
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_mutation_onlysig.3.4048/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_mutation_onlysig.3.4048/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/480674/THCA-TP.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering_new/THCA-TP/4474541/THCA-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ONLYSIG", "-oT=THCA-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=THCA-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=496, in cluster file=401, common to both=401
[1]   7 401
[1] "NRAS MUTATION ANALYSIS"
[1] 3
  NRAS MUTATED NRAS WILD-TYPE 
            34            367 
  NRAS MUTATED NRAS WILD-TYPE 
            34            367 
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
           240            161 
  BRAF MUTATED BRAF WILD-TYPE 
           240            161 
[1] "HRAS MUTATION ANALYSIS"
[1] 3
  HRAS MUTATED HRAS WILD-TYPE 
            14            387 
  HRAS MUTATED HRAS WILD-TYPE 
            14            387 
[1] "OTUD4 MUTATION ANALYSIS"
[1] 3
  OTUD4 MUTATED OTUD4 WILD-TYPE 
              5             396 
  OTUD4 MUTATED OTUD4 WILD-TYPE 
              5             396 
[1] "EIF1AX MUTATION ANALYSIS"
[1] 3
  EIF1AX MUTATED EIF1AX WILD-TYPE 
               6              395 
  EIF1AX MUTATED EIF1AX WILD-TYPE 
               6              395 
[1] "NUP93 MUTATION ANALYSIS"
[1] 3
  NUP93 MUTATED NUP93 WILD-TYPE 
              4             397 
  NUP93 MUTATED NUP93 WILD-TYPE 
              4             397 
[1] "NLRP6 MUTATION ANALYSIS"
[1] 3
  NLRP6 MUTATED NLRP6 WILD-TYPE 
              3             398 
  NLRP6 MUTATED NLRP6 WILD-TYPE 
              3             398 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 401 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 401 columns, 0 survival variables, and 10 non-survival variables.
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = NRAS MUTATION ANALYSIS
D1V1, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            1             25
  CLUS_2           20            293
  CLUS_3           11             49
D1V2, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1           34             93
  CLUS_2            0             70
  CLUS_3            0            204
D1V3, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            4             56
  CLUS_2            5             71
  CLUS_3            5             72
D1V4, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            5             26
  CLUS_2            0             90
  CLUS_3            9             83
D1V5, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1           34             91
  CLUS_2            0             46
  CLUS_3            0             91
  CLUS_4            0            128
D1V6, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1           34             78
  CLUS_2            0            171
  CLUS_3            0             76
  CLUS_4            0             31
D1V7, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1           33             97
  CLUS_2            0            140
  CLUS_3            1            129
D1V8, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            0            127
  CLUS_2           33             80
  CLUS_3            1            159
D1V9, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1           33            109
  CLUS_2            0            131
  CLUS_3            1            126
D1V10, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            1            150
  CLUS_2           33             78
  CLUS_3            0            138

Clustering(2) Variable = BRAF MUTATION ANALYSIS
D2V1, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            8             18
  CLUS_2          203            110
  CLUS_3           29             31
D2V2, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           19            108
  CLUS_2           42             28
  CLUS_3          179             25
D2V3, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           21             39
  CLUS_2           57             19
  CLUS_3           43             34
D2V4, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           16             15
  CLUS_2           73             17
  CLUS_3           32             60
D2V5, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           10            115
  CLUS_2           29             17
  CLUS_3           76             15
  CLUS_4          119              9
D2V6, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            5            107
  CLUS_2          151             20
  CLUS_3           58             18
  CLUS_4           20             11
D2V7, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           15            115
  CLUS_2          122             18
  CLUS_3          102             28
D2V8, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1          107             20
  CLUS_2            5            108
  CLUS_3          127             33
D2V9, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           23            119
  CLUS_2          117             14
  CLUS_3           99             28
D2V10, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1          122             29
  CLUS_2            5            106
  CLUS_3          112             26

Clustering(3) Variable = HRAS MUTATION ANALYSIS
D3V1, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            0             26
  CLUS_2            4            309
  CLUS_3           10             50
D3V2, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1           14            113
  CLUS_2            0             70
  CLUS_3            0            204
D3V3, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            9             51
  CLUS_2            1             75
  CLUS_3            0             77
D3V4, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            1             30
  CLUS_2            0             90
  CLUS_3            9             83
D3V5, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1           14            111
  CLUS_2            0             46
  CLUS_3            0             91
  CLUS_4            0            128
D3V6, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1           14             98
  CLUS_2            0            171
  CLUS_3            0             76
  CLUS_4            0             31
D3V7, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1           14            116
  CLUS_2            0            140
  CLUS_3            0            130
D3V8, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            0            127
  CLUS_2           14             99
  CLUS_3            0            160
D3V9, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1           14            128
  CLUS_2            0            131
  CLUS_3            0            127
D3V10, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            0            151
  CLUS_2           14             97
  CLUS_3            0            138

Clustering(4) Variable = OTUD4 MUTATION ANALYSIS
D4V1, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             5             308
  CLUS_3             0              60
D4V2, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             1              69
  CLUS_3             4             200
D4V3, multiclass
D4V4, multiclass
D4V5, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             0             125
  CLUS_2             1              45
  CLUS_3             4              87
  CLUS_4             0             128
D4V6, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             1             170
  CLUS_3             4              72
  CLUS_4             0              31
D4V7, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             2             138
  CLUS_3             2             128
D4V8, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             0             113
  CLUS_3             1             159
D4V9, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             0             142
  CLUS_2             2             129
  CLUS_3             3             124
D4V10, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             2             149
  CLUS_2             0             111
  CLUS_3             3             135

Clustering(5) Variable = EIF1AX MUTATION ANALYSIS
D5V1, multiclass
        clus
vv       EIF1AX MUTATED EIF1AX WILD-TYPE
  CLUS_1              0               26
  CLUS_2              6              307
  CLUS_3              0               60
D5V2, multiclass
        clus
vv       EIF1AX MUTATED EIF1AX WILD-TYPE
  CLUS_1              4              123
  CLUS_2              1               69
  CLUS_3              1              203
D5V3, multiclass
        clus
vv       EIF1AX MUTATED EIF1AX WILD-TYPE
  CLUS_1              3               57
  CLUS_2              1               75
  CLUS_3              1               76
D5V4, multiclass
        clus
vv       EIF1AX MUTATED EIF1AX WILD-TYPE
  CLUS_1              1               30
  CLUS_2              0               90
  CLUS_3              4               88
D5V5, multiclass
        clus
vv       EIF1AX MUTATED EIF1AX WILD-TYPE
  CLUS_1              4              121
  CLUS_2              1               45
  CLUS_3              1               90
  CLUS_4              0              128
D5V6, multiclass
        clus
vv       EIF1AX MUTATED EIF1AX WILD-TYPE
  CLUS_1              4              108
  CLUS_2              0              171
  CLUS_3              0               76
  CLUS_4              2               29
D5V7, multiclass
        clus
vv       EIF1AX MUTATED EIF1AX WILD-TYPE
  CLUS_1              4              126
  CLUS_2              1              139
  CLUS_3              1              129
D5V8, multiclass
        clus
vv       EIF1AX MUTATED EIF1AX WILD-TYPE
  CLUS_1              1              126
  CLUS_2              3              110
  CLUS_3              2              158
D5V9, multiclass
        clus
vv       EIF1AX MUTATED EIF1AX WILD-TYPE
  CLUS_1              4              138
  CLUS_2              1              130
  CLUS_3              1              126
D5V10, multiclass
        clus
vv       EIF1AX MUTATED EIF1AX WILD-TYPE
  CLUS_1              2              149
  CLUS_2              3              108
  CLUS_3              1              137

Clustering(6) Variable = NUP93 MUTATION ANALYSIS
D6V1, multiclass
        clus
vv       NUP93 MUTATED NUP93 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             4             309
  CLUS_3             0              60
D6V2, multiclass
        clus
vv       NUP93 MUTATED NUP93 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             0              70
  CLUS_3             3             201
D6V3, multiclass
[1] "Remove cluster labels:" "NUP93 MUTATED"         
clus
  NUP93 MUTATED NUP93 WILD-TYPE 
              2             211 
     TCGA-BJ-A0YZ      TCGA-BJ-A0Z0      TCGA-BJ-A0Z2      TCGA-BJ-A0Z3 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-BJ-A0Z9      TCGA-BJ-A0ZA      TCGA-BJ-A0ZB      TCGA-BJ-A0ZC 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-BJ-A0ZE      TCGA-BJ-A0ZG      TCGA-BJ-A0ZJ      TCGA-BJ-A18Y 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-BJ-A18Z      TCGA-BJ-A192      TCGA-BJ-A28R      TCGA-BJ-A28S 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-BJ-A28T      TCGA-BJ-A28V      TCGA-BJ-A28Z      TCGA-BJ-A290 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-BJ-A2N7      TCGA-BJ-A2N9      TCGA-BJ-A2NA      TCGA-BJ-A2P4 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-BJ-A3EZ      TCGA-BJ-A3F0      TCGA-CE-A13K      TCGA-CE-A27D 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-CE-A3MD      TCGA-CE-A3ME      TCGA-DE-A0Y2      TCGA-DE-A2OL 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DE-A3KN      TCGA-DJ-A13M      TCGA-DJ-A13O      TCGA-DJ-A13R 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A13S      TCGA-DJ-A13V      TCGA-DJ-A13W      TCGA-DJ-A13X 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A1QD      TCGA-DJ-A1QE      TCGA-DJ-A1QF      TCGA-DJ-A1QG 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A1QI      TCGA-DJ-A1QL      TCGA-DJ-A1QM      TCGA-DJ-A1QN 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A1QO      TCGA-DJ-A2PN      TCGA-DJ-A2PO      TCGA-DJ-A2PP 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A2PQ      TCGA-DJ-A2PR      TCGA-DJ-A2PS      TCGA-DJ-A2PU 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A2PV      TCGA-DJ-A2PW      TCGA-DJ-A2PY      TCGA-DJ-A2PZ 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A2Q0      TCGA-DJ-A2Q1      TCGA-DJ-A2Q2      TCGA-DJ-A2Q5 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A2Q6      TCGA-DJ-A2Q7      TCGA-DJ-A2Q8      TCGA-DJ-A2Q9 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A2QA      TCGA-DJ-A2QB      TCGA-DJ-A2QC      TCGA-DO-A1JZ 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DO-A1K0      TCGA-E3-A3DY      TCGA-E3-A3DZ      TCGA-E3-A3E0 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-E3-A3E1      TCGA-E3-A3E3      TCGA-E3-A3E5      TCGA-E8-A2EA 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3CL      TCGA-EL-A3CM      TCGA-EL-A3CN      TCGA-EL-A3CO 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3CP      TCGA-EL-A3CR      TCGA-EL-A3CS      TCGA-EL-A3CT 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3CU      TCGA-EL-A3CV      TCGA-EL-A3CW      TCGA-EL-A3CX 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3CY      TCGA-EL-A3CZ      TCGA-EL-A3D0      TCGA-EL-A3D1 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3D4      TCGA-EL-A3D5      TCGA-EL-A3D6      TCGA-EL-A3GO 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3GP      TCGA-EL-A3GQ      TCGA-EL-A3GR      TCGA-EL-A3GS 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3GU      TCGA-EL-A3GV      TCGA-EL-A3GW      TCGA-EL-A3GX 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3GY      TCGA-EL-A3GZ      TCGA-EL-A3H1      TCGA-EL-A3H2 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3H3      TCGA-EL-A3H4      TCGA-EL-A3H5      TCGA-EL-A3H7 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3H8      TCGA-EL-A3MW      TCGA-EL-A3MX      TCGA-EL-A3MY 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3MZ      TCGA-EL-A3N2      TCGA-EL-A3N3      TCGA-EM-A1CT 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A1CU      TCGA-EM-A1CV      TCGA-EM-A1CW      TCGA-EM-A1YA 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A1YB      TCGA-EM-A1YC      TCGA-EM-A1YD      TCGA-EM-A1YE 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A22I      TCGA-EM-A22J      TCGA-EM-A22L      TCGA-EM-A22M 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A22O      TCGA-EM-A22Q      TCGA-EM-A2CJ      TCGA-EM-A2CK 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A2CL      TCGA-EM-A2CN      TCGA-EM-A2CO      TCGA-EM-A2CP 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A2CQ      TCGA-EM-A2CR      TCGA-EM-A2CU      TCGA-EM-A2OV 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A2OY      TCGA-EM-A2P1      TCGA-EM-A3AI      TCGA-EM-A3AJ 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A3AL      TCGA-EM-A3AN      TCGA-EM-A3AO      TCGA-EM-A3AP 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A3FJ      TCGA-EM-A3FL      TCGA-EM-A3FN      TCGA-EM-A3FO 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A3FP      TCGA-ET-A25G      TCGA-ET-A25O      TCGA-ET-A2MY 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-ET-A2MZ      TCGA-ET-A2N0      TCGA-ET-A2N1      TCGA-ET-A2N4 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-ET-A2N5      TCGA-ET-A39I      TCGA-ET-A39J      TCGA-ET-A39L 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-ET-A39M      TCGA-ET-A39N      TCGA-ET-A39P      TCGA-ET-A39R 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-ET-A39T      TCGA-ET-A3BN      TCGA-ET-A3BP      TCGA-ET-A3BS 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-ET-A3BT      TCGA-ET-A3BU      TCGA-ET-A3BV      TCGA-ET-A3BW 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-ET-A3BX      TCGA-ET-A3DO      TCGA-ET-A3DP      TCGA-ET-A3DS 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-ET-A3DT      TCGA-ET-A3DV      TCGA-ET-A3DW      TCGA-FE-A22Z 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-FE-A230      TCGA-FE-A231      TCGA-FE-A232      TCGA-FE-A233 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-FE-A234      TCGA-FE-A235      TCGA-FE-A236      TCGA-FE-A237 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-FE-A23A      TCGA-FY-A2QD      TCGA-FY-A3BL      TCGA-FY-A3ON 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-GE-A2C6      TCGA-H2-A2K9      TCGA-IM-A3EB      TCGA-IM-A3ED 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-J8-A3NZ      TCGA-J8-A3O0      TCGA-J8-A3O1 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
D6V4, multiclass
[1] "Remove cluster labels:" "NUP93 MUTATED"         
clus
  NUP93 MUTATED NUP93 WILD-TYPE 
              2             211 
     TCGA-BJ-A0YZ      TCGA-BJ-A0Z0      TCGA-BJ-A0Z2      TCGA-BJ-A0Z3 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-BJ-A0Z9      TCGA-BJ-A0ZA      TCGA-BJ-A0ZB      TCGA-BJ-A0ZC 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-BJ-A0ZE      TCGA-BJ-A0ZG      TCGA-BJ-A0ZJ      TCGA-BJ-A18Y 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-BJ-A18Z      TCGA-BJ-A192      TCGA-BJ-A28R      TCGA-BJ-A28S 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-BJ-A28T      TCGA-BJ-A28V      TCGA-BJ-A28Z      TCGA-BJ-A290 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-BJ-A2N7      TCGA-BJ-A2N9      TCGA-BJ-A2NA      TCGA-BJ-A2P4 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-BJ-A3EZ      TCGA-BJ-A3F0      TCGA-CE-A13K      TCGA-CE-A27D 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-CE-A3MD      TCGA-CE-A3ME      TCGA-DE-A0Y2      TCGA-DE-A2OL 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DE-A3KN      TCGA-DJ-A13M      TCGA-DJ-A13O      TCGA-DJ-A13R 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A13S      TCGA-DJ-A13V      TCGA-DJ-A13W      TCGA-DJ-A13X 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A1QD      TCGA-DJ-A1QE      TCGA-DJ-A1QF      TCGA-DJ-A1QG 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A1QI      TCGA-DJ-A1QL      TCGA-DJ-A1QM      TCGA-DJ-A1QN 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A1QO      TCGA-DJ-A2PN      TCGA-DJ-A2PO      TCGA-DJ-A2PP 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A2PQ      TCGA-DJ-A2PR      TCGA-DJ-A2PS      TCGA-DJ-A2PU 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A2PV      TCGA-DJ-A2PW      TCGA-DJ-A2PY      TCGA-DJ-A2PZ 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A2Q0      TCGA-DJ-A2Q1      TCGA-DJ-A2Q2      TCGA-DJ-A2Q5 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A2Q6      TCGA-DJ-A2Q7      TCGA-DJ-A2Q8      TCGA-DJ-A2Q9 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A2QA      TCGA-DJ-A2QB      TCGA-DJ-A2QC      TCGA-DO-A1JZ 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DO-A1K0      TCGA-E3-A3DY      TCGA-E3-A3DZ      TCGA-E3-A3E0 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-E3-A3E1      TCGA-E3-A3E3      TCGA-E3-A3E5      TCGA-E8-A2EA 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3CL      TCGA-EL-A3CM      TCGA-EL-A3CN      TCGA-EL-A3CO 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3CP      TCGA-EL-A3CR      TCGA-EL-A3CS      TCGA-EL-A3CT 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3CU      TCGA-EL-A3CV      TCGA-EL-A3CW      TCGA-EL-A3CX 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3CY      TCGA-EL-A3CZ      TCGA-EL-A3D0      TCGA-EL-A3D1 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3D4      TCGA-EL-A3D5      TCGA-EL-A3D6      TCGA-EL-A3GO 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3GP      TCGA-EL-A3GQ      TCGA-EL-A3GR      TCGA-EL-A3GS 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3GU      TCGA-EL-A3GV      TCGA-EL-A3GW      TCGA-EL-A3GX 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3GY      TCGA-EL-A3GZ      TCGA-EL-A3H1      TCGA-EL-A3H2 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3H3      TCGA-EL-A3H4      TCGA-EL-A3H5      TCGA-EL-A3H7 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3H8      TCGA-EL-A3MW      TCGA-EL-A3MX      TCGA-EL-A3MY 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3MZ      TCGA-EL-A3N2      TCGA-EL-A3N3      TCGA-EM-A1CT 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A1CU      TCGA-EM-A1CV      TCGA-EM-A1CW      TCGA-EM-A1YA 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A1YB      TCGA-EM-A1YC      TCGA-EM-A1YD      TCGA-EM-A1YE 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A22I      TCGA-EM-A22J      TCGA-EM-A22L      TCGA-EM-A22M 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A22O      TCGA-EM-A22Q      TCGA-EM-A2CJ      TCGA-EM-A2CK 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A2CL      TCGA-EM-A2CN      TCGA-EM-A2CO      TCGA-EM-A2CP 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A2CQ      TCGA-EM-A2CR      TCGA-EM-A2CU      TCGA-EM-A2OV 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A2OY      TCGA-EM-A2P1      TCGA-EM-A3AI      TCGA-EM-A3AJ 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A3AL      TCGA-EM-A3AN      TCGA-EM-A3AO      TCGA-EM-A3AP 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A3FJ      TCGA-EM-A3FL      TCGA-EM-A3FN      TCGA-EM-A3FO 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A3FP      TCGA-ET-A25G      TCGA-ET-A25O      TCGA-ET-A2MY 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-ET-A2MZ      TCGA-ET-A2N0      TCGA-ET-A2N1      TCGA-ET-A2N4 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-ET-A2N5      TCGA-ET-A39I      TCGA-ET-A39J      TCGA-ET-A39L 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-ET-A39M      TCGA-ET-A39N      TCGA-ET-A39P      TCGA-ET-A39R 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-ET-A39T      TCGA-ET-A3BN      TCGA-ET-A3BP      TCGA-ET-A3BS 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-ET-A3BT      TCGA-ET-A3BU      TCGA-ET-A3BV      TCGA-ET-A3BW 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-ET-A3BX      TCGA-ET-A3DO      TCGA-ET-A3DP      TCGA-ET-A3DS 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-ET-A3DT      TCGA-ET-A3DV      TCGA-ET-A3DW      TCGA-FE-A22Z 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-FE-A230      TCGA-FE-A231      TCGA-FE-A232      TCGA-FE-A233 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-FE-A234      TCGA-FE-A235      TCGA-FE-A236      TCGA-FE-A237 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-FE-A23A      TCGA-FY-A2QD      TCGA-FY-A3BL      TCGA-FY-A3ON 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-GE-A2C6      TCGA-H2-A2K9      TCGA-IM-A3EB      TCGA-IM-A3ED 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-J8-A3NZ      TCGA-J8-A3O0      TCGA-J8-A3O1 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
D6V5, multiclass
        clus
vv       NUP93 MUTATED NUP93 WILD-TYPE
  CLUS_1             1             124
  CLUS_2             0              46
  CLUS_3             0              91
  CLUS_4             3             125
D6V6, multiclass
        clus
vv       NUP93 MUTATED NUP93 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3             168
  CLUS_3             0              76
  CLUS_4             0              31
D6V7, multiclass
        clus
vv       NUP93 MUTATED NUP93 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             2             138
  CLUS_3             1             129
D6V8, multiclass
        clus
vv       NUP93 MUTATED NUP93 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             1             112
  CLUS_3             2             158
D6V9, multiclass
        clus
vv       NUP93 MUTATED NUP93 WILD-TYPE
  CLUS_1             1             141
  CLUS_2             2             129
  CLUS_3             1             126
D6V10, multiclass
        clus
vv       NUP93 MUTATED NUP93 WILD-TYPE
  CLUS_1             2             149
  CLUS_2             1             110
  CLUS_3             1             137

Clustering(7) Variable = NLRP6 MUTATION ANALYSIS
D7V1, multiclass
        clus
vv       NLRP6 MUTATED NLRP6 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2             311
  CLUS_3             1              59
D7V2, multiclass
        clus
vv       NLRP6 MUTATED NLRP6 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             0              70
  CLUS_3             3             201
D7V3, multiclass
[1] "Remove cluster labels:" "NLRP6 MUTATED"         
clus
  NLRP6 MUTATED NLRP6 WILD-TYPE 
              1             212 
     TCGA-BJ-A0YZ      TCGA-BJ-A0Z0      TCGA-BJ-A0Z2      TCGA-BJ-A0Z3 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-BJ-A0Z9      TCGA-BJ-A0ZA      TCGA-BJ-A0ZB      TCGA-BJ-A0ZC 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-BJ-A0ZE      TCGA-BJ-A0ZG      TCGA-BJ-A0ZJ      TCGA-BJ-A18Y 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-BJ-A18Z      TCGA-BJ-A191      TCGA-BJ-A192      TCGA-BJ-A28R 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-BJ-A28S      TCGA-BJ-A28T      TCGA-BJ-A28V      TCGA-BJ-A28Z 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-BJ-A290      TCGA-BJ-A2N7      TCGA-BJ-A2N9      TCGA-BJ-A2NA 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-BJ-A2P4      TCGA-BJ-A3EZ      TCGA-BJ-A3F0      TCGA-CE-A13K 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-CE-A27D      TCGA-CE-A3MD      TCGA-CE-A3ME      TCGA-DE-A0Y2 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DE-A2OL      TCGA-DE-A3KN      TCGA-DJ-A13M      TCGA-DJ-A13O 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A13R      TCGA-DJ-A13S      TCGA-DJ-A13V      TCGA-DJ-A13W 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A13X      TCGA-DJ-A1QD      TCGA-DJ-A1QE      TCGA-DJ-A1QF 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A1QG      TCGA-DJ-A1QI      TCGA-DJ-A1QL      TCGA-DJ-A1QM 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A1QN      TCGA-DJ-A1QO      TCGA-DJ-A2PN      TCGA-DJ-A2PO 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A2PP      TCGA-DJ-A2PQ      TCGA-DJ-A2PR      TCGA-DJ-A2PS 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A2PU      TCGA-DJ-A2PV      TCGA-DJ-A2PW      TCGA-DJ-A2PY 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A2PZ      TCGA-DJ-A2Q0      TCGA-DJ-A2Q1      TCGA-DJ-A2Q2 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A2Q4      TCGA-DJ-A2Q5      TCGA-DJ-A2Q6      TCGA-DJ-A2Q7 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A2Q8      TCGA-DJ-A2Q9      TCGA-DJ-A2QA      TCGA-DJ-A2QB 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A2QC      TCGA-DO-A1JZ      TCGA-DO-A1K0      TCGA-E3-A3DY 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-E3-A3DZ      TCGA-E3-A3E0      TCGA-E3-A3E1      TCGA-E3-A3E3 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-E3-A3E5      TCGA-E8-A2EA      TCGA-EL-A3CL      TCGA-EL-A3CM 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3CN      TCGA-EL-A3CO      TCGA-EL-A3CP      TCGA-EL-A3CR 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3CS      TCGA-EL-A3CT      TCGA-EL-A3CU      TCGA-EL-A3CV 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3CW      TCGA-EL-A3CX      TCGA-EL-A3CY      TCGA-EL-A3CZ 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3D0      TCGA-EL-A3D1      TCGA-EL-A3D4      TCGA-EL-A3D5 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3D6      TCGA-EL-A3GO      TCGA-EL-A3GP      TCGA-EL-A3GQ 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3GR      TCGA-EL-A3GS      TCGA-EL-A3GU      TCGA-EL-A3GV 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3GW      TCGA-EL-A3GX      TCGA-EL-A3GY      TCGA-EL-A3GZ 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3H1      TCGA-EL-A3H2      TCGA-EL-A3H3      TCGA-EL-A3H4 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3H5      TCGA-EL-A3H7      TCGA-EL-A3H8      TCGA-EL-A3MW 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3MX      TCGA-EL-A3MY      TCGA-EL-A3MZ      TCGA-EL-A3N2 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3N3      TCGA-EM-A1CT      TCGA-EM-A1CU      TCGA-EM-A1CV 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A1CW      TCGA-EM-A1YA      TCGA-EM-A1YB      TCGA-EM-A1YC 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A1YD      TCGA-EM-A1YE      TCGA-EM-A22I      TCGA-EM-A22J 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A22L      TCGA-EM-A22M      TCGA-EM-A22O      TCGA-EM-A22Q 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A2CJ      TCGA-EM-A2CK      TCGA-EM-A2CL      TCGA-EM-A2CN 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A2CO      TCGA-EM-A2CP      TCGA-EM-A2CQ      TCGA-EM-A2CR 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A2CU      TCGA-EM-A2OV      TCGA-EM-A2OY      TCGA-EM-A2P1 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A3AI      TCGA-EM-A3AJ      TCGA-EM-A3AL      TCGA-EM-A3AN 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A3AO      TCGA-EM-A3AP      TCGA-EM-A3FJ      TCGA-EM-A3FL 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A3FN      TCGA-EM-A3FP      TCGA-ET-A25G      TCGA-ET-A25O 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-ET-A2MY      TCGA-ET-A2MZ      TCGA-ET-A2N0      TCGA-ET-A2N1 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-ET-A2N4      TCGA-ET-A2N5      TCGA-ET-A39I      TCGA-ET-A39J 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-ET-A39L      TCGA-ET-A39M      TCGA-ET-A39N      TCGA-ET-A39P 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-ET-A39R      TCGA-ET-A39T      TCGA-ET-A3BN      TCGA-ET-A3BP 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-ET-A3BS      TCGA-ET-A3BT      TCGA-ET-A3BU      TCGA-ET-A3BV 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-ET-A3BW      TCGA-ET-A3BX      TCGA-ET-A3DO      TCGA-ET-A3DP 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-ET-A3DS      TCGA-ET-A3DT      TCGA-ET-A3DV      TCGA-ET-A3DW 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-FE-A22Z      TCGA-FE-A230      TCGA-FE-A231      TCGA-FE-A232 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-FE-A233      TCGA-FE-A234      TCGA-FE-A235      TCGA-FE-A236 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-FE-A237      TCGA-FE-A23A      TCGA-FY-A2QD      TCGA-FY-A3BL 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-FY-A3ON      TCGA-GE-A2C6      TCGA-H2-A2K9      TCGA-IM-A3EB 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-IM-A3ED      TCGA-J8-A3NZ      TCGA-J8-A3O0      TCGA-J8-A3O1 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
D7V4, multiclass
[1] "Remove cluster labels:" "NLRP6 MUTATED"         
clus
  NLRP6 MUTATED NLRP6 WILD-TYPE 
              1             212 
     TCGA-BJ-A0YZ      TCGA-BJ-A0Z0      TCGA-BJ-A0Z2      TCGA-BJ-A0Z3 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-BJ-A0Z9      TCGA-BJ-A0ZA      TCGA-BJ-A0ZB      TCGA-BJ-A0ZC 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-BJ-A0ZE      TCGA-BJ-A0ZG      TCGA-BJ-A0ZJ      TCGA-BJ-A18Y 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-BJ-A18Z      TCGA-BJ-A191      TCGA-BJ-A192      TCGA-BJ-A28R 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-BJ-A28S      TCGA-BJ-A28T      TCGA-BJ-A28V      TCGA-BJ-A28Z 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-BJ-A290      TCGA-BJ-A2N7      TCGA-BJ-A2N9      TCGA-BJ-A2NA 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-BJ-A2P4      TCGA-BJ-A3EZ      TCGA-BJ-A3F0      TCGA-CE-A13K 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-CE-A27D      TCGA-CE-A3MD      TCGA-CE-A3ME      TCGA-DE-A0Y2 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DE-A2OL      TCGA-DE-A3KN      TCGA-DJ-A13M      TCGA-DJ-A13O 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A13R      TCGA-DJ-A13S      TCGA-DJ-A13V      TCGA-DJ-A13W 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A13X      TCGA-DJ-A1QD      TCGA-DJ-A1QE      TCGA-DJ-A1QF 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A1QG      TCGA-DJ-A1QI      TCGA-DJ-A1QL      TCGA-DJ-A1QM 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A1QN      TCGA-DJ-A1QO      TCGA-DJ-A2PN      TCGA-DJ-A2PO 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A2PP      TCGA-DJ-A2PQ      TCGA-DJ-A2PR      TCGA-DJ-A2PS 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A2PU      TCGA-DJ-A2PV      TCGA-DJ-A2PW      TCGA-DJ-A2PY 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A2PZ      TCGA-DJ-A2Q0      TCGA-DJ-A2Q1      TCGA-DJ-A2Q2 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A2Q4      TCGA-DJ-A2Q5      TCGA-DJ-A2Q6      TCGA-DJ-A2Q7 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A2Q8      TCGA-DJ-A2Q9      TCGA-DJ-A2QA      TCGA-DJ-A2QB 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A2QC      TCGA-DO-A1JZ      TCGA-DO-A1K0      TCGA-E3-A3DY 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-E3-A3DZ      TCGA-E3-A3E0      TCGA-E3-A3E1      TCGA-E3-A3E3 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-E3-A3E5      TCGA-E8-A2EA      TCGA-EL-A3CL      TCGA-EL-A3CM 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3CN      TCGA-EL-A3CO      TCGA-EL-A3CP      TCGA-EL-A3CR 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3CS      TCGA-EL-A3CT      TCGA-EL-A3CU      TCGA-EL-A3CV 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3CW      TCGA-EL-A3CX      TCGA-EL-A3CY      TCGA-EL-A3CZ 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3D0      TCGA-EL-A3D1      TCGA-EL-A3D4      TCGA-EL-A3D5 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3D6      TCGA-EL-A3GO      TCGA-EL-A3GP      TCGA-EL-A3GQ 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3GR      TCGA-EL-A3GS      TCGA-EL-A3GU      TCGA-EL-A3GV 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3GW      TCGA-EL-A3GX      TCGA-EL-A3GY      TCGA-EL-A3GZ 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3H1      TCGA-EL-A3H2      TCGA-EL-A3H3      TCGA-EL-A3H4 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3H5      TCGA-EL-A3H7      TCGA-EL-A3H8      TCGA-EL-A3MW 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3MX      TCGA-EL-A3MY      TCGA-EL-A3MZ      TCGA-EL-A3N2 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3N3      TCGA-EM-A1CT      TCGA-EM-A1CU      TCGA-EM-A1CV 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A1CW      TCGA-EM-A1YA      TCGA-EM-A1YB      TCGA-EM-A1YC 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A1YD      TCGA-EM-A1YE      TCGA-EM-A22I      TCGA-EM-A22J 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A22L      TCGA-EM-A22M      TCGA-EM-A22O      TCGA-EM-A22Q 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A2CJ      TCGA-EM-A2CK      TCGA-EM-A2CL      TCGA-EM-A2CN 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A2CO      TCGA-EM-A2CP      TCGA-EM-A2CQ      TCGA-EM-A2CR 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A2CU      TCGA-EM-A2OV      TCGA-EM-A2OY      TCGA-EM-A2P1 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A3AI      TCGA-EM-A3AJ      TCGA-EM-A3AL      TCGA-EM-A3AN 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A3AO      TCGA-EM-A3AP      TCGA-EM-A3FJ      TCGA-EM-A3FL 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A3FN      TCGA-EM-A3FP      TCGA-ET-A25G      TCGA-ET-A25O 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-ET-A2MY      TCGA-ET-A2MZ      TCGA-ET-A2N0      TCGA-ET-A2N1 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-ET-A2N4      TCGA-ET-A2N5      TCGA-ET-A39I      TCGA-ET-A39J 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-ET-A39L      TCGA-ET-A39M      TCGA-ET-A39N      TCGA-ET-A39P 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-ET-A39R      TCGA-ET-A39T      TCGA-ET-A3BN      TCGA-ET-A3BP 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-ET-A3BS      TCGA-ET-A3BT      TCGA-ET-A3BU      TCGA-ET-A3BV 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-ET-A3BW      TCGA-ET-A3BX      TCGA-ET-A3DO      TCGA-ET-A3DP 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-ET-A3DS      TCGA-ET-A3DT      TCGA-ET-A3DV      TCGA-ET-A3DW 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-FE-A22Z      TCGA-FE-A230      TCGA-FE-A231      TCGA-FE-A232 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-FE-A233      TCGA-FE-A234      TCGA-FE-A235      TCGA-FE-A236 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-FE-A237      TCGA-FE-A23A      TCGA-FY-A2QD      TCGA-FY-A3BL 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-FY-A3ON      TCGA-GE-A2C6      TCGA-H2-A2K9      TCGA-IM-A3EB 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-IM-A3ED      TCGA-J8-A3NZ      TCGA-J8-A3O0      TCGA-J8-A3O1 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
D7V5, multiclass
        clus
vv       NLRP6 MUTATED NLRP6 WILD-TYPE
  CLUS_1             0             125
  CLUS_2             0              46
  CLUS_3             2              89
  CLUS_4             1             127
D7V6, multiclass
        clus
vv       NLRP6 MUTATED NLRP6 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2             169
  CLUS_3             1              75
  CLUS_4             0              31
D7V7, multiclass
        clus
vv       NLRP6 MUTATED NLRP6 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             2             138
  CLUS_3             0             130
D7V8, multiclass
        clus
vv       NLRP6 MUTATED NLRP6 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             0             113
  CLUS_3             0             160
D7V9, multiclass
        clus
vv       NLRP6 MUTATED NLRP6 WILD-TYPE
  CLUS_1             1             141
  CLUS_2             2             129
  CLUS_3             0             127
D7V10, multiclass
        clus
vv       NLRP6 MUTATED NLRP6 WILD-TYPE
  CLUS_1             0             151
  CLUS_2             0             111
  CLUS_3             3             135
                           V1                            V2 
                    "CN_CNMF"            "METHLYATION_CNMF" 
                           V3                            V4 
                  "RPPA_CNMF"          "RPPA_CHIERARCHICAL" 
                           V5                            V6 
               "MRNASEQ_CNMF"       "MRNASEQ_CHIERARCHICAL" 
                           V7                            V8 
                "MIRSEQ_CNMF"        "MIRSEQ_CHIERARCHICAL" 
                           V9                           V10 
         "MIRSEQ_MATURE_CNMF" "MIRSEQ_MATURE_CHIERARCHICAL" 
> q(save="no")
