Q22.2) CNV DEL PEAK 24(18Q22.2) WILD-TYPE
  CLUS_1                        1                             60
  CLUS_2                        1                             78
  CLUS_3                        2                             79
D21V4, multiclass
        clus
vv       DEL PEAK 24(18Q22.2) CNV DEL PEAK 24(18Q22.2) WILD-TYPE
  CLUS_1                        1                             30
  CLUS_2                        0                             94
  CLUS_3                        3                             93
D21V5, multiclass
        clus
vv       DEL PEAK 24(18Q22.2) CNV DEL PEAK 24(18Q22.2) WILD-TYPE
  CLUS_1                        4                            146
  CLUS_2                        0                             55
  CLUS_3                        1                            113
  CLUS_4                        0                            161
D21V6, multiclass
        clus
vv       DEL PEAK 24(18Q22.2) CNV DEL PEAK 24(18Q22.2) WILD-TYPE
  CLUS_1                        4                            128
  CLUS_2                        0                            212
  CLUS_3                        1                             93
  CLUS_4                        0                             42
D21V7, multiclass
        clus
vv       DEL PEAK 24(18Q22.2) CNV DEL PEAK 24(18Q22.2) WILD-TYPE
  CLUS_1                        4                            146
  CLUS_2                        1                            172
  CLUS_3                        0                            170
D21V8, multiclass
        clus
vv       DEL PEAK 24(18Q22.2) CNV DEL PEAK 24(18Q22.2) WILD-TYPE
  CLUS_1                        1                            154
  CLUS_2                        4                            126
  CLUS_3                        0                            208
D21V9, multiclass
        clus
vv       DEL PEAK 24(18Q22.2) CNV DEL PEAK 24(18Q22.2) WILD-TYPE
  CLUS_1                        5                            158
  CLUS_2                        0                            169
  CLUS_3                        0                            161
D21V10, multiclass
        clus
vv       DEL PEAK 24(18Q22.2) CNV DEL PEAK 24(18Q22.2) WILD-TYPE
  CLUS_1                        0                            199
  CLUS_2                        4                            124
  CLUS_3                        1                            165

Clustering(22) Variable = Del Peak 25(19p13.2)
D22V1, multiclass
        clus
vv       DEL PEAK 25(19P13.2) CNV DEL PEAK 25(19P13.2) WILD-TYPE
  CLUS_1                        3                             31
  CLUS_2                        2                            381
  CLUS_3                        1                             76
D22V2, multiclass
        clus
vv       DEL PEAK 25(19P13.2) CNV DEL PEAK 25(19P13.2) WILD-TYPE
  CLUS_1                        6                            145
  CLUS_2                        0                             83
  CLUS_3                        0                            260
D22V3, multiclass
        clus
vv       DEL PEAK 25(19P13.2) CNV DEL PEAK 25(19P13.2) WILD-TYPE
  CLUS_1                        2                             59
  CLUS_2                        1                             78
  CLUS_3                        1                             80
D22V4, multiclass
        clus
vv       DEL PEAK 25(19P13.2) CNV DEL PEAK 25(19P13.2) WILD-TYPE
  CLUS_1                        1                             30
  CLUS_2                        0                             94
  CLUS_3                        3                             93
D22V5, multiclass
        clus
vv       DEL PEAK 25(19P13.2) CNV DEL PEAK 25(19P13.2) WILD-TYPE
  CLUS_1                        6                            144
  CLUS_2                        0                             55
  CLUS_3                        0                            114
  CLUS_4                        0                            161
D22V6, multiclass
        clus
vv       DEL PEAK 25(19P13.2) CNV DEL PEAK 25(19P13.2) WILD-TYPE
  CLUS_1                        6                            126
  CLUS_2                        0                            212
  CLUS_3                        0                             94
  CLUS_4                        0                             42
D22V7, multiclass
        clus
vv       DEL PEAK 25(19P13.2) CNV DEL PEAK 25(19P13.2) WILD-TYPE
  CLUS_1                        6                            144
  CLUS_2                        0                            173
  CLUS_3                        0                            170
D22V8, multiclass
        clus
vv       DEL PEAK 25(19P13.2) CNV DEL PEAK 25(19P13.2) WILD-TYPE
  CLUS_1                        0                            155
  CLUS_2                        6                            124
  CLUS_3                        0                            208
D22V9, multiclass
        clus
vv       DEL PEAK 25(19P13.2) CNV DEL PEAK 25(19P13.2) WILD-TYPE
  CLUS_1                        6                            157
  CLUS_2                        0                            169
  CLUS_3                        0                            161
D22V10, multiclass
        clus
vv       DEL PEAK 25(19P13.2) CNV DEL PEAK 25(19P13.2) WILD-TYPE
  CLUS_1                        0                            199
  CLUS_2                        6                            122
  CLUS_3                        0                            166

Clustering(23) Variable = Del Peak 28(21q21.1)
D23V1, multiclass
        clus
vv       DEL PEAK 28(21Q21.1) CNV DEL PEAK 28(21Q21.1) WILD-TYPE
  CLUS_1                        5                             29
  CLUS_2                        2                            381
  CLUS_3                        2                             75
D23V2, multiclass
        clus
vv       DEL PEAK 28(21Q21.1) CNV DEL PEAK 28(21Q21.1) WILD-TYPE
  CLUS_1                        4                            147
  CLUS_2                        2                             81
  CLUS_3                        3                            257
D23V3, multiclass
        clus
vv       DEL PEAK 28(21Q21.1) CNV DEL PEAK 28(21Q21.1) WILD-TYPE
  CLUS_1                        1                             60
  CLUS_2                        3                             76
  CLUS_3                        0                             81
D23V4, multiclass
        clus
vv       DEL PEAK 28(21Q21.1) CNV DEL PEAK 28(21Q21.1) WILD-TYPE
  CLUS_1                        2                             29
  CLUS_2                        1                             93
  CLUS_3                        1                             95
D23V5, multiclass
        clus
vv       DEL PEAK 28(21Q21.1) CNV DEL PEAK 28(21Q21.1) WILD-TYPE
  CLUS_1                        4                            146
  CLUS_2                        2                             53
  CLUS_3                        1                            113
  CLUS_4                        2                            159
D23V6, multiclass
        clus
vv       DEL PEAK 28(21Q21.1) CNV DEL PEAK 28(21Q21.1) WILD-TYPE
  CLUS_1                        4                            128
  CLUS_2                        3                            209
  CLUS_3                        1                             93
  CLUS_4                        1                             41
D23V7, multiclass
        clus
vv       DEL PEAK 28(21Q21.1) CNV DEL PEAK 28(21Q21.1) WILD-TYPE
  CLUS_1                        4                            146
  CLUS_2                        0                            173
  CLUS_3                        5                            165
D23V8, multiclass
        clus
vv       DEL PEAK 28(21Q21.1) CNV DEL PEAK 28(21Q21.1) WILD-TYPE
  CLUS_1                        1                            154
  CLUS_2                        4                            126
  CLUS_3                        4                            204
D23V9, multiclass
        clus
vv       DEL PEAK 28(21Q21.1) CNV DEL PEAK 28(21Q21.1) WILD-TYPE
  CLUS_1                        4                            159
  CLUS_2                        0                            169
  CLUS_3                        5                            156
D23V10, multiclass
        clus
vv       DEL PEAK 28(21Q21.1) CNV DEL PEAK 28(21Q21.1) WILD-TYPE
  CLUS_1                        5                            194
  CLUS_2                        4                            124
  CLUS_3                        0                            166

Clustering(24) Variable = Del Peak 29(22q13.1)
D24V1, multiclass
        clus
vv       DEL PEAK 29(22Q13.1) CNV DEL PEAK 29(22Q13.1) WILD-TYPE
  CLUS_1                        8                             26
  CLUS_2                        0                            383
  CLUS_3                       77                              0
D24V2, multiclass
        clus
vv       DEL PEAK 29(22Q13.1) CNV DEL PEAK 29(22Q13.1) WILD-TYPE
  CLUS_1                       44                            107
  CLUS_2                        7                             76
  CLUS_3                       34                            226
D24V3, multiclass
        clus
vv       DEL PEAK 29(22Q13.1) CNV DEL PEAK 29(22Q13.1) WILD-TYPE
  CLUS_1                       15                             46
  CLUS_2                        9                             70
  CLUS_3                       13                             68
D24V4, multiclass
        clus
vv       DEL PEAK 29(22Q13.1) CNV DEL PEAK 29(22Q13.1) WILD-TYPE
  CLUS_1                        6                             25
  CLUS_2                       11                             83
  CLUS_3                       20                             76
D24V5, multiclass
        clus
vv       DEL PEAK 29(22Q13.1) CNV DEL PEAK 29(22Q13.1) WILD-TYPE
  CLUS_1                       42                            108
  CLUS_2                        6                             49
  CLUS_3                       26                             88
  CLUS_4                        7                            154
D24V6, multiclass
        clus
vv       DEL PEAK 29(22Q13.1) CNV DEL PEAK 29(22Q13.1) WILD-TYPE
  CLUS_1                       38                             94
  CLUS_2                       16                            196
  CLUS_3                       21                             73
  CLUS_4                        6                             36
D24V7, multiclass
        clus
vv       DEL PEAK 29(22Q13.1) CNV DEL PEAK 29(22Q13.1) WILD-TYPE
  CLUS_1                       40                            110
  CLUS_2                       24                            149
  CLUS_3                       21                            149
D24V8, multiclass
        clus
vv       DEL PEAK 29(22Q13.1) CNV DEL PEAK 29(22Q13.1) WILD-TYPE
  CLUS_1                       22                            133
  CLUS_2                       37                             93
  CLUS_3                       26                            182
D24V9, multiclass
        clus
vv       DEL PEAK 29(22Q13.1) CNV DEL PEAK 29(22Q13.1) WILD-TYPE
  CLUS_1                       48                            115
  CLUS_2                       18                            151
  CLUS_3                       19                            142
D24V10, multiclass
        clus
vv       DEL PEAK 29(22Q13.1) CNV DEL PEAK 29(22Q13.1) WILD-TYPE
  CLUS_1                       24                            175
  CLUS_2                       37                             91
  CLUS_3                       24                            142

Clustering(25) Variable = Del Peak 30(22q13.2)
D25V1, multiclass
        clus
vv       DEL PEAK 30(22Q13.2) CNV DEL PEAK 30(22Q13.2) WILD-TYPE
  CLUS_1                        8                             26
  CLUS_2                        0                            383
  CLUS_3                       77                              0
D25V2, multiclass
        clus
vv       DEL PEAK 30(22Q13.2) CNV DEL PEAK 30(22Q13.2) WILD-TYPE
  CLUS_1                       44                            107
  CLUS_2                        7                             76
  CLUS_3                       34                            226
D25V3, multiclass
        clus
vv       DEL PEAK 30(22Q13.2) CNV DEL PEAK 30(22Q13.2) WILD-TYPE
  CLUS_1                       15                             46
  CLUS_2                        9                             70
  CLUS_3                       13                             68
D25V4, multiclass
        clus
vv       DEL PEAK 30(22Q13.2) CNV DEL PEAK 30(22Q13.2) WILD-TYPE
  CLUS_1                        6                             25
  CLUS_2                       11                             83
  CLUS_3                       20                             76
D25V5, multiclass
        clus
vv       DEL PEAK 30(22Q13.2) CNV DEL PEAK 30(22Q13.2) WILD-TYPE
  CLUS_1                       42                            108
  CLUS_2                        6                             49
  CLUS_3                       26                             88
  CLUS_4                        7                            154
D25V6, multiclass
        clus
vv       DEL PEAK 30(22Q13.2) CNV DEL PEAK 30(22Q13.2) WILD-TYPE
  CLUS_1                       38                             94
  CLUS_2                       16                            196
  CLUS_3                       21                             73
  CLUS_4                        6                             36
D25V7, multiclass
        clus
vv       DEL PEAK 30(22Q13.2) CNV DEL PEAK 30(22Q13.2) WILD-TYPE
  CLUS_1                       40                            110
  CLUS_2                       24                            149
  CLUS_3                       21                            149
D25V8, multiclass
        clus
vv       DEL PEAK 30(22Q13.2) CNV DEL PEAK 30(22Q13.2) WILD-TYPE
  CLUS_1                       22                            133
  CLUS_2                       37                             93
  CLUS_3                       26                            182
D25V9, multiclass
        clus
vv       DEL PEAK 30(22Q13.2) CNV DEL PEAK 30(22Q13.2) WILD-TYPE
  CLUS_1                       48                            115
  CLUS_2                       18                            151
  CLUS_3                       19                            142
D25V10, multiclass
        clus
vv       DEL PEAK 30(22Q13.2) CNV DEL PEAK 30(22Q13.2) WILD-TYPE
  CLUS_1                       24                            175
  CLUS_2                       37                             91
  CLUS_3                       24                            142

Clustering(26) Variable = Del Peak 31(22q13.31)
D26V1, multiclass
        clus
vv       DEL PEAK 31(22Q13.31) CNV DEL PEAK 31(22Q13.31) WILD-TYPE
  CLUS_1                         8                              26
  CLUS_2                         0                             383
  CLUS_3                        77                               0
D26V2, multiclass
        clus
vv       DEL PEAK 31(22Q13.31) CNV DEL PEAK 31(22Q13.31) WILD-TYPE
  CLUS_1                        44                             107
  CLUS_2                         7                              76
  CLUS_3                        34                             226
D26V3, multiclass
        clus
vv       DEL PEAK 31(22Q13.31) CNV DEL PEAK 31(22Q13.31) WILD-TYPE
  CLUS_1                        15                              46
  CLUS_2                         9                              70
  CLUS_3                        13                              68
D26V4, multiclass
        clus
vv       DEL PEAK 31(22Q13.31) CNV DEL PEAK 31(22Q13.31) WILD-TYPE
  CLUS_1                         6                              25
  CLUS_2                        11                              83
  CLUS_3                        20                              76
D26V5, multiclass
        clus
vv       DEL PEAK 31(22Q13.31) CNV DEL PEAK 31(22Q13.31) WILD-TYPE
  CLUS_1                        42                             108
  CLUS_2                         6                              49
  CLUS_3                        26                              88
  CLUS_4                         7                             154
D26V6, multiclass
        clus
vv       DEL PEAK 31(22Q13.31) CNV DEL PEAK 31(22Q13.31) WILD-TYPE
  CLUS_1                        38                              94
  CLUS_2                        16                             196
  CLUS_3                        21                              73
  CLUS_4                         6                              36
D26V7, multiclass
        clus
vv       DEL PEAK 31(22Q13.31) CNV DEL PEAK 31(22Q13.31) WILD-TYPE
  CLUS_1                        40                             110
  CLUS_2                        24                             149
  CLUS_3                        21                             149
D26V8, multiclass
        clus
vv       DEL PEAK 31(22Q13.31) CNV DEL PEAK 31(22Q13.31) WILD-TYPE
  CLUS_1                        22                             133
  CLUS_2                        37                              93
  CLUS_3                        26                             182
D26V9, multiclass
        clus
vv       DEL PEAK 31(22Q13.31) CNV DEL PEAK 31(22Q13.31) WILD-TYPE
  CLUS_1                        48                             115
  CLUS_2                        18                             151
  CLUS_3                        19                             142
D26V10, multiclass
        clus
vv       DEL PEAK 31(22Q13.31) CNV DEL PEAK 31(22Q13.31) WILD-TYPE
  CLUS_1                        24                             175
  CLUS_2                        37                              91
  CLUS_3                        24                             142

Clustering(27) Variable = Del Peak 32(22q13.32)
D27V1, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) CNV DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                         8                              26
  CLUS_2                         1                             382
  CLUS_3                        77                               0
D27V2, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) CNV DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                        45                             106
  CLUS_2                         7                              76
  CLUS_3                        34                             226
D27V3, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) CNV DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                        15                              46
  CLUS_2                         9                              70
  CLUS_3                        13                              68
D27V4, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) CNV DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                         6                              25
  CLUS_2                        11                              83
  CLUS_3                        20                              76
D27V5, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) CNV DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                        43                             107
  CLUS_2                         6                              49
  CLUS_3                        26                              88
  CLUS_4                         7                             154
D27V6, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) CNV DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                        39                              93
  CLUS_2                        16                             196
  CLUS_3                        21                              73
  CLUS_4                         6                              36
D27V7, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) CNV DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                        41                             109
  CLUS_2                        24                             149
  CLUS_3                        21                             149
D27V8, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) CNV DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                        22                             133
  CLUS_2                        38                              92
  CLUS_3                        26                             182
D27V9, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) CNV DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                        49                             114
  CLUS_2                        18                             151
  CLUS_3                        19                             142
D27V10, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) CNV DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                        24                             175
  CLUS_2                        38                              90
  CLUS_3                        24                             142

Clustering(28) Variable = Del Peak 33(Xq22.1)
D28V1, multiclass
        clus
vv       DEL PEAK 33(XQ22.1) CNV DEL PEAK 33(XQ22.1) WILD-TYPE
  CLUS_1                       2                            32
  CLUS_2                       4                           379
  CLUS_3                       0                            77
D28V2, multiclass
        clus
vv       DEL PEAK 33(XQ22.1) CNV DEL PEAK 33(XQ22.1) WILD-TYPE
  CLUS_1                       3                           148
  CLUS_2                       1                            82
  CLUS_3                       2                           258
D28V3, multiclass
        clus
vv       DEL PEAK 33(XQ22.1) CNV DEL PEAK 33(XQ22.1) WILD-TYPE
  CLUS_1                       3                            58
  CLUS_2                       0                            79
  CLUS_3                       1                            80
D28V4, multiclass
        clus
vv       DEL PEAK 33(XQ22.1) CNV DEL PEAK 33(XQ22.1) WILD-TYPE
  CLUS_1                       0                            31
  CLUS_2                       0                            94
  CLUS_3                       4                            92
D28V5, multiclass
        clus
vv       DEL PEAK 33(XQ22.1) CNV DEL PEAK 33(XQ22.1) WILD-TYPE
  CLUS_1                       3                           147
  CLUS_2                       1                            54
  CLUS_3                       1                           113
  CLUS_4                       1                           160
D28V6, multiclass
        clus
vv       DEL PEAK 33(XQ22.1) CNV DEL PEAK 33(XQ22.1) WILD-TYPE
  CLUS_1                       3                           129
  CLUS_2                       2                           210
  CLUS_3                       1                            93
  CLUS_4                       0                            42
D28V7, multiclass
        clus
vv       DEL PEAK 33(XQ22.1) CNV DEL PEAK 33(XQ22.1) WILD-TYPE
  CLUS_1                       3                           147
  CLUS_2                       2                           171
  CLUS_3                       1                           169
D28V8, multiclass
        clus
vv       DEL PEAK 33(XQ22.1) CNV DEL PEAK 33(XQ22.1) WILD-TYPE
  CLUS_1                       2                           153
  CLUS_2                       3                           127
  CLUS_3                       1                           207
D28V9, multiclass
        clus
vv       DEL PEAK 33(XQ22.1) CNV DEL PEAK 33(XQ22.1) WILD-TYPE
  CLUS_1                       3                           160
  CLUS_2                       2                           167
  CLUS_3                       1                           160
D28V10, multiclass
        clus
vv       DEL PEAK 33(XQ22.1) CNV DEL PEAK 33(XQ22.1) WILD-TYPE
  CLUS_1                       1                           198
  CLUS_2                       3                           125
  CLUS_3                       2                           164

Clustering(29) Variable = Del Peak 34(Xq22.3)
D29V1, multiclass
        clus
vv       DEL PEAK 34(XQ22.3) CNV DEL PEAK 34(XQ22.3) WILD-TYPE
  CLUS_1                       2                            32
  CLUS_2                       2                           381
  CLUS_3                       0                            77
D29V2, multiclass
        clus
vv       DEL PEAK 34(XQ22.3) CNV DEL PEAK 34(XQ22.3) WILD-TYPE
  CLUS_1                       3                           148
  CLUS_2                       1                            82
  CLUS_3                       0                           260
D29V3, multiclass
        clus
vv       DEL PEAK 34(XQ22.3) CNV DEL PEAK 34(XQ22.3) WILD-TYPE
  CLUS_1                       2                            59
  CLUS_2                       0                            79
  CLUS_3                       1                            80
D29V4, multiclass
        clus
vv       DEL PEAK 34(XQ22.3) CNV DEL PEAK 34(XQ22.3) WILD-TYPE
  CLUS_1                       0                            31
  CLUS_2                       0                            94
  CLUS_3                       3                            93
D29V5, multiclass
        clus
vv       DEL PEAK 34(XQ22.3) CNV DEL PEAK 34(XQ22.3) WILD-TYPE
  CLUS_1                       3                           147
  CLUS_2                       1                            54
  CLUS_3                       0                           114
  CLUS_4                       0                           161
D29V6, multiclass
        clus
vv       DEL PEAK 34(XQ22.3) CNV DEL PEAK 34(XQ22.3) WILD-TYPE
  CLUS_1                       3                           129
  CLUS_2                       1                           211
  CLUS_3                       0                            94
  CLUS_4                       0                            42
D29V7, multiclass
        clus
vv       DEL PEAK 34(XQ22.3) CNV DEL PEAK 34(XQ22.3) WILD-TYPE
  CLUS_1                       3                           147
  CLUS_2                       1                           172
  CLUS_3                       0                           170
D29V8, multiclass
        clus
vv       DEL PEAK 34(XQ22.3) CNV DEL PEAK 34(XQ22.3) WILD-TYPE
  CLUS_1                       1                           154
  CLUS_2                       3                           127
  CLUS_3                       0                           208
D29V9, multiclass
        clus
vv       DEL PEAK 34(XQ22.3) CNV DEL PEAK 34(XQ22.3) WILD-TYPE
  CLUS_1                       3                           160
  CLUS_2                       1                           168
  CLUS_3                       0                           161
D29V10, multiclass
        clus
vv       DEL PEAK 34(XQ22.3) CNV DEL PEAK 34(XQ22.3) WILD-TYPE
  CLUS_1                       0                           199
  CLUS_2                       3                           125
  CLUS_3                       1                           165
                           V1                            V2 
                    "CN_CNMF"            "METHLYATION_CNMF" 
                           V3                            V4 
                  "RPPA_CNMF"          "RPPA_CHIERARCHICAL" 
                           V5                            V6 
               "MRNASEQ_CNMF"       "MRNASEQ_CHIERARCHICAL" 
                           V7                            V8 
                "MIRSEQ_CNMF"        "MIRSEQ_CHIERARCHICAL" 
                           V9                           V10 
         "MIRSEQ_MATURE_CNMF" "MIRSEQ_MATURE_CHIERARCHICAL" 
> q(save="no")
