
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.4.4139/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.4.4139/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/480581/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering_new/UCEC-TP/4474554/UCEC-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=UCEC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=UCEC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=515, in cluster file=504, common to both=504
[1]  98 504
[1] "Amp Peak  1(1p35.2)"
[1] 3
      AMP PEAK  1(1P35.2) CNV AMP PEAK  1(1P35.2) WILD-TYPE 
                           54                           450 
      AMP PEAK  1(1P35.2) CNV AMP PEAK  1(1P35.2) WILD-TYPE 
                           54                           450 
[1] "Amp Peak  2(1p34.2)"
[1] 3
      AMP PEAK  2(1P34.2) CNV AMP PEAK  2(1P34.2) WILD-TYPE 
                           67                           437 
      AMP PEAK  2(1P34.2) CNV AMP PEAK  2(1P34.2) WILD-TYPE 
                           67                           437 
[1] "Amp Peak  3(1p22.3)"
[1] 3
      AMP PEAK  3(1P22.3) CNV AMP PEAK  3(1P22.3) WILD-TYPE 
                           84                           420 
      AMP PEAK  3(1P22.3) CNV AMP PEAK  3(1P22.3) WILD-TYPE 
                           84                           420 
[1] "Amp Peak  4(1q21.3)"
[1] 3
      AMP PEAK  4(1Q21.3) CNV AMP PEAK  4(1Q21.3) WILD-TYPE 
                          226                           278 
      AMP PEAK  4(1Q21.3) CNV AMP PEAK  4(1Q21.3) WILD-TYPE 
                          226                           278 
[1] "Amp Peak  5(1q22)"
[1] 3
      AMP PEAK  5(1Q22) CNV AMP PEAK  5(1Q22) WILD-TYPE 
                        238                         266 
      AMP PEAK  5(1Q22) CNV AMP PEAK  5(1Q22) WILD-TYPE 
                        238                         266 
[1] "Amp Peak  6(1q42.3)"
[1] 3
      AMP PEAK  6(1Q42.3) CNV AMP PEAK  6(1Q42.3) WILD-TYPE 
                          208                           296 
      AMP PEAK  6(1Q42.3) CNV AMP PEAK  6(1Q42.3) WILD-TYPE 
                          208                           296 
[1] "Amp Peak  7(2p24.3)"
[1] 3
      AMP PEAK  7(2P24.3) CNV AMP PEAK  7(2P24.3) WILD-TYPE 
                          113                           391 
      AMP PEAK  7(2P24.3) CNV AMP PEAK  7(2P24.3) WILD-TYPE 
                          113                           391 
[1] "Amp Peak  8(2q13)"
[1] 3
      AMP PEAK  8(2Q13) CNV AMP PEAK  8(2Q13) WILD-TYPE 
                        111                         393 
      AMP PEAK  8(2Q13) CNV AMP PEAK  8(2Q13) WILD-TYPE 
                        111                         393 
[1] "Amp Peak  9(3p25.1)"
[1] 3
      AMP PEAK  9(3P25.1) CNV AMP PEAK  9(3P25.1) WILD-TYPE 
                           71                           433 
      AMP PEAK  9(3P25.1) CNV AMP PEAK  9(3P25.1) WILD-TYPE 
                           71                           433 
[1] "Amp Peak 10(3p14.1)"
[1] 3
      AMP PEAK 10(3P14.1) CNV AMP PEAK 10(3P14.1) WILD-TYPE 
                           56                           448 
      AMP PEAK 10(3P14.1) CNV AMP PEAK 10(3P14.1) WILD-TYPE 
                           56                           448 
[1] "Amp Peak 11(3q26.2)"
[1] 3
      AMP PEAK 11(3Q26.2) CNV AMP PEAK 11(3Q26.2) WILD-TYPE 
                          160                           344 
      AMP PEAK 11(3Q26.2) CNV AMP PEAK 11(3Q26.2) WILD-TYPE 
                          160                           344 
[1] "Amp Peak 12(3q26.2)"
[1] 3
      AMP PEAK 12(3Q26.2) CNV AMP PEAK 12(3Q26.2) WILD-TYPE 
                          149                           355 
      AMP PEAK 12(3Q26.2) CNV AMP PEAK 12(3Q26.2) WILD-TYPE 
                          149                           355 
[1] "Amp Peak 13(4p16.3)"
[1] 3
      AMP PEAK 13(4P16.3) CNV AMP PEAK 13(4P16.3) WILD-TYPE 
                           46                           458 
      AMP PEAK 13(4P16.3) CNV AMP PEAK 13(4P16.3) WILD-TYPE 
                           46                           458 
[1] "Amp Peak 14(5p15.33)"
[1] 3
      AMP PEAK 14(5P15.33) CNV AMP PEAK 14(5P15.33) WILD-TYPE 
                            79                            425 
      AMP PEAK 14(5P15.33) CNV AMP PEAK 14(5P15.33) WILD-TYPE 
                            79                            425 
[1] "Amp Peak 15(5q35.3)"
[1] 3
      AMP PEAK 15(5Q35.3) CNV AMP PEAK 15(5Q35.3) WILD-TYPE 
                           48                           456 
      AMP PEAK 15(5Q35.3) CNV AMP PEAK 15(5Q35.3) WILD-TYPE 
                           48                           456 
[1] "Amp Peak 16(6p24.2)"
[1] 3
      AMP PEAK 16(6P24.2) CNV AMP PEAK 16(6P24.2) WILD-TYPE 
                          103                           401 
      AMP PEAK 16(6P24.2) CNV AMP PEAK 16(6P24.2) WILD-TYPE 
                          103                           401 
[1] "Amp Peak 17(6q25.1)"
[1] 3
      AMP PEAK 17(6Q25.1) CNV AMP PEAK 17(6Q25.1) WILD-TYPE 
                           79                           425 
      AMP PEAK 17(6Q25.1) CNV AMP PEAK 17(6Q25.1) WILD-TYPE 
                           79                           425 
[1] "Amp Peak 18(7q22.1)"
[1] 3
      AMP PEAK 18(7Q22.1) CNV AMP PEAK 18(7Q22.1) WILD-TYPE 
                           85                           419 
      AMP PEAK 18(7Q22.1) CNV AMP PEAK 18(7Q22.1) WILD-TYPE 
                           85                           419 
[1] "Amp Peak 19(8p11.21)"
[1] 3
      AMP PEAK 19(8P11.21) CNV AMP PEAK 19(8P11.21) WILD-TYPE 
                           149                            355 
      AMP PEAK 19(8P11.21) CNV AMP PEAK 19(8P11.21) WILD-TYPE 
                           149                            355 
[1] "Amp Peak 20(8q24.21)"
[1] 3
      AMP PEAK 20(8Q24.21) CNV AMP PEAK 20(8Q24.21) WILD-TYPE 
                           192                            312 
      AMP PEAK 20(8Q24.21) CNV AMP PEAK 20(8Q24.21) WILD-TYPE 
                           192                            312 
[1] "Amp Peak 21(8q24.21)"
[1] 3
      AMP PEAK 21(8Q24.21) CNV AMP PEAK 21(8Q24.21) WILD-TYPE 
                           200                            304 
      AMP PEAK 21(8Q24.21) CNV AMP PEAK 21(8Q24.21) WILD-TYPE 
                           200                            304 
[1] "Amp Peak 22(9p24.2)"
[1] 3
      AMP PEAK 22(9P24.2) CNV AMP PEAK 22(9P24.2) WILD-TYPE 
                           59                           445 
      AMP PEAK 22(9P24.2) CNV AMP PEAK 22(9P24.2) WILD-TYPE 
                           59                           445 
[1] "Amp Peak 23(9q34.3)"
[1] 3
      AMP PEAK 23(9Q34.3) CNV AMP PEAK 23(9Q34.3) WILD-TYPE 
                           33                           471 
      AMP PEAK 23(9Q34.3) CNV AMP PEAK 23(9Q34.3) WILD-TYPE 
                           33                           471 
[1] "Amp Peak 24(10q22.2)"
[1] 3
      AMP PEAK 24(10Q22.2) CNV AMP PEAK 24(10Q22.2) WILD-TYPE 
                           133                            371 
      AMP PEAK 24(10Q22.2) CNV AMP PEAK 24(10Q22.2) WILD-TYPE 
                           133                            371 
[1] "Amp Peak 25(11p11.2)"
[1] 3
      AMP PEAK 25(11P11.2) CNV AMP PEAK 25(11P11.2) WILD-TYPE 
                            46                            458 
      AMP PEAK 25(11P11.2) CNV AMP PEAK 25(11P11.2) WILD-TYPE 
                            46                            458 
[1] "Amp Peak 26(11q13.2)"
[1] 3
      AMP PEAK 26(11Q13.2) CNV AMP PEAK 26(11Q13.2) WILD-TYPE 
                            70                            434 
      AMP PEAK 26(11Q13.2) CNV AMP PEAK 26(11Q13.2) WILD-TYPE 
                            70                            434 
[1] "Amp Peak 27(11q14.1)"
[1] 3
      AMP PEAK 27(11Q14.1) CNV AMP PEAK 27(11Q14.1) WILD-TYPE 
                            53                            451 
      AMP PEAK 27(11Q14.1) CNV AMP PEAK 27(11Q14.1) WILD-TYPE 
                            53                            451 
[1] "Amp Peak 28(12p12.1)"
[1] 3
      AMP PEAK 28(12P12.1) CNV AMP PEAK 28(12P12.1) WILD-TYPE 
                            82                            422 
      AMP PEAK 28(12P12.1) CNV AMP PEAK 28(12P12.1) WILD-TYPE 
                            82                            422 
[1] "Amp Peak 29(12q13.11)"
[1] 3
      AMP PEAK 29(12Q13.11) CNV AMP PEAK 29(12Q13.11) WILD-TYPE 
                             81                             423 
      AMP PEAK 29(12Q13.11) CNV AMP PEAK 29(12Q13.11) WILD-TYPE 
                             81                             423 
[1] "Amp Peak 30(12q13.2)"
[1] 3
      AMP PEAK 30(12Q13.2) CNV AMP PEAK 30(12Q13.2) WILD-TYPE 
                            89                            415 
      AMP PEAK 30(12Q13.2) CNV AMP PEAK 30(12Q13.2) WILD-TYPE 
                            89                            415 
[1] "Amp Peak 31(13q34)"
[1] 3
      AMP PEAK 31(13Q34) CNV AMP PEAK 31(13Q34) WILD-TYPE 
                          51                          453 
      AMP PEAK 31(13Q34) CNV AMP PEAK 31(13Q34) WILD-TYPE 
                          51                          453 
[1] "Amp Peak 32(14q24.3)"
[1] 3
      AMP PEAK 32(14Q24.3) CNV AMP PEAK 32(14Q24.3) WILD-TYPE 
                            58                            446 
      AMP PEAK 32(14Q24.3) CNV AMP PEAK 32(14Q24.3) WILD-TYPE 
                            58                            446 
[1] "Amp Peak 33(15q26.3)"
[1] 3
      AMP PEAK 33(15Q26.3) CNV AMP PEAK 33(15Q26.3) WILD-TYPE 
                            35                            469 
      AMP PEAK 33(15Q26.3) CNV AMP PEAK 33(15Q26.3) WILD-TYPE 
                            35                            469 
[1] "Amp Peak 34(16p11.2)"
[1] 3
      AMP PEAK 34(16P11.2) CNV AMP PEAK 34(16P11.2) WILD-TYPE 
                            57                            447 
      AMP PEAK 34(16P11.2) CNV AMP PEAK 34(16P11.2) WILD-TYPE 
                            57                            447 
[1] "Amp Peak 35(17q11.2)"
[1] 3
      AMP PEAK 35(17Q11.2) CNV AMP PEAK 35(17Q11.2) WILD-TYPE 
                            65                            439 
      AMP PEAK 35(17Q11.2) CNV AMP PEAK 35(17Q11.2) WILD-TYPE 
                            65                            439 
[1] "Amp Peak 36(17q12)"
[1] 3
      AMP PEAK 36(17Q12) CNV AMP PEAK 36(17Q12) WILD-TYPE 
                          66                          438 
      AMP PEAK 36(17Q12) CNV AMP PEAK 36(17Q12) WILD-TYPE 
                          66                          438 
[1] "Amp Peak 37(17q25.1)"
[1] 3
      AMP PEAK 37(17Q25.1) CNV AMP PEAK 37(17Q25.1) WILD-TYPE 
                            94                            410 
      AMP PEAK 37(17Q25.1) CNV AMP PEAK 37(17Q25.1) WILD-TYPE 
                            94                            410 
[1] "Amp Peak 38(18p11.31)"
[1] 3
      AMP PEAK 38(18P11.31) CNV AMP PEAK 38(18P11.31) WILD-TYPE 
                             83                             421 
      AMP PEAK 38(18P11.31) CNV AMP PEAK 38(18P11.31) WILD-TYPE 
                             83                             421 
[1] "Amp Peak 39(18q11.2)"
[1] 3
      AMP PEAK 39(18Q11.2) CNV AMP PEAK 39(18Q11.2) WILD-TYPE 
                            64                            440 
      AMP PEAK 39(18Q11.2) CNV AMP PEAK 39(18Q11.2) WILD-TYPE 
                            64                            440 
[1] "Amp Peak 40(19p13.2)"
[1] 3
      AMP PEAK 40(19P13.2) CNV AMP PEAK 40(19P13.2) WILD-TYPE 
                            86                            418 
      AMP PEAK 40(19P13.2) CNV AMP PEAK 40(19P13.2) WILD-TYPE 
                            86                            418 
[1] "Amp Peak 41(19p13.11)"
[1] 3
      AMP PEAK 41(19P13.11) CNV AMP PEAK 41(19P13.11) WILD-TYPE 
                             87                             417 
      AMP PEAK 41(19P13.11) CNV AMP PEAK 41(19P13.11) WILD-TYPE 
                             87                             417 
[1] "Amp Peak 42(19q12)"
[1] 3
      AMP PEAK 42(19Q12) CNV AMP PEAK 42(19Q12) WILD-TYPE 
                         107                          397 
      AMP PEAK 42(19Q12) CNV AMP PEAK 42(19Q12) WILD-TYPE 
                         107                          397 
[1] "Amp Peak 43(20p13)"
[1] 3
      AMP PEAK 43(20P13) CNV AMP PEAK 43(20P13) WILD-TYPE 
                         107                          397 
      AMP PEAK 43(20P13) CNV AMP PEAK 43(20P13) WILD-TYPE 
                         107                          397 
[1] "Amp Peak 44(20q11.21)"
[1] 3
      AMP PEAK 44(20Q11.21) CNV AMP PEAK 44(20Q11.21) WILD-TYPE 
                            133                             371 
      AMP PEAK 44(20Q11.21) CNV AMP PEAK 44(20Q11.21) WILD-TYPE 
                            133                             371 
[1] "Amp Peak 45(20q13.12)"
[1] 3
      AMP PEAK 45(20Q13.12) CNV AMP PEAK 45(20Q13.12) WILD-TYPE 
                            140                             364 
      AMP PEAK 45(20Q13.12) CNV AMP PEAK 45(20Q13.12) WILD-TYPE 
                            140                             364 
[1] "Amp Peak 46(20q13.33)"
[1] 3
      AMP PEAK 46(20Q13.33) CNV AMP PEAK 46(20Q13.33) WILD-TYPE 
                            137                             367 
      AMP PEAK 46(20Q13.33) CNV AMP PEAK 46(20Q13.33) WILD-TYPE 
                            137                             367 
[1] "Amp Peak 47(22q12.2)"
[1] 3
      AMP PEAK 47(22Q12.2) CNV AMP PEAK 47(22Q12.2) WILD-TYPE 
                            56                            448 
      AMP PEAK 47(22Q12.2) CNV AMP PEAK 47(22Q12.2) WILD-TYPE 
                            56                            448 
[1] "Amp Peak 48(Xp11.23)"
[1] 3
      AMP PEAK 48(XP11.23) CNV AMP PEAK 48(XP11.23) WILD-TYPE 
                            85                            419 
      AMP PEAK 48(XP11.23) CNV AMP PEAK 48(XP11.23) WILD-TYPE 
                            85                            419 
[1] "Amp Peak 49(Xq28)"
[1] 3
      AMP PEAK 49(XQ28) CNV AMP PEAK 49(XQ28) WILD-TYPE 
                         87                         417 
      AMP PEAK 49(XQ28) CNV AMP PEAK 49(XQ28) WILD-TYPE 
                         87                         417 
[1] "Del Peak  1(1p36.11)"
[1] 3
      DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE 
                            79                            425 
      DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE 
                            79                            425 
[1] "Del Peak  2(2p25.3)"
[1] 3
      DEL PEAK  2(2P25.3) CNV DEL PEAK  2(2P25.3) WILD-TYPE 
                           25                           479 
      DEL PEAK  2(2P25.3) CNV DEL PEAK  2(2P25.3) WILD-TYPE 
                           25                           479 
[1] "Del Peak  3(2q22.1)"
[1] 3
      DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE 
                           46                           458 
      DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE 
                           46                           458 
[1] "Del Peak  4(2q37.3)"
[1] 3
      DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE 
                           50                           454 
      DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE 
                           50                           454 
[1] "Del Peak  5(3p14.2)"
[1] 3
      DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE 
                           72                           432 
      DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE 
                           72                           432 
[1] "Del Peak  6(3q13.31)"
[1] 3
      DEL PEAK  6(3Q13.31) CNV DEL PEAK  6(3Q13.31) WILD-TYPE 
                            30                            474 
      DEL PEAK  6(3Q13.31) CNV DEL PEAK  6(3Q13.31) WILD-TYPE 
                            30                            474 
[1] "Del Peak  7(4p16.3)"
[1] 3
      DEL PEAK  7(4P16.3) CNV DEL PEAK  7(4P16.3) WILD-TYPE 
                           89                           415 
      DEL PEAK  7(4P16.3) CNV DEL PEAK  7(4P16.3) WILD-TYPE 
                           89                           415 
[1] "Del Peak  8(4p15.31)"
[1] 3
      DEL PEAK  8(4P15.31) CNV DEL PEAK  8(4P15.31) WILD-TYPE 
                            92                            412 
      DEL PEAK  8(4P15.31) CNV DEL PEAK  8(4P15.31) WILD-TYPE 
                            92                            412 
[1] "Del Peak  9(4q22.1)"
[1] 3
      DEL PEAK  9(4Q22.1) CNV DEL PEAK  9(4Q22.1) WILD-TYPE 
                          100                           404 
      DEL PEAK  9(4Q22.1) CNV DEL PEAK  9(4Q22.1) WILD-TYPE 
                          100                           404 
[1] "Del Peak 10(4q34.3)"
[1] 3
      DEL PEAK 10(4Q34.3) CNV DEL PEAK 10(4Q34.3) WILD-TYPE 
                          119                           385 
      DEL PEAK 10(4Q34.3) CNV DEL PEAK 10(4Q34.3) WILD-TYPE 
                          119                           385 
[1] "Del Peak 11(5q11.2)"
[1] 3
      DEL PEAK 11(5Q11.2) CNV DEL PEAK 11(5Q11.2) WILD-TYPE 
                          104                           400 
      DEL PEAK 11(5Q11.2) CNV DEL PEAK 11(5Q11.2) WILD-TYPE 
                          104                           400 
[1] "Del Peak 12(6q26)"
[1] 3
      DEL PEAK 12(6Q26) CNV DEL PEAK 12(6Q26) WILD-TYPE 
                         45                         459 
      DEL PEAK 12(6Q26) CNV DEL PEAK 12(6Q26) WILD-TYPE 
                         45                         459 
[1] "Del Peak 13(7p22.3)"
[1] 3
      DEL PEAK 13(7P22.3) CNV DEL PEAK 13(7P22.3) WILD-TYPE 
                           70                           434 
      DEL PEAK 13(7P22.3) CNV DEL PEAK 13(7P22.3) WILD-TYPE 
                           70                           434 
[1] "Del Peak 14(7q11.22)"
[1] 3
      DEL PEAK 14(7Q11.22) CNV DEL PEAK 14(7Q11.22) WILD-TYPE 
                            41                            463 
      DEL PEAK 14(7Q11.22) CNV DEL PEAK 14(7Q11.22) WILD-TYPE 
                            41                            463 
[1] "Del Peak 15(7q31.1)"
[1] 3
      DEL PEAK 15(7Q31.1) CNV DEL PEAK 15(7Q31.1) WILD-TYPE 
                           51                           453 
      DEL PEAK 15(7Q31.1) CNV DEL PEAK 15(7Q31.1) WILD-TYPE 
                           51                           453 
[1] "Del Peak 16(7q36.1)"
[1] 3
      DEL PEAK 16(7Q36.1) CNV DEL PEAK 16(7Q36.1) WILD-TYPE 
                           61                           443 
      DEL PEAK 16(7Q36.1) CNV DEL PEAK 16(7Q36.1) WILD-TYPE 
                           61                           443 
[1] "Del Peak 17(8p23.2)"
[1] 3
      DEL PEAK 17(8P23.2) CNV DEL PEAK 17(8P23.2) WILD-TYPE 
                          107                           397 
      DEL PEAK 17(8P23.2) CNV DEL PEAK 17(8P23.2) WILD-TYPE 
                          107                           397 
[1] "Del Peak 18(8p21.2)"
[1] 3
      DEL PEAK 18(8P21.2) CNV DEL PEAK 18(8P21.2) WILD-TYPE 
                          106                           398 
      DEL PEAK 18(8P21.2) CNV DEL PEAK 18(8P21.2) WILD-TYPE 
                          106                           398 
[1] "Del Peak 19(9p23)"
[1] 3
      DEL PEAK 19(9P23) CNV DEL PEAK 19(9P23) WILD-TYPE 
                         68                         436 
      DEL PEAK 19(9P23) CNV DEL PEAK 19(9P23) WILD-TYPE 
                         68                         436 
[1] "Del Peak 20(9q21.2)"
[1] 3
      DEL PEAK 20(9Q21.2) CNV DEL PEAK 20(9Q21.2) WILD-TYPE 
                          118                           386 
      DEL PEAK 20(9Q21.2) CNV DEL PEAK 20(9Q21.2) WILD-TYPE 
                          118                           386 
[1] "Del Peak 21(9q34.11)"
[1] 3
      DEL PEAK 21(9Q34.11) CNV DEL PEAK 21(9Q34.11) WILD-TYPE 
                           126                            378 
      DEL PEAK 21(9Q34.11) CNV DEL PEAK 21(9Q34.11) WILD-TYPE 
                           126                            378 
[1] "Del Peak 22(10q23.31)"
[1] 3
      DEL PEAK 22(10Q23.31) CNV DEL PEAK 22(10Q23.31) WILD-TYPE 
                             72                             432 
      DEL PEAK 22(10Q23.31) CNV DEL PEAK 22(10Q23.31) WILD-TYPE 
                             72                             432 
[1] "Del Peak 23(11p15.5)"
[1] 3
      DEL PEAK 23(11P15.5) CNV DEL PEAK 23(11P15.5) WILD-TYPE 
                            93                            411 
      DEL PEAK 23(11P15.5) CNV DEL PEAK 23(11P15.5) WILD-TYPE 
                            93                            411 
[1] "Del Peak 24(11q14.1)"
[1] 3
      DEL PEAK 24(11Q14.1) CNV DEL PEAK 24(11Q14.1) WILD-TYPE 
                            64                            440 
      DEL PEAK 24(11Q14.1) CNV DEL PEAK 24(11Q14.1) WILD-TYPE 
                            64                            440 
[1] "Del Peak 25(11q25)"
[1] 3
      DEL PEAK 25(11Q25) CNV DEL PEAK 25(11Q25) WILD-TYPE 
                          88                          416 
      DEL PEAK 25(11Q25) CNV DEL PEAK 25(11Q25) WILD-TYPE 
                          88                          416 
[1] "Del Peak 26(12q23.1)"
[1] 3
      DEL PEAK 26(12Q23.1) CNV DEL PEAK 26(12Q23.1) WILD-TYPE 
                            52                            452 
      DEL PEAK 26(12Q23.1) CNV DEL PEAK 26(12Q23.1) WILD-TYPE 
                            52                            452 
[1] "Del Peak 27(12q24.33)"
[1] 3
      DEL PEAK 27(12Q24.33) CNV DEL PEAK 27(12Q24.33) WILD-TYPE 
                             61                             443 
      DEL PEAK 27(12Q24.33) CNV DEL PEAK 27(12Q24.33) WILD-TYPE 
                             61                             443 
[1] "Del Peak 28(13q11)"
[1] 3
      DEL PEAK 28(13Q11) CNV DEL PEAK 28(13Q11) WILD-TYPE 
                          90                          414 
      DEL PEAK 28(13Q11) CNV DEL PEAK 28(13Q11) WILD-TYPE 
                          90                          414 
[1] "Del Peak 29(13q14.2)"
[1] 3
      DEL PEAK 29(13Q14.2) CNV DEL PEAK 29(13Q14.2) WILD-TYPE 
                            98                            406 
      DEL PEAK 29(13Q14.2) CNV DEL PEAK 29(13Q14.2) WILD-TYPE 
                            98                            406 
[1] "Del Peak 30(14q13.1)"
[1] 3
      DEL PEAK 30(14Q13.1) CNV DEL PEAK 30(14Q13.1) WILD-TYPE 
                            65                            439 
      DEL PEAK 30(14Q13.1) CNV DEL PEAK 30(14Q13.1) WILD-TYPE 
                            65                            439 
[1] "Del Peak 31(15q15.1)"
[1] 3
      DEL PEAK 31(15Q15.1) CNV DEL PEAK 31(15Q15.1) WILD-TYPE 
                           129                            375 
      DEL PEAK 31(15Q15.1) CNV DEL PEAK 31(15Q15.1) WILD-TYPE 
                           129                            375 
[1] "Del Peak 32(15q23)"
[1] 3
      DEL PEAK 32(15Q23) CNV DEL PEAK 32(15Q23) WILD-TYPE 
                         106                          398 
      DEL PEAK 32(15Q23) CNV DEL PEAK 32(15Q23) WILD-TYPE 
                         106                          398 
[1] "Del Peak 33(16p13.3)"
[1] 3
      DEL PEAK 33(16P13.3) CNV DEL PEAK 33(16P13.3) WILD-TYPE 
                            83                            421 
      DEL PEAK 33(16P13.3) CNV DEL PEAK 33(16P13.3) WILD-TYPE 
                            83                            421 
[1] "Del Peak 34(16q21)"
[1] 3
      DEL PEAK 34(16Q21) CNV DEL PEAK 34(16Q21) WILD-TYPE 
                         143                          361 
      DEL PEAK 34(16Q21) CNV DEL PEAK 34(16Q21) WILD-TYPE 
                         143                          361 
[1] "Del Peak 35(16q23.1)"
[1] 3
      DEL PEAK 35(16Q23.1) CNV DEL PEAK 35(16Q23.1) WILD-TYPE 
                           154                            350 
      DEL PEAK 35(16Q23.1) CNV DEL PEAK 35(16Q23.1) WILD-TYPE 
                           154                            350 
[1] "Del Peak 36(17p13.3)"
[1] 3
      DEL PEAK 36(17P13.3) CNV DEL PEAK 36(17P13.3) WILD-TYPE 
                           113                            391 
      DEL PEAK 36(17P13.3) CNV DEL PEAK 36(17P13.3) WILD-TYPE 
                           113                            391 
[1] "Del Peak 37(17p11.2)"
[1] 3
      DEL PEAK 37(17P11.2) CNV DEL PEAK 37(17P11.2) WILD-TYPE 
                           121                            383 
      DEL PEAK 37(17P11.2) CNV DEL PEAK 37(17P11.2) WILD-TYPE 
                           121                            383 
[1] "Del Peak 38(17p11.2)"
[1] 3
      DEL PEAK 38(17P11.2) CNV DEL PEAK 38(17P11.2) WILD-TYPE 
                           111                            393 
      DEL PEAK 38(17P11.2) CNV DEL PEAK 38(17P11.2) WILD-TYPE 
                           111                            393 
[1] "Del Peak 39(17q11.2)"
[1] 3
      DEL PEAK 39(17Q11.2) CNV DEL PEAK 39(17Q11.2) WILD-TYPE 
                            98                            406 
      DEL PEAK 39(17Q11.2) CNV DEL PEAK 39(17Q11.2) WILD-TYPE 
                            98                            406 
[1] "Del Peak 40(17q21.2)"
[1] 3
      DEL PEAK 40(17Q21.2) CNV DEL PEAK 40(17Q21.2) WILD-TYPE 
                           104                            400 
      DEL PEAK 40(17Q21.2) CNV DEL PEAK 40(17Q21.2) WILD-TYPE 
                           104                            400 
[1] "Del Peak 41(18q23)"
[1] 3
      DEL PEAK 41(18Q23) CNV DEL PEAK 41(18Q23) WILD-TYPE 
                          92                          412 
      DEL PEAK 41(18Q23) CNV DEL PEAK 41(18Q23) WILD-TYPE 
                          92                          412 
[1] "Del Peak 42(19p13.3)"
[1] 3
      DEL PEAK 42(19P13.3) CNV DEL PEAK 42(19P13.3) WILD-TYPE 
                           145                            359 
      DEL PEAK 42(19P13.3) CNV DEL PEAK 42(19P13.3) WILD-TYPE 
                           145                            359 
[1] "Del Peak 43(19p12)"
[1] 3
      DEL PEAK 43(19P12) CNV DEL PEAK 43(19P12) WILD-TYPE 
                          51                          453 
      DEL PEAK 43(19P12) CNV DEL PEAK 43(19P12) WILD-TYPE 
                          51                          453 
[1] "Del Peak 44(19q13.43)"
[1] 3
      DEL PEAK 44(19Q13.43) CNV DEL PEAK 44(19Q13.43) WILD-TYPE 
                             60                             444 
      DEL PEAK 44(19Q13.43) CNV DEL PEAK 44(19Q13.43) WILD-TYPE 
                             60                             444 
[1] "Del Peak 45(20p12.1)"
[1] 3
      DEL PEAK 45(20P12.1) CNV DEL PEAK 45(20P12.1) WILD-TYPE 
                            32                            472 
      DEL PEAK 45(20P12.1) CNV DEL PEAK 45(20P12.1) WILD-TYPE 
                            32                            472 
[1] "Del Peak 46(22q12.1)"
[1] 3
      DEL PEAK 46(22Q12.1) CNV DEL PEAK 46(22Q12.1) WILD-TYPE 
                            89                            415 
      DEL PEAK 46(22Q12.1) CNV DEL PEAK 46(22Q12.1) WILD-TYPE 
                            89                            415 
[1] "Del Peak 47(22q13.31)"
[1] 3
      DEL PEAK 47(22Q13.31) CNV DEL PEAK 47(22Q13.31) WILD-TYPE 
                            126                             378 
      DEL PEAK 47(22Q13.31) CNV DEL PEAK 47(22Q13.31) WILD-TYPE 
                            126                             378 
[1] "Del Peak 48(22q13.32)"
[1] 3
      DEL PEAK 48(22Q13.32) CNV DEL PEAK 48(22Q13.32) WILD-TYPE 
                            132                             372 
      DEL PEAK 48(22Q13.32) CNV DEL PEAK 48(22Q13.32) WILD-TYPE 
                            132                             372 
[1] "Del Peak 49(Xp21.1)"
[1] 3
      DEL PEAK 49(XP21.1) CNV DEL PEAK 49(XP21.1) WILD-TYPE 
                           85                           419 
      DEL PEAK 49(XP21.1) CNV DEL PEAK 49(XP21.1) WILD-TYPE 
                           85                           419 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 504 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 504 columns, 0 survival variables, and 12 non-survival variables.
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=6, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=6, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=2, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1p35.2)
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P35.2) CNV AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                       1                            13
  CLUS_2                       4                            13
  CLUS_3                       0                            12
  CLUS_4                       0                            10
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P35.2) CNV AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                       1                            18
  CLUS_2                       0                            19
  CLUS_3                       4                            11
D1V3, multiclass
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P35.2) CNV AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                      31                           115
  CLUS_2                       6                            83
  CLUS_3                       7                           148
D1V5, multiclass
D1V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P35.2) CNV          8    7
  AMP PEAK  1(1P35.2) WILD-TYPE   65  114
        clus
vv       AMP PEAK  1(1P35.2) CNV AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                       7                           114
  CLUS_2                       8                            65
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P35.2) CNV AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                      13                            36
  CLUS_2                       3                            33
  CLUS_3                       6                            27
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P35.2) CNV AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                      13                            33
  CLUS_2                       4                            32
  CLUS_3                       5                            31
D1V9, multiclass
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P35.2) CNV AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                       3                            24
  CLUS_2                       7                           215
  CLUS_3                      42                           204
D1V11, multiclass
        clus
vv       AMP PEAK  1(1P35.2) CNV AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                      31                           138
  CLUS_2                       7                           108
  CLUS_3                       5                            83
D1V12, multiclass
        clus
vv       AMP PEAK  1(1P35.2) CNV AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                       8                            91
  CLUS_2                       8                           130
  CLUS_3                      25                            85
  CLUS_4                       2                            23

Clustering(2) Variable = Amp Peak  2(1p34.2)
D2V1, multiclass
        clus
vv       AMP PEAK  2(1P34.2) CNV AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                       1                            13
  CLUS_2                       6                            11
  CLUS_3                       0                            12
  CLUS_4                       0                            10
D2V2, multiclass
        clus
vv       AMP PEAK  2(1P34.2) CNV AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                       1                            18
  CLUS_2                       0                            19
  CLUS_3                       6                             9
D2V3, multiclass
D2V4, multiclass
        clus
vv       AMP PEAK  2(1P34.2) CNV AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                      38                           108
  CLUS_2                      13                            76
  CLUS_3                       6                           149
D2V5, multiclass
D2V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1P34.2) CNV          6    7
  AMP PEAK  2(1P34.2) WILD-TYPE   67  114
        clus
vv       AMP PEAK  2(1P34.2) CNV AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                       7                           114
  CLUS_2                       6                            67
D2V7, multiclass
        clus
vv       AMP PEAK  2(1P34.2) CNV AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                      21                            28
  CLUS_2                       2                            34
  CLUS_3                       4                            29
D2V8, multiclass
        clus
vv       AMP PEAK  2(1P34.2) CNV AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                      18                            28
  CLUS_2                       5                            31
  CLUS_3                       4                            32
D2V9, multiclass
D2V10, multiclass
        clus
vv       AMP PEAK  2(1P34.2) CNV AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                       3                            24
  CLUS_2                       6                           216
  CLUS_3                      56                           190
D2V11, multiclass
        clus
vv       AMP PEAK  2(1P34.2) CNV AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                      41                           128
  CLUS_2                       6                           109
  CLUS_3                       8                            80
D2V12, multiclass
        clus
vv       AMP PEAK  2(1P34.2) CNV AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                      13                            86
  CLUS_2                       7                           131
  CLUS_3                      34                            76
  CLUS_4                       1                            24

Clustering(3) Variable = Amp Peak  3(1p22.3)
D3V1, multiclass
        clus
vv       AMP PEAK  3(1P22.3) CNV AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                       5                             9
  CLUS_2                       5                            12
  CLUS_3                       0                            12
  CLUS_4                       0                            10
D3V2, multiclass
        clus
vv       AMP PEAK  3(1P22.3) CNV AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                       5                            14
  CLUS_2                       0                            19
  CLUS_3                       5                            10
D3V3, multiclass
D3V4, multiclass
        clus
vv       AMP PEAK  3(1P22.3) CNV AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                      33                           113
  CLUS_2                       7                            82
  CLUS_3                      24                           131
D3V5, multiclass
D3V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1P22.3) CNV          7   19
  AMP PEAK  3(1P22.3) WILD-TYPE   66  102
        clus
vv       AMP PEAK  3(1P22.3) CNV AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                      19                           102
  CLUS_2                       7                            66
D3V7, multiclass
        clus
vv       AMP PEAK  3(1P22.3) CNV AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                      16                            33
  CLUS_2                       5                            31
  CLUS_3                       3                            30
D3V8, multiclass
        clus
vv       AMP PEAK  3(1P22.3) CNV AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                      12                            34
  CLUS_2                       8                            28
  CLUS_3                       4                            32
D3V9, multiclass
D3V10, multiclass
        clus
vv       AMP PEAK  3(1P22.3) CNV AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                       1                            26
  CLUS_2                      23                           199
  CLUS_3                      59                           187
D3V11, multiclass
        clus
vv       AMP PEAK  3(1P22.3) CNV AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                      42                           127
  CLUS_2                      13                           102
  CLUS_3                       9                            79
D3V12, multiclass
        clus
vv       AMP PEAK  3(1P22.3) CNV AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                      12                            87
  CLUS_2                      12                           126
  CLUS_3                      37                            73
  CLUS_4                       3                            22

Clustering(4) Variable = Amp Peak  4(1q21.3)
D4V1, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) CNV AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                      11                             3
  CLUS_2                      11                             6
  CLUS_3                       5                             7
  CLUS_4                       2                             8
D4V2, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) CNV AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                      13                             6
  CLUS_2                       6                            13
  CLUS_3                      10                             5
D4V3, multiclass
D4V4, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) CNV AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                      79                            67
  CLUS_2                      34                            55
  CLUS_3                      57                            98
D4V5, multiclass
D4V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(1Q21.3) CNV         25   55
  AMP PEAK  4(1Q21.3) WILD-TYPE   48   66
        clus
vv       AMP PEAK  4(1Q21.3) CNV AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                      55                            66
  CLUS_2                      25                            48
D4V7, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) CNV AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                      38                            11
  CLUS_2                      12                            24
  CLUS_3                      14                            19
D4V8, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) CNV AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                      34                            12
  CLUS_2                      17                            19
  CLUS_3                      13                            23
D4V9, multiclass
D4V10, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) CNV AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                       9                            18
  CLUS_2                      79                           143
  CLUS_3                     135                           111
D4V11, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) CNV AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                      86                            83
  CLUS_2                      44                            71
  CLUS_3                      40                            48
D4V12, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) CNV AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                      45                            54
  CLUS_2                      48                            90
  CLUS_3                      70                            40
  CLUS_4                       7                            18

Clustering(5) Variable = Amp Peak  5(1q22)
D5V1, multiclass
        clus
vv       AMP PEAK  5(1Q22) CNV AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                    11                           3
  CLUS_2                    11                           6
  CLUS_3                     5                           7
  CLUS_4                     2                           8
D5V2, multiclass
        clus
vv       AMP PEAK  5(1Q22) CNV AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                    13                           6
  CLUS_2                     6                          13
  CLUS_3                    10                           5
D5V3, multiclass
D5V4, multiclass
        clus
vv       AMP PEAK  5(1Q22) CNV AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                    87                          59
  CLUS_2                    35                          54
  CLUS_3                    57                          98
D5V5, multiclass
D5V6, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  5(1Q22) CNV         27   58
  AMP PEAK  5(1Q22) WILD-TYPE   46   63
        clus
vv       AMP PEAK  5(1Q22) CNV AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                    58                          63
  CLUS_2                    27                          46
D5V7, multiclass
        clus
vv       AMP PEAK  5(1Q22) CNV AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                    38                          11
  CLUS_2                    13                          23
  CLUS_3                    16                          17
D5V8, multiclass
        clus
vv       AMP PEAK  5(1Q22) CNV AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                    34                          12
  CLUS_2                    18                          18
  CLUS_3                    15                          21
D5V9, multiclass
D5V10, multiclass
        clus
vv       AMP PEAK  5(1Q22) CNV AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                     9                          18
  CLUS_2                    83                         139
  CLUS_3                   143                         103
D5V11, multiclass
        clus
vv       AMP PEAK  5(1Q22) CNV AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                    90                          79
  CLUS_2                    48                          67
  CLUS_3                    42                          46
D5V12, multiclass
        clus
vv       AMP PEAK  5(1Q22) CNV AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                    49                          50
  CLUS_2                    52                          86
  CLUS_3                    72                          38
  CLUS_4                     7                          18

Clustering(6) Variable = Amp Peak  6(1q42.3)
D6V1, multiclass
        clus
vv       AMP PEAK  6(1Q42.3) CNV AMP PEAK  6(1Q42.3) WILD-TYPE
  CLUS_1                      10                             4
  CLUS_2                      10                             7
  CLUS_3                       4                             8
  CLUS_4                       2                             8
D6V2, multiclass
        clus
vv       AMP PEAK  6(1Q42.3) CNV AMP PEAK  6(1Q42.3) WILD-TYPE
  CLUS_1                      11                             8
  CLUS_2                       6                            13
  CLUS_3                       9                             6
D6V3, multiclass
D6V4, multiclass
        clus
vv       AMP PEAK  6(1Q42.3) CNV AMP PEAK  6(1Q42.3) WILD-TYPE
  CLUS_1                      67                            79
  CLUS_2                      28                            61
  CLUS_3                      57                            98
D6V5, multiclass
D6V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(1Q42.3) CNV         23   55
  AMP PEAK  6(1Q42.3) WILD-TYPE   50   66
        clus
vv       AMP PEAK  6(1Q42.3) CNV AMP PEAK  6(1Q42.3) WILD-TYPE
  CLUS_1                      55                            66
  CLUS_2                      23                            50
D6V7, multiclass
        clus
vv       AMP PEAK  6(1Q42.3) CNV AMP PEAK  6(1Q42.3) WILD-TYPE
  CLUS_1                      26                            23
  CLUS_2                      10                            26
  CLUS_3                      15                            18
D6V8, multiclass
        clus
vv       AMP PEAK  6(1Q42.3) CNV AMP PEAK  6(1Q42.3) WILD-TYPE
  CLUS_1                      24                            22
  CLUS_2                      14                            22
  CLUS_3                      13                            23
D6V9, multiclass
D6V10, multiclass
        clus
vv       AMP PEAK  6(1Q42.3) CNV AMP PEAK  6(1Q42.3) WILD-TYPE
  CLUS_1                       9                            18
  CLUS_2                      83                           139
  CLUS_3                     115                           131
D6V11, multiclass
        clus
vv       AMP PEAK  6(1Q42.3) CNV AMP PEAK  6(1Q42.3) WILD-TYPE
  CLUS_1                      67                           102
  CLUS_2                      45                            70
  CLUS_3                      38                            50
D6V12, multiclass
        clus
vv       AMP PEAK  6(1Q42.3) CNV AMP PEAK  6(1Q42.3) WILD-TYPE
  CLUS_1                      43                            56
  CLUS_2                      48                            90
  CLUS_3                      52                            58
  CLUS_4                       7                            18

Clustering(7) Variable = Amp Peak  7(2p24.3)
D7V1, multiclass
        clus
vv       AMP PEAK  7(2P24.3) CNV AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                       1                            13
  CLUS_2                       4                            13
  CLUS_3                       2                            10
  CLUS_4                       1                             9
D7V2, multiclass
        clus
vv       AMP PEAK  7(2P24.3) CNV AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                       2                            17
  CLUS_2                       2                            17
  CLUS_3                       4                            11
D7V3, multiclass
D7V4, multiclass
        clus
vv       AMP PEAK  7(2P24.3) CNV AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                      55                            91
  CLUS_2                      13                            76
  CLUS_3                      20                           135
D7V5, multiclass
D7V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  7(2P24.3) CNV         13   19
  AMP PEAK  7(2P24.3) WILD-TYPE   60  102
        clus
vv       AMP PEAK  7(2P24.3) CNV AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                      19                           102
  CLUS_2                      13                            60
D7V7, multiclass
        clus
vv       AMP PEAK  7(2P24.3) CNV AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                      26                            23
  CLUS_2                       6                            30
  CLUS_3                       7                            26
D7V8, multiclass
        clus
vv       AMP PEAK  7(2P24.3) CNV AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                      22                            24
  CLUS_2                      11                            25
  CLUS_3                       6                            30
D7V9, multiclass
D7V10, multiclass
        clus
vv       AMP PEAK  7(2P24.3) CNV AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                       5                            22
  CLUS_2                      29                           193
  CLUS_3                      77                           169
D7V11, multiclass
        clus
vv       AMP PEAK  7(2P24.3) CNV AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                      51                           118
  CLUS_2                      13                           102
  CLUS_3                      21                            67
D7V12, multiclass
        clus
vv       AMP PEAK  7(2P24.3) CNV AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                      24                            75
  CLUS_2                      16                           122
  CLUS_3                      41                            69
  CLUS_4                       4                            21

Clustering(8) Variable = Amp Peak  8(2q13)
D8V1, multiclass
        clus
vv       AMP PEAK  8(2Q13) CNV AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                     2                          12
  CLUS_2                     6                          11
  CLUS_3                     2                          10
  CLUS_4                     0                          10
D8V2, multiclass
        clus
vv       AMP PEAK  8(2Q13) CNV AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                     3                          16
  CLUS_2                     1                          18
  CLUS_3                     6                           9
D8V3, multiclass
D8V4, multiclass
        clus
vv       AMP PEAK  8(2Q13) CNV AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                    61                          85
  CLUS_2                    16                          73
  CLUS_3                    11                         144
D8V5, multiclass
D8V6, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  8(2Q13) CNV         15   15
  AMP PEAK  8(2Q13) WILD-TYPE   58  106
        clus
vv       AMP PEAK  8(2Q13) CNV AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                    15                         106
  CLUS_2                    15                          58
D8V7, multiclass
        clus
vv       AMP PEAK  8(2Q13) CNV AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                    26                          23
  CLUS_2                     7                          29
  CLUS_3                     5                          28
D8V8, multiclass
        clus
vv       AMP PEAK  8(2Q13) CNV AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                    24                          22
  CLUS_2                    10                          26
  CLUS_3                     4                          32
D8V9, multiclass
D8V10, multiclass
        clus
vv       AMP PEAK  8(2Q13) CNV AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                     2                          25
  CLUS_2                    18                         204
  CLUS_3                    89                         157
D8V11, multiclass
        clus
vv       AMP PEAK  8(2Q13) CNV AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                    56                         113
  CLUS_2                     7                         108
  CLUS_3                    23                          65
D8V12, multiclass
        clus
vv       AMP PEAK  8(2Q13) CNV AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                    31                          68
  CLUS_2                     9                         129
  CLUS_3                    44                          66
  CLUS_4                     2                          23

Clustering(9) Variable = Amp Peak  9(3p25.1)
D9V1, multiclass
        clus
vv       AMP PEAK  9(3P25.1) CNV AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                       1                            13
  CLUS_2                       5                            12
  CLUS_3                       2                            10
  CLUS_4                       0                            10
D9V2, multiclass
        clus
vv       AMP PEAK  9(3P25.1) CNV AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                       3                            16
  CLUS_2                       1                            18
  CLUS_3                       4                            11
D9V3, multiclass
D9V4, multiclass
        clus
vv       AMP PEAK  9(3P25.1) CNV AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                      36                           110
  CLUS_2                      14                            75
  CLUS_3                       7                           148
D9V5, multiclass
D9V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(3P25.1) CNV          8    9
  AMP PEAK  9(3P25.1) WILD-TYPE   65  112
        clus
vv       AMP PEAK  9(3P25.1) CNV AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                       9                           112
  CLUS_2                       8                            65
D9V7, multiclass
        clus
vv       AMP PEAK  9(3P25.1) CNV AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                      17                            32
  CLUS_2                       2                            34
  CLUS_3                       4                            29
D9V8, multiclass
        clus
vv       AMP PEAK  9(3P25.1) CNV AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                      16                            30
  CLUS_2                       4                            32
  CLUS_3                       3                            33
D9V9, multiclass
D9V10, multiclass
        clus
vv       AMP PEAK  9(3P25.1) CNV AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                       3                            24
  CLUS_2                      15                           207
  CLUS_3                      51                           195
D9V11, multiclass
        clus
vv       AMP PEAK  9(3P25.1) CNV AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                      36                           133
  CLUS_2                       8                           107
  CLUS_3                      13                            75
D9V12, multiclass
        clus
vv       AMP PEAK  9(3P25.1) CNV AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                      16                            83
  CLUS_2                       8                           130
  CLUS_3                      29                            81
  CLUS_4                       4                            21

Clustering(10) Variable = Amp Peak 10(3p14.1)
D10V1, multiclass
        clus
vv       AMP PEAK 10(3P14.1) CNV AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                       0                            14
  CLUS_2                       2                            15
  CLUS_3                       1                            11
  CLUS_4                       0                            10
D10V2, multiclass
        clus
vv       AMP PEAK 10(3P14.1) CNV AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                       1                            18
  CLUS_2                       1                            18
  CLUS_3                       1                            14
D10V3, multiclass
D10V4, multiclass
        clus
vv       AMP PEAK 10(3P14.1) CNV AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                      27                           119
  CLUS_2                      11                            78
  CLUS_3                       9                           146
D10V5, multiclass
D10V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(3P14.1) CNV          6    6
  AMP PEAK 10(3P14.1) WILD-TYPE   67  115
        clus
vv       AMP PEAK 10(3P14.1) CNV AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                       6                           115
  CLUS_2                       6                            67
D10V7, multiclass
        clus
vv       AMP PEAK 10(3P14.1) CNV AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                      10                            39
  CLUS_2                       4                            32
  CLUS_3                       6                            27
D10V8, multiclass
        clus
vv       AMP PEAK 10(3P14.1) CNV AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                      10                            36
  CLUS_2                       6                            30
  CLUS_3                       4                            32
D10V9, multiclass
D10V10, multiclass
        clus
vv       AMP PEAK 10(3P14.1) CNV AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                       4                            23
  CLUS_2                      13                           209
  CLUS_3                      38                           208
D10V11, multiclass
        clus
vv       AMP PEAK 10(3P14.1) CNV AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                      26                           143
  CLUS_2                       8                           107
  CLUS_3                      13                            75
D10V12, multiclass
        clus
vv       AMP PEAK 10(3P14.1) CNV AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                      15                            84
  CLUS_2                       9                           129
  CLUS_3                      19                            91
  CLUS_4                       4                            21

Clustering(11) Variable = Amp Peak 11(3q26.2)
D11V1, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) CNV AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                       1                            13
  CLUS_2                      11                             6
  CLUS_3                       1                            11
  CLUS_4                       0                            10
D11V2, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) CNV AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                       2                            17
  CLUS_2                       1                            18
  CLUS_3                      10                             5
D11V3, multiclass
D11V4, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) CNV AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                      88                            58
  CLUS_2                      26                            63
  CLUS_3                      21                           134
D11V5, multiclass
D11V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 11(3Q26.2) CNV         21   17
  AMP PEAK 11(3Q26.2) WILD-TYPE   52  104
        clus
vv       AMP PEAK 11(3Q26.2) CNV AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                      17                           104
  CLUS_2                      21                            52
D11V7, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) CNV AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                      33                            16
  CLUS_2                       8                            28
  CLUS_3                      14                            19
D11V8, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) CNV AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                      32                            14
  CLUS_2                      12                            24
  CLUS_3                      11                            25
D11V9, multiclass
D11V10, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) CNV AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                       7                            20
  CLUS_2                      30                           192
  CLUS_3                     119                           127
D11V11, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) CNV AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                      83                            86
  CLUS_2                      21                            94
  CLUS_3                      28                            60
D11V12, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) CNV AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                      39                            60
  CLUS_2                      24                           114
  CLUS_3                      63                            47
  CLUS_4                       6                            19

Clustering(12) Variable = Amp Peak 12(3q26.2)
D12V1, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) CNV AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                       1                            13
  CLUS_2                      10                             7
  CLUS_3                       1                            11
  CLUS_4                       0                            10
D12V2, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) CNV AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                       2                            17
  CLUS_2                       1                            18
  CLUS_3                       9                             6
D12V3, multiclass
D12V4, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) CNV AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                      86                            60
  CLUS_2                      22                            67
  CLUS_3                      18                           137
D12V5, multiclass
D12V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 12(3Q26.2) CNV         20   17
  AMP PEAK 12(3Q26.2) WILD-TYPE   53  104
        clus
vv       AMP PEAK 12(3Q26.2) CNV AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                      17                           104
  CLUS_2                      20                            53
D12V7, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) CNV AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                      32                            17
  CLUS_2                       7                            29
  CLUS_3                      10                            23
D12V8, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) CNV AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                      30                            16
  CLUS_2                      11                            25
  CLUS_3                       8                            28
D12V9, multiclass
D12V10, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) CNV AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                       8                            19
  CLUS_2                      23                           199
  CLUS_3                     114                           132
D12V11, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) CNV AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                      79                            90
  CLUS_2                      17                            98
  CLUS_3                      26                            62
D12V12, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) CNV AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                      38                            61
  CLUS_2                      19                           119
  CLUS_3                      61                            49
  CLUS_4                       4                            21

Clustering(13) Variable = Amp Peak 13(4p16.3)
D13V1, multiclass
        clus
vv       AMP PEAK 13(4P16.3) CNV AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                       1                            13
  CLUS_2                       5                            12
  CLUS_3                       0                            12
  CLUS_4                       0                            10
D13V2, multiclass
        clus
vv       AMP PEAK 13(4P16.3) CNV AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                       1                            18
  CLUS_2                       0                            19
  CLUS_3                       5                            10
D13V3, multiclass
D13V4, multiclass
        clus
vv       AMP PEAK 13(4P16.3) CNV AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                      22                           124
  CLUS_2                      10                            79
  CLUS_3                       5                           150
D13V5, multiclass
D13V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 13(4P16.3) CNV          9    2
  AMP PEAK 13(4P16.3) WILD-TYPE   64  119
        clus
vv       AMP PEAK 13(4P16.3) CNV AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                       2                           119
  CLUS_2                       9                            64
D13V7, multiclass
        clus
vv       AMP PEAK 13(4P16.3) CNV AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                      11                            38
  CLUS_2                       1                            35
  CLUS_3                       1                            32
D13V8, multiclass
        clus
vv       AMP PEAK 13(4P16.3) CNV AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                      10                            36
  CLUS_2                       1                            35
  CLUS_3                       2                            34
D13V9, multiclass
D13V10, multiclass
        clus
vv       AMP PEAK 13(4P16.3) CNV AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                       3                            24
  CLUS_2                       5                           217
  CLUS_3                      36                           210
D13V11, multiclass
        clus
vv       AMP PEAK 13(4P16.3) CNV AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                      25                           144
  CLUS_2                       5                           110
  CLUS_3                       6                            82
D13V12, multiclass
        clus
vv       AMP PEAK 13(4P16.3) CNV AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                      12                            87
  CLUS_2                       5                           133
  CLUS_3                      18                            92
  CLUS_4                       1                            24

Clustering(14) Variable = Amp Peak 14(5p15.33)
D14V1, multiclass
        clus
vv       AMP PEAK 14(5P15.33) CNV AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                        2                             12
  CLUS_2                        5                             12
  CLUS_3                        1                             11
  CLUS_4                        0                             10
D14V2, multiclass
        clus
vv       AMP PEAK 14(5P15.33) CNV AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                        3                             16
  CLUS_2                        0                             19
  CLUS_3                        5                             10
D14V3, multiclass
D14V4, multiclass
        clus
vv       AMP PEAK 14(5P15.33) CNV AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                       49                             97
  CLUS_2                       13                             76
  CLUS_3                        4                            151
D14V5, multiclass
D14V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(5P15.33) CNV          8   10
  AMP PEAK 14(5P15.33) WILD-TYPE   65  111
        clus
vv       AMP PEAK 14(5P15.33) CNV AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                       10                            111
  CLUS_2                        8                             65
D14V7, multiclass
        clus
vv       AMP PEAK 14(5P15.33) CNV AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                       22                             27
  CLUS_2                        2                             34
  CLUS_3                        3                             30
D14V8, multiclass
        clus
vv       AMP PEAK 14(5P15.33) CNV AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                       21                             25
  CLUS_2                        4                             32
  CLUS_3                        2                             34
D14V9, multiclass
D14V10, multiclass
        clus
vv       AMP PEAK 14(5P15.33) CNV AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                        3                             24
  CLUS_2                       10                            212
  CLUS_3                       65                            181
D14V11, multiclass
        clus
vv       AMP PEAK 14(5P15.33) CNV AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                       47                            122
  CLUS_2                        5                            110
  CLUS_3                       13                             75
D14V12, multiclass
        clus
vv       AMP PEAK 14(5P15.33) CNV AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                       20                             79
  CLUS_2                        5                            133
  CLUS_3                       35                             75
  CLUS_4                        5                             20

Clustering(15) Variable = Amp Peak 15(5q35.3)
D15V1, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) CNV AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                       0                            14
  CLUS_2                       3                            14
  CLUS_3                       0                            12
  CLUS_4                       0                            10
D15V2, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) CNV AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                       0                            19
  CLUS_2                       0                            19
  CLUS_3                       3                            12
D15V3, multiclass
D15V4, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) CNV AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                      25                           121
  CLUS_2                      10                            79
  CLUS_3                       6                           149
D15V5, multiclass
D15V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 15(5Q35.3) CNV          4    5
  AMP PEAK 15(5Q35.3) WILD-TYPE   69  116
        clus
vv       AMP PEAK 15(5Q35.3) CNV AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                       5                           116
  CLUS_2                       4                            69
D15V7, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) CNV AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                      13                            36
  CLUS_2                       1                            35
  CLUS_3                       4                            29
D15V8, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) CNV AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                      13                            33
  CLUS_2                       2                            34
  CLUS_3                       3                            33
D15V9, multiclass
D15V10, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) CNV AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                       0                            27
  CLUS_2                      10                           212
  CLUS_3                      37                           209
D15V11, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) CNV AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                      24                           145
  CLUS_2                       5                           110
  CLUS_3                      10                            78
D15V12, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) CNV AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                      13                            86
  CLUS_2                       5                           133
  CLUS_3                      21                            89
  CLUS_4                       0                            25

Clustering(16) Variable = Amp Peak 16(6p24.2)
D16V1, multiclass
        clus
vv       AMP PEAK 16(6P24.2) CNV AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                       1                            13
  CLUS_2                       9                             8
  CLUS_3                       2                            10
  CLUS_4                       0                            10
D16V2, multiclass
        clus
vv       AMP PEAK 16(6P24.2) CNV AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                       1                            18
  CLUS_2                       2                            17
  CLUS_3                       9                             6
D16V3, multiclass
D16V4, multiclass
        clus
vv       AMP PEAK 16(6P24.2) CNV AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                      57                            89
  CLUS_2                      17                            72
  CLUS_3                      13                           142
D16V5, multiclass
D16V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 16(6P24.2) CNV         12    9
  AMP PEAK 16(6P24.2) WILD-TYPE   61  112
        clus
vv       AMP PEAK 16(6P24.2) CNV AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                       9                           112
  CLUS_2                      12                            61
D16V7, multiclass
        clus
vv       AMP PEAK 16(6P24.2) CNV AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                      27                            22
  CLUS_2                       3                            33
  CLUS_3                       8                            25
D16V8, multiclass
        clus
vv       AMP PEAK 16(6P24.2) CNV AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                      24                            22
  CLUS_2                       6                            30
  CLUS_3                       8                            28
D16V9, multiclass
D16V10, multiclass
        clus
vv       AMP PEAK 16(6P24.2) CNV AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                       5                            22
  CLUS_2                      16                           206
  CLUS_3                      79                           167
D16V11, multiclass
        clus
vv       AMP PEAK 16(6P24.2) CNV AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                      54                           115
  CLUS_2                      12                           103
  CLUS_3                      20                            68
D16V12, multiclass
        clus
vv       AMP PEAK 16(6P24.2) CNV AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                      28                            71
  CLUS_2                      13                           125
  CLUS_3                      42                            68
  CLUS_4                       3                            22

Clustering(17) Variable = Amp Peak 17(6q25.1)
D17V1, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) CNV AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                       0                            14
  CLUS_2                       2                            15
  CLUS_3                       2                            10
  CLUS_4                       0                            10
D17V2, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) CNV AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                       0                            19
  CLUS_2                       2                            17
  CLUS_3                       2                            13
D17V3, multiclass
D17V4, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) CNV AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                      44                           102
  CLUS_2                      11                            78
  CLUS_3                      15                           140
D17V5, multiclass
D17V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 17(6Q25.1) CNV         10    7
  AMP PEAK 17(6Q25.1) WILD-TYPE   63  114
        clus
vv       AMP PEAK 17(6Q25.1) CNV AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                       7                           114
  CLUS_2                      10                            63
D17V7, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) CNV AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                      14                            35
  CLUS_2                       4                            32
  CLUS_3                       8                            25
D17V8, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) CNV AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                      13                            33
  CLUS_2                       4                            32
  CLUS_3                       9                            27
D17V9, multiclass
D17V10, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) CNV AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                       5                            22
  CLUS_2                      16                           206
  CLUS_3                      58                           188
D17V11, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) CNV AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                      42                           127
  CLUS_2                      12                           103
  CLUS_3                      13                            75
D17V12, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) CNV AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                      17                            82
  CLUS_2                      15                           123
  CLUS_3                      33                            77
  CLUS_4                       2                            23

Clustering(18) Variable = Amp Peak 18(7q22.1)
D18V1, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) CNV AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                       2                            12
  CLUS_2                       5                            12
  CLUS_3                       2                            10
  CLUS_4                       1                             9
D18V2, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) CNV AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                       3                            16
  CLUS_2                       3                            16
  CLUS_3                       4                            11
D18V3, multiclass
D18V4, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) CNV AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                      35                           111
  CLUS_2                       9                            80
  CLUS_3                      20                           135
D18V5, multiclass
D18V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 18(7Q22.1) CNV          9   14
  AMP PEAK 18(7Q22.1) WILD-TYPE   64  107
        clus
vv       AMP PEAK 18(7Q22.1) CNV AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                      14                           107
  CLUS_2                       9                            64
D18V7, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) CNV AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                      18                            31
  CLUS_2                       4                            32
  CLUS_3                       6                            27
D18V8, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) CNV AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                      16                            30
  CLUS_2                       7                            29
  CLUS_3                       5                            31
D18V9, multiclass
D18V10, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) CNV AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                       2                            25
  CLUS_2                      26                           196
  CLUS_3                      55                           191
D18V11, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) CNV AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                      37                           132
  CLUS_2                      12                           103
  CLUS_3                      16                            72
D18V12, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) CNV AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                      14                            85
  CLUS_2                      15                           123
  CLUS_3                      28                            82
  CLUS_4                       8                            17

Clustering(19) Variable = Amp Peak 19(8p11.21)
D19V1, multiclass
        clus
vv       AMP PEAK 19(8P11.21) CNV AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                        1                             13
  CLUS_2                        8                              9
  CLUS_3                        2                             10
  CLUS_4                        0                             10
D19V2, multiclass
        clus
vv       AMP PEAK 19(8P11.21) CNV AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                        1                             18
  CLUS_2                        3                             16
  CLUS_3                        7                              8
D19V3, multiclass
D19V4, multiclass
        clus
vv       AMP PEAK 19(8P11.21) CNV AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                       59                             87
  CLUS_2                       27                             62
  CLUS_3                       39                            116
D19V5, multiclass
D19V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(8P11.21) CNV         16   24
  AMP PEAK 19(8P11.21) WILD-TYPE   57   97
        clus
vv       AMP PEAK 19(8P11.21) CNV AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                       24                             97
  CLUS_2                       16                             57
D19V7, multiclass
        clus
vv       AMP PEAK 19(8P11.21) CNV AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                       23                             26
  CLUS_2                        8                             28
  CLUS_3                       12                             21
D19V8, multiclass
        clus
vv       AMP PEAK 19(8P11.21) CNV AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                       18                             28
  CLUS_2                       12                             24
  CLUS_3                       13                             23
D19V9, multiclass
D19V10, multiclass
        clus
vv       AMP PEAK 19(8P11.21) CNV AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                       10                             17
  CLUS_2                       45                            177
  CLUS_3                       91                            155
D19V11, multiclass
        clus
vv       AMP PEAK 19(8P11.21) CNV AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                       69                            100
  CLUS_2                       27                             88
  CLUS_3                       25                             63
D19V12, multiclass
        clus
vv       AMP PEAK 19(8P11.21) CNV AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                       29                             70
  CLUS_2                       33                            105
  CLUS_3                       51                             59
  CLUS_4                        8                             17

Clustering(20) Variable = Amp Peak 20(8q24.21)
D20V1, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) CNV AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                        1                             13
  CLUS_2                        8                              9
  CLUS_3                        3                              9
  CLUS_4                        0                             10
D20V2, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) CNV AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                        2                             17
  CLUS_2                        3                             16
  CLUS_3                        7                              8
D20V3, multiclass
D20V4, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) CNV AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                       85                             61
  CLUS_2                       34                             55
  CLUS_3                       45                            110
D20V5, multiclass
D20V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(8Q24.21) CNV         22   30
  AMP PEAK 20(8Q24.21) WILD-TYPE   51   91
        clus
vv       AMP PEAK 20(8Q24.21) CNV AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                       30                             91
  CLUS_2                       22                             51
D20V7, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) CNV AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                       34                             15
  CLUS_2                       12                             24
  CLUS_3                       16                             17
D20V8, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) CNV AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                       30                             16
  CLUS_2                       16                             20
  CLUS_3                       16                             20
D20V9, multiclass
D20V10, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) CNV AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                       11                             16
  CLUS_2                       51                            171
  CLUS_3                      127                            119
D20V11, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) CNV AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                       90                             79
  CLUS_2                       32                             83
  CLUS_3                       35                             53
D20V12, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) CNV AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                       46                             53
  CLUS_2                       40                             98
  CLUS_3                       63                             47
  CLUS_4                        8                             17

Clustering(21) Variable = Amp Peak 21(8q24.21)
D21V1, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) CNV AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                        1                             13
  CLUS_2                        9                              8
  CLUS_3                        2                             10
  CLUS_4                        0                             10
D21V2, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) CNV AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                        1                             18
  CLUS_2                        3                             16
  CLUS_3                        8                              7
D21V3, multiclass
D21V4, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) CNV AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                       85                             61
  CLUS_2                       36                             53
  CLUS_3                       49                            106
D21V5, multiclass
D21V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(8Q24.21) CNV         26   30
  AMP PEAK 21(8Q24.21) WILD-TYPE   47   91
        clus
vv       AMP PEAK 21(8Q24.21) CNV AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                       30                             91
  CLUS_2                       26                             47
D21V7, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) CNV AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                       35                             14
  CLUS_2                       12                             24
  CLUS_3                       16                             17
D21V8, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) CNV AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                       31                             15
  CLUS_2                       16                             20
  CLUS_3                       16                             20
D21V9, multiclass
D21V10, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) CNV AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                       12                             15
  CLUS_2                       56                            166
  CLUS_3                      128                            118
D21V11, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) CNV AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                       94                             75
  CLUS_2                       35                             80
  CLUS_3                       35                             53
D21V12, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) CNV AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                       45                             54
  CLUS_2                       44                             94
  CLUS_3                       66                             44
  CLUS_4                        9                             16

Clustering(22) Variable = Amp Peak 22(9p24.2)
D22V1, multiclass
        clus
vv       AMP PEAK 22(9P24.2) CNV AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                       3                            11
  CLUS_2                       4                            13
  CLUS_3                       0                            12
  CLUS_4                       0                            10
D22V2, multiclass
        clus
vv       AMP PEAK 22(9P24.2) CNV AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                       3                            16
  CLUS_2                       0                            19
  CLUS_3                       4                            11
D22V3, multiclass
D22V4, multiclass
        clus
vv       AMP PEAK 22(9P24.2) CNV AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                      34                           112
  CLUS_2                       7                            82
  CLUS_3                       7                           148
D22V5, multiclass
D22V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 22(9P24.2) CNV         11    4
  AMP PEAK 22(9P24.2) WILD-TYPE   62  117
        clus
vv       AMP PEAK 22(9P24.2) CNV AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                       4                           117
  CLUS_2                      11                            62
D22V7, multiclass
        clus
vv       AMP PEAK 22(9P24.2) CNV AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                      14                            35
  CLUS_2                       3                            33
  CLUS_3                       3                            30
D22V8, multiclass
        clus
vv       AMP PEAK 22(9P24.2) CNV AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                      15                            31
  CLUS_2                       3                            33
  CLUS_3                       2                            34
D22V9, multiclass
D22V10, multiclass
        clus
vv       AMP PEAK 22(9P24.2) CNV AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                       2                            25
  CLUS_2                       8                           214
  CLUS_3                      48                           198
D22V11, multiclass
        clus
vv       AMP PEAK 22(9P24.2) CNV AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                      31                           138
  CLUS_2                       5                           110
  CLUS_3                      11                            77
D22V12, multiclass
        clus
vv       AMP PEAK 22(9P24.2) CNV AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                      14                            85
  CLUS_2                       7                           131
  CLUS_3                      25                            85
  CLUS_4                       1                            24

Clustering(23) Variable = Amp Peak 23(9q34.3)
D23V1, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) CNV AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                       0                            14
  CLUS_2                       4                            13
  CLUS_3                       1                            11
  CLUS_4                       1                             9
D23V2, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) CNV AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                       1                            18
  CLUS_2                       1                            18
  CLUS_3                       4                            11
D23V3, multiclass
D23V4, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) CNV AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                      17                           129
  CLUS_2                       6                            83
  CLUS_3                       1                           154
D23V5, multiclass
D23V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 23(9Q34.3) CNV          5    5
  AMP PEAK 23(9Q34.3) WILD-TYPE   68  116
        clus
vv       AMP PEAK 23(9Q34.3) CNV AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                       5                           116
  CLUS_2                       5                            68
D23V7, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) CNV AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                       5                            44
  CLUS_2                       0                            36
  CLUS_3                       1                            32
D23V8, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) CNV AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                       6                            40
  CLUS_2                       0                            36
  CLUS_3                       0                            36
D23V9, multiclass
D23V10, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) CNV AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                       1                            26
  CLUS_2                       3                           219
  CLUS_3                      25                           221
D23V11, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) CNV AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                      15                           154
  CLUS_2                       2                           113
  CLUS_3                       8                            80
D23V12, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) CNV AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                       8                            91
  CLUS_2                       4                           134
  CLUS_3                      10                           100
  CLUS_4                       3                            22

Clustering(24) Variable = Amp Peak 24(10q22.2)
D24V1, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) CNV AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                        2                             12
  CLUS_2                        7                             10
  CLUS_3                        8                              4
  CLUS_4                        2                              8
D24V2, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) CNV AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                        3                             16
  CLUS_2                        9                             10
  CLUS_3                        7                              8
D24V3, multiclass
D24V4, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) CNV AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                       43                            103
  CLUS_2                       19                             70
  CLUS_3                       37                            118
D24V5, multiclass
D24V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 24(10Q22.2) CNV         18   37
  AMP PEAK 24(10Q22.2) WILD-TYPE   55   84
        clus
vv       AMP PEAK 24(10Q22.2) CNV AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                       37                             84
  CLUS_2                       18                             55
D24V7, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) CNV AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                       14                             35
  CLUS_2                        5                             31
  CLUS_3                        8                             25
D24V8, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) CNV AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                       12                             34
  CLUS_2                        6                             30
  CLUS_3                        9                             27
D24V9, multiclass
D24V10, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) CNV AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                        8                             19
  CLUS_2                       64                            158
  CLUS_3                       59                            187
D24V11, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) CNV AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                       44                            125
  CLUS_2                       33                             82
  CLUS_3                       14                             74
D24V12, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) CNV AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                       17                             82
  CLUS_2                       37                            101
  CLUS_3                       32                             78
  CLUS_4                        5                             20

Clustering(25) Variable = Amp Peak 25(11p11.2)
D25V1, multiclass
        clus
vv       AMP PEAK 25(11P11.2) CNV AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                        0                             14
  CLUS_2                        6                             11
  CLUS_3                        0                             12
  CLUS_4                        0                             10
D25V2, multiclass
        clus
vv       AMP PEAK 25(11P11.2) CNV AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                        0                             19
  CLUS_2                        1                             18
  CLUS_3                        5                             10
D25V3, multiclass
D25V4, multiclass
        clus
vv       AMP PEAK 25(11P11.2) CNV AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                       22                            124
  CLUS_2                       12                             77
  CLUS_3                        4                            151
D25V5, multiclass
D25V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 25(11P11.2) CNV          5   10
  AMP PEAK 25(11P11.2) WILD-TYPE   68  111
        clus
vv       AMP PEAK 25(11P11.2) CNV AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                       10                            111
  CLUS_2                        5                             68
D25V7, multiclass
        clus
vv       AMP PEAK 25(11P11.2) CNV AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                       11                             38
  CLUS_2                        2                             34
  CLUS_3                        2                             31
D25V8, multiclass
        clus
vv       AMP PEAK 25(11P11.2) CNV AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                       11                             35
  CLUS_2                        2                             34
  CLUS_3                        2                             34
D25V9, multiclass
D25V10, multiclass
        clus
vv       AMP PEAK 25(11P11.2) CNV AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                        2                             25
  CLUS_2                        7                            215
  CLUS_3                       36                            210
D25V11, multiclass
        clus
vv       AMP PEAK 25(11P11.2) CNV AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                       23                            146
  CLUS_2                        5                            110
  CLUS_3                        8                             80
D25V12, multiclass
        clus
vv       AMP PEAK 25(11P11.2) CNV AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                       14                             85
  CLUS_2                        5                            133
  CLUS_3                       15                             95
  CLUS_4                        2                             23

Clustering(26) Variable = Amp Peak 26(11q13.2)
D26V1, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) CNV AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                        1                             13
  CLUS_2                        7                             10
  CLUS_3                        0                             12
  CLUS_4                        0                             10
D26V2, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) CNV AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                        1                             18
  CLUS_2                        1                             18
  CLUS_3                        6                              9
D26V3, multiclass
D26V4, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) CNV AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                       31                            115
  CLUS_2                       13                             76
  CLUS_3                       12                            143
D26V5, multiclass
D26V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 26(11Q13.2) CNV          9   15
  AMP PEAK 26(11Q13.2) WILD-TYPE   64  106
        clus
vv       AMP PEAK 26(11Q13.2) CNV AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                       15                            106
  CLUS_2                        9                             64
D26V7, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) CNV AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                       13                             36
  CLUS_2                        4                             32
  CLUS_3                        5                             28
D26V8, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) CNV AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                       13                             33
  CLUS_2                        4                             32
  CLUS_3                        5                             31
D26V9, multiclass
D26V10, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) CNV AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                        4                             23
  CLUS_2                       16                            206
  CLUS_3                       46                            200
D26V11, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) CNV AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                       32                            137
  CLUS_2                       12                            103
  CLUS_3                        9                             79
D26V12, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) CNV AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                       14                             85
  CLUS_2                       13                            125
  CLUS_3                       24                             86
  CLUS_4                        2                             23

Clustering(27) Variable = Amp Peak 27(11q14.1)
D27V1, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) CNV AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                        1                             13
  CLUS_2                        3                             14
  CLUS_3                        0                             12
  CLUS_4                        0                             10
D27V2, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) CNV AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                        1                             18
  CLUS_2                        1                             18
  CLUS_3                        2                             13
D27V3, multiclass
D27V4, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) CNV AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                       24                            122
  CLUS_2                       10                             79
  CLUS_3                       10                            145
D27V5, multiclass
D27V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 27(11Q14.1) CNV          3   11
  AMP PEAK 27(11Q14.1) WILD-TYPE   70  110
        clus
vv       AMP PEAK 27(11Q14.1) CNV AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                       11                            110
  CLUS_2                        3                             70
D27V7, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) CNV AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                       16                             33
  CLUS_2                        4                             32
  CLUS_3                        4                             29
D27V8, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) CNV AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                       15                             31
  CLUS_2                        4                             32
  CLUS_3                        5                             31
D27V9, multiclass
D27V10, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) CNV AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                        5                             22
  CLUS_2                       13                            209
  CLUS_3                       35                            211
D27V11, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) CNV AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                       27                            142
  CLUS_2                       10                            105
  CLUS_3                        6                             82
D27V12, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) CNV AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                       10                             89
  CLUS_2                       12                            126
  CLUS_3                       20                             90
  CLUS_4                        1                             24

Clustering(28) Variable = Amp Peak 28(12p12.1)
D28V1, multiclass
        clus
vv       AMP PEAK 28(12P12.1) CNV AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                        1                             13
  CLUS_2                        3                             14
  CLUS_3                        3                              9
  CLUS_4                        0                             10
D28V2, multiclass
        clus
vv       AMP PEAK 28(12P12.1) CNV AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                        2                             17
  CLUS_2                        2                             17
  CLUS_3                        3                             12
D28V3, multiclass
D28V4, multiclass
        clus
vv       AMP PEAK 28(12P12.1) CNV AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                       45                            101
  CLUS_2                       13                             76
  CLUS_3                        9                            146
D28V5, multiclass
D28V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 28(12P12.1) CNV         10   14
  AMP PEAK 28(12P12.1) WILD-TYPE   63  107
        clus
vv       AMP PEAK 28(12P12.1) CNV AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                       14                            107
  CLUS_2                       10                             63
D28V7, multiclass
        clus
vv       AMP PEAK 28(12P12.1) CNV AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                       18                             31
  CLUS_2                        7                             29
  CLUS_3                        0                             33
D28V8, multiclass
        clus
vv       AMP PEAK 28(12P12.1) CNV AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                       17                             29
  CLUS_2                        8                             28
  CLUS_3                        0                             36
D28V9, multiclass
D28V10, multiclass
        clus
vv       AMP PEAK 28(12P12.1) CNV AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                        0                             27
  CLUS_2                       19                            203
  CLUS_3                       63                            183
D28V11, multiclass
        clus
vv       AMP PEAK 28(12P12.1) CNV AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                       43                            126
  CLUS_2                        8                            107
  CLUS_3                       14                             74
D28V12, multiclass
        clus
vv       AMP PEAK 28(12P12.1) CNV AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                       19                             80
  CLUS_2                       10                            128
  CLUS_3                       34                             76
  CLUS_4                        2                             23

Clustering(29) Variable = Amp Peak 29(12q13.11)
D29V1, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) CNV AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                         2                              12
  CLUS_2                         4                              13
  CLUS_3                         3                               9
  CLUS_4                         0                              10
D29V2, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) CNV AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                         3                              16
  CLUS_2                         2                              17
  CLUS_3                         4                              11
D29V3, multiclass
D29V4, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) CNV AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                        43                             103
  CLUS_2                        15                              74
  CLUS_3                         8                             147
D29V5, multiclass
D29V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 29(12Q13.11) CNV         11   10
  AMP PEAK 29(12Q13.11) WILD-TYPE   62  111
        clus
vv       AMP PEAK 29(12Q13.11) CNV AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                        10                             111
  CLUS_2                        11                              62
D29V7, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) CNV AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                        16                              33
  CLUS_2                         6                              30
  CLUS_3                         3                              30
D29V8, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) CNV AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                        17                              29
  CLUS_2                         7                              29
  CLUS_3                         1                              35
D29V9, multiclass
D29V10, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) CNV AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                         2                              25
  CLUS_2                        17                             205
  CLUS_3                        62                             184
D29V11, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) CNV AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                        42                             127
  CLUS_2                         6                             109
  CLUS_3                        14                              74
D29V12, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) CNV AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                        16                              83
  CLUS_2                         9                             129
  CLUS_3                        33                              77
  CLUS_4                         4                              21

Clustering(30) Variable = Amp Peak 30(12q13.2)
D30V1, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) CNV AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                        2                             12
  CLUS_2                        5                             12
  CLUS_3                        4                              8
  CLUS_4                        0                             10
D30V2, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) CNV AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                        4                             15
  CLUS_2                        2                             17
  CLUS_3                        5                             10
D30V3, multiclass
D30V4, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) CNV AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                       46                            100
  CLUS_2                       13                             76
  CLUS_3                       13                            142
D30V5, multiclass
D30V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 30(12Q13.2) CNV         11   12
  AMP PEAK 30(12Q13.2) WILD-TYPE   62  109
        clus
vv       AMP PEAK 30(12Q13.2) CNV AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                       12                            109
  CLUS_2                       11                             62
D30V7, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) CNV AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                       15                             34
  CLUS_2                        7                             29
  CLUS_3                        5                             28
D30V8, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) CNV AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                       14                             32
  CLUS_2                        8                             28
  CLUS_3                        5                             31
D30V9, multiclass
D30V10, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) CNV AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                        2                             25
  CLUS_2                       21                            201
  CLUS_3                       64                            182
D30V11, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) CNV AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                       48                            121
  CLUS_2                       10                            105
  CLUS_3                       12                             76
D30V12, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) CNV AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                       18                             81
  CLUS_2                       13                            125
  CLUS_3                       37                             73
  CLUS_4                        2                             23

Clustering(31) Variable = Amp Peak 31(13q34)
D31V1, multiclass
        clus
vv       AMP PEAK 31(13Q34) CNV AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                      1                           13
  CLUS_2                      2                           15
  CLUS_3                      0                           12
  CLUS_4                      0                           10
D31V2, multiclass
        clus
vv       AMP PEAK 31(13Q34) CNV AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                      1                           18
  CLUS_2                      0                           19
  CLUS_3                      2                           13
D31V3, multiclass
D31V4, multiclass
        clus
vv       AMP PEAK 31(13Q34) CNV AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                     32                          114
  CLUS_2                     10                           79
  CLUS_3                      4                          151
D31V5, multiclass
D31V6, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 31(13Q34) CNV          6    2
  AMP PEAK 31(13Q34) WILD-TYPE   67  119
        clus
vv       AMP PEAK 31(13Q34) CNV AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                      2                          119
  CLUS_2                      6                           67
D31V7, multiclass
        clus
vv       AMP PEAK 31(13Q34) CNV AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                     13                           36
  CLUS_2                      0                           36
  CLUS_3                      2                           31
D31V8, multiclass
        clus
vv       AMP PEAK 31(13Q34) CNV AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                     12                           34
  CLUS_2                      2                           34
  CLUS_3                      1                           35
D31V9, multiclass
D31V10, multiclass
        clus
vv       AMP PEAK 31(13Q34) CNV AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                      1                           26
  CLUS_2                      6                          216
  CLUS_3                     44                          202
D31V11, multiclass
        clus
vv       AMP PEAK 31(13Q34) CNV AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                     31                          138
  CLUS_2                      3                          112
  CLUS_3                     11                           77
D31V12, multiclass
        clus
vv       AMP PEAK 31(13Q34) CNV AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                     15                           84
  CLUS_2                      4                          134
  CLUS_3                     24                           86
  CLUS_4                      2                           23

Clustering(32) Variable = Amp Peak 32(14q24.3)
D32V1, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) CNV AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                        1                             13
  CLUS_2                        6                             11
  CLUS_3                        1                             11
  CLUS_4                        0                             10
D32V2, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) CNV AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                        1                             18
  CLUS_2                        2                             17
  CLUS_3                        5                             10
D32V3, multiclass
D32V4, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) CNV AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                       32                            114
  CLUS_2                        9                             80
  CLUS_3                        7                            148
D32V5, multiclass
D32V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 32(14Q24.3) CNV          7    7
  AMP PEAK 32(14Q24.3) WILD-TYPE   66  114
        clus
vv       AMP PEAK 32(14Q24.3) CNV AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                        7                            114
  CLUS_2                        7                             66
D32V7, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) CNV AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                       17                             32
  CLUS_2                        2                             34
  CLUS_3                        2                             31
D32V8, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) CNV AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                       16                             30
  CLUS_2                        3                             33
  CLUS_3                        2                             34
D32V9, multiclass
D32V10, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) CNV AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                        2                             25
  CLUS_2                        9                            213
  CLUS_3                       45                            201
D32V11, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) CNV AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                       28                            141
  CLUS_2                        8                            107
  CLUS_3                       12                             76
D32V12, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) CNV AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                       18                             81
  CLUS_2                        9                            129
  CLUS_3                       20                             90
  CLUS_4                        1                             24

Clustering(33) Variable = Amp Peak 33(15q26.3)
D33V1, multiclass
[1] "Remove cluster labels:"   "AMP PEAK 33(15Q26.3) CNV"
clus
      AMP PEAK 33(15Q26.3) CNV AMP PEAK 33(15Q26.3) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0GA 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GB                     TCGA-A5-A0GE 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GH                     TCGA-A5-A0GM 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GP                     TCGA-A5-A0GU 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A051                     TCGA-AP-A052 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A053                     TCGA-AP-A054 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A056                     TCGA-AP-A05A 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05D                     TCGA-AP-A05H 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05J                     TCGA-AP-A05N 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05P                     TCGA-AP-A0L8 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0L9                     TCGA-AP-A0LD 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LG                     TCGA-AP-A0LH 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LJ                     TCGA-AP-A0LN 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LT                     TCGA-AP-A0LV 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05S                     TCGA-AX-A05T 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05U                     TCGA-AX-A05W 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05Y                     TCGA-AX-A05Z 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A060                     TCGA-AX-A062 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A063                     TCGA-AX-A064 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A06B                     TCGA-AX-A06F 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A06J                     TCGA-AX-A0IW 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A0J1                     TCGA-B5-A0JR 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-B5-A0JZ                     TCGA-B5-A0K0 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-B5-A0K1                     TCGA-B5-A0K4 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-BG-A0LW                     TCGA-BG-A0MI 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-BK-A0C9 
"AMP PEAK 33(15Q26.3) WILD-TYPE" 
D33V2, multiclass
[1] "Remove cluster labels:"   "AMP PEAK 33(15Q26.3) CNV"
clus
      AMP PEAK 33(15Q26.3) CNV AMP PEAK 33(15Q26.3) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0GA 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GB                     TCGA-A5-A0GE 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GH                     TCGA-A5-A0GM 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GP                     TCGA-A5-A0GU 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A051                     TCGA-AP-A052 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A053                     TCGA-AP-A054 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A056                     TCGA-AP-A05A 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05D                     TCGA-AP-A05H 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05J                     TCGA-AP-A05N 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05P                     TCGA-AP-A0L8 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0L9                     TCGA-AP-A0LD 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LG                     TCGA-AP-A0LH 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LJ                     TCGA-AP-A0LN 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LT                     TCGA-AP-A0LV 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05S                     TCGA-AX-A05T 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05U                     TCGA-AX-A05W 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05Y                     TCGA-AX-A05Z 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A060                     TCGA-AX-A062 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A063                     TCGA-AX-A064 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A06B                     TCGA-AX-A06F 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A06J                     TCGA-AX-A0IW 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A0J1                     TCGA-B5-A0JR 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-B5-A0JZ                     TCGA-B5-A0K0 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-B5-A0K1                     TCGA-B5-A0K4 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-BG-A0LW                     TCGA-BG-A0MI 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-BK-A0C9 
"AMP PEAK 33(15Q26.3) WILD-TYPE" 
D33V3, multiclass
D33V4, multiclass
        clus
vv       AMP PEAK 33(15Q26.3) CNV AMP PEAK 33(15Q26.3) WILD-TYPE
  CLUS_1                       17                            129
  CLUS_2                        7                             82
  CLUS_3                        6                            149
D33V5, multiclass
D33V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 33(15Q26.3) CNV          5    3
  AMP PEAK 33(15Q26.3) WILD-TYPE   68  118
        clus
vv       AMP PEAK 33(15Q26.3) CNV AMP PEAK 33(15Q26.3) WILD-TYPE
  CLUS_1                        3                            118
  CLUS_2                        5                             68
D33V7, multiclass
        clus
vv       AMP PEAK 33(15Q26.3) CNV AMP PEAK 33(15Q26.3) WILD-TYPE
  CLUS_1                        9                             40
  CLUS_2                        1                             35
  CLUS_3                        2                             31
D33V8, multiclass
        clus
vv       AMP PEAK 33(15Q26.3) CNV AMP PEAK 33(15Q26.3) WILD-TYPE
  CLUS_1                        9                             37
  CLUS_2                        2                             34
  CLUS_3                        1                             35
D33V9, multiclass
D33V10, multiclass
        clus
vv       AMP PEAK 33(15Q26.3) CNV AMP PEAK 33(15Q26.3) WILD-TYPE
  CLUS_1                        1                             26
  CLUS_2                        6                            216
  CLUS_3                       28                            218
D33V11, multiclass
        clus
vv       AMP PEAK 33(15Q26.3) CNV AMP PEAK 33(15Q26.3) WILD-TYPE
  CLUS_1                       20                            149
  CLUS_2                        3                            112
  CLUS_3                        6                             82
D33V12, multiclass
        clus
vv       AMP PEAK 33(15Q26.3) CNV AMP PEAK 33(15Q26.3) WILD-TYPE
  CLUS_1                       11                             88
  CLUS_2                        5                            133
  CLUS_3                       13                             97
  CLUS_4                        0                             25

Clustering(34) Variable = Amp Peak 34(16p11.2)
D34V1, multiclass
        clus
vv       AMP PEAK 34(16P11.2) CNV AMP PEAK 34(16P11.2) WILD-TYPE
  CLUS_1                        0                             14
  CLUS_2                        5                             12
  CLUS_3                        0                             12
  CLUS_4                        0                             10
D34V2, multiclass
        clus
vv       AMP PEAK 34(16P11.2) CNV AMP PEAK 34(16P11.2) WILD-TYPE
  CLUS_1                        0                             19
  CLUS_2                        0                             19
  CLUS_3                        5                             10
D34V3, multiclass
D34V4, multiclass
        clus
vv       AMP PEAK 34(16P11.2) CNV AMP PEAK 34(16P11.2) WILD-TYPE
  CLUS_1                       32                            114
  CLUS_2                       11                             78
  CLUS_3                        6                            149
D34V5, multiclass
D34V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 34(16P11.2) CNV         10    8
  AMP PEAK 34(16P11.2) WILD-TYPE   63  113
        clus
vv       AMP PEAK 34(16P11.2) CNV AMP PEAK 34(16P11.2) WILD-TYPE
  CLUS_1                        8                            113
  CLUS_2                       10                             63
D34V7, multiclass
        clus
vv       AMP PEAK 34(16P11.2) CNV AMP PEAK 34(16P11.2) WILD-TYPE
  CLUS_1                       14                             35
  CLUS_2                        2                             34
  CLUS_3                        2                             31
D34V8, multiclass
        clus
vv       AMP PEAK 34(16P11.2) CNV AMP PEAK 34(16P11.2) WILD-TYPE
  CLUS_1                       12                             34
  CLUS_2                        5                             31
  CLUS_3                        1                             35
D34V9, multiclass
D34V10, multiclass
        clus
vv       AMP PEAK 34(16P11.2) CNV AMP PEAK 34(16P11.2) WILD-TYPE
  CLUS_1                        1                             26
  CLUS_2                       10                            212
  CLUS_3                       43                            203
D34V11, multiclass
        clus
vv       AMP PEAK 34(16P11.2) CNV AMP PEAK 34(16P11.2) WILD-TYPE
  CLUS_1                       30                            139
  CLUS_2                        5                            110
  CLUS_3                       11                             77
D34V12, multiclass
        clus
vv       AMP PEAK 34(16P11.2) CNV AMP PEAK 34(16P11.2) WILD-TYPE
  CLUS_1                       15                             84
  CLUS_2                        6                            132
  CLUS_3                       24                             86
  CLUS_4                        1                             24

Clustering(35) Variable = Amp Peak 35(17q11.2)
D35V1, multiclass
        clus
vv       AMP PEAK 35(17Q11.2) CNV AMP PEAK 35(17Q11.2) WILD-TYPE
  CLUS_1                        1                             13
  CLUS_2                        4                             13
  CLUS_3                        0                             12
  CLUS_4                        0                             10
D35V2, multiclass
        clus
vv       AMP PEAK 35(17Q11.2) CNV AMP PEAK 35(17Q11.2) WILD-TYPE
  CLUS_1                        1                             18
  CLUS_2                        0                             19
  CLUS_3                        4                             11
D35V3, multiclass
D35V4, multiclass
        clus
vv       AMP PEAK 35(17Q11.2) CNV AMP PEAK 35(17Q11.2) WILD-TYPE
  CLUS_1                       44                            102
  CLUS_2                        9                             80
  CLUS_3                        4                            151
D35V5, multiclass
D35V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 35(17Q11.2) CNV         10    3
  AMP PEAK 35(17Q11.2) WILD-TYPE   63  118
        clus
vv       AMP PEAK 35(17Q11.2) CNV AMP PEAK 35(17Q11.2) WILD-TYPE
  CLUS_1                        3                            118
  CLUS_2                       10                             63
D35V7, multiclass
        clus
vv       AMP PEAK 35(17Q11.2) CNV AMP PEAK 35(17Q11.2) WILD-TYPE
  CLUS_1                       19                             30
  CLUS_2                        5                             31
  CLUS_3                        3                             30
D35V8, multiclass
        clus
vv       AMP PEAK 35(17Q11.2) CNV AMP PEAK 35(17Q11.2) WILD-TYPE
  CLUS_1                       16                             30
  CLUS_2                        9                             27
  CLUS_3                        2                             34
D35V9, multiclass
D35V10, multiclass
        clus
vv       AMP PEAK 35(17Q11.2) CNV AMP PEAK 35(17Q11.2) WILD-TYPE
  CLUS_1                        3                             24
  CLUS_2                        4                            218
  CLUS_3                       55                            191
D35V11, multiclass
        clus
vv       AMP PEAK 35(17Q11.2) CNV AMP PEAK 35(17Q11.2) WILD-TYPE
  CLUS_1                       38                            131
  CLUS_2                        4                            111
  CLUS_3                       12                             76
D35V12, multiclass
        clus
vv       AMP PEAK 35(17Q11.2) CNV AMP PEAK 35(17Q11.2) WILD-TYPE
  CLUS_1                       16                             83
  CLUS_2                        4                            134
  CLUS_3                       32                             78
  CLUS_4                        2                             23

Clustering(36) Variable = Amp Peak 36(17q12)
D36V1, multiclass
        clus
vv       AMP PEAK 36(17Q12) CNV AMP PEAK 36(17Q12) WILD-TYPE
  CLUS_1                      0                           14
  CLUS_2                      4                           13
  CLUS_3                      1                           11
  CLUS_4                      0                           10
D36V2, multiclass
        clus
vv       AMP PEAK 36(17Q12) CNV AMP PEAK 36(17Q12) WILD-TYPE
  CLUS_1                      1                           18
  CLUS_2                      0                           19
  CLUS_3                      4                           11
D36V3, multiclass
D36V4, multiclass
        clus
vv       AMP PEAK 36(17Q12) CNV AMP PEAK 36(17Q12) WILD-TYPE
  CLUS_1                     44                          102
  CLUS_2                      8                           81
  CLUS_3                      2                          153
D36V5, multiclass
D36V6, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 36(17Q12) CNV          8    9
  AMP PEAK 36(17Q12) WILD-TYPE   65  112
        clus
vv       AMP PEAK 36(17Q12) CNV AMP PEAK 36(17Q12) WILD-TYPE
  CLUS_1                      9                          112
  CLUS_2                      8                           65
D36V7, multiclass
        clus
vv       AMP PEAK 36(17Q12) CNV AMP PEAK 36(17Q12) WILD-TYPE
  CLUS_1                     17                           32
  CLUS_2                      3                           33
  CLUS_3                      1                           32
D36V8, multiclass
        clus
vv       AMP PEAK 36(17Q12) CNV AMP PEAK 36(17Q12) WILD-TYPE
  CLUS_1                     13                           33
  CLUS_2                      7                           29
  CLUS_3                      1                           35
D36V9, multiclass
D36V10, multiclass
        clus
vv       AMP PEAK 36(17Q12) CNV AMP PEAK 36(17Q12) WILD-TYPE
  CLUS_1                      1                           26
  CLUS_2                      5                          217
  CLUS_3                     58                          188
D36V11, multiclass
        clus
vv       AMP PEAK 36(17Q12) CNV AMP PEAK 36(17Q12) WILD-TYPE
  CLUS_1                     34                          135
  CLUS_2                      3                          112
  CLUS_3                     15                           73
D36V12, multiclass
        clus
vv       AMP PEAK 36(17Q12) CNV AMP PEAK 36(17Q12) WILD-TYPE
  CLUS_1                     19                           80
  CLUS_2                      3                          135
  CLUS_3                     30                           80
  CLUS_4                      0                           25

Clustering(37) Variable = Amp Peak 37(17q25.1)
D37V1, multiclass
        clus
vv       AMP PEAK 37(17Q25.1) CNV AMP PEAK 37(17Q25.1) WILD-TYPE
  CLUS_1                        0                             14
  CLUS_2                        9                              8
  CLUS_3                        1                             11
  CLUS_4                        0                             10
D37V2, multiclass
        clus
vv       AMP PEAK 37(17Q25.1) CNV AMP PEAK 37(17Q25.1) WILD-TYPE
  CLUS_1                        1                             18
  CLUS_2                        0                             19
  CLUS_3                        9                              6
D37V3, multiclass
D37V4, multiclass
        clus
vv       AMP PEAK 37(17Q25.1) CNV AMP PEAK 37(17Q25.1) WILD-TYPE
  CLUS_1                       50                             96
  CLUS_2                       16                             73
  CLUS_3                        8                            147
D37V5, multiclass
D37V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 37(17Q25.1) CNV         13   13
  AMP PEAK 37(17Q25.1) WILD-TYPE   60  108
        clus
vv       AMP PEAK 37(17Q25.1) CNV AMP PEAK 37(17Q25.1) WILD-TYPE
  CLUS_1                       13                            108
  CLUS_2                       13                             60
D37V7, multiclass
        clus
vv       AMP PEAK 37(17Q25.1) CNV AMP PEAK 37(17Q25.1) WILD-TYPE
  CLUS_1                       26                             23
  CLUS_2                        2                             34
  CLUS_3                        7                             26
D37V8, multiclass
        clus
vv       AMP PEAK 37(17Q25.1) CNV AMP PEAK 37(17Q25.1) WILD-TYPE
  CLUS_1                       21                             25
  CLUS_2                        7                             29
  CLUS_3                        7                             29
D37V9, multiclass
D37V10, multiclass
        clus
vv       AMP PEAK 37(17Q25.1) CNV AMP PEAK 37(17Q25.1) WILD-TYPE
  CLUS_1                        4                             23
  CLUS_2                       12                            210
  CLUS_3                       74                            172
D37V11, multiclass
        clus
vv       AMP PEAK 37(17Q25.1) CNV AMP PEAK 37(17Q25.1) WILD-TYPE
  CLUS_1                       44                            125
  CLUS_2                        8                            107
  CLUS_3                       18                             70
D37V12, multiclass
        clus
vv       AMP PEAK 37(17Q25.1) CNV AMP PEAK 37(17Q25.1) WILD-TYPE
  CLUS_1                       27                             72
  CLUS_2                        9                            129
  CLUS_3                       32                             78
  CLUS_4                        2                             23

Clustering(38) Variable = Amp Peak 38(18p11.31)
D38V1, multiclass
        clus
vv       AMP PEAK 38(18P11.31) CNV AMP PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                         1                              13
  CLUS_2                         5                              12
  CLUS_3                         1                              11
  CLUS_4                         0                              10
D38V2, multiclass
        clus
vv       AMP PEAK 38(18P11.31) CNV AMP PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                         1                              18
  CLUS_2                         1                              18
  CLUS_3                         5                              10
D38V3, multiclass
D38V4, multiclass
        clus
vv       AMP PEAK 38(18P11.31) CNV AMP PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                        50                              96
  CLUS_2                        16                              73
  CLUS_3                         6                             149
D38V5, multiclass
D38V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 38(18P11.31) CNV         11    6
  AMP PEAK 38(18P11.31) WILD-TYPE   62  115
        clus
vv       AMP PEAK 38(18P11.31) CNV AMP PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                         6                             115
  CLUS_2                        11                              62
D38V7, multiclass
        clus
vv       AMP PEAK 38(18P11.31) CNV AMP PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                        23                              26
  CLUS_2                         5                              31
  CLUS_3                         4                              29
D38V8, multiclass
        clus
vv       AMP PEAK 38(18P11.31) CNV AMP PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                        20                              26
  CLUS_2                         9                              27
  CLUS_3                         3                              33
D38V9, multiclass
D38V10, multiclass
        clus
vv       AMP PEAK 38(18P11.31) CNV AMP PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                         1                              26
  CLUS_2                        10                             212
  CLUS_3                        71                             175
D38V11, multiclass
        clus
vv       AMP PEAK 38(18P11.31) CNV AMP PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                        45                             124
  CLUS_2                         5                             110
  CLUS_3                        20                              68
D38V12, multiclass
        clus
vv       AMP PEAK 38(18P11.31) CNV AMP PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                        26                              73
  CLUS_2                         5                             133
  CLUS_3                        37                              73
  CLUS_4                         2                              23

Clustering(39) Variable = Amp Peak 39(18q11.2)
D39V1, multiclass
        clus
vv       AMP PEAK 39(18Q11.2) CNV AMP PEAK 39(18Q11.2) WILD-TYPE
  CLUS_1                        0                             14
  CLUS_2                        4                             13
  CLUS_3                        1                             11
  CLUS_4                        0                             10
D39V2, multiclass
        clus
vv       AMP PEAK 39(18Q11.2) CNV AMP PEAK 39(18Q11.2) WILD-TYPE
  CLUS_1                        0                             19
  CLUS_2                        1                             18
  CLUS_3                        4                             11
D39V3, multiclass
D39V4, multiclass
        clus
vv       AMP PEAK 39(18Q11.2) CNV AMP PEAK 39(18Q11.2) WILD-TYPE
  CLUS_1                       38                            108
  CLUS_2                       15                             74
  CLUS_3                        3                            152
D39V5, multiclass
D39V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 39(18Q11.2) CNV          9    5
  AMP PEAK 39(18Q11.2) WILD-TYPE   64  116
        clus
vv       AMP PEAK 39(18Q11.2) CNV AMP PEAK 39(18Q11.2) WILD-TYPE
  CLUS_1                        5                            116
  CLUS_2                        9                             64
D39V7, multiclass
        clus
vv       AMP PEAK 39(18Q11.2) CNV AMP PEAK 39(18Q11.2) WILD-TYPE
  CLUS_1                       24                             25
  CLUS_2                        2                             34
  CLUS_3                        1                             32
D39V8, multiclass
        clus
vv       AMP PEAK 39(18Q11.2) CNV AMP PEAK 39(18Q11.2) WILD-TYPE
  CLUS_1                       20                             26
  CLUS_2                        6                             30
  CLUS_3                        1                             35
D39V9, multiclass
D39V10, multiclass
        clus
vv       AMP PEAK 39(18Q11.2) CNV AMP PEAK 39(18Q11.2) WILD-TYPE
  CLUS_1                        1                             26
  CLUS_2                        5                            217
  CLUS_3                       57                            189
D39V11, multiclass
        clus
vv       AMP PEAK 39(18Q11.2) CNV AMP PEAK 39(18Q11.2) WILD-TYPE
  CLUS_1                       39                            130
  CLUS_2                        1                            114
  CLUS_3                       13                             75
D39V12, multiclass
        clus
vv       AMP PEAK 39(18Q11.2) CNV AMP PEAK 39(18Q11.2) WILD-TYPE
  CLUS_1                       21                             78
  CLUS_2                        1                            137
  CLUS_3                       29                             81
  CLUS_4                        2                             23

Clustering(40) Variable = Amp Peak 40(19p13.2)
D40V1, multiclass
        clus
vv       AMP PEAK 40(19P13.2) CNV AMP PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                        0                             14
  CLUS_2                        9                              8
  CLUS_3                        0                             12
  CLUS_4                        0                             10
D40V2, multiclass
        clus
vv       AMP PEAK 40(19P13.2) CNV AMP PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                        0                             19
  CLUS_2                        0                             19
  CLUS_3                        9                              6
D40V3, multiclass
D40V4, multiclass
        clus
vv       AMP PEAK 40(19P13.2) CNV AMP PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                       47                             99
  CLUS_2                       20                             69
  CLUS_3                        8                            147
D40V5, multiclass
D40V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 40(19P13.2) CNV         11    7
  AMP PEAK 40(19P13.2) WILD-TYPE   62  114
        clus
vv       AMP PEAK 40(19P13.2) CNV AMP PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                        7                            114
  CLUS_2                       11                             62
D40V7, multiclass
        clus
vv       AMP PEAK 40(19P13.2) CNV AMP PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                       22                             27
  CLUS_2                        0                             36
  CLUS_3                        8                             25
D40V8, multiclass
        clus
vv       AMP PEAK 40(19P13.2) CNV AMP PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                       24                             22
  CLUS_2                        0                             36
  CLUS_3                        6                             30
D40V9, multiclass
D40V10, multiclass
        clus
vv       AMP PEAK 40(19P13.2) CNV AMP PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                        4                             23
  CLUS_2                       14                            208
  CLUS_3                       65                            181
D40V11, multiclass
        clus
vv       AMP PEAK 40(19P13.2) CNV AMP PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                       45                            124
  CLUS_2                        9                            106
  CLUS_3                       17                             71
D40V12, multiclass
        clus
vv       AMP PEAK 40(19P13.2) CNV AMP PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                       20                             79
  CLUS_2                       11                            127
  CLUS_3                       37                             73
  CLUS_4                        3                             22

Clustering(41) Variable = Amp Peak 41(19p13.11)
D41V1, multiclass
        clus
vv       AMP PEAK 41(19P13.11) CNV AMP PEAK 41(19P13.11) WILD-TYPE
  CLUS_1                         1                              13
  CLUS_2                         7                              10
  CLUS_3                         0                              12
  CLUS_4                         0                              10
D41V2, multiclass
        clus
vv       AMP PEAK 41(19P13.11) CNV AMP PEAK 41(19P13.11) WILD-TYPE
  CLUS_1                         1                              18
  CLUS_2                         0                              19
  CLUS_3                         7                               8
D41V3, multiclass
D41V4, multiclass
        clus
vv       AMP PEAK 41(19P13.11) CNV AMP PEAK 41(19P13.11) WILD-TYPE
  CLUS_1                        50                              96
  CLUS_2                        18                              71
  CLUS_3                         7                             148
D41V5, multiclass
D41V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 41(19P13.11) CNV          9    9
  AMP PEAK 41(19P13.11) WILD-TYPE   64  112
        clus
vv       AMP PEAK 41(19P13.11) CNV AMP PEAK 41(19P13.11) WILD-TYPE
  CLUS_1                         9                             112
  CLUS_2                         9                              64
D41V7, multiclass
        clus
vv       AMP PEAK 41(19P13.11) CNV AMP PEAK 41(19P13.11) WILD-TYPE
  CLUS_1                        28                              21
  CLUS_2                         0                              36
  CLUS_3                         6                              27
D41V8, multiclass
        clus
vv       AMP PEAK 41(19P13.11) CNV AMP PEAK 41(19P13.11) WILD-TYPE
  CLUS_1                        28                              18
  CLUS_2                         2                              34
  CLUS_3                         4                              32
D41V9, multiclass
D41V10, multiclass
        clus
vv       AMP PEAK 41(19P13.11) CNV AMP PEAK 41(19P13.11) WILD-TYPE
  CLUS_1                         3                              24
  CLUS_2                        13                             209
  CLUS_3                        69                             177
D41V11, multiclass
        clus
vv       AMP PEAK 41(19P13.11) CNV AMP PEAK 41(19P13.11) WILD-TYPE
  CLUS_1                        46                             123
  CLUS_2                         7                             108
  CLUS_3                        19                              69
D41V12, multiclass
        clus
vv       AMP PEAK 41(19P13.11) CNV AMP PEAK 41(19P13.11) WILD-TYPE
  CLUS_1                        23                              76
  CLUS_2                         9                             129
  CLUS_3                        37                              73
  CLUS_4                         3                              22

Clustering(42) Variable = Amp Peak 42(19q12)
D42V1, multiclass
        clus
vv       AMP PEAK 42(19Q12) CNV AMP PEAK 42(19Q12) WILD-TYPE
  CLUS_1                      1                           13
  CLUS_2                      8                            9
  CLUS_3                      1                           11
  CLUS_4                      0                           10
D42V2, multiclass
        clus
vv       AMP PEAK 42(19Q12) CNV AMP PEAK 42(19Q12) WILD-TYPE
  CLUS_1                      2                           17
  CLUS_2                      0                           19
  CLUS_3                      8                            7
D42V3, multiclass
D42V4, multiclass
        clus
vv       AMP PEAK 42(19Q12) CNV AMP PEAK 42(19Q12) WILD-TYPE
  CLUS_1                     64                           82
  CLUS_2                     21                           68
  CLUS_3                      8                          147
D42V5, multiclass
D42V6, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 42(19Q12) CNV         10    9
  AMP PEAK 42(19Q12) WILD-TYPE   63  112
        clus
vv       AMP PEAK 42(19Q12) CNV AMP PEAK 42(19Q12) WILD-TYPE
  CLUS_1                      9                          112
  CLUS_2                     10                           63
D42V7, multiclass
        clus
vv       AMP PEAK 42(19Q12) CNV AMP PEAK 42(19Q12) WILD-TYPE
  CLUS_1                     29                           20
  CLUS_2                      5                           31
  CLUS_3                      9                           24
D42V8, multiclass
        clus
vv       AMP PEAK 42(19Q12) CNV AMP PEAK 42(19Q12) WILD-TYPE
  CLUS_1                     28                           18
  CLUS_2                      8                           28
  CLUS_3                      7                           29
D42V9, multiclass
D42V10, multiclass
        clus
vv       AMP PEAK 42(19Q12) CNV AMP PEAK 42(19Q12) WILD-TYPE
  CLUS_1                      4                           23
  CLUS_2                     13                          209
  CLUS_3                     86                          160
D42V11, multiclass
        clus
vv       AMP PEAK 42(19Q12) CNV AMP PEAK 42(19Q12) WILD-TYPE
  CLUS_1                     57                          112
  CLUS_2                      9                          106
  CLUS_3                     24                           64
D42V12, multiclass
        clus
vv       AMP PEAK 42(19Q12) CNV AMP PEAK 42(19Q12) WILD-TYPE
  CLUS_1                     28                           71
  CLUS_2                     11                          127
  CLUS_3                     48                           62
  CLUS_4                      3                           22

Clustering(43) Variable = Amp Peak 43(20p13)
D43V1, multiclass
        clus
vv       AMP PEAK 43(20P13) CNV AMP PEAK 43(20P13) WILD-TYPE
  CLUS_1                      1                           13
  CLUS_2                      4                           13
  CLUS_3                      0                           12
  CLUS_4                      0                           10
D43V2, multiclass
        clus
vv       AMP PEAK 43(20P13) CNV AMP PEAK 43(20P13) WILD-TYPE
  CLUS_1                      1                           18
  CLUS_2                      0                           19
  CLUS_3                      4                           11
D43V3, multiclass
D43V4, multiclass
        clus
vv       AMP PEAK 43(20P13) CNV AMP PEAK 43(20P13) WILD-TYPE
  CLUS_1                     61                           85
  CLUS_2                     18                           71
  CLUS_3                     16                          139
D43V5, multiclass
D43V6, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 43(20P13) CNV         12   14
  AMP PEAK 43(20P13) WILD-TYPE   61  107
        clus
vv       AMP PEAK 43(20P13) CNV AMP PEAK 43(20P13) WILD-TYPE
  CLUS_1                     14                          107
  CLUS_2                     12                           61
D43V7, multiclass
        clus
vv       AMP PEAK 43(20P13) CNV AMP PEAK 43(20P13) WILD-TYPE
  CLUS_1                     23                           26
  CLUS_2                      4                           32
  CLUS_3                      9                           24
D43V8, multiclass
        clus
vv       AMP PEAK 43(20P13) CNV AMP PEAK 43(20P13) WILD-TYPE
  CLUS_1                     22                           24
  CLUS_2                      5                           31
  CLUS_3                      9                           27
D43V9, multiclass
D43V10, multiclass
        clus
vv       AMP PEAK 43(20P13) CNV AMP PEAK 43(20P13) WILD-TYPE
  CLUS_1                      3                           24
  CLUS_2                     21                          201
  CLUS_3                     82                          164
D43V11, multiclass
        clus
vv       AMP PEAK 43(20P13) CNV AMP PEAK 43(20P13) WILD-TYPE
  CLUS_1                     58                          111
  CLUS_2                     14                          101
  CLUS_3                     17                           71
D43V12, multiclass
        clus
vv       AMP PEAK 43(20P13) CNV AMP PEAK 43(20P13) WILD-TYPE
  CLUS_1                     23                           76
  CLUS_2                     15                          123
  CLUS_3                     46                           64
  CLUS_4                      5                           20

Clustering(44) Variable = Amp Peak 44(20q11.21)
D44V1, multiclass
        clus
vv       AMP PEAK 44(20Q11.21) CNV AMP PEAK 44(20Q11.21) WILD-TYPE
  CLUS_1                         2                              12
  CLUS_2                         8                               9
  CLUS_3                         0                              12
  CLUS_4                         0                              10
D44V2, multiclass
        clus
vv       AMP PEAK 44(20Q11.21) CNV AMP PEAK 44(20Q11.21) WILD-TYPE
  CLUS_1                         2                              17
  CLUS_2                         0                              19
  CLUS_3                         8                               7
D44V3, multiclass
D44V4, multiclass
        clus
vv       AMP PEAK 44(20Q11.21) CNV AMP PEAK 44(20Q11.21) WILD-TYPE
  CLUS_1                        73                              73
  CLUS_2                        22                              67
  CLUS_3                        20                             135
D44V5, multiclass
D44V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 44(20Q11.21) CNV         14   14
  AMP PEAK 44(20Q11.21) WILD-TYPE   59  107
        clus
vv       AMP PEAK 44(20Q11.21) CNV AMP PEAK 44(20Q11.21) WILD-TYPE
  CLUS_1                        14                             107
  CLUS_2                        14                              59
D44V7, multiclass
        clus
vv       AMP PEAK 44(20Q11.21) CNV AMP PEAK 44(20Q11.21) WILD-TYPE
  CLUS_1                        32                              17
  CLUS_2                         6                              30
  CLUS_3                        11                              22
D44V8, multiclass
        clus
vv       AMP PEAK 44(20Q11.21) CNV AMP PEAK 44(20Q11.21) WILD-TYPE
  CLUS_1                        28                              18
  CLUS_2                        12                              24
  CLUS_3                         9                              27
D44V9, multiclass
D44V10, multiclass
        clus
vv       AMP PEAK 44(20Q11.21) CNV AMP PEAK 44(20Q11.21) WILD-TYPE
  CLUS_1                         4                              23
  CLUS_2                        27                             195
  CLUS_3                        99                             147
D44V11, multiclass
        clus
vv       AMP PEAK 44(20Q11.21) CNV AMP PEAK 44(20Q11.21) WILD-TYPE
  CLUS_1                        71                              98
  CLUS_2                        20                              95
  CLUS_3                        20                              68
D44V12, multiclass
        clus
vv       AMP PEAK 44(20Q11.21) CNV AMP PEAK 44(20Q11.21) WILD-TYPE
  CLUS_1                        24                              75
  CLUS_2                        23                             115
  CLUS_3                        58                              52
  CLUS_4                         6                              19

Clustering(45) Variable = Amp Peak 45(20q13.12)
D45V1, multiclass
        clus
vv       AMP PEAK 45(20Q13.12) CNV AMP PEAK 45(20Q13.12) WILD-TYPE
  CLUS_1                         1                              13
  CLUS_2                         6                              11
  CLUS_3                         0                              12
  CLUS_4                         0                              10
D45V2, multiclass
        clus
vv       AMP PEAK 45(20Q13.12) CNV AMP PEAK 45(20Q13.12) WILD-TYPE
  CLUS_1                         1                              18
  CLUS_2                         0                              19
  CLUS_3                         6                               9
D45V3, multiclass
D45V4, multiclass
        clus
vv       AMP PEAK 45(20Q13.12) CNV AMP PEAK 45(20Q13.12) WILD-TYPE
  CLUS_1                        81                              65
  CLUS_2                        22                              67
  CLUS_3                        23                             132
D45V5, multiclass
D45V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 45(20Q13.12) CNV         16   15
  AMP PEAK 45(20Q13.12) WILD-TYPE   57  106
        clus
vv       AMP PEAK 45(20Q13.12) CNV AMP PEAK 45(20Q13.12) WILD-TYPE
  CLUS_1                        15                             106
  CLUS_2                        16                              57
D45V7, multiclass
        clus
vv       AMP PEAK 45(20Q13.12) CNV AMP PEAK 45(20Q13.12) WILD-TYPE
  CLUS_1                        33                              16
  CLUS_2                         7                              29
  CLUS_3                        12                              21
D45V8, multiclass
        clus
vv       AMP PEAK 45(20Q13.12) CNV AMP PEAK 45(20Q13.12) WILD-TYPE
  CLUS_1                        29                              17
  CLUS_2                        13                              23
  CLUS_3                        10                              26
D45V9, multiclass
D45V10, multiclass
        clus
vv       AMP PEAK 45(20Q13.12) CNV AMP PEAK 45(20Q13.12) WILD-TYPE
  CLUS_1                         6                              21
  CLUS_2                        29                             193
  CLUS_3                       104                             142
D45V11, multiclass
        clus
vv       AMP PEAK 45(20Q13.12) CNV AMP PEAK 45(20Q13.12) WILD-TYPE
  CLUS_1                        75                              94
  CLUS_2                        22                              93
  CLUS_3                        23                              65
D45V12, multiclass
        clus
vv       AMP PEAK 45(20Q13.12) CNV AMP PEAK 45(20Q13.12) WILD-TYPE
  CLUS_1                        25                              74
  CLUS_2                        26                             112
  CLUS_3                        63                              47
  CLUS_4                         6                              19

Clustering(46) Variable = Amp Peak 46(20q13.33)
D46V1, multiclass
        clus
vv       AMP PEAK 46(20Q13.33) CNV AMP PEAK 46(20Q13.33) WILD-TYPE
  CLUS_1                         2                              12
  CLUS_2                         6                              11
  CLUS_3                         0                              12
  CLUS_4                         0                              10
D46V2, multiclass
        clus
vv       AMP PEAK 46(20Q13.33) CNV AMP PEAK 46(20Q13.33) WILD-TYPE
  CLUS_1                         2                              17
  CLUS_2                         0                              19
  CLUS_3                         6                               9
D46V3, multiclass
D46V4, multiclass
        clus
vv       AMP PEAK 46(20Q13.33) CNV AMP PEAK 46(20Q13.33) WILD-TYPE
  CLUS_1                        75                              71
  CLUS_2                        22                              67
  CLUS_3                        24                             131
D46V5, multiclass
D46V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 46(20Q13.33) CNV         13   18
  AMP PEAK 46(20Q13.33) WILD-TYPE   60  103
        clus
vv       AMP PEAK 46(20Q13.33) CNV AMP PEAK 46(20Q13.33) WILD-TYPE
  CLUS_1                        18                             103
  CLUS_2                        13                              60
D46V7, multiclass
        clus
vv       AMP PEAK 46(20Q13.33) CNV AMP PEAK 46(20Q13.33) WILD-TYPE
  CLUS_1                        31                              18
  CLUS_2                         8                              28
  CLUS_3                        12                              21
D46V8, multiclass
        clus
vv       AMP PEAK 46(20Q13.33) CNV AMP PEAK 46(20Q13.33) WILD-TYPE
  CLUS_1                        27                              19
  CLUS_2                        13                              23
  CLUS_3                        11                              25
D46V9, multiclass
D46V10, multiclass
        clus
vv       AMP PEAK 46(20Q13.33) CNV AMP PEAK 46(20Q13.33) WILD-TYPE
  CLUS_1                         5                              22
  CLUS_2                        30                             192
  CLUS_3                       100                             146
D46V11, multiclass
        clus
vv       AMP PEAK 46(20Q13.33) CNV AMP PEAK 46(20Q13.33) WILD-TYPE
  CLUS_1                        70                              99
  CLUS_2                        22                              93
  CLUS_3                        23                              65
D46V12, multiclass
        clus
vv       AMP PEAK 46(20Q13.33) CNV AMP PEAK 46(20Q13.33) WILD-TYPE
  CLUS_1                        26                              73
  CLUS_2                        25                             113
  CLUS_3                        58                              52
  CLUS_4                         6                              19

Clustering(47) Variable = Amp Peak 47(22q12.2)
D47V1, multiclass
        clus
vv       AMP PEAK 47(22Q12.2) CNV AMP PEAK 47(22Q12.2) WILD-TYPE
  CLUS_1                        1                             13
  CLUS_2                        3                             14
  CLUS_3                        0                             12
  CLUS_4                        0                             10
D47V2, multiclass
        clus
vv       AMP PEAK 47(22Q12.2) CNV AMP PEAK 47(22Q12.2) WILD-TYPE
  CLUS_1                        1                             18
  CLUS_2                        0                             19
  CLUS_3                        3                             12
D47V3, multiclass
D47V4, multiclass
        clus
vv       AMP PEAK 47(22Q12.2) CNV AMP PEAK 47(22Q12.2) WILD-TYPE
  CLUS_1                       43                            103
  CLUS_2                        8                             81
  CLUS_3                        0                            155
D47V5, multiclass
D47V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 47(22Q12.2) CNV          6    2
  AMP PEAK 47(22Q12.2) WILD-TYPE   67  119
        clus
vv       AMP PEAK 47(22Q12.2) CNV AMP PEAK 47(22Q12.2) WILD-TYPE
  CLUS_1                        2                            119
  CLUS_2                        6                             67
D47V7, multiclass
        clus
vv       AMP PEAK 47(22Q12.2) CNV AMP PEAK 47(22Q12.2) WILD-TYPE
  CLUS_1                       15                             34
  CLUS_2                        4                             32
  CLUS_3                        1                             32
D47V8, multiclass
        clus
vv       AMP PEAK 47(22Q12.2) CNV AMP PEAK 47(22Q12.2) WILD-TYPE
  CLUS_1                       12                             34
  CLUS_2                        8                             28
  CLUS_3                        0                             36
D47V9, multiclass
D47V10, multiclass
        clus
vv       AMP PEAK 47(22Q12.2) CNV AMP PEAK 47(22Q12.2) WILD-TYPE
  CLUS_1                        0                             27
  CLUS_2                        2                            220
  CLUS_3                       53                            193
D47V11, multiclass
        clus
vv       AMP PEAK 47(22Q12.2) CNV AMP PEAK 47(22Q12.2) WILD-TYPE
  CLUS_1                       42                            127
  CLUS_2                        1                            114
  CLUS_3                        7                             81
D47V12, multiclass
        clus
vv       AMP PEAK 47(22Q12.2) CNV AMP PEAK 47(22Q12.2) WILD-TYPE
  CLUS_1                       15                             84
  CLUS_2                        1                            137
  CLUS_3                       34                             76
  CLUS_4                        0                             25

Clustering(48) Variable = Amp Peak 48(Xp11.23)
D48V1, multiclass
        clus
vv       AMP PEAK 48(XP11.23) CNV AMP PEAK 48(XP11.23) WILD-TYPE
  CLUS_1                        1                             13
  CLUS_2                        4                             13
  CLUS_3                        2                             10
  CLUS_4                        0                             10
D48V2, multiclass
        clus
vv       AMP PEAK 48(XP11.23) CNV AMP PEAK 48(XP11.23) WILD-TYPE
  CLUS_1                        2                             17
  CLUS_2                        2                             17
  CLUS_3                        3                             12
D48V3, multiclass
D48V4, multiclass
        clus
vv       AMP PEAK 48(XP11.23) CNV AMP PEAK 48(XP11.23) WILD-TYPE
  CLUS_1                       34                            112
  CLUS_2                       17                             72
  CLUS_3                       15                            140
D48V5, multiclass
D48V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 48(XP11.23) CNV          8   20
  AMP PEAK 48(XP11.23) WILD-TYPE   65  101
        clus
vv       AMP PEAK 48(XP11.23) CNV AMP PEAK 48(XP11.23) WILD-TYPE
  CLUS_1                       20                            101
  CLUS_2                        8                             65
D48V7, multiclass
        clus
vv       AMP PEAK 48(XP11.23) CNV AMP PEAK 48(XP11.23) WILD-TYPE
  CLUS_1                       18                             31
  CLUS_2                        4                             32
  CLUS_3                        3                             30
D48V8, multiclass
        clus
vv       AMP PEAK 48(XP11.23) CNV AMP PEAK 48(XP11.23) WILD-TYPE
  CLUS_1                       17                             29
  CLUS_2                        6                             30
  CLUS_3                        2                             34
D48V9, multiclass
D48V10, multiclass
        clus
vv       AMP PEAK 48(XP11.23) CNV AMP PEAK 48(XP11.23) WILD-TYPE
  CLUS_1                        4                             23
  CLUS_2                       26                            196
  CLUS_3                       54                            192
D48V11, multiclass
        clus
vv       AMP PEAK 48(XP11.23) CNV AMP PEAK 48(XP11.23) WILD-TYPE
  CLUS_1                       39                            130
  CLUS_2                       12                            103
  CLUS_3                       14                             74
D48V12, multiclass
        clus
vv       AMP PEAK 48(XP11.23) CNV AMP PEAK 48(XP11.23) WILD-TYPE
  CLUS_1                       18                             81
  CLUS_2                       16                            122
  CLUS_3                       28                             82
  CLUS_4                        3                             22

Clustering(49) Variable = Amp Peak 49(Xq28)
D49V1, multiclass
        clus
vv       AMP PEAK 49(XQ28) CNV AMP PEAK 49(XQ28) WILD-TYPE
  CLUS_1                     2                          12
  CLUS_2                     6                          11
  CLUS_3                     2                          10
  CLUS_4                     0                          10
D49V2, multiclass
        clus
vv       AMP PEAK 49(XQ28) CNV AMP PEAK 49(XQ28) WILD-TYPE
  CLUS_1                     3                          16
  CLUS_2                     1                          18
  CLUS_3                     6                           9
D49V3, multiclass
D49V4, multiclass
        clus
vv       AMP PEAK 49(XQ28) CNV AMP PEAK 49(XQ28) WILD-TYPE
  CLUS_1                    30                         116
  CLUS_2                    17                          72
  CLUS_3                    17                         138
D49V5, multiclass
D49V6, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 49(XQ28) CNV         12   16
  AMP PEAK 49(XQ28) WILD-TYPE   61  105
        clus
vv       AMP PEAK 49(XQ28) CNV AMP PEAK 49(XQ28) WILD-TYPE
  CLUS_1                    16                         105
  CLUS_2                    12                          61
D49V7, multiclass
        clus
vv       AMP PEAK 49(XQ28) CNV AMP PEAK 49(XQ28) WILD-TYPE
  CLUS_1                    14                          35
  CLUS_2                     6                          30
  CLUS_3                     5                          28
D49V8, multiclass
        clus
vv       AMP PEAK 49(XQ28) CNV AMP PEAK 49(XQ28) WILD-TYPE
  CLUS_1                    14                          32
  CLUS_2                     6                          30
  CLUS_3                     5                          31
D49V9, multiclass
D49V10, multiclass
        clus
vv       AMP PEAK 49(XQ28) CNV AMP PEAK 49(XQ28) WILD-TYPE
  CLUS_1                     5                          22
  CLUS_2                    28                         194
  CLUS_3                    51                         195
D49V11, multiclass
        clus
vv       AMP PEAK 49(XQ28) CNV AMP PEAK 49(XQ28) WILD-TYPE
  CLUS_1                    37                         132
  CLUS_2                    14                         101
  CLUS_3                    14                          74
D49V12, multiclass
        clus
vv       AMP PEAK 49(XQ28) CNV AMP PEAK 49(XQ28) WILD-TYPE
  CLUS_1                    18                          81
  CLUS_2                    19                         119
  CLUS_3                    25                          85
  CLUS_4                     3                          22

Clustering(50) Variable = Del Peak  1(1p36.11)
D50V1, multiclass
        clus
vv       DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                        1                             13
  CLUS_2                        5                             12
  CLUS_3                        0                             12
  CLUS_4                        0                             10
D50V2, multiclass
        clus
vv       DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                        1                             18
  CLUS_2                        0                             19
  CLUS_3                        5                             10
D50V3, multiclass
D50V4, multiclass
        clus
vv       DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                       48                             98
  CLUS_2                       15                             74
  CLUS_3                        7                            148
D50V5, multiclass
D50V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.11) CNV          7    7
  DEL PEAK  1(1P36.11) WILD-TYPE   66  114
        clus
vv       DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                        7                            114
  CLUS_2                        7                             66
D50V7, multiclass
        clus
vv       DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                       21                             28
  CLUS_2                        6                             30
  CLUS_3                        4                             29
D50V8, multiclass
        clus
vv       DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                       20                             26
  CLUS_2                        9                             27
  CLUS_3                        2                             34
D50V9, multiclass
D50V10, multiclass
        clus
vv       DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                        5                             22
  CLUS_2                        6                            216
  CLUS_3                       65                            181
D50V11, multiclass
        clus
vv       DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                       44                            125
  CLUS_2                        7                            108
  CLUS_3                       19                             69
D50V12, multiclass
        clus
vv       DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                       22                             77
  CLUS_2                        9                            129
  CLUS_3                       36                             74
  CLUS_4                        3                             22

Clustering(51) Variable = Del Peak  2(2p25.3)
D51V1, multiclass
[1] "Remove cluster labels:"  "DEL PEAK  2(2P25.3) CNV"
clus
      DEL PEAK  2(2P25.3) CNV DEL PEAK  2(2P25.3) WILD-TYPE 
                            1                            52 
                   TCGA-A5-A0G2                    TCGA-A5-A0G5 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GA                    TCGA-A5-A0GB 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GE                    TCGA-A5-A0GH 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GM                    TCGA-A5-A0GP 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GU                    TCGA-AP-A051 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AP-A052                    TCGA-AP-A053 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AP-A054                    TCGA-AP-A056 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05A                    TCGA-AP-A05D 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05H                    TCGA-AP-A05J 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05N                    TCGA-AP-A05P 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0L8                    TCGA-AP-A0LD 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LG                    TCGA-AP-A0LH 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LJ                    TCGA-AP-A0LN 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LT                    TCGA-AP-A0LV 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05S                    TCGA-AX-A05T 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05U                    TCGA-AX-A05W 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05Y                    TCGA-AX-A05Z 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AX-A060                    TCGA-AX-A062 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AX-A063                    TCGA-AX-A064 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AX-A06B                    TCGA-AX-A06F 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AX-A06J                    TCGA-AX-A0IW 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AX-A0J1                    TCGA-B5-A0JR 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-B5-A0JZ                    TCGA-B5-A0K0 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-B5-A0K1                    TCGA-B5-A0K4 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-BG-A0LW                    TCGA-BG-A0MI 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-BK-A0C9                    TCGA-BK-A0CC 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
D51V2, multiclass
[1] "Remove cluster labels:"  "DEL PEAK  2(2P25.3) CNV"
clus
      DEL PEAK  2(2P25.3) CNV DEL PEAK  2(2P25.3) WILD-TYPE 
                            1                            52 
                   TCGA-A5-A0G2                    TCGA-A5-A0G5 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GA                    TCGA-A5-A0GB 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GE                    TCGA-A5-A0GH 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GM                    TCGA-A5-A0GP 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GU                    TCGA-AP-A051 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AP-A052                    TCGA-AP-A053 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AP-A054                    TCGA-AP-A056 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05A                    TCGA-AP-A05D 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05H                    TCGA-AP-A05J 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05N                    TCGA-AP-A05P 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0L8                    TCGA-AP-A0LD 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LG                    TCGA-AP-A0LH 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LJ                    TCGA-AP-A0LN 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LT                    TCGA-AP-A0LV 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05S                    TCGA-AX-A05T 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05U                    TCGA-AX-A05W 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05Y                    TCGA-AX-A05Z 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AX-A060                    TCGA-AX-A062 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AX-A063                    TCGA-AX-A064 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AX-A06B                    TCGA-AX-A06F 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AX-A06J                    TCGA-AX-A0IW 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-AX-A0J1                    TCGA-B5-A0JR 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-B5-A0JZ                    TCGA-B5-A0K0 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-B5-A0K1                    TCGA-B5-A0K4 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-BG-A0LW                    TCGA-BG-A0MI 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
                   TCGA-BK-A0C9                    TCGA-BK-A0CC 
"DEL PEAK  2(2P25.3) WILD-TYPE" "DEL PEAK  2(2P25.3) WILD-TYPE" 
D51V3, multiclass
D51V4, multiclass
        clus
vv       DEL PEAK  2(2P25.3) CNV DEL PEAK  2(2P25.3) WILD-TYPE
  CLUS_1                      17                           129
  CLUS_2                       5                            84
  CLUS_3                       2                           153
D51V5, multiclass
D51V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(2P25.3) CNV          1    4
  DEL PEAK  2(2P25.3) WILD-TYPE   72  117
        clus
vv       DEL PEAK  2(2P25.3) CNV DEL PEAK  2(2P25.3) WILD-TYPE
  CLUS_1                       4                           117
  CLUS_2                       1                            72
D51V7, multiclass
        clus
vv       DEL PEAK  2(2P25.3) CNV DEL PEAK  2(2P25.3) WILD-TYPE
  CLUS_1                       6                            43
  CLUS_2                       0                            36
  CLUS_3                       3                            30
D51V8, multiclass
        clus
vv       DEL PEAK  2(2P25.3) CNV DEL PEAK  2(2P25.3) WILD-TYPE
  CLUS_1                       5                            41
  CLUS_2                       1                            35
  CLUS_3                       3                            33
D51V9, multiclass
D51V10, multiclass
        clus
vv       DEL PEAK  2(2P25.3) CNV DEL PEAK  2(2P25.3) WILD-TYPE
  CLUS_1                       1                            26
  CLUS_2                       4                           218
  CLUS_3                      20                           226
D51V11, multiclass
        clus
vv       DEL PEAK  2(2P25.3) CNV DEL PEAK  2(2P25.3) WILD-TYPE
  CLUS_1                      13                           156
  CLUS_2                       4                           111
  CLUS_3                       5                            83
D51V12, multiclass
        clus
vv       DEL PEAK  2(2P25.3) CNV DEL PEAK  2(2P25.3) WILD-TYPE
  CLUS_1                       8                            91
  CLUS_2                       4                           134
  CLUS_3                       9                           101
  CLUS_4                       1                            24

Clustering(52) Variable = Del Peak  3(2q22.1)
D52V1, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                       0                            14
  CLUS_2                       4                            13
  CLUS_3                       0                            12
  CLUS_4                       0                            10
D52V2, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                       0                            19
  CLUS_2                       0                            19
  CLUS_3                       4                            11
D52V3, multiclass
D52V4, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                      23                           123
  CLUS_2                      11                            78
  CLUS_3                       6                           149
D52V5, multiclass
D52V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q22.1) CNV          5    3
  DEL PEAK  3(2Q22.1) WILD-TYPE   68  118
        clus
vv       DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                       3                           118
  CLUS_2                       5                            68
D52V7, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                      14                            35
  CLUS_2                       2                            34
  CLUS_3                       5                            28
D52V8, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                      12                            34
  CLUS_2                       5                            31
  CLUS_3                       4                            32
D52V9, multiclass
D52V10, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                       2                            25
  CLUS_2                       6                           216
  CLUS_3                      36                           210
D52V11, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                      26                           143
  CLUS_2                       6                           109
  CLUS_3                       7                            81
D52V12, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                      11                            88
  CLUS_2                       7                           131
  CLUS_3                      19                            91
  CLUS_4                       2                            23

Clustering(53) Variable = Del Peak  4(2q37.3)
D53V1, multiclass
[1] "Remove cluster labels:"  "DEL PEAK  4(2Q37.3) CNV"
clus
      DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE 
                            1                            52 
                   TCGA-A5-A0G2                    TCGA-A5-A0G5 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GA                    TCGA-A5-A0GB 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GE                    TCGA-A5-A0GH 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GM                    TCGA-A5-A0GP 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GU                    TCGA-AP-A051 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A052                    TCGA-AP-A053 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A054                    TCGA-AP-A056 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05D                    TCGA-AP-A05H 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05J                    TCGA-AP-A05N 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05P                    TCGA-AP-A0L8 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0L9                    TCGA-AP-A0LD 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LG                    TCGA-AP-A0LH 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LJ                    TCGA-AP-A0LN 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LT                    TCGA-AP-A0LV 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05S                    TCGA-AX-A05T 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05U                    TCGA-AX-A05W 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05Y                    TCGA-AX-A05Z 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A060                    TCGA-AX-A062 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A063                    TCGA-AX-A064 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A06B                    TCGA-AX-A06F 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A06J                    TCGA-AX-A0IW 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A0J1                    TCGA-B5-A0JR 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-B5-A0JZ                    TCGA-B5-A0K0 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-B5-A0K1                    TCGA-B5-A0K4 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-BG-A0LW                    TCGA-BG-A0MI 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-BK-A0C9                    TCGA-BK-A0CC 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
D53V2, multiclass
[1] "Remove cluster labels:"  "DEL PEAK  4(2Q37.3) CNV"
clus
      DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE 
                            1                            52 
                   TCGA-A5-A0G2                    TCGA-A5-A0G5 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GA                    TCGA-A5-A0GB 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GE                    TCGA-A5-A0GH 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GM                    TCGA-A5-A0GP 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GU                    TCGA-AP-A051 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A052                    TCGA-AP-A053 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A054                    TCGA-AP-A056 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05D                    TCGA-AP-A05H 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05J                    TCGA-AP-A05N 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05P                    TCGA-AP-A0L8 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0L9                    TCGA-AP-A0LD 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LG                    TCGA-AP-A0LH 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LJ                    TCGA-AP-A0LN 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LT                    TCGA-AP-A0LV 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05S                    TCGA-AX-A05T 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05U                    TCGA-AX-A05W 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05Y                    TCGA-AX-A05Z 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A060                    TCGA-AX-A062 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A063                    TCGA-AX-A064 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A06B                    TCGA-AX-A06F 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A06J                    TCGA-AX-A0IW 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A0J1                    TCGA-B5-A0JR 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-B5-A0JZ                    TCGA-B5-A0K0 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-B5-A0K1                    TCGA-B5-A0K4 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-BG-A0LW                    TCGA-BG-A0MI 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-BK-A0C9                    TCGA-BK-A0CC 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
D53V3, multiclass
D53V4, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                      31                           115
  CLUS_2                       6                            83
  CLUS_3                       9                           146
D53V5, multiclass
D53V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2Q37.3) CNV          5    5
  DEL PEAK  4(2Q37.3) WILD-TYPE   68  116
        clus
vv       DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                       5                           116
  CLUS_2                       5                            68
D53V7, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                      15                            34
  CLUS_2                       3                            33
  CLUS_3                       5                            28
D53V8, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                      12                            34
  CLUS_2                       7                            29
  CLUS_3                       4                            32
D53V9, multiclass
D53V10, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                       3                            24
  CLUS_2                      10                           212
  CLUS_3                      36                           210
D53V11, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                      28                           141
  CLUS_2                       8                           107
  CLUS_3                       8                            80
D53V12, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                      12                            87
  CLUS_2                       9                           129
  CLUS_3                      20                            90
  CLUS_4                       3                            22

Clustering(54) Variable = Del Peak  5(3p14.2)
D54V1, multiclass
        clus
vv       DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                       1                            13
  CLUS_2                       5                            12
  CLUS_3                       0                            12
  CLUS_4                       0                            10
D54V2, multiclass
        clus
vv       DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                       1                            18
  CLUS_2                       0                            19
  CLUS_3                       5                            10
D54V3, multiclass
D54V4, multiclass
        clus
vv       DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                      42                           104
  CLUS_2                      14                            75
  CLUS_3                       5                           150
D54V5, multiclass
D54V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(3P14.2) CNV         11    6
  DEL PEAK  5(3P14.2) WILD-TYPE   62  115
        clus
vv       DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                       6                           115
  CLUS_2                      11                            62
D54V7, multiclass
        clus
vv       DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                      18                            31
  CLUS_2                       3                            33
  CLUS_3                       1                            32
D54V8, multiclass
        clus
vv       DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                      15                            31
  CLUS_2                       5                            31
  CLUS_3                       2                            34
D54V9, multiclass
D54V10, multiclass
        clus
vv       DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                       2                            25
  CLUS_2                       9                           213
  CLUS_3                      59                           187
D54V11, multiclass
        clus
vv       DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                      40                           129
  CLUS_2                       5                           110
  CLUS_3                      14                            74
D54V12, multiclass
        clus
vv       DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                      18                            81
  CLUS_2                       6                           132
  CLUS_3                      32                            78
  CLUS_4                       3                            22

Clustering(55) Variable = Del Peak  6(3q13.31)
D55V1, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) CNV DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                        1                             13
  CLUS_2                        3                             14
  CLUS_3                        0                             12
  CLUS_4                        0                             10
D55V2, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) CNV DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                        1                             18
  CLUS_2                        0                             19
  CLUS_3                        3                             12
D55V3, multiclass
D55V4, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) CNV DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                       16                            130
  CLUS_2                        5                             84
  CLUS_3                        5                            150
D55V5, multiclass
D55V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  6(3Q13.31) CNV          2    4
  DEL PEAK  6(3Q13.31) WILD-TYPE   71  117
        clus
vv       DEL PEAK  6(3Q13.31) CNV DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                        4                            117
  CLUS_2                        2                             71
D55V7, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) CNV DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                        9                             40
  CLUS_2                        1                             35
  CLUS_3                        5                             28
D55V8, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) CNV DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                        9                             37
  CLUS_2                        1                             35
  CLUS_3                        5                             31
D55V9, multiclass
D55V10, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) CNV DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                        1                             26
  CLUS_2                        4                            218
  CLUS_3                       24                            222
D55V11, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) CNV DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                       14                            155
  CLUS_2                        4                            111
  CLUS_3                        7                             81
D55V12, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) CNV DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                       10                             89
  CLUS_2                        4                            134
  CLUS_3                       10                            100
  CLUS_4                        1                             24

Clustering(56) Variable = Del Peak  7(4p16.3)
D56V1, multiclass
        clus
vv       DEL PEAK  7(4P16.3) CNV DEL PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                       1                            13
  CLUS_2                       6                            11
  CLUS_3                       0                            12
  CLUS_4                       0                            10
D56V2, multiclass
        clus
vv       DEL PEAK  7(4P16.3) CNV DEL PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                       1                            18
  CLUS_2                       0                            19
  CLUS_3                       6                             9
D56V3, multiclass
D56V4, multiclass
        clus
vv       DEL PEAK  7(4P16.3) CNV DEL PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                      54                            92
  CLUS_2                      15                            74
  CLUS_3                       8                           147
D56V5, multiclass
D56V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(4P16.3) CNV         11   11
  DEL PEAK  7(4P16.3) WILD-TYPE   62  110
        clus
vv       DEL PEAK  7(4P16.3) CNV DEL PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                      11                           110
  CLUS_2                      11                            62
D56V7, multiclass
        clus
vv       DEL PEAK  7(4P16.3) CNV DEL PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                      24                            25
  CLUS_2                       9                            27
  CLUS_3                       5                            28
D56V8, multiclass
        clus
vv       DEL PEAK  7(4P16.3) CNV DEL PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                      21                            25
  CLUS_2                      14                            22
  CLUS_3                       3                            33
D56V9, multiclass
D56V10, multiclass
        clus
vv       DEL PEAK  7(4P16.3) CNV DEL PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                       5                            22
  CLUS_2                      11                           211
  CLUS_3                      70                           176
D56V11, multiclass
        clus
vv       DEL PEAK  7(4P16.3) CNV DEL PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                      48                           121
  CLUS_2                       9                           106
  CLUS_3                      20                            68
D56V12, multiclass
        clus
vv       DEL PEAK  7(4P16.3) CNV DEL PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                      21                            78
  CLUS_2                      10                           128
  CLUS_3                      41                            69
  CLUS_4                       5                            20

Clustering(57) Variable = Del Peak  8(4p15.31)
D57V1, multiclass
        clus
vv       DEL PEAK  8(4P15.31) CNV DEL PEAK  8(4P15.31) WILD-TYPE
  CLUS_1                        1                             13
  CLUS_2                        6                             11
  CLUS_3                        0                             12
  CLUS_4                        0                             10
D57V2, multiclass
        clus
vv       DEL PEAK  8(4P15.31) CNV DEL PEAK  8(4P15.31) WILD-TYPE
  CLUS_1                        1                             18
  CLUS_2                        0                             19
  CLUS_3                        6                              9
D57V3, multiclass
D57V4, multiclass
        clus
vv       DEL PEAK  8(4P15.31) CNV DEL PEAK  8(4P15.31) WILD-TYPE
  CLUS_1                       57                             89
  CLUS_2                       17                             72
  CLUS_3                        7                            148
D57V5, multiclass
D57V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  8(4P15.31) CNV         10   11
  DEL PEAK  8(4P15.31) WILD-TYPE   63  110
        clus
vv       DEL PEAK  8(4P15.31) CNV DEL PEAK  8(4P15.31) WILD-TYPE
  CLUS_1                       11                            110
  CLUS_2                       10                             63
D57V7, multiclass
        clus
vv       DEL PEAK  8(4P15.31) CNV DEL PEAK  8(4P15.31) WILD-TYPE
  CLUS_1                       30                             19
  CLUS_2                        9                             27
  CLUS_3                        4                             29
D57V8, multiclass
        clus
vv       DEL PEAK  8(4P15.31) CNV DEL PEAK  8(4P15.31) WILD-TYPE
  CLUS_1                       27                             19
  CLUS_2                       14                             22
  CLUS_3                        2                             34
D57V9, multiclass
D57V10, multiclass
        clus
vv       DEL PEAK  8(4P15.31) CNV DEL PEAK  8(4P15.31) WILD-TYPE
  CLUS_1                        5                             22
  CLUS_2                       10                            212
  CLUS_3                       75                            171
D57V11, multiclass
        clus
vv       DEL PEAK  8(4P15.31) CNV DEL PEAK  8(4P15.31) WILD-TYPE
  CLUS_1                       53                            116
  CLUS_2                        8                            107
  CLUS_3                       20                             68
D57V12, multiclass
        clus
vv       DEL PEAK  8(4P15.31) CNV DEL PEAK  8(4P15.31) WILD-TYPE
  CLUS_1                       26                             73
  CLUS_2                        9                            129
  CLUS_3                       41                             69
  CLUS_4                        5                             20

Clustering(58) Variable = Del Peak  9(4q22.1)
D58V1, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) CNV DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                       1                            13
  CLUS_2                       7                            10
  CLUS_3                       0                            12
  CLUS_4                       0                            10
D58V2, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) CNV DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                       1                            18
  CLUS_2                       0                            19
  CLUS_3                       7                             8
D58V3, multiclass
D58V4, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) CNV DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                      63                            83
  CLUS_2                      18                            71
  CLUS_3                       5                           150
D58V5, multiclass
D58V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(4Q22.1) CNV         12   10
  DEL PEAK  9(4Q22.1) WILD-TYPE   61  111
        clus
vv       DEL PEAK  9(4Q22.1) CNV DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                      10                           111
  CLUS_2                      12                            61
D58V7, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) CNV DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                      26                            23
  CLUS_2                       8                            28
  CLUS_3                       7                            26
D58V8, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) CNV DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                      27                            19
  CLUS_2                      10                            26
  CLUS_3                       4                            32
D58V9, multiclass
D58V10, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) CNV DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                       5                            22
  CLUS_2                       8                           214
  CLUS_3                      84                           162
D58V11, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) CNV DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                      55                           114
  CLUS_2                       6                           109
  CLUS_3                      25                            63
D58V12, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) CNV DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                      33                            66
  CLUS_2                       7                           131
  CLUS_3                      41                            69
  CLUS_4                       5                            20

Clustering(59) Variable = Del Peak 10(4q34.3)
D59V1, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) CNV DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                       1                            13
  CLUS_2                       7                            10
  CLUS_3                       0                            12
  CLUS_4                       0                            10
D59V2, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) CNV DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                       1                            18
  CLUS_2                       0                            19
  CLUS_3                       7                             8
D59V3, multiclass
D59V4, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) CNV DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                      67                            79
  CLUS_2                      24                            65
  CLUS_3                      12                           143
D59V5, multiclass
D59V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(4Q34.3) CNV         12   15
  DEL PEAK 10(4Q34.3) WILD-TYPE   61  106
        clus
vv       DEL PEAK 10(4Q34.3) CNV DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                      15                           106
  CLUS_2                      12                            61
D59V7, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) CNV DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                      34                            15
  CLUS_2                       7                            29
  CLUS_3                       6                            27
D59V8, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) CNV DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                      31                            15
  CLUS_2                      11                            25
  CLUS_3                       5                            31
D59V9, multiclass
D59V10, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) CNV DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                       7                            20
  CLUS_2                      12                           210
  CLUS_3                      97                           149
D59V11, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) CNV DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                      64                           105
  CLUS_2                       9                           106
  CLUS_3                      29                            59
D59V12, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) CNV DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                      38                            61
  CLUS_2                      10                           128
  CLUS_3                      49                            61
  CLUS_4                       5                            20

Clustering(60) Variable = Del Peak 11(5q11.2)
D60V1, multiclass
        clus
vv       DEL PEAK 11(5Q11.2) CNV DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                       1                            13
  CLUS_2                       6                            11
  CLUS_3                       0                            12
  CLUS_4                       0                            10
D60V2, multiclass
        clus
vv       DEL PEAK 11(5Q11.2) CNV DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                       1                            18
  CLUS_2                       0                            19
  CLUS_3                       6                             9
D60V3, multiclass
D60V4, multiclass
        clus
vv       DEL PEAK 11(5Q11.2) CNV DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                      64                            82
  CLUS_2                      18                            71
  CLUS_3                       8                           147
D60V5, multiclass
D60V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(5Q11.2) CNV         14    8
  DEL PEAK 11(5Q11.2) WILD-TYPE   59  113
        clus
vv       DEL PEAK 11(5Q11.2) CNV DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                       8                           113
  CLUS_2                      14                            59
D60V7, multiclass
        clus
vv       DEL PEAK 11(5Q11.2) CNV DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                      31                            18
  CLUS_2                       7                            29
  CLUS_3                       7                            26
D60V8, multiclass
        clus
vv       DEL PEAK 11(5Q11.2) CNV DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                      28                            18
  CLUS_2                      10                            26
  CLUS_3                       7                            29
D60V9, multiclass
D60V10, multiclass
        clus
vv       DEL PEAK 11(5Q11.2) CNV DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                       5                            22
  CLUS_2                      14                           208
  CLUS_3                      84                           162
D60V11, multiclass
        clus
vv       DEL PEAK 11(5Q11.2) CNV DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                      60                           109
  CLUS_2                      11                           104
  CLUS_3                      18                            70
D60V12, multiclass
        clus
vv       DEL PEAK 11(5Q11.2) CNV DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                      28                            71
  CLUS_2                      12                           126
  CLUS_3                      44                            66
  CLUS_4                       5                            20

Clustering(61) Variable = Del Peak 12(6q26)
D61V1, multiclass
        clus
vv       DEL PEAK 12(6Q26) CNV DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                     1                          13
  CLUS_2                     3                          14
  CLUS_3                     0                          12
  CLUS_4                     0                          10
D61V2, multiclass
        clus
vv       DEL PEAK 12(6Q26) CNV DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                     1                          18
  CLUS_2                     0                          19
  CLUS_3                     3                          12
D61V3, multiclass
D61V4, multiclass
        clus
vv       DEL PEAK 12(6Q26) CNV DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                    28                         118
  CLUS_2                    10                          79
  CLUS_3                     1                         154
D61V5, multiclass
D61V6, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 12(6Q26) CNV          5    4
  DEL PEAK 12(6Q26) WILD-TYPE   68  117
        clus
vv       DEL PEAK 12(6Q26) CNV DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                     4                         117
  CLUS_2                     5                          68
D61V7, multiclass
        clus
vv       DEL PEAK 12(6Q26) CNV DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                    17                          32
  CLUS_2                     1                          35
  CLUS_3                     2                          31
D61V8, multiclass
        clus
vv       DEL PEAK 12(6Q26) CNV DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                    19                          27
  CLUS_2                     1                          35
  CLUS_3                     0                          36
D61V9, multiclass
D61V10, multiclass
        clus
vv       DEL PEAK 12(6Q26) CNV DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                     1                          26
  CLUS_2                     3                         219
  CLUS_3                    40                         206
D61V11, multiclass
        clus
vv       DEL PEAK 12(6Q26) CNV DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                    25                         144
  CLUS_2                     2                         113
  CLUS_3                    12                          76
D61V12, multiclass
        clus
vv       DEL PEAK 12(6Q26) CNV DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                    16                          83
  CLUS_2                     2                         136
  CLUS_3                    18                          92
  CLUS_4                     3                          22

Clustering(62) Variable = Del Peak 13(7p22.3)
D62V1, multiclass
        clus
vv       DEL PEAK 13(7P22.3) CNV DEL PEAK 13(7P22.3) WILD-TYPE
  CLUS_1                       0                            14
  CLUS_2                       7                            10
  CLUS_3                       0                            12
  CLUS_4                       0                            10
D62V2, multiclass
        clus
vv       DEL PEAK 13(7P22.3) CNV DEL PEAK 13(7P22.3) WILD-TYPE
  CLUS_1                       0                            19
  CLUS_2                       0                            19
  CLUS_3                       7                             8
D62V3, multiclass
D62V4, multiclass
        clus
vv       DEL PEAK 13(7P22.3) CNV DEL PEAK 13(7P22.3) WILD-TYPE
  CLUS_1                      43                           103
  CLUS_2                      13                            76
  CLUS_3                       5                           150
D62V5, multiclass
D62V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 13(7P22.3) CNV          9    6
  DEL PEAK 13(7P22.3) WILD-TYPE   64  115
        clus
vv       DEL PEAK 13(7P22.3) CNV DEL PEAK 13(7P22.3) WILD-TYPE
  CLUS_1                       6                           115
  CLUS_2                       9                            64
D62V7, multiclass
        clus
vv       DEL PEAK 13(7P22.3) CNV DEL PEAK 13(7P22.3) WILD-TYPE
  CLUS_1                      16                            33
  CLUS_2                       4                            32
  CLUS_3                       3                            30
D62V8, multiclass
        clus
vv       DEL PEAK 13(7P22.3) CNV DEL PEAK 13(7P22.3) WILD-TYPE
  CLUS_1                      14                            32
  CLUS_2                       6                            30
  CLUS_3                       3                            33
D62V9, multiclass
D62V10, multiclass
        clus
vv       DEL PEAK 13(7P22.3) CNV DEL PEAK 13(7P22.3) WILD-TYPE
  CLUS_1                       3                            24
  CLUS_2                       8                           214
  CLUS_3                      58                           188
D62V11, multiclass
        clus
vv       DEL PEAK 13(7P22.3) CNV DEL PEAK 13(7P22.3) WILD-TYPE
  CLUS_1                      37                           132
  CLUS_2                       5                           110
  CLUS_3                      16                            72
D62V12, multiclass
        clus
vv       DEL PEAK 13(7P22.3) CNV DEL PEAK 13(7P22.3) WILD-TYPE
  CLUS_1                      20                            79
  CLUS_2                       6                           132
  CLUS_3                      31                            79
  CLUS_4                       1                            24

Clustering(63) Variable = Del Peak 14(7q11.22)
D63V1, multiclass
[1] "Remove cluster labels:"   "DEL PEAK 14(7Q11.22) CNV"
clus
      DEL PEAK 14(7Q11.22) CNV DEL PEAK 14(7Q11.22) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05J                     TCGA-AP-A05N 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05P                     TCGA-AP-A0L8 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0L9                     TCGA-AP-A0LD 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LG                     TCGA-AP-A0LH 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LJ                     TCGA-AP-A0LN 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LT                     TCGA-AP-A0LV 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05S                     TCGA-AX-A05T 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05U                     TCGA-AX-A05W 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05Y                     TCGA-AX-A05Z 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A060                     TCGA-AX-A062 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A063                     TCGA-AX-A064 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A06B                     TCGA-AX-A06F 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A06J                     TCGA-AX-A0IW 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A0J1                     TCGA-B5-A0JR 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-B5-A0JZ                     TCGA-B5-A0K0 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-B5-A0K1                     TCGA-B5-A0K4 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-BG-A0LW                     TCGA-BG-A0MI 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-BK-A0C9 
"DEL PEAK 14(7Q11.22) WILD-TYPE" 
D63V2, multiclass
[1] "Remove cluster labels:"   "DEL PEAK 14(7Q11.22) CNV"
clus
      DEL PEAK 14(7Q11.22) CNV DEL PEAK 14(7Q11.22) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05J                     TCGA-AP-A05N 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05P                     TCGA-AP-A0L8 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0L9                     TCGA-AP-A0LD 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LG                     TCGA-AP-A0LH 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LJ                     TCGA-AP-A0LN 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LT                     TCGA-AP-A0LV 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05S                     TCGA-AX-A05T 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05U                     TCGA-AX-A05W 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05Y                     TCGA-AX-A05Z 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A060                     TCGA-AX-A062 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A063                     TCGA-AX-A064 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A06B                     TCGA-AX-A06F 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A06J                     TCGA-AX-A0IW 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A0J1                     TCGA-B5-A0JR 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-B5-A0JZ                     TCGA-B5-A0K0 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-B5-A0K1                     TCGA-B5-A0K4 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-BG-A0LW                     TCGA-BG-A0MI 
"DEL PEAK 14(7Q11.22) WILD-TYPE" "DEL PEAK 14(7Q11.22) WILD-TYPE" 
                    TCGA-BK-A0C9 
"DEL PEAK 14(7Q11.22) WILD-TYPE" 
D63V3, multiclass
D63V4, multiclass
        clus
vv       DEL PEAK 14(7Q11.22) CNV DEL PEAK 14(7Q11.22) WILD-TYPE
  CLUS_1                       26                            120
  CLUS_2                       10                             79
  CLUS_3                        2                            153
D63V5, multiclass
D63V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 14(7Q11.22) CNV          8    2
  DEL PEAK 14(7Q11.22) WILD-TYPE   65  119
        clus
vv       DEL PEAK 14(7Q11.22) CNV DEL PEAK 14(7Q11.22) WILD-TYPE
  CLUS_1                        2                            119
  CLUS_2                        8                             65
D63V7, multiclass
        clus
vv       DEL PEAK 14(7Q11.22) CNV DEL PEAK 14(7Q11.22) WILD-TYPE
  CLUS_1                       11                             38
  CLUS_2                        3                             33
  CLUS_3                        2                             31
D63V8, multiclass
        clus
vv       DEL PEAK 14(7Q11.22) CNV DEL PEAK 14(7Q11.22) WILD-TYPE
  CLUS_1                       10                             36
  CLUS_2                        4                             32
  CLUS_3                        2                             34
D63V9, multiclass
D63V10, multiclass
        clus
vv       DEL PEAK 14(7Q11.22) CNV DEL PEAK 14(7Q11.22) WILD-TYPE
  CLUS_1                        3                             24
  CLUS_2                        5                            217
  CLUS_3                       32                            214
D63V11, multiclass
        clus
vv       DEL PEAK 14(7Q11.22) CNV DEL PEAK 14(7Q11.22) WILD-TYPE
  CLUS_1                       25                            144
  CLUS_2                        3                            112
  CLUS_3                        8                             80
D63V12, multiclass
        clus
vv       DEL PEAK 14(7Q11.22) CNV DEL PEAK 14(7Q11.22) WILD-TYPE
  CLUS_1                       12                             87
  CLUS_2                        4                            134
  CLUS_3                       20                             90
  CLUS_4                        0                             25

Clustering(64) Variable = Del Peak 15(7q31.1)
D64V1, multiclass
        clus
vv       DEL PEAK 15(7Q31.1) CNV DEL PEAK 15(7Q31.1) WILD-TYPE
  CLUS_1                       0                            14
  CLUS_2                       3                            14
  CLUS_3                       0                            12
  CLUS_4                       0                            10
D64V2, multiclass
        clus
vv       DEL PEAK 15(7Q31.1) CNV DEL PEAK 15(7Q31.1) WILD-TYPE
  CLUS_1                       0                            19
  CLUS_2                       0                            19
  CLUS_3                       3                            12
D64V3, multiclass
D64V4, multiclass
        clus
vv       DEL PEAK 15(7Q31.1) CNV DEL PEAK 15(7Q31.1) WILD-TYPE
  CLUS_1                      33                           113
  CLUS_2                      11                            78
  CLUS_3                       2                           153
D64V5, multiclass
D64V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(7Q31.1) CNV          9    4
  DEL PEAK 15(7Q31.1) WILD-TYPE   64  117
        clus
vv       DEL PEAK 15(7Q31.1) CNV DEL PEAK 15(7Q31.1) WILD-TYPE
  CLUS_1                       4                           117
  CLUS_2                       9                            64
D64V7, multiclass
        clus
vv       DEL PEAK 15(7Q31.1) CNV DEL PEAK 15(7Q31.1) WILD-TYPE
  CLUS_1                      14                            35
  CLUS_2                       2                            34
  CLUS_3                       2                            31
D64V8, multiclass
        clus
vv       DEL PEAK 15(7Q31.1) CNV DEL PEAK 15(7Q31.1) WILD-TYPE
  CLUS_1                      12                            34
  CLUS_2                       5                            31
  CLUS_3                       1                            35
D64V9, multiclass
D64V10, multiclass
        clus
vv       DEL PEAK 15(7Q31.1) CNV DEL PEAK 15(7Q31.1) WILD-TYPE
  CLUS_1                       2                            25
  CLUS_2                       5                           217
  CLUS_3                      43                           203
D64V11, multiclass
        clus
vv       DEL PEAK 15(7Q31.1) CNV DEL PEAK 15(7Q31.1) WILD-TYPE
  CLUS_1                      29                           140
  CLUS_2                       3                           112
  CLUS_3                      11                            77
D64V12, multiclass
        clus
vv       DEL PEAK 15(7Q31.1) CNV DEL PEAK 15(7Q31.1) WILD-TYPE
  CLUS_1                      15                            84
  CLUS_2                       4                           134
  CLUS_3                      24                            86
  CLUS_4                       0                            25

Clustering(65) Variable = Del Peak 16(7q36.1)
D65V1, multiclass
        clus
vv       DEL PEAK 16(7Q36.1) CNV DEL PEAK 16(7Q36.1) WILD-TYPE
  CLUS_1                       1                            13
  CLUS_2                       4                            13
  CLUS_3                       1                            11
  CLUS_4                       0                            10
D65V2, multiclass
        clus
vv       DEL PEAK 16(7Q36.1) CNV DEL PEAK 16(7Q36.1) WILD-TYPE
  CLUS_1                       2                            17
  CLUS_2                       0                            19
  CLUS_3                       4                            11
D65V3, multiclass
D65V4, multiclass
        clus
vv       DEL PEAK 16(7Q36.1) CNV DEL PEAK 16(7Q36.1) WILD-TYPE
  CLUS_1                      38                           108
  CLUS_2                      13                            76
  CLUS_3                       1                           154
D65V5, multiclass
D65V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 16(7Q36.1) CNV         12    4
  DEL PEAK 16(7Q36.1) WILD-TYPE   61  117
        clus
vv       DEL PEAK 16(7Q36.1) CNV DEL PEAK 16(7Q36.1) WILD-TYPE
  CLUS_1                       4                           117
  CLUS_2                      12                            61
D65V7, multiclass
        clus
vv       DEL PEAK 16(7Q36.1) CNV DEL PEAK 16(7Q36.1) WILD-TYPE
  CLUS_1                      14                            35
  CLUS_2                       2                            34
  CLUS_3                       2                            31
D65V8, multiclass
        clus
vv       DEL PEAK 16(7Q36.1) CNV DEL PEAK 16(7Q36.1) WILD-TYPE
  CLUS_1                      13                            33
  CLUS_2                       4                            32
  CLUS_3                       1                            35
D65V9, multiclass
D65V10, multiclass
        clus
vv       DEL PEAK 16(7Q36.1) CNV DEL PEAK 16(7Q36.1) WILD-TYPE
  CLUS_1                       1                            26
  CLUS_2                       5                           217
  CLUS_3                      54                           192
D65V11, multiclass
        clus
vv       DEL PEAK 16(7Q36.1) CNV DEL PEAK 16(7Q36.1) WILD-TYPE
  CLUS_1                      34                           135
  CLUS_2                       3                           112
  CLUS_3                      12                            76
D65V12, multiclass
        clus
vv       DEL PEAK 16(7Q36.1) CNV DEL PEAK 16(7Q36.1) WILD-TYPE
  CLUS_1                      16                            83
  CLUS_2                       3                           135
  CLUS_3                      30                            80
  CLUS_4                       0                            25

Clustering(66) Variable = Del Peak 17(8p23.2)
D66V1, multiclass
        clus
vv       DEL PEAK 17(8P23.2) CNV DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                       0                            14
  CLUS_2                       6                            11
  CLUS_3                       0                            12
  CLUS_4                       0                            10
D66V2, multiclass
        clus
vv       DEL PEAK 17(8P23.2) CNV DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                       0                            19
  CLUS_2                       0                            19
  CLUS_3                       6                             9
D66V3, multiclass
D66V4, multiclass
        clus
vv       DEL PEAK 17(8P23.2) CNV DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                      69                            77
  CLUS_2                      20                            69
  CLUS_3                       4                           151
D66V5, multiclass
D66V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 17(8P23.2) CNV         11   13
  DEL PEAK 17(8P23.2) WILD-TYPE   62  108
        clus
vv       DEL PEAK 17(8P23.2) CNV DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                      13                           108
  CLUS_2                      11                            62
D66V7, multiclass
        clus
vv       DEL PEAK 17(8P23.2) CNV DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                      29                            20
  CLUS_2                       8                            28
  CLUS_3                       4                            29
D66V8, multiclass
        clus
vv       DEL PEAK 17(8P23.2) CNV DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                      27                            19
  CLUS_2                      12                            24
  CLUS_3                       2                            34
D66V9, multiclass
D66V10, multiclass
        clus
vv       DEL PEAK 17(8P23.2) CNV DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                       5                            22
  CLUS_2                       8                           214
  CLUS_3                      91                           155
D66V11, multiclass
        clus
vv       DEL PEAK 17(8P23.2) CNV DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                      62                           107
  CLUS_2                       4                           111
  CLUS_3                      22                            66
D66V12, multiclass
        clus
vv       DEL PEAK 17(8P23.2) CNV DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                      31                            68
  CLUS_2                       6                           132
  CLUS_3                      49                            61
  CLUS_4                       2                            23

Clustering(67) Variable = Del Peak 18(8p21.2)
D67V1, multiclass
        clus
vv       DEL PEAK 18(8P21.2) CNV DEL PEAK 18(8P21.2) WILD-TYPE
  CLUS_1                       0                            14
  CLUS_2                       6                            11
  CLUS_3                       0                            12
  CLUS_4                       0                            10
D67V2, multiclass
        clus
vv       DEL PEAK 18(8P21.2) CNV DEL PEAK 18(8P21.2) WILD-TYPE
  CLUS_1                       0                            19
  CLUS_2                       0                            19
  CLUS_3                       6                             9
D67V3, multiclass
D67V4, multiclass
        clus
vv       DEL PEAK 18(8P21.2) CNV DEL PEAK 18(8P21.2) WILD-TYPE
  CLUS_1                      73                            73
  CLUS_2                      18                            71
  CLUS_3                       1                           154
D67V5, multiclass
D67V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 18(8P21.2) CNV         12   11
  DEL PEAK 18(8P21.2) WILD-TYPE   61  110
        clus
vv       DEL PEAK 18(8P21.2) CNV DEL PEAK 18(8P21.2) WILD-TYPE
  CLUS_1                      11                           110
  CLUS_2                      12                            61
D67V7, multiclass
        clus
vv       DEL PEAK 18(8P21.2) CNV DEL PEAK 18(8P21.2) WILD-TYPE
  CLUS_1                      30                            19
  CLUS_2                       8                            28
  CLUS_3                       3                            30
D67V8, multiclass
        clus
vv       DEL PEAK 18(8P21.2) CNV DEL PEAK 18(8P21.2) WILD-TYPE
  CLUS_1                      29                            17
  CLUS_2                      11                            25
  CLUS_3                       1                            35
D67V9, multiclass
D67V10, multiclass
        clus
vv       DEL PEAK 18(8P21.2) CNV DEL PEAK 18(8P21.2) WILD-TYPE
  CLUS_1                       3                            24
  CLUS_2                       5                           217
  CLUS_3                      95                           151
D67V11, multiclass
        clus
vv       DEL PEAK 18(8P21.2) CNV DEL PEAK 18(8P21.2) WILD-TYPE
  CLUS_1                      64                           105
  CLUS_2                       1                           114
  CLUS_3                      23                            65
D67V12, multiclass
        clus
vv       DEL PEAK 18(8P21.2) CNV DEL PEAK 18(8P21.2) WILD-TYPE
  CLUS_1                      32                            67
  CLUS_2                       3                           135
  CLUS_3                      51                            59
  CLUS_4                       2                            23

Clustering(68) Variable = Del Peak 19(9p23)
D68V1, multiclass
        clus
vv       DEL PEAK 19(9P23) CNV DEL PEAK 19(9P23) WILD-TYPE
  CLUS_1                     1                          13
  CLUS_2                     3                          14
  CLUS_3                     0                          12
  CLUS_4                     0                          10
D68V2, multiclass
        clus
vv       DEL PEAK 19(9P23) CNV DEL PEAK 19(9P23) WILD-TYPE
  CLUS_1                     1                          18
  CLUS_2                     0                          19
  CLUS_3                     3                          12
D68V3, multiclass
D68V4, multiclass
        clus
vv       DEL PEAK 19(9P23) CNV DEL PEAK 19(9P23) WILD-TYPE
  CLUS_1                    33                         113
  CLUS_2                    19                          70
  CLUS_3                     7                         148
D68V5, multiclass
D68V6, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 19(9P23) CNV          8    8
  DEL PEAK 19(9P23) WILD-TYPE   65  113
        clus
vv       DEL PEAK 19(9P23) CNV DEL PEAK 19(9P23) WILD-TYPE
  CLUS_1                     8                         113
  CLUS_2                     8                          65
D68V7, multiclass
        clus
vv       DEL PEAK 19(9P23) CNV DEL PEAK 19(9P23) WILD-TYPE
  CLUS_1                    17                          32
  CLUS_2                     6                          30
  CLUS_3                     8                          25
D68V8, multiclass
        clus
vv       DEL PEAK 19(9P23) CNV DEL PEAK 19(9P23) WILD-TYPE
  CLUS_1                    13                          33
  CLUS_2                    10                          26
  CLUS_3                     8                          28
D68V9, multiclass
D68V10, multiclass
        clus
vv       DEL PEAK 19(9P23) CNV DEL PEAK 19(9P23) WILD-TYPE
  CLUS_1                     4                          23
  CLUS_2                    13                         209
  CLUS_3                    50                         196
D68V11, multiclass
        clus
vv       DEL PEAK 19(9P23) CNV DEL PEAK 19(9P23) WILD-TYPE
  CLUS_1                    34                         135
  CLUS_2                    11                         104
  CLUS_3                    13                          75
D68V12, multiclass
        clus
vv       DEL PEAK 19(9P23) CNV DEL PEAK 19(9P23) WILD-TYPE
  CLUS_1                    16                          83
  CLUS_2                    12                         126
  CLUS_3                    27                          83
  CLUS_4                     3                          22

Clustering(69) Variable = Del Peak 20(9q21.2)
D69V1, multiclass
        clus
vv       DEL PEAK 20(9Q21.2) CNV DEL PEAK 20(9Q21.2) WILD-TYPE
  CLUS_1                       0                            14
  CLUS_2                       9                             8
  CLUS_3                       0                            12
  CLUS_4                       0                            10
D69V2, multiclass
        clus
vv       DEL PEAK 20(9Q21.2) CNV DEL PEAK 20(9Q21.2) WILD-TYPE
  CLUS_1                       0                            19
  CLUS_2                       0                            19
  CLUS_3                       9                             6
D69V3, multiclass
D69V4, multiclass
        clus
vv       DEL PEAK 20(9Q21.2) CNV DEL PEAK 20(9Q21.2) WILD-TYPE
  CLUS_1                      63                            83
  CLUS_2                      24                            65
  CLUS_3                      15                           140
D69V5, multiclass
D69V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 20(9Q21.2) CNV         14   14
  DEL PEAK 20(9Q21.2) WILD-TYPE   59  107
        clus
vv       DEL PEAK 20(9Q21.2) CNV DEL PEAK 20(9Q21.2) WILD-TYPE
  CLUS_1                      14                           107
  CLUS_2                      14                            59
D69V7, multiclass
        clus
vv       DEL PEAK 20(9Q21.2) CNV DEL PEAK 20(9Q21.2) WILD-TYPE
  CLUS_1                      29                            20
  CLUS_2                       7                            29
  CLUS_3                      11                            22
D69V8, multiclass
        clus
vv       DEL PEAK 20(9Q21.2) CNV DEL PEAK 20(9Q21.2) WILD-TYPE
  CLUS_1                      26                            20
  CLUS_2                      11                            25
  CLUS_3                      10                            26
D69V9, multiclass
D69V10, multiclass
        clus
vv       DEL PEAK 20(9Q21.2) CNV DEL PEAK 20(9Q21.2) WILD-TYPE
  CLUS_1                       7                            20
  CLUS_2                      20                           202
  CLUS_3                      88                           158
D69V11, multiclass
        clus
vv       DEL PEAK 20(9Q21.2) CNV DEL PEAK 20(9Q21.2) WILD-TYPE
  CLUS_1                      57                           112
  CLUS_2                      17                            98
  CLUS_3                      26                            62
D69V12, multiclass
        clus
vv       DEL PEAK 20(9Q21.2) CNV DEL PEAK 20(9Q21.2) WILD-TYPE
  CLUS_1                      31                            68
  CLUS_2                      21                           117
  CLUS_3                      45                            65
  CLUS_4                       3                            22

Clustering(70) Variable = Del Peak 21(9q34.11)
D70V1, multiclass
        clus
vv       DEL PEAK 21(9Q34.11) CNV DEL PEAK 21(9Q34.11) WILD-TYPE
  CLUS_1                        0                             14
  CLUS_2                        9                              8
  CLUS_3                        0                             12
  CLUS_4                        0                             10
D70V2, multiclass
        clus
vv       DEL PEAK 21(9Q34.11) CNV DEL PEAK 21(9Q34.11) WILD-TYPE
  CLUS_1                        0                             19
  CLUS_2                        0                             19
  CLUS_3                        9                              6
D70V3, multiclass
D70V4, multiclass
        clus
vv       DEL PEAK 21(9Q34.11) CNV DEL PEAK 21(9Q34.11) WILD-TYPE
  CLUS_1                       65                             81
  CLUS_2                       26                             63
  CLUS_3                       17                            138
D70V5, multiclass
D70V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(9Q34.11) CNV         18   15
  DEL PEAK 21(9Q34.11) WILD-TYPE   55  106
        clus
vv       DEL PEAK 21(9Q34.11) CNV DEL PEAK 21(9Q34.11) WILD-TYPE
  CLUS_1                       15                            106
  CLUS_2                       18                             55
D70V7, multiclass
        clus
vv       DEL PEAK 21(9Q34.11) CNV DEL PEAK 21(9Q34.11) WILD-TYPE
  CLUS_1                       28                             21
  CLUS_2                        7                             29
  CLUS_3                       11                             22
D70V8, multiclass
        clus
vv       DEL PEAK 21(9Q34.11) CNV DEL PEAK 21(9Q34.11) WILD-TYPE
  CLUS_1                       25                             21
  CLUS_2                       11                             25
  CLUS_3                       10                             26
D70V9, multiclass
D70V10, multiclass
        clus
vv       DEL PEAK 21(9Q34.11) CNV DEL PEAK 21(9Q34.11) WILD-TYPE
  CLUS_1                        8                             19
  CLUS_2                       22                            200
  CLUS_3                       92                            154
D70V11, multiclass
        clus
vv       DEL PEAK 21(9Q34.11) CNV DEL PEAK 21(9Q34.11) WILD-TYPE
  CLUS_1                       64                            105
  CLUS_2                       17                             98
  CLUS_3                       24                             64
D70V12, multiclass
        clus
vv       DEL PEAK 21(9Q34.11) CNV DEL PEAK 21(9Q34.11) WILD-TYPE
  CLUS_1                       27                             72
  CLUS_2                       21                            117
  CLUS_3                       52                             58
  CLUS_4                        5                             20

Clustering(71) Variable = Del Peak 22(10q23.31)
D71V1, multiclass
        clus
vv       DEL PEAK 22(10Q23.31) CNV DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                         0                              14
  CLUS_2                         3                              14
  CLUS_3                         0                              12
  CLUS_4                         0                              10
D71V2, multiclass
        clus
vv       DEL PEAK 22(10Q23.31) CNV DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                         0                              19
  CLUS_2                         0                              19
  CLUS_3                         3                              12
D71V3, multiclass
D71V4, multiclass
        clus
vv       DEL PEAK 22(10Q23.31) CNV DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                        40                             106
  CLUS_2                        16                              73
  CLUS_3                         7                             148
D71V5, multiclass
D71V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 22(10Q23.31) CNV          7   10
  DEL PEAK 22(10Q23.31) WILD-TYPE   66  111
        clus
vv       DEL PEAK 22(10Q23.31) CNV DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                        10                             111
  CLUS_2                         7                              66
D71V7, multiclass
        clus
vv       DEL PEAK 22(10Q23.31) CNV DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                        25                              24
  CLUS_2                         3                              33
  CLUS_3                         5                              28
D71V8, multiclass
        clus
vv       DEL PEAK 22(10Q23.31) CNV DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                        26                              20
  CLUS_2                         3                              33
  CLUS_3                         4                              32
D71V9, multiclass
D71V10, multiclass
        clus
vv       DEL PEAK 22(10Q23.31) CNV DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                         2                              25
  CLUS_2                        11                             211
  CLUS_3                        58                             188
D71V11, multiclass
        clus
vv       DEL PEAK 22(10Q23.31) CNV DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                        41                             128
  CLUS_2                         7                             108
  CLUS_3                        14                              74
D71V12, multiclass
        clus
vv       DEL PEAK 22(10Q23.31) CNV DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                        20                              79
  CLUS_2                         8                             130
  CLUS_3                        32                              78
  CLUS_4                         2                              23

Clustering(72) Variable = Del Peak 23(11p15.5)
D72V1, multiclass
        clus
vv       DEL PEAK 23(11P15.5) CNV DEL PEAK 23(11P15.5) WILD-TYPE
  CLUS_1                        1                             13
  CLUS_2                        3                             14
  CLUS_3                        0                             12
  CLUS_4                        0                             10
D72V2, multiclass
        clus
vv       DEL PEAK 23(11P15.5) CNV DEL PEAK 23(11P15.5) WILD-TYPE
  CLUS_1                        1                             18
  CLUS_2                        0                             19
  CLUS_3                        3                             12
D72V3, multiclass
D72V4, multiclass
        clus
vv       DEL PEAK 23(11P15.5) CNV DEL PEAK 23(11P15.5) WILD-TYPE
  CLUS_1                       58                             88
  CLUS_2                       20                             69
  CLUS_3                        7                            148
D72V5, multiclass
D72V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(11P15.5) CNV          8   10
  DEL PEAK 23(11P15.5) WILD-TYPE   65  111
        clus
vv       DEL PEAK 23(11P15.5) CNV DEL PEAK 23(11P15.5) WILD-TYPE
  CLUS_1                       10                            111
  CLUS_2                        8                             65
D72V7, multiclass
        clus
vv       DEL PEAK 23(11P15.5) CNV DEL PEAK 23(11P15.5) WILD-TYPE
  CLUS_1                       27                             22
  CLUS_2                        7                             29
  CLUS_3                        8                             25
D72V8, multiclass
        clus
vv       DEL PEAK 23(11P15.5) CNV DEL PEAK 23(11P15.5) WILD-TYPE
  CLUS_1                       23                             23
  CLUS_2                       11                             25
  CLUS_3                        8                             28
D72V9, multiclass
D72V10, multiclass
        clus
vv       DEL PEAK 23(11P15.5) CNV DEL PEAK 23(11P15.5) WILD-TYPE
  CLUS_1                        3                             24
  CLUS_2                       16                            206
  CLUS_3                       73                            173
D72V11, multiclass
        clus
vv       DEL PEAK 23(11P15.5) CNV DEL PEAK 23(11P15.5) WILD-TYPE
  CLUS_1                       58                            111
  CLUS_2                       12                            103
  CLUS_3                       15                             73
D72V12, multiclass
        clus
vv       DEL PEAK 23(11P15.5) CNV DEL PEAK 23(11P15.5) WILD-TYPE
  CLUS_1                       22                             77
  CLUS_2                       13                            125
  CLUS_3                       48                             62
  CLUS_4                        2                             23

Clustering(73) Variable = Del Peak 24(11q14.1)
D73V1, multiclass
[1] "Remove cluster labels:"   "DEL PEAK 24(11Q14.1) CNV"
clus
      DEL PEAK 24(11Q14.1) CNV DEL PEAK 24(11Q14.1) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05H 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05J                     TCGA-AP-A05N 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05P                     TCGA-AP-A0L8 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0L9                     TCGA-AP-A0LD 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LG                     TCGA-AP-A0LH 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LJ                     TCGA-AP-A0LN 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LT                     TCGA-AP-A0LV 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05S                     TCGA-AX-A05T 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05U                     TCGA-AX-A05W 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05Y                     TCGA-AX-A05Z 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A060                     TCGA-AX-A062 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A063                     TCGA-AX-A064 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A06B                     TCGA-AX-A06F 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A06J                     TCGA-AX-A0IW 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A0J1                     TCGA-B5-A0JR 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0JZ                     TCGA-B5-A0K0 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0K1                     TCGA-B5-A0K4 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-BG-A0LW                     TCGA-BG-A0MI 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-BK-A0C9 
"DEL PEAK 24(11Q14.1) WILD-TYPE" 
D73V2, multiclass
[1] "Remove cluster labels:"   "DEL PEAK 24(11Q14.1) CNV"
clus
      DEL PEAK 24(11Q14.1) CNV DEL PEAK 24(11Q14.1) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05H 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05J                     TCGA-AP-A05N 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05P                     TCGA-AP-A0L8 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0L9                     TCGA-AP-A0LD 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LG                     TCGA-AP-A0LH 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LJ                     TCGA-AP-A0LN 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LT                     TCGA-AP-A0LV 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05S                     TCGA-AX-A05T 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05U                     TCGA-AX-A05W 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05Y                     TCGA-AX-A05Z 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A060                     TCGA-AX-A062 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A063                     TCGA-AX-A064 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A06B                     TCGA-AX-A06F 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A06J                     TCGA-AX-A0IW 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A0J1                     TCGA-B5-A0JR 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0JZ                     TCGA-B5-A0K0 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0K1                     TCGA-B5-A0K4 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-BG-A0LW                     TCGA-BG-A0MI 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-BK-A0C9 
"DEL PEAK 24(11Q14.1) WILD-TYPE" 
D73V3, multiclass
D73V4, multiclass
        clus
vv       DEL PEAK 24(11Q14.1) CNV DEL PEAK 24(11Q14.1) WILD-TYPE
  CLUS_1                       42                            104
  CLUS_2                       13                             76
  CLUS_3                        4                            151
D73V5, multiclass
D73V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(11Q14.1) CNV          7    7
  DEL PEAK 24(11Q14.1) WILD-TYPE   66  114
        clus
vv       DEL PEAK 24(11Q14.1) CNV DEL PEAK 24(11Q14.1) WILD-TYPE
  CLUS_1                        7                            114
  CLUS_2                        7                             66
D73V7, multiclass
        clus
vv       DEL PEAK 24(11Q14.1) CNV DEL PEAK 24(11Q14.1) WILD-TYPE
  CLUS_1                       18                             31
  CLUS_2                        5                             31
  CLUS_3                        3                             30
D73V8, multiclass
        clus
vv       DEL PEAK 24(11Q14.1) CNV DEL PEAK 24(11Q14.1) WILD-TYPE
  CLUS_1                       13                             33
  CLUS_2                       10                             26
  CLUS_3                        3                             33
D73V9, multiclass
D73V10, multiclass
        clus
vv       DEL PEAK 24(11Q14.1) CNV DEL PEAK 24(11Q14.1) WILD-TYPE
  CLUS_1                        1                             26
  CLUS_2                        8                            214
  CLUS_3                       54                            192
D73V11, multiclass
        clus
vv       DEL PEAK 24(11Q14.1) CNV DEL PEAK 24(11Q14.1) WILD-TYPE
  CLUS_1                       40                            129
  CLUS_2                        8                            107
  CLUS_3                       11                             77
D73V12, multiclass
        clus
vv       DEL PEAK 24(11Q14.1) CNV DEL PEAK 24(11Q14.1) WILD-TYPE
  CLUS_1                       13                             86
  CLUS_2                        8                            130
  CLUS_3                       37                             73
  CLUS_4                        1                             24

Clustering(74) Variable = Del Peak 25(11q25)
D74V1, multiclass
[1] "Remove cluster labels:" "DEL PEAK 25(11Q25) CNV"
clus
      DEL PEAK 25(11Q25) CNV DEL PEAK 25(11Q25) WILD-TYPE 
                           2                           51 
                  TCGA-A5-A0G2                   TCGA-A5-A0G5 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GA                   TCGA-A5-A0GB 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GE                   TCGA-A5-A0GH 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GM                   TCGA-A5-A0GP 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GU                   TCGA-AP-A051 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A053                   TCGA-AP-A054 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A056                   TCGA-AP-A05A 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A05H                   TCGA-AP-A05J 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A05N                   TCGA-AP-A05P 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A0L8                   TCGA-AP-A0L9 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LD                   TCGA-AP-A0LG 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LH                   TCGA-AP-A0LJ 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LN                   TCGA-AP-A0LT 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LV                   TCGA-AX-A05S 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AX-A05T                   TCGA-AX-A05U 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AX-A05W                   TCGA-AX-A05Y 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AX-A05Z                   TCGA-AX-A060 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AX-A062                   TCGA-AX-A063 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AX-A064                   TCGA-AX-A06B 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AX-A06F                   TCGA-AX-A06J 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AX-A0IW                   TCGA-AX-A0J1 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-B5-A0JR                   TCGA-B5-A0JZ 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-B5-A0K0                   TCGA-B5-A0K1 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-B5-A0K4                   TCGA-BG-A0LW 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-BG-A0MI                   TCGA-BK-A0C9 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-BK-A0CC 
"DEL PEAK 25(11Q25) WILD-TYPE" 
D74V2, multiclass
[1] "Remove cluster labels:" "DEL PEAK 25(11Q25) CNV"
clus
      DEL PEAK 25(11Q25) CNV DEL PEAK 25(11Q25) WILD-TYPE 
                           2                           51 
                  TCGA-A5-A0G2                   TCGA-A5-A0G5 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GA                   TCGA-A5-A0GB 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GE                   TCGA-A5-A0GH 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GM                   TCGA-A5-A0GP 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GU                   TCGA-AP-A051 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A053                   TCGA-AP-A054 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A056                   TCGA-AP-A05A 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A05H                   TCGA-AP-A05J 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A05N                   TCGA-AP-A05P 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A0L8                   TCGA-AP-A0L9 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LD                   TCGA-AP-A0LG 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LH                   TCGA-AP-A0LJ 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LN                   TCGA-AP-A0LT 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LV                   TCGA-AX-A05S 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AX-A05T                   TCGA-AX-A05U 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AX-A05W                   TCGA-AX-A05Y 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AX-A05Z                   TCGA-AX-A060 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AX-A062                   TCGA-AX-A063 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AX-A064                   TCGA-AX-A06B 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AX-A06F                   TCGA-AX-A06J 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AX-A0IW                   TCGA-AX-A0J1 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-B5-A0JR                   TCGA-B5-A0JZ 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-B5-A0K0                   TCGA-B5-A0K1 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-B5-A0K4                   TCGA-BG-A0LW 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-BG-A0MI                   TCGA-BK-A0C9 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-BK-A0CC 
"DEL PEAK 25(11Q25) WILD-TYPE" 
D74V3, multiclass
D74V4, multiclass
        clus
vv       DEL PEAK 25(11Q25) CNV DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                     56                           90
  CLUS_2                     14                           75
  CLUS_3                      9                          146
D74V5, multiclass
D74V6, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 25(11Q25) CNV          8   11
  DEL PEAK 25(11Q25) WILD-TYPE   65  110
        clus
vv       DEL PEAK 25(11Q25) CNV DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                     11                          110
  CLUS_2                      8                           65
D74V7, multiclass
        clus
vv       DEL PEAK 25(11Q25) CNV DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                     22                           27
  CLUS_2                      8                           28
  CLUS_3                      6                           27
D74V8, multiclass
        clus
vv       DEL PEAK 25(11Q25) CNV DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                     18                           28
  CLUS_2                     12                           24
  CLUS_3                      6                           30
D74V9, multiclass
D74V10, multiclass
        clus
vv       DEL PEAK 25(11Q25) CNV DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                      4                           23
  CLUS_2                     11                          211
  CLUS_3                     71                          175
D74V11, multiclass
        clus
vv       DEL PEAK 25(11Q25) CNV DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                     52                          117
  CLUS_2                     10                          105
  CLUS_3                     17                           71
D74V12, multiclass
        clus
vv       DEL PEAK 25(11Q25) CNV DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                     21                           78
  CLUS_2                     11                          127
  CLUS_3                     43                           67
  CLUS_4                      4                           21

Clustering(75) Variable = Del Peak 26(12q23.1)
D75V1, multiclass
[1] "Remove cluster labels:"   "DEL PEAK 26(12Q23.1) CNV"
clus
      DEL PEAK 26(12Q23.1) CNV DEL PEAK 26(12Q23.1) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A053                     TCGA-AP-A054 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A056                     TCGA-AP-A05A 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A05D                     TCGA-AP-A05J 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-BK-A0CC 
"DEL PEAK 26(12Q23.1) WILD-TYPE" 
D75V2, multiclass
[1] "Remove cluster labels:"   "DEL PEAK 26(12Q23.1) CNV"
clus
      DEL PEAK 26(12Q23.1) CNV DEL PEAK 26(12Q23.1) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A053                     TCGA-AP-A054 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A056                     TCGA-AP-A05A 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A05D                     TCGA-AP-A05J 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-BK-A0CC 
"DEL PEAK 26(12Q23.1) WILD-TYPE" 
D75V3, multiclass
D75V4, multiclass
        clus
vv       DEL PEAK 26(12Q23.1) CNV DEL PEAK 26(12Q23.1) WILD-TYPE
  CLUS_1                       33                            113
  CLUS_2                       10                             79
  CLUS_3                        1                            154
D75V5, multiclass
D75V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(12Q23.1) CNV         10    4
  DEL PEAK 26(12Q23.1) WILD-TYPE   63  117
        clus
vv       DEL PEAK 26(12Q23.1) CNV DEL PEAK 26(12Q23.1) WILD-TYPE
  CLUS_1                        4                            117
  CLUS_2                       10                             63
D75V7, multiclass
        clus
vv       DEL PEAK 26(12Q23.1) CNV DEL PEAK 26(12Q23.1) WILD-TYPE
  CLUS_1                       19                             30
  CLUS_2                        5                             31
  CLUS_3                        4                             29
D75V8, multiclass
        clus
vv       DEL PEAK 26(12Q23.1) CNV DEL PEAK 26(12Q23.1) WILD-TYPE
  CLUS_1                       18                             28
  CLUS_2                        8                             28
  CLUS_3                        2                             34
D75V9, multiclass
D75V10, multiclass
        clus
vv       DEL PEAK 26(12Q23.1) CNV DEL PEAK 26(12Q23.1) WILD-TYPE
  CLUS_1                        0                             27
  CLUS_2                        3                            219
  CLUS_3                       47                            199
D75V11, multiclass
        clus
vv       DEL PEAK 26(12Q23.1) CNV DEL PEAK 26(12Q23.1) WILD-TYPE
  CLUS_1                       30                            139
  CLUS_2                        2                            113
  CLUS_3                       12                             76
D75V12, multiclass
        clus
vv       DEL PEAK 26(12Q23.1) CNV DEL PEAK 26(12Q23.1) WILD-TYPE
  CLUS_1                       17                             82
  CLUS_2                        2                            136
  CLUS_3                       22                             88
  CLUS_4                        3                             22

Clustering(76) Variable = Del Peak 27(12q24.33)
D76V1, multiclass
[1] "Remove cluster labels:"    "DEL PEAK 27(12Q24.33) CNV"
clus
      DEL PEAK 27(12Q24.33) CNV DEL PEAK 27(12Q24.33) WILD-TYPE 
                              2                              51 
                     TCGA-A5-A0G2                      TCGA-A5-A0G5 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GA                      TCGA-A5-A0GB 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GE                      TCGA-A5-A0GH 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GM                      TCGA-A5-A0GP 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GU                      TCGA-AP-A051 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A053                      TCGA-AP-A054 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A056                      TCGA-AP-A05A 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A05D                      TCGA-AP-A05J 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A05N                      TCGA-AP-A05P 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0L8                      TCGA-AP-A0L9 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LD                      TCGA-AP-A0LG 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LH                      TCGA-AP-A0LJ 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LN                      TCGA-AP-A0LT 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LV                      TCGA-AX-A05S 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05T                      TCGA-AX-A05U 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05W                      TCGA-AX-A05Y 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05Z                      TCGA-AX-A060 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A062                      TCGA-AX-A063 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A064                      TCGA-AX-A06B 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A06F                      TCGA-AX-A06J 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A0IW                      TCGA-AX-A0J1 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0JR                      TCGA-B5-A0JZ 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0K0                      TCGA-B5-A0K1 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0K4                      TCGA-BG-A0LW 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-BG-A0MI                      TCGA-BK-A0C9 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-BK-A0CC 
"DEL PEAK 27(12Q24.33) WILD-TYPE" 
D76V2, multiclass
[1] "Remove cluster labels:"    "DEL PEAK 27(12Q24.33) CNV"
clus
      DEL PEAK 27(12Q24.33) CNV DEL PEAK 27(12Q24.33) WILD-TYPE 
                              2                              51 
                     TCGA-A5-A0G2                      TCGA-A5-A0G5 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GA                      TCGA-A5-A0GB 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GE                      TCGA-A5-A0GH 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GM                      TCGA-A5-A0GP 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GU                      TCGA-AP-A051 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A053                      TCGA-AP-A054 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A056                      TCGA-AP-A05A 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A05D                      TCGA-AP-A05J 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A05N                      TCGA-AP-A05P 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0L8                      TCGA-AP-A0L9 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LD                      TCGA-AP-A0LG 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LH                      TCGA-AP-A0LJ 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LN                      TCGA-AP-A0LT 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LV                      TCGA-AX-A05S 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05T                      TCGA-AX-A05U 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05W                      TCGA-AX-A05Y 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05Z                      TCGA-AX-A060 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A062                      TCGA-AX-A063 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A064                      TCGA-AX-A06B 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A06F                      TCGA-AX-A06J 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A0IW                      TCGA-AX-A0J1 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0JR                      TCGA-B5-A0JZ 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0K0                      TCGA-B5-A0K1 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0K4                      TCGA-BG-A0LW 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-BG-A0MI                      TCGA-BK-A0C9 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-BK-A0CC 
"DEL PEAK 27(12Q24.33) WILD-TYPE" 
D76V3, multiclass
D76V4, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) CNV DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                        41                             105
  CLUS_2                        12                              77
  CLUS_3                         3                             152
D76V5, multiclass
D76V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 27(12Q24.33) CNV          7    4
  DEL PEAK 27(12Q24.33) WILD-TYPE   66  117
        clus
vv       DEL PEAK 27(12Q24.33) CNV DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                         4                             117
  CLUS_2                         7                              66
D76V7, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) CNV DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                        23                              26
  CLUS_2                         3                              33
  CLUS_3                         4                              29
D76V8, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) CNV DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                        21                              25
  CLUS_2                         7                              29
  CLUS_3                         2                              34
D76V9, multiclass
D76V10, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) CNV DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                         2                              25
  CLUS_2                         4                             218
  CLUS_3                        53                             193
D76V11, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) CNV DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                        42                             127
  CLUS_2                         3                             112
  CLUS_3                        11                              77
D76V12, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) CNV DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                        17                              82
  CLUS_2                         4                             134
  CLUS_3                        30                              80
  CLUS_4                         5                              20

Clustering(77) Variable = Del Peak 28(13q11)
D77V1, multiclass
        clus
vv       DEL PEAK 28(13Q11) CNV DEL PEAK 28(13Q11) WILD-TYPE
  CLUS_1                      1                           13
  CLUS_2                      4                           13
  CLUS_3                      1                           11
  CLUS_4                      0                           10
D77V2, multiclass
        clus
vv       DEL PEAK 28(13Q11) CNV DEL PEAK 28(13Q11) WILD-TYPE
  CLUS_1                      1                           18
  CLUS_2                      1                           18
  CLUS_3                      4                           11
D77V3, multiclass
D77V4, multiclass
        clus
vv       DEL PEAK 28(13Q11) CNV DEL PEAK 28(13Q11) WILD-TYPE
  CLUS_1                     47                           99
  CLUS_2                     19                           70
  CLUS_3                     10                          145
D77V5, multiclass
D77V6, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 28(13Q11) CNV         10    8
  DEL PEAK 28(13Q11) WILD-TYPE   63  113
        clus
vv       DEL PEAK 28(13Q11) CNV DEL PEAK 28(13Q11) WILD-TYPE
  CLUS_1                      8                          113
  CLUS_2                     10                           63
D77V7, multiclass
        clus
vv       DEL PEAK 28(13Q11) CNV DEL PEAK 28(13Q11) WILD-TYPE
  CLUS_1                     27                           22
  CLUS_2                      7                           29
  CLUS_3                      8                           25
D77V8, multiclass
        clus
vv       DEL PEAK 28(13Q11) CNV DEL PEAK 28(13Q11) WILD-TYPE
  CLUS_1                     25                           21
  CLUS_2                     10                           26
  CLUS_3                      7                           29
D77V9, multiclass
D77V10, multiclass
        clus
vv       DEL PEAK 28(13Q11) CNV DEL PEAK 28(13Q11) WILD-TYPE
  CLUS_1                      7                           20
  CLUS_2                     16                          206
  CLUS_3                     66                          180
D77V11, multiclass
        clus
vv       DEL PEAK 28(13Q11) CNV DEL PEAK 28(13Q11) WILD-TYPE
  CLUS_1                     43                          126
  CLUS_2                     13                          102
  CLUS_3                     21                           67
D77V12, multiclass
        clus
vv       DEL PEAK 28(13Q11) CNV DEL PEAK 28(13Q11) WILD-TYPE
  CLUS_1                     30                           69
  CLUS_2                     16                          122
  CLUS_3                     28                           82
  CLUS_4                      3                           22

Clustering(78) Variable = Del Peak 29(13q14.2)
D78V1, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) CNV DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                        1                             13
  CLUS_2                        3                             14
  CLUS_3                        1                             11
  CLUS_4                        0                             10
D78V2, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) CNV DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                        1                             18
  CLUS_2                        1                             18
  CLUS_3                        3                             12
D78V3, multiclass
D78V4, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) CNV DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                       48                             98
  CLUS_2                       23                             66
  CLUS_3                       14                            141
D78V5, multiclass
D78V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(13Q14.2) CNV         12   10
  DEL PEAK 29(13Q14.2) WILD-TYPE   61  111
        clus
vv       DEL PEAK 29(13Q14.2) CNV DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                       10                            111
  CLUS_2                       12                             61
D78V7, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) CNV DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                       27                             22
  CLUS_2                        9                             27
  CLUS_3                       11                             22
D78V8, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) CNV DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                       25                             21
  CLUS_2                       11                             25
  CLUS_3                       11                             25
D78V9, multiclass
D78V10, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) CNV DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                        8                             19
  CLUS_2                       19                            203
  CLUS_3                       70                            176
D78V11, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) CNV DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                       48                            121
  CLUS_2                       19                             96
  CLUS_3                       19                             69
D78V12, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) CNV DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                       29                             70
  CLUS_2                       21                            117
  CLUS_3                       32                             78
  CLUS_4                        4                             21

Clustering(79) Variable = Del Peak 30(14q13.1)
D79V1, multiclass
        clus
vv       DEL PEAK 30(14Q13.1) CNV DEL PEAK 30(14Q13.1) WILD-TYPE
  CLUS_1                        0                             14
  CLUS_2                        5                             12
  CLUS_3                        0                             12
  CLUS_4                        0                             10
D79V2, multiclass
        clus
vv       DEL PEAK 30(14Q13.1) CNV DEL PEAK 30(14Q13.1) WILD-TYPE
  CLUS_1                        0                             19
  CLUS_2                        0                             19
  CLUS_3                        5                             10
D79V3, multiclass
D79V4, multiclass
        clus
vv       DEL PEAK 30(14Q13.1) CNV DEL PEAK 30(14Q13.1) WILD-TYPE
  CLUS_1                       43                            103
  CLUS_2                        7                             82
  CLUS_3                        6                            149
D79V5, multiclass
D79V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(14Q13.1) CNV          7    4
  DEL PEAK 30(14Q13.1) WILD-TYPE   66  117
        clus
vv       DEL PEAK 30(14Q13.1) CNV DEL PEAK 30(14Q13.1) WILD-TYPE
  CLUS_1                        4                            117
  CLUS_2                        7                             66
D79V7, multiclass
        clus
vv       DEL PEAK 30(14Q13.1) CNV DEL PEAK 30(14Q13.1) WILD-TYPE
  CLUS_1                       17                             32
  CLUS_2                        3                             33
  CLUS_3                        5                             28
D79V8, multiclass
        clus
vv       DEL PEAK 30(14Q13.1) CNV DEL PEAK 30(14Q13.1) WILD-TYPE
  CLUS_1                       14                             32
  CLUS_2                        6                             30
  CLUS_3                        5                             31
D79V9, multiclass
D79V10, multiclass
        clus
vv       DEL PEAK 30(14Q13.1) CNV DEL PEAK 30(14Q13.1) WILD-TYPE
  CLUS_1                        3                             24
  CLUS_2                        6                            216
  CLUS_3                       55                            191
D79V11, multiclass
        clus
vv       DEL PEAK 30(14Q13.1) CNV DEL PEAK 30(14Q13.1) WILD-TYPE
  CLUS_1                       39                            130
  CLUS_2                        5                            110
  CLUS_3                       14                             74
D79V12, multiclass
        clus
vv       DEL PEAK 30(14Q13.1) CNV DEL PEAK 30(14Q13.1) WILD-TYPE
  CLUS_1                       16                             83
  CLUS_2                        7                            131
  CLUS_3                       31                             79
  CLUS_4                        4                             21

Clustering(80) Variable = Del Peak 31(15q15.1)
D80V1, multiclass
        clus
vv       DEL PEAK 31(15Q15.1) CNV DEL PEAK 31(15Q15.1) WILD-TYPE
  CLUS_1                        1                             13
  CLUS_2                        6                             11
  CLUS_3                        0                             12
  CLUS_4                        0                             10
D80V2, multiclass
        clus
vv       DEL PEAK 31(15Q15.1) CNV DEL PEAK 31(15Q15.1) WILD-TYPE
  CLUS_1                        1                             18
  CLUS_2                        0                             19
  CLUS_3                        6                              9
D80V3, multiclass
D80V4, multiclass
        clus
vv       DEL PEAK 31(15Q15.1) CNV DEL PEAK 31(15Q15.1) WILD-TYPE
  CLUS_1                       74                             72
  CLUS_2                       27                             62
  CLUS_3                       12                            143
D80V5, multiclass
D80V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(15Q15.1) CNV         14   14
  DEL PEAK 31(15Q15.1) WILD-TYPE   59  107
        clus
vv       DEL PEAK 31(15Q15.1) CNV DEL PEAK 31(15Q15.1) WILD-TYPE
  CLUS_1                       14                            107
  CLUS_2                       14                             59
D80V7, multiclass
        clus
vv       DEL PEAK 31(15Q15.1) CNV DEL PEAK 31(15Q15.1) WILD-TYPE
  CLUS_1                       38                             11
  CLUS_2                        6                             30
  CLUS_3                        7                             26
D80V8, multiclass
        clus
vv       DEL PEAK 31(15Q15.1) CNV DEL PEAK 31(15Q15.1) WILD-TYPE
  CLUS_1                       35                             11
  CLUS_2                       10                             26
  CLUS_3                        6                             30
D80V9, multiclass
D80V10, multiclass
        clus
vv       DEL PEAK 31(15Q15.1) CNV DEL PEAK 31(15Q15.1) WILD-TYPE
  CLUS_1                        8                             19
  CLUS_2                       17                            205
  CLUS_3                      102                            144
D80V11, multiclass
        clus
vv       DEL PEAK 31(15Q15.1) CNV DEL PEAK 31(15Q15.1) WILD-TYPE
  CLUS_1                       68                            101
  CLUS_2                       13                            102
  CLUS_3                       29                             59
D80V12, multiclass
        clus
vv       DEL PEAK 31(15Q15.1) CNV DEL PEAK 31(15Q15.1) WILD-TYPE
  CLUS_1                       37                             62
  CLUS_2                       16                            122
  CLUS_3                       50                             60
  CLUS_4                        7                             18

Clustering(81) Variable = Del Peak 32(15q23)
D81V1, multiclass
        clus
vv       DEL PEAK 32(15Q23) CNV DEL PEAK 32(15Q23) WILD-TYPE
  CLUS_1                      0                           14
  CLUS_2                      6                           11
  CLUS_3                      0                           12
  CLUS_4                      0                           10
D81V2, multiclass
        clus
vv       DEL PEAK 32(15Q23) CNV DEL PEAK 32(15Q23) WILD-TYPE
  CLUS_1                      0                           19
  CLUS_2                      0                           19
  CLUS_3                      6                            9
D81V3, multiclass
D81V4, multiclass
        clus
vv       DEL PEAK 32(15Q23) CNV DEL PEAK 32(15Q23) WILD-TYPE
  CLUS_1                     67                           79
  CLUS_2                     18                           71
  CLUS_3                      7                          148
D81V5, multiclass
D81V6, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 32(15Q23) CNV          8   12
  DEL PEAK 32(15Q23) WILD-TYPE   65  109
        clus
vv       DEL PEAK 32(15Q23) CNV DEL PEAK 32(15Q23) WILD-TYPE
  CLUS_1                     12                          109
  CLUS_2                      8                           65
D81V7, multiclass
        clus
vv       DEL PEAK 32(15Q23) CNV DEL PEAK 32(15Q23) WILD-TYPE
  CLUS_1                     36                           13
  CLUS_2                      5                           31
  CLUS_3                      5                           28
D81V8, multiclass
        clus
vv       DEL PEAK 32(15Q23) CNV DEL PEAK 32(15Q23) WILD-TYPE
  CLUS_1                     32                           14
  CLUS_2                     10                           26
  CLUS_3                      4                           32
D81V9, multiclass
D81V10, multiclass
        clus
vv       DEL PEAK 32(15Q23) CNV DEL PEAK 32(15Q23) WILD-TYPE
  CLUS_1                      6                           21
  CLUS_2                     13                          209
  CLUS_3                     85                          161
D81V11, multiclass
        clus
vv       DEL PEAK 32(15Q23) CNV DEL PEAK 32(15Q23) WILD-TYPE
  CLUS_1                     63                          106
  CLUS_2                      9                          106
  CLUS_3                     18                           70
D81V12, multiclass
        clus
vv       DEL PEAK 32(15Q23) CNV DEL PEAK 32(15Q23) WILD-TYPE
  CLUS_1                     24                           75
  CLUS_2                     11                          127
  CLUS_3                     49                           61
  CLUS_4                      6                           19

Clustering(82) Variable = Del Peak 33(16p13.3)
D82V1, multiclass
        clus
vv       DEL PEAK 33(16P13.3) CNV DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                        1                             13
  CLUS_2                        6                             11
  CLUS_3                        0                             12
  CLUS_4                        0                             10
D82V2, multiclass
        clus
vv       DEL PEAK 33(16P13.3) CNV DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                        1                             18
  CLUS_2                        0                             19
  CLUS_3                        6                              9
D82V3, multiclass
D82V4, multiclass
        clus
vv       DEL PEAK 33(16P13.3) CNV DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                       52                             94
  CLUS_2                       18                             71
  CLUS_3                        4                            151
D82V5, multiclass
D82V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(16P13.3) CNV          9    7
  DEL PEAK 33(16P13.3) WILD-TYPE   64  114
        clus
vv       DEL PEAK 33(16P13.3) CNV DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                        7                            114
  CLUS_2                        9                             64
D82V7, multiclass
        clus
vv       DEL PEAK 33(16P13.3) CNV DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                       26                             23
  CLUS_2                        5                             31
  CLUS_3                        4                             29
D82V8, multiclass
        clus
vv       DEL PEAK 33(16P13.3) CNV DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                       25                             21
  CLUS_2                        7                             29
  CLUS_3                        3                             33
D82V9, multiclass
D82V10, multiclass
        clus
vv       DEL PEAK 33(16P13.3) CNV DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                        4                             23
  CLUS_2                        7                            215
  CLUS_3                       70                            176
D82V11, multiclass
        clus
vv       DEL PEAK 33(16P13.3) CNV DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                       47                            122
  CLUS_2                        8                            107
  CLUS_3                       18                             70
D82V12, multiclass
        clus
vv       DEL PEAK 33(16P13.3) CNV DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                       25                             74
  CLUS_2                        8                            130
  CLUS_3                       36                             74
  CLUS_4                        4                             21

Clustering(83) Variable = Del Peak 34(16q21)
D83V1, multiclass
        clus
vv       DEL PEAK 34(16Q21) CNV DEL PEAK 34(16Q21) WILD-TYPE
  CLUS_1                      0                           14
  CLUS_2                      8                            9
  CLUS_3                      1                           11
  CLUS_4                      0                           10
D83V2, multiclass
        clus
vv       DEL PEAK 34(16Q21) CNV DEL PEAK 34(16Q21) WILD-TYPE
  CLUS_1                      0                           19
  CLUS_2                      1                           18
  CLUS_3                      8                            7
D83V3, multiclass
D83V4, multiclass
        clus
vv       DEL PEAK 34(16Q21) CNV DEL PEAK 34(16Q21) WILD-TYPE
  CLUS_1                     80                           66
  CLUS_2                     29                           60
  CLUS_3                     15                          140
D83V5, multiclass
D83V6, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 34(16Q21) CNV         13   21
  DEL PEAK 34(16Q21) WILD-TYPE   60  100
        clus
vv       DEL PEAK 34(16Q21) CNV DEL PEAK 34(16Q21) WILD-TYPE
  CLUS_1                     21                          100
  CLUS_2                     13                           60
D83V7, multiclass
        clus
vv       DEL PEAK 34(16Q21) CNV DEL PEAK 34(16Q21) WILD-TYPE
  CLUS_1                     34                           15
  CLUS_2                      6                           30
  CLUS_3                      9                           24
D83V8, multiclass
        clus
vv       DEL PEAK 34(16Q21) CNV DEL PEAK 34(16Q21) WILD-TYPE
  CLUS_1                     33                           13
  CLUS_2                      9                           27
  CLUS_3                      7                           29
D83V9, multiclass
D83V10, multiclass
        clus
vv       DEL PEAK 34(16Q21) CNV DEL PEAK 34(16Q21) WILD-TYPE
  CLUS_1                      6                           21
  CLUS_2                     27                          195
  CLUS_3                    106                          140
D83V11, multiclass
        clus
vv       DEL PEAK 34(16Q21) CNV DEL PEAK 34(16Q21) WILD-TYPE
  CLUS_1                     76                           93
  CLUS_2                     17                           98
  CLUS_3                     29                           59
D83V12, multiclass
        clus
vv       DEL PEAK 34(16Q21) CNV DEL PEAK 34(16Q21) WILD-TYPE
  CLUS_1                     34                           65
  CLUS_2                     19                          119
  CLUS_3                     60                           50
  CLUS_4                      9                           16

Clustering(84) Variable = Del Peak 35(16q23.1)
D84V1, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) CNV DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                        1                             13
  CLUS_2                        9                              8
  CLUS_3                        2                             10
  CLUS_4                        0                             10
D84V2, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) CNV DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                        1                             18
  CLUS_2                        2                             17
  CLUS_3                        9                              6
D84V3, multiclass
D84V4, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) CNV DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                       84                             62
  CLUS_2                       30                             59
  CLUS_3                       16                            139
D84V5, multiclass
D84V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(16Q23.1) CNV         18   23
  DEL PEAK 35(16Q23.1) WILD-TYPE   55   98
        clus
vv       DEL PEAK 35(16Q23.1) CNV DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                       23                             98
  CLUS_2                       18                             55
D84V7, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) CNV DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                       37                             12
  CLUS_2                        7                             29
  CLUS_3                        9                             24
D84V8, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) CNV DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                       35                             11
  CLUS_2                       11                             25
  CLUS_3                        7                             29
D84V9, multiclass
D84V10, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) CNV DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                        5                             22
  CLUS_2                       28                            194
  CLUS_3                      116                            130
D84V11, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) CNV DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                       78                             91
  CLUS_2                       17                             98
  CLUS_3                       33                             55
D84V12, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) CNV DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                       41                             58
  CLUS_2                       18                            120
  CLUS_3                       60                             50
  CLUS_4                        9                             16

Clustering(85) Variable = Del Peak 36(17p13.3)
D85V1, multiclass
        clus
vv       DEL PEAK 36(17P13.3) CNV DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                        0                             14
  CLUS_2                        8                              9
  CLUS_3                        1                             11
  CLUS_4                        0                             10
D85V2, multiclass
        clus
vv       DEL PEAK 36(17P13.3) CNV DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                        1                             18
  CLUS_2                        0                             19
  CLUS_3                        8                              7
D85V3, multiclass
D85V4, multiclass
        clus
vv       DEL PEAK 36(17P13.3) CNV DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                       58                             88
  CLUS_2                       23                             66
  CLUS_3                       13                            142
D85V5, multiclass
D85V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 36(17P13.3) CNV         12   15
  DEL PEAK 36(17P13.3) WILD-TYPE   61  106
        clus
vv       DEL PEAK 36(17P13.3) CNV DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                       15                            106
  CLUS_2                       12                             61
D85V7, multiclass
        clus
vv       DEL PEAK 36(17P13.3) CNV DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                       30                             19
  CLUS_2                        2                             34
  CLUS_3                       12                             21
D85V8, multiclass
        clus
vv       DEL PEAK 36(17P13.3) CNV DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                       26                             20
  CLUS_2                        7                             29
  CLUS_3                       11                             25
D85V9, multiclass
D85V10, multiclass
        clus
vv       DEL PEAK 36(17P13.3) CNV DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                        8                             19
  CLUS_2                       22                            200
  CLUS_3                       80                            166
D85V11, multiclass
        clus
vv       DEL PEAK 36(17P13.3) CNV DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                       54                            115
  CLUS_2                       16                             99
  CLUS_3                       21                             67
D85V12, multiclass
        clus
vv       DEL PEAK 36(17P13.3) CNV DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                       24                             75
  CLUS_2                       18                            120
  CLUS_3                       43                             67
  CLUS_4                        6                             19

Clustering(86) Variable = Del Peak 37(17p11.2)
D86V1, multiclass
        clus
vv       DEL PEAK 37(17P11.2) CNV DEL PEAK 37(17P11.2) WILD-TYPE
  CLUS_1                        0                             14
  CLUS_2                        8                              9
  CLUS_3                        1                             11
  CLUS_4                        0                             10
D86V2, multiclass
        clus
vv       DEL PEAK 37(17P11.2) CNV DEL PEAK 37(17P11.2) WILD-TYPE
  CLUS_1                        1                             18
  CLUS_2                        0                             19
  CLUS_3                        8                              7
D86V3, multiclass
D86V4, multiclass
        clus
vv       DEL PEAK 37(17P11.2) CNV DEL PEAK 37(17P11.2) WILD-TYPE
  CLUS_1                       68                             78
  CLUS_2                       23                             66
  CLUS_3                       13                            142
D86V5, multiclass
D86V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 37(17P11.2) CNV         12   15
  DEL PEAK 37(17P11.2) WILD-TYPE   61  106
        clus
vv       DEL PEAK 37(17P11.2) CNV DEL PEAK 37(17P11.2) WILD-TYPE
  CLUS_1                       15                            106
  CLUS_2                       12                             61
D86V7, multiclass
        clus
vv       DEL PEAK 37(17P11.2) CNV DEL PEAK 37(17P11.2) WILD-TYPE
  CLUS_1                       31                             18
  CLUS_2                        4                             32
  CLUS_3                       12                             21
D86V8, multiclass
        clus
vv       DEL PEAK 37(17P11.2) CNV DEL PEAK 37(17P11.2) WILD-TYPE
  CLUS_1                       30                             16
  CLUS_2                        7                             29
  CLUS_3                       10                             26
D86V9, multiclass
D86V10, multiclass
        clus
vv       DEL PEAK 37(17P11.2) CNV DEL PEAK 37(17P11.2) WILD-TYPE
  CLUS_1                        6                             21
  CLUS_2                       21                            201
  CLUS_3                       90                            156
D86V11, multiclass
        clus
vv       DEL PEAK 37(17P11.2) CNV DEL PEAK 37(17P11.2) WILD-TYPE
  CLUS_1                       59                            110
  CLUS_2                       17                             98
  CLUS_3                       25                             63
D86V12, multiclass
        clus
vv       DEL PEAK 37(17P11.2) CNV DEL PEAK 37(17P11.2) WILD-TYPE
  CLUS_1                       31                             68
  CLUS_2                       19                            119
  CLUS_3                       45                             65
  CLUS_4                        6                             19

Clustering(87) Variable = Del Peak 38(17p11.2)
D87V1, multiclass
        clus
vv       DEL PEAK 38(17P11.2) CNV DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                        0                             14
  CLUS_2                        8                              9
  CLUS_3                        0                             12
  CLUS_4                        0                             10
D87V2, multiclass
        clus
vv       DEL PEAK 38(17P11.2) CNV DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                        0                             19
  CLUS_2                        0                             19
  CLUS_3                        8                              7
D87V3, multiclass
D87V4, multiclass
        clus
vv       DEL PEAK 38(17P11.2) CNV DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                       63                             83
  CLUS_2                       23                             66
  CLUS_3                       11                            144
D87V5, multiclass
D87V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 38(17P11.2) CNV         11   13
  DEL PEAK 38(17P11.2) WILD-TYPE   62  108
        clus
vv       DEL PEAK 38(17P11.2) CNV DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                       13                            108
  CLUS_2                       11                             62
D87V7, multiclass
        clus
vv       DEL PEAK 38(17P11.2) CNV DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                       30                             19
  CLUS_2                        3                             33
  CLUS_3                        9                             24
D87V8, multiclass
        clus
vv       DEL PEAK 38(17P11.2) CNV DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                       27                             19
  CLUS_2                        6                             30
  CLUS_3                        9                             27
D87V9, multiclass
D87V10, multiclass
        clus
vv       DEL PEAK 38(17P11.2) CNV DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                        6                             21
  CLUS_2                       20                            202
  CLUS_3                       82                            164
D87V11, multiclass
        clus
vv       DEL PEAK 38(17P11.2) CNV DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                       58                            111
  CLUS_2                       15                            100
  CLUS_3                       22                             66
D87V12, multiclass
        clus
vv       DEL PEAK 38(17P11.2) CNV DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                       28                             71
  CLUS_2                       17                            121
  CLUS_3                       44                             66
  CLUS_4                        6                             19

Clustering(88) Variable = Del Peak 39(17q11.2)
D88V1, multiclass
        clus
vv       DEL PEAK 39(17Q11.2) CNV DEL PEAK 39(17Q11.2) WILD-TYPE
  CLUS_1                        0                             14
  CLUS_2                        7                             10
  CLUS_3                        0                             12
  CLUS_4                        0                             10
D88V2, multiclass
        clus
vv       DEL PEAK 39(17Q11.2) CNV DEL PEAK 39(17Q11.2) WILD-TYPE
  CLUS_1                        0                             19
  CLUS_2                        0                             19
  CLUS_3                        7                              8
D88V3, multiclass
D88V4, multiclass
        clus
vv       DEL PEAK 39(17Q11.2) CNV DEL PEAK 39(17Q11.2) WILD-TYPE
  CLUS_1                       48                             98
  CLUS_2                       21                             68
  CLUS_3                       14                            141
D88V5, multiclass
D88V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 39(17Q11.2) CNV         10   13
  DEL PEAK 39(17Q11.2) WILD-TYPE   63  108
        clus
vv       DEL PEAK 39(17Q11.2) CNV DEL PEAK 39(17Q11.2) WILD-TYPE
  CLUS_1                       13                            108
  CLUS_2                       10                             63
D88V7, multiclass
        clus
vv       DEL PEAK 39(17Q11.2) CNV DEL PEAK 39(17Q11.2) WILD-TYPE
  CLUS_1                       22                             27
  CLUS_2                        4                             32
  CLUS_3                       10                             23
D88V8, multiclass
        clus
vv       DEL PEAK 39(17Q11.2) CNV DEL PEAK 39(17Q11.2) WILD-TYPE
  CLUS_1                       23                             23
  CLUS_2                        4                             32
  CLUS_3                        9                             27
D88V9, multiclass
D88V10, multiclass
        clus
vv       DEL PEAK 39(17Q11.2) CNV DEL PEAK 39(17Q11.2) WILD-TYPE
  CLUS_1                        6                             21
  CLUS_2                       22                            200
  CLUS_3                       66                            180
D88V11, multiclass
        clus
vv       DEL PEAK 39(17Q11.2) CNV DEL PEAK 39(17Q11.2) WILD-TYPE
  CLUS_1                       50                            119
  CLUS_2                       16                             99
  CLUS_3                       16                             72
D88V12, multiclass
        clus
vv       DEL PEAK 39(17Q11.2) CNV DEL PEAK 39(17Q11.2) WILD-TYPE
  CLUS_1                       24                             75
  CLUS_2                       18                            120
  CLUS_3                       33                             77
  CLUS_4                        7                             18

Clustering(89) Variable = Del Peak 40(17q21.2)
D89V1, multiclass
        clus
vv       DEL PEAK 40(17Q21.2) CNV DEL PEAK 40(17Q21.2) WILD-TYPE
  CLUS_1                        0                             14
  CLUS_2                        9                              8
  CLUS_3                        0                             12
  CLUS_4                        0                             10
D89V2, multiclass
        clus
vv       DEL PEAK 40(17Q21.2) CNV DEL PEAK 40(17Q21.2) WILD-TYPE
  CLUS_1                        0                             19
  CLUS_2                        0                             19
  CLUS_3                        9                              6
D89V3, multiclass
D89V4, multiclass
        clus
vv       DEL PEAK 40(17Q21.2) CNV DEL PEAK 40(17Q21.2) WILD-TYPE
  CLUS_1                       53                             93
  CLUS_2                       24                             65
  CLUS_3                       14                            141
D89V5, multiclass
D89V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 40(17Q21.2) CNV         12   11
  DEL PEAK 40(17Q21.2) WILD-TYPE   61  110
        clus
vv       DEL PEAK 40(17Q21.2) CNV DEL PEAK 40(17Q21.2) WILD-TYPE
  CLUS_1                       11                            110
  CLUS_2                       12                             61
D89V7, multiclass
        clus
vv       DEL PEAK 40(17Q21.2) CNV DEL PEAK 40(17Q21.2) WILD-TYPE
  CLUS_1                       26                             23
  CLUS_2                        5                             31
  CLUS_3                       12                             21
D89V8, multiclass
        clus
vv       DEL PEAK 40(17Q21.2) CNV DEL PEAK 40(17Q21.2) WILD-TYPE
  CLUS_1                       26                             20
  CLUS_2                        6                             30
  CLUS_3                       11                             25
D89V9, multiclass
D89V10, multiclass
        clus
vv       DEL PEAK 40(17Q21.2) CNV DEL PEAK 40(17Q21.2) WILD-TYPE
  CLUS_1                        6                             21
  CLUS_2                       21                            201
  CLUS_3                       72                            174
D89V11, multiclass
        clus
vv       DEL PEAK 40(17Q21.2) CNV DEL PEAK 40(17Q21.2) WILD-TYPE
  CLUS_1                       54                            115
  CLUS_2                       18                             97
  CLUS_3                       18                             70
D89V12, multiclass
        clus
vv       DEL PEAK 40(17Q21.2) CNV DEL PEAK 40(17Q21.2) WILD-TYPE
  CLUS_1                       25                             74
  CLUS_2                       20                            118
  CLUS_3                       38                             72
  CLUS_4                        7                             18

Clustering(90) Variable = Del Peak 41(18q23)
D90V1, multiclass
        clus
vv       DEL PEAK 41(18Q23) CNV DEL PEAK 41(18Q23) WILD-TYPE
  CLUS_1                      1                           13
  CLUS_2                      3                           14
  CLUS_3                      1                           11
  CLUS_4                      0                           10
D90V2, multiclass
        clus
vv       DEL PEAK 41(18Q23) CNV DEL PEAK 41(18Q23) WILD-TYPE
  CLUS_1                      2                           17
  CLUS_2                      0                           19
  CLUS_3                      3                           12
D90V3, multiclass
D90V4, multiclass
        clus
vv       DEL PEAK 41(18Q23) CNV DEL PEAK 41(18Q23) WILD-TYPE
  CLUS_1                     55                           91
  CLUS_2                     15                           74
  CLUS_3                     10                          145
D90V5, multiclass
D90V6, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 41(18Q23) CNV         13    9
  DEL PEAK 41(18Q23) WILD-TYPE   60  112
        clus
vv       DEL PEAK 41(18Q23) CNV DEL PEAK 41(18Q23) WILD-TYPE
  CLUS_1                      9                          112
  CLUS_2                     13                           60
D90V7, multiclass
        clus
vv       DEL PEAK 41(18Q23) CNV DEL PEAK 41(18Q23) WILD-TYPE
  CLUS_1                     23                           26
  CLUS_2                      8                           28
  CLUS_3                      7                           26
D90V8, multiclass
        clus
vv       DEL PEAK 41(18Q23) CNV DEL PEAK 41(18Q23) WILD-TYPE
  CLUS_1                     21                           25
  CLUS_2                     11                           25
  CLUS_3                      6                           30
D90V9, multiclass
D90V10, multiclass
        clus
vv       DEL PEAK 41(18Q23) CNV DEL PEAK 41(18Q23) WILD-TYPE
  CLUS_1                      7                           20
  CLUS_2                     14                          208
  CLUS_3                     69                          177
D90V11, multiclass
        clus
vv       DEL PEAK 41(18Q23) CNV DEL PEAK 41(18Q23) WILD-TYPE
  CLUS_1                     48                          121
  CLUS_2                     12                          103
  CLUS_3                     19                           69
D90V12, multiclass
        clus
vv       DEL PEAK 41(18Q23) CNV DEL PEAK 41(18Q23) WILD-TYPE
  CLUS_1                     25                           74
  CLUS_2                     13                          125
  CLUS_3                     35                           75
  CLUS_4                      6                           19

Clustering(91) Variable = Del Peak 42(19p13.3)
D91V1, multiclass
        clus
vv       DEL PEAK 42(19P13.3) CNV DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                        1                             13
  CLUS_2                       11                              6
  CLUS_3                        0                             12
  CLUS_4                        0                             10
D91V2, multiclass
        clus
vv       DEL PEAK 42(19P13.3) CNV DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                        1                             18
  CLUS_2                        0                             19
  CLUS_3                       11                              4
D91V3, multiclass
D91V4, multiclass
        clus
vv       DEL PEAK 42(19P13.3) CNV DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                       93                             53
  CLUS_2                       25                             64
  CLUS_3                        7                            148
D91V5, multiclass
D91V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 42(19P13.3) CNV         18   13
  DEL PEAK 42(19P13.3) WILD-TYPE   55  108
        clus
vv       DEL PEAK 42(19P13.3) CNV DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                       13                            108
  CLUS_2                       18                             55
D91V7, multiclass
        clus
vv       DEL PEAK 42(19P13.3) CNV DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                       37                             12
  CLUS_2                        7                             29
  CLUS_3                        9                             24
D91V8, multiclass
        clus
vv       DEL PEAK 42(19P13.3) CNV DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                       34                             12
  CLUS_2                       13                             23
  CLUS_3                        6                             30
D91V9, multiclass
D91V10, multiclass
        clus
vv       DEL PEAK 42(19P13.3) CNV DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                        5                             22
  CLUS_2                       16                            206
  CLUS_3                      119                            127
D91V11, multiclass
        clus
vv       DEL PEAK 42(19P13.3) CNV DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                       81                             88
  CLUS_2                       12                            103
  CLUS_3                       29                             59
D91V12, multiclass
        clus
vv       DEL PEAK 42(19P13.3) CNV DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                       36                             63
  CLUS_2                       13                            125
  CLUS_3                       67                             43
  CLUS_4                        6                             19

Clustering(92) Variable = Del Peak 43(19p12)
D92V1, multiclass
[1] "Remove cluster labels:" "DEL PEAK 43(19P12) CNV"
clus
      DEL PEAK 43(19P12) CNV DEL PEAK 43(19P12) WILD-TYPE 
                           2                           51 
                  TCGA-A5-A0G2                   TCGA-A5-A0G5 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-A5-A0GA                   TCGA-A5-A0GB 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-A5-A0GE                   TCGA-A5-A0GH 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-A5-A0GM                   TCGA-A5-A0GP 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-A5-A0GU                   TCGA-AP-A051 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A052                   TCGA-AP-A053 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A054                   TCGA-AP-A056 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A05A                   TCGA-AP-A05H 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A05J                   TCGA-AP-A05N 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A05P                   TCGA-AP-A0L8 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A0L9                   TCGA-AP-A0LD 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A0LG                   TCGA-AP-A0LH 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A0LJ                   TCGA-AP-A0LN 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A0LT                   TCGA-AP-A0LV 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A05S                   TCGA-AX-A05T 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A05U                   TCGA-AX-A05W 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A05Y                   TCGA-AX-A05Z 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A060                   TCGA-AX-A062 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A063                   TCGA-AX-A064 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A06B                   TCGA-AX-A06F 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A06J                   TCGA-AX-A0IW 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A0J1                   TCGA-B5-A0JR 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-B5-A0K0                   TCGA-B5-A0K1 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-B5-A0K4                   TCGA-BG-A0LW 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-BG-A0MI                   TCGA-BK-A0C9 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-BK-A0CC 
"DEL PEAK 43(19P12) WILD-TYPE" 
D92V2, multiclass
[1] "Remove cluster labels:" "DEL PEAK 43(19P12) CNV"
clus
      DEL PEAK 43(19P12) CNV DEL PEAK 43(19P12) WILD-TYPE 
                           2                           51 
                  TCGA-A5-A0G2                   TCGA-A5-A0G5 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-A5-A0GA                   TCGA-A5-A0GB 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-A5-A0GE                   TCGA-A5-A0GH 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-A5-A0GM                   TCGA-A5-A0GP 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-A5-A0GU                   TCGA-AP-A051 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A052                   TCGA-AP-A053 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A054                   TCGA-AP-A056 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A05A                   TCGA-AP-A05H 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A05J                   TCGA-AP-A05N 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A05P                   TCGA-AP-A0L8 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A0L9                   TCGA-AP-A0LD 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A0LG                   TCGA-AP-A0LH 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A0LJ                   TCGA-AP-A0LN 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A0LT                   TCGA-AP-A0LV 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A05S                   TCGA-AX-A05T 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A05U                   TCGA-AX-A05W 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A05Y                   TCGA-AX-A05Z 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A060                   TCGA-AX-A062 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A063                   TCGA-AX-A064 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A06B                   TCGA-AX-A06F 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A06J                   TCGA-AX-A0IW 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A0J1                   TCGA-B5-A0JR 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-B5-A0K0                   TCGA-B5-A0K1 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-B5-A0K4                   TCGA-BG-A0LW 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-BG-A0MI                   TCGA-BK-A0C9 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-BK-A0CC 
"DEL PEAK 43(19P12) WILD-TYPE" 
D92V3, multiclass
D92V4, multiclass
        clus
vv       DEL PEAK 43(19P12) CNV DEL PEAK 43(19P12) WILD-TYPE
  CLUS_1                     31                          115
  CLUS_2                     11                           78
  CLUS_3                      3                          152
D92V5, multiclass
D92V6, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 43(19P12) CNV          5    5
  DEL PEAK 43(19P12) WILD-TYPE   68  116
        clus
vv       DEL PEAK 43(19P12) CNV DEL PEAK 43(19P12) WILD-TYPE
  CLUS_1                      5                          116
  CLUS_2                      5                           68
D92V7, multiclass
        clus
vv       DEL PEAK 43(19P12) CNV DEL PEAK 43(19P12) WILD-TYPE
  CLUS_1                     16                           33
  CLUS_2                      5                           31
  CLUS_3                      3                           30
D92V8, multiclass
        clus
vv       DEL PEAK 43(19P12) CNV DEL PEAK 43(19P12) WILD-TYPE
  CLUS_1                     14                           32
  CLUS_2                      8                           28
  CLUS_3                      2                           34
D92V9, multiclass
D92V10, multiclass
        clus
vv       DEL PEAK 43(19P12) CNV DEL PEAK 43(19P12) WILD-TYPE
  CLUS_1                      3                           24
  CLUS_2                      5                          217
  CLUS_3                     42                          204
D92V11, multiclass
        clus
vv       DEL PEAK 43(19P12) CNV DEL PEAK 43(19P12) WILD-TYPE
  CLUS_1                     31                          138
  CLUS_2                      6                          109
  CLUS_3                      8                           80
D92V12, multiclass
        clus
vv       DEL PEAK 43(19P12) CNV DEL PEAK 43(19P12) WILD-TYPE
  CLUS_1                      9                           90
  CLUS_2                      6                          132
  CLUS_3                     26                           84
  CLUS_4                      4                           21

Clustering(93) Variable = Del Peak 44(19q13.43)
D93V1, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) CNV DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                         0                              14
  CLUS_2                         8                               9
  CLUS_3                         1                              11
  CLUS_4                         0                              10
D93V2, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) CNV DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                         1                              18
  CLUS_2                         0                              19
  CLUS_3                         8                               7
D93V3, multiclass
D93V4, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) CNV DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                        35                             111
  CLUS_2                        12                              77
  CLUS_3                         2                             153
D93V5, multiclass
D93V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 44(19Q13.43) CNV          6    7
  DEL PEAK 44(19Q13.43) WILD-TYPE   67  114
        clus
vv       DEL PEAK 44(19Q13.43) CNV DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                         7                             114
  CLUS_2                         6                              67
D93V7, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) CNV DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                        18                              31
  CLUS_2                         4                              32
  CLUS_3                         4                              29
D93V8, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) CNV DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                        18                              28
  CLUS_2                         6                              30
  CLUS_3                         2                              34
D93V9, multiclass
D93V10, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) CNV DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                         1                              26
  CLUS_2                         4                             218
  CLUS_3                        51                             195
D93V11, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) CNV DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                        32                             137
  CLUS_2                         3                             112
  CLUS_3                        15                              73
D93V12, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) CNV DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                        20                              79
  CLUS_2                         3                             135
  CLUS_3                        23                              87
  CLUS_4                         4                              21

Clustering(94) Variable = Del Peak 45(20p12.1)
D94V1, multiclass
[1] "Remove cluster labels:"   "DEL PEAK 45(20P12.1) CNV"
clus
      DEL PEAK 45(20P12.1) CNV DEL PEAK 45(20P12.1) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G5                     TCGA-A5-A0GA 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-A5-A0GB                     TCGA-A5-A0GE 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-A5-A0GH                     TCGA-A5-A0GM 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-A5-A0GP                     TCGA-A5-A0GU 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AP-A051                     TCGA-AP-A052 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AP-A053                     TCGA-AP-A054 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AP-A056                     TCGA-AP-A05A 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AP-A05D                     TCGA-AP-A05J 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-BK-A0CC 
"DEL PEAK 45(20P12.1) WILD-TYPE" 
D94V2, multiclass
[1] "Remove cluster labels:"   "DEL PEAK 45(20P12.1) CNV"
clus
      DEL PEAK 45(20P12.1) CNV DEL PEAK 45(20P12.1) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G5                     TCGA-A5-A0GA 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-A5-A0GB                     TCGA-A5-A0GE 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-A5-A0GH                     TCGA-A5-A0GM 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-A5-A0GP                     TCGA-A5-A0GU 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AP-A051                     TCGA-AP-A052 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AP-A053                     TCGA-AP-A054 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AP-A056                     TCGA-AP-A05A 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AP-A05D                     TCGA-AP-A05J 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"DEL PEAK 45(20P12.1) WILD-TYPE" "DEL PEAK 45(20P12.1) WILD-TYPE" 
                    TCGA-BK-A0CC 
"DEL PEAK 45(20P12.1) WILD-TYPE" 
D94V3, multiclass
D94V4, multiclass
        clus
vv       DEL PEAK 45(20P12.1) CNV DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                       13                            133
  CLUS_2                        7                             82
  CLUS_3                        5                            150
D94V5, multiclass
D94V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 45(20P12.1) CNV          5    4
  DEL PEAK 45(20P12.1) WILD-TYPE   68  117
        clus
vv       DEL PEAK 45(20P12.1) CNV DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                        4                            117
  CLUS_2                        5                             68
D94V7, multiclass
        clus
vv       DEL PEAK 45(20P12.1) CNV DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                        7                             42
  CLUS_2                        2                             34
  CLUS_3                        5                             28
D94V8, multiclass
        clus
vv       DEL PEAK 45(20P12.1) CNV DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                        6                             40
  CLUS_2                        4                             32
  CLUS_3                        4                             32
D94V9, multiclass
D94V10, multiclass
        clus
vv       DEL PEAK 45(20P12.1) CNV DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                        2                             25
  CLUS_2                        8                            214
  CLUS_3                       21                            225
D94V11, multiclass
        clus
vv       DEL PEAK 45(20P12.1) CNV DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                       14                            155
  CLUS_2                        5                            110
  CLUS_3                        7                             81
D94V12, multiclass
        clus
vv       DEL PEAK 45(20P12.1) CNV DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                        7                             92
  CLUS_2                        6                            132
  CLUS_3                       10                            100
  CLUS_4                        3                             22

Clustering(95) Variable = Del Peak 46(22q12.1)
D95V1, multiclass
        clus
vv       DEL PEAK 46(22Q12.1) CNV DEL PEAK 46(22Q12.1) WILD-TYPE
  CLUS_1                        0                             14
  CLUS_2                        6                             11
  CLUS_3                        0                             12
  CLUS_4                        0                             10
D95V2, multiclass
        clus
vv       DEL PEAK 46(22Q12.1) CNV DEL PEAK 46(22Q12.1) WILD-TYPE
  CLUS_1                        0                             19
  CLUS_2                        0                             19
  CLUS_3                        6                              9
D95V3, multiclass
D95V4, multiclass
        clus
vv       DEL PEAK 46(22Q12.1) CNV DEL PEAK 46(22Q12.1) WILD-TYPE
  CLUS_1                       41                            105
  CLUS_2                       22                             67
  CLUS_3                       15                            140
D95V5, multiclass
D95V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 46(22Q12.1) CNV          6   13
  DEL PEAK 46(22Q12.1) WILD-TYPE   67  108
        clus
vv       DEL PEAK 46(22Q12.1) CNV DEL PEAK 46(22Q12.1) WILD-TYPE
  CLUS_1                       13                            108
  CLUS_2                        6                             67
D95V7, multiclass
        clus
vv       DEL PEAK 46(22Q12.1) CNV DEL PEAK 46(22Q12.1) WILD-TYPE
  CLUS_1                       20                             29
  CLUS_2                        6                             30
  CLUS_3                       10                             23
D95V8, multiclass
        clus
vv       DEL PEAK 46(22Q12.1) CNV DEL PEAK 46(22Q12.1) WILD-TYPE
  CLUS_1                       21                             25
  CLUS_2                        6                             30
  CLUS_3                        9                             27
D95V9, multiclass
D95V10, multiclass
        clus
vv       DEL PEAK 46(22Q12.1) CNV DEL PEAK 46(22Q12.1) WILD-TYPE
  CLUS_1                        6                             21
  CLUS_2                       21                            201
  CLUS_3                       60                            186
D95V11, multiclass
        clus
vv       DEL PEAK 46(22Q12.1) CNV DEL PEAK 46(22Q12.1) WILD-TYPE
  CLUS_1                       39                            130
  CLUS_2                       17                             98
  CLUS_3                       19                             69
D95V12, multiclass
        clus
vv       DEL PEAK 46(22Q12.1) CNV DEL PEAK 46(22Q12.1) WILD-TYPE
  CLUS_1                       20                             79
  CLUS_2                       20                            118
  CLUS_3                       31                             79
  CLUS_4                        4                             21

Clustering(96) Variable = Del Peak 47(22q13.31)
D96V1, multiclass
        clus
vv       DEL PEAK 47(22Q13.31) CNV DEL PEAK 47(22Q13.31) WILD-TYPE
  CLUS_1                         0                              14
  CLUS_2                        10                               7
  CLUS_3                         0                              12
  CLUS_4                         0                              10
D96V2, multiclass
        clus
vv       DEL PEAK 47(22Q13.31) CNV DEL PEAK 47(22Q13.31) WILD-TYPE
  CLUS_1                         0                              19
  CLUS_2                         0                              19
  CLUS_3                        10                               5
D96V3, multiclass
D96V4, multiclass
        clus
vv       DEL PEAK 47(22Q13.31) CNV DEL PEAK 47(22Q13.31) WILD-TYPE
  CLUS_1                        68                              78
  CLUS_2                        26                              63
  CLUS_3                        15                             140
D96V5, multiclass
D96V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 47(22Q13.31) CNV         15   15
  DEL PEAK 47(22Q13.31) WILD-TYPE   58  106
        clus
vv       DEL PEAK 47(22Q13.31) CNV DEL PEAK 47(22Q13.31) WILD-TYPE
  CLUS_1                        15                             106
  CLUS_2                        15                              58
D96V7, multiclass
        clus
vv       DEL PEAK 47(22Q13.31) CNV DEL PEAK 47(22Q13.31) WILD-TYPE
  CLUS_1                        29                              20
  CLUS_2                         7                              29
  CLUS_3                        12                              21
D96V8, multiclass
        clus
vv       DEL PEAK 47(22Q13.31) CNV DEL PEAK 47(22Q13.31) WILD-TYPE
  CLUS_1                        29                              17
  CLUS_2                         9                              27
  CLUS_3                        10                              26
D96V9, multiclass
D96V10, multiclass
        clus
vv       DEL PEAK 47(22Q13.31) CNV DEL PEAK 47(22Q13.31) WILD-TYPE
  CLUS_1                         6                              21
  CLUS_2                        22                             200
  CLUS_3                        93                             153
D96V11, multiclass
        clus
vv       DEL PEAK 47(22Q13.31) CNV DEL PEAK 47(22Q13.31) WILD-TYPE
  CLUS_1                        63                             106
  CLUS_2                        18                              97
  CLUS_3                        24                              64
D96V12, multiclass
        clus
vv       DEL PEAK 47(22Q13.31) CNV DEL PEAK 47(22Q13.31) WILD-TYPE
  CLUS_1                        30                              69
  CLUS_2                        21                             117
  CLUS_3                        50                              60
  CLUS_4                         4                              21

Clustering(97) Variable = Del Peak 48(22q13.32)
D97V1, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) CNV DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                         0                              14
  CLUS_2                         9                               8
  CLUS_3                         0                              12
  CLUS_4                         0                              10
D97V2, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) CNV DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                         0                              19
  CLUS_2                         0                              19
  CLUS_3                         9                               6
D97V3, multiclass
D97V4, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) CNV DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                        69                              77
  CLUS_2                        29                              60
  CLUS_3                        18                             137
D97V5, multiclass
D97V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 48(22Q13.32) CNV         17   16
  DEL PEAK 48(22Q13.32) WILD-TYPE   56  105
        clus
vv       DEL PEAK 48(22Q13.32) CNV DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                        16                             105
  CLUS_2                        17                              56
D97V7, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) CNV DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                        29                              20
  CLUS_2                         8                              28
  CLUS_3                        13                              20
D97V8, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) CNV DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                        30                              16
  CLUS_2                         9                              27
  CLUS_3                        11                              25
D97V9, multiclass
D97V10, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) CNV DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                         6                              21
  CLUS_2                        25                             197
  CLUS_3                        97                             149
D97V11, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) CNV DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                        67                             102
  CLUS_2                        21                              94
  CLUS_3                        24                              64
D97V12, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) CNV DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                        31                              68
  CLUS_2                        24                             114
  CLUS_3                        52                              58
  CLUS_4                         5                              20

Clustering(98) Variable = Del Peak 49(Xp21.1)
D98V1, multiclass
        clus
vv       DEL PEAK 49(XP21.1) CNV DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                       0                            14
  CLUS_2                       7                            10
  CLUS_3                       0                            12
  CLUS_4                       0                            10
D98V2, multiclass
        clus
vv       DEL PEAK 49(XP21.1) CNV DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                       0                            19
  CLUS_2                       0                            19
  CLUS_3                       7                             8
D98V3, multiclass
D98V4, multiclass
        clus
vv       DEL PEAK 49(XP21.1) CNV DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                      46                           100
  CLUS_2                      17                            72
  CLUS_3                       9                           146
D98V5, multiclass
D98V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 49(XP21.1) CNV         11   11
  DEL PEAK 49(XP21.1) WILD-TYPE   62  110
        clus
vv       DEL PEAK 49(XP21.1) CNV DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                      11                           110
  CLUS_2                      11                            62
D98V7, multiclass
        clus
vv       DEL PEAK 49(XP21.1) CNV DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                      25                            24
  CLUS_2                       5                            31
  CLUS_3                       6                            27
D98V8, multiclass
        clus
vv       DEL PEAK 49(XP21.1) CNV DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                      21                            25
  CLUS_2                      10                            26
  CLUS_3                       5                            31
D98V9, multiclass
D98V10, multiclass
        clus
vv       DEL PEAK 49(XP21.1) CNV DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                       7                            20
  CLUS_2                      12                           210
  CLUS_3                      63                           183
D98V11, multiclass
        clus
vv       DEL PEAK 49(XP21.1) CNV DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                      44                           125
  CLUS_2                      11                           104
  CLUS_3                      17                            71
D98V12, multiclass
        clus
vv       DEL PEAK 49(XP21.1) CNV DEL PEAK 49(XP21.1) WILD-TYPE
  CLUS_1                      21                            78
  CLUS_2                      12                           126
  CLUS_3                      36                            74
  CLUS_4                       3                            22
                           V1                            V2 
                  "MRNA_CNMF"          "MRNA_CHIERARCHICAL" 
                           V3                            V4 
                    "CN_CNMF"            "METHLYATION_CNMF" 
                           V5                            V6 
                  "RPPA_CNMF"          "RPPA_CHIERARCHICAL" 
                           V7                            V8 
               "MRNASEQ_CNMF"       "MRNASEQ_CHIERARCHICAL" 
                           V9                           V10 
                "MIRSEQ_CNMF"        "MIRSEQ_CHIERARCHICAL" 
                          V11                           V12 
         "MIRSEQ_MATURE_CNMF" "MIRSEQ_MATURE_CHIERARCHICAL" 
> q(save="no")
