
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/UCS-TP/4470343/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/UCS-TP/4402167/UCS-TP.clin.merged.picked.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=UCS-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oT=UCS-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/UCS-TP/4402167/UCS-TP.clin.merged.picked.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/UCS-TP/4470343/transformed.cor.cli.txt"

nPatients in clinical file=15, in cluster file=56, common to both=14
[1] "Reduce the number of clustering variables from 80 to 56."
[1] 56 14
[1] "1P GAIN MUTATION ANALYSIS"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                7                 7 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                7                 7 
[1] "1Q GAIN MUTATION ANALYSIS"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
                8                 6 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
                8                 6 
[1] "2P GAIN MUTATION ANALYSIS"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
                4                10 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
                4                10 
[1] "2Q GAIN MUTATION ANALYSIS"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                3                11 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                3                11 
[1] "3P GAIN MUTATION ANALYSIS"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                4                10 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                4                10 
[1] "3Q GAIN MUTATION ANALYSIS"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
                5                 9 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
                5                 9 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                3                11 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                3                11 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
                6                 8 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
                6                 8 
[1] "6P GAIN MUTATION ANALYSIS"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
                6                 8 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
                6                 8 
[1] "6Q GAIN MUTATION ANALYSIS"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                5                 9 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                5                 9 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
                4                10 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
                4                10 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
                6                 8 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
                6                 8 
[1] "10P GAIN MUTATION ANALYSIS"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 6                  8 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 6                  8 
[1] "10Q GAIN MUTATION ANALYSIS"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 5                  9 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 5                  9 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 3                 11 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 3                 11 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                 6                  8 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                 6                  8 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 3                 11 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 3                 11 
[1] "13Q GAIN MUTATION ANALYSIS"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 4                 10 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 4                 10 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 3                 11 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 3                 11 
[1] "17P GAIN MUTATION ANALYSIS"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 4                 10 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 4                 10 
[1] "17Q GAIN MUTATION ANALYSIS"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 6                  8 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 6                  8 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 4                 10 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 4                 10 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 6                  8 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 6                  8 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 7                  7 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 7                  7 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                 9                  5 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                 9                  5 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                11                  3 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                11                  3 
[1] "21Q GAIN MUTATION ANALYSIS"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 7                  7 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 7                  7 
[1] "XQ GAIN MUTATION ANALYSIS"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                4                10 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                4                10 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
                5                 9 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
                5                 9 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                4                10 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                4                10 
[1] "4P LOSS MUTATION ANALYSIS"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
                6                 8 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
                6                 8 
[1] "4Q LOSS MUTATION ANALYSIS"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
                8                 6 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
                8                 6 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                5                 9 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                5                 9 
[1] "7P LOSS MUTATION ANALYSIS"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                3                11 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                3                11 
[1] "7Q LOSS MUTATION ANALYSIS"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                4                10 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                4                10 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
                4                10 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
                4                10 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
                7                 7 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
                7                 7 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
                8                 6 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
                8                 6 
[1] "10P LOSS MUTATION ANALYSIS"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                 3                 11 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                 3                 11 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                 7                  7 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                 7                  7 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                 6                  8 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                 6                  8 
[1] "12P LOSS MUTATION ANALYSIS"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 5                  9 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 5                  9 
[1] "12Q LOSS MUTATION ANALYSIS"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 3                 11 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 3                 11 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                 6                  8 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                 6                  8 
[1] "14Q LOSS MUTATION ANALYSIS"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                 9                  5 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                 9                  5 
[1] "15Q LOSS MUTATION ANALYSIS"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                 9                  5 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                 9                  5 
[1] "16P LOSS MUTATION ANALYSIS"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 7                  7 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 7                  7 
[1] "16Q LOSS MUTATION ANALYSIS"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                 9                  5 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                 9                  5 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                 6                  8 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                 6                  8 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                 4                 10 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                 4                 10 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                 3                 11 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                 3                 11 
[1] "19P LOSS MUTATION ANALYSIS"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 4                 10 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 4                 10 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 4                 10 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 4                 10 
[1] "21Q LOSS MUTATION ANALYSIS"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                 5                  9 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                 5                  9 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                 8                  6 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                 8                  6 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                3                11 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                3                11 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "NEOPLASM.DISEASESTAGE"                 
 [6] "PATHOLOGY.T.STAGE"                     
 [7] "PATHOLOGY.N.STAGE"                     
 [8] "PATHOLOGY.M.STAGE"                     
 [9] "DCCUPLOADDATE"                         
[10] "GENDER"                                
[11] "RADIATIONTHERAPY"                      
[12] "RADIATIONS.RADIATION.REGIMENINDICATION"
[13] "BATCHNUMBER"                           

Input Data has 13 rows and 14 columns.

[1] "Batch" "13"   
[1] "Last Follow UP"
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN 
        2118         1816           NA           NA          497          424 
TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-ND-A4W6 TCGA-ND-A4WA 
         438          219          145          295           NA           NA 
TCGA-ND-A4WC TCGA-ND-A4WF 
         461           NA 
Variable 1:'AGE':	nDistinctValues=14,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=5,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=9,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'NEOPLASM.DISEASESTAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PATHOLOGY.T.STAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'PATHOLOGY.N.STAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 8:'PATHOLOGY.M.STAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'GENDER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 13:'BATCH.NUMBER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 14 columns, 1 survival variables, and 1 non-survival variables.
AGE, nv=14, binary=FALSE, numeric=TRUE

Clustering(1) Variable = 1P GAIN MUTATION ANALYSIS
D1V1, survival
                   sevent
clus2               0 1
  1P GAIN MUTATED   5 2
  1P GAIN WILD-TYPE 4 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                7                 7 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                2                 3 
$`1P GAIN MUTATED`
TCGA-N5-A4RV TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP 
       59.70        13.71        16.34        13.94        14.40         7.20 
TCGA-ND-A4W6 
       10.42 

$`1P GAIN WILD-TYPE`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PQ TCGA-N8-A56S TCGA-ND-A4WA TCGA-ND-A4WC 
       69.63        14.63         4.77         9.70        23.47        15.16 
TCGA-ND-A4WF 
        5.49 

  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             7.20              4.77 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
            59.70             69.63 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
            13.94             14.63 
[1] "7.2 - 59.7 (13.9)" "4.8 - 69.6 (14.6)"
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
  "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
  "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
  "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D1V2, continuous

Clustering(2) Variable = 1Q GAIN MUTATION ANALYSIS
D2V1, survival
                   sevent
clus2               0 1
  1Q GAIN MUTATED   6 2
  1Q GAIN WILD-TYPE 3 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
                8                 6 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
                2                 3 
$`1Q GAIN MUTATED`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO 
       69.63        59.70        13.71        16.34        13.94        14.40 
TCGA-N8-A4PP TCGA-ND-A4W6 
        7.20        10.42 

$`1Q GAIN WILD-TYPE`
TCGA-N8-A4PI TCGA-N8-A4PQ TCGA-N8-A56S TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
       14.63         4.77         9.70        23.47        15.16         5.49 

  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
             7.20              4.77 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
            69.63             23.47 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
           14.170            12.165 
[1] "7.2 - 69.6 (14.2)" "4.8 - 23.5 (12.2)"
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
[1] "hr=" "2.6"
D2V2, continuous

Clustering(3) Variable = 2P GAIN MUTATION ANALYSIS
D3V1, survival
                   sevent
clus2               0 1
  2P GAIN MUTATED   1 3
  2P GAIN WILD-TYPE 8 2
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
                4                10 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
                3                 2 
$`2P GAIN MUTATED`
TCGA-N8-A4PL TCGA-N8-A56S TCGA-ND-A4W6 TCGA-ND-A4WA 
       13.71         9.70        10.42        23.47 

$`2P GAIN WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO 
       69.63        59.70        14.63        16.34        13.94        14.40 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-ND-A4WC TCGA-ND-A4WF 
        7.20         4.77        15.16         5.49 

  2P GAIN MUTATED 2P GAIN WILD-TYPE 
             9.70              4.77 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
            23.47             69.63 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
           12.065            14.515 
[1] "9.7 - 23.5 (12.1)" "4.8 - 69.6 (14.5)"
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
[1] "hr=" "4.3"
D3V2, continuous

Clustering(4) Variable = 2Q GAIN MUTATION ANALYSIS
D4V1, survival
                   sevent
clus2               0 1
  2Q GAIN MUTATED   1 2
  2Q GAIN WILD-TYPE 8 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                3                11 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                2                 3 
$`2Q GAIN MUTATED`
TCGA-N8-A4PL TCGA-N8-A56S TCGA-ND-A4WA 
       13.71         9.70        23.47 

$`2Q GAIN WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO 
       69.63        59.70        14.63        16.34        13.94        14.40 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-ND-A4WF 
        7.20         4.77        10.42        15.16         5.49 

  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
             9.70              4.77 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
            23.47             69.63 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
            13.71             14.40 
[1] "9.7 - 23.5 (13.7)" "4.8 - 69.6 (14.4)"
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
[1] "hr=" "2.3"
D4V2, continuous

Clustering(5) Variable = 3P GAIN MUTATION ANALYSIS
D5V1, survival
                   sevent
clus2               0 1
  3P GAIN MUTATED   2 2
  3P GAIN WILD-TYPE 7 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                4                10 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                2                 3 
$`3P GAIN MUTATED`
TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WA 
       13.94         4.77        10.42        23.47 

$`3P GAIN WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PO 
       69.63        59.70        14.63        13.71        16.34        14.40 
TCGA-N8-A4PP TCGA-N8-A56S TCGA-ND-A4WC TCGA-ND-A4WF 
        7.20         9.70        15.16         5.49 

  3P GAIN MUTATED 3P GAIN WILD-TYPE 
             4.77              5.49 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
            23.47             69.63 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
           12.180            14.515 
[1] "4.8 - 23.5 (12.2)" "5.5 - 69.6 (14.5)"
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
[1] "hr=" "2"  
D5V2, continuous

Clustering(6) Variable = 3Q GAIN MUTATION ANALYSIS
D6V1, survival
                   sevent
clus2               0 1
  3Q GAIN MUTATED   3 2
  3Q GAIN WILD-TYPE 6 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
                5                 9 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
                2                 3 
$`3Q GAIN MUTATED`
TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WA 
       13.94         7.20         4.77        10.42        23.47 

$`3Q GAIN WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PO 
       69.63        59.70        14.63        13.71        16.34        14.40 
TCGA-N8-A56S TCGA-ND-A4WC TCGA-ND-A4WF 
        9.70        15.16         5.49 

  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
             4.77              5.49 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
            23.47             69.63 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
            10.42             14.63 
[1] "4.8 - 23.5 (10.4)" "5.5 - 69.6 (14.6)"
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
[1] "hr=" "1.9"
D6V2, continuous

Clustering(7) Variable = 4P GAIN MUTATION ANALYSIS
D7V1, survival
                   sevent
clus2               0 1
  4P GAIN MUTATED   2 1
  4P GAIN WILD-TYPE 7 4
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                3                11 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                1                 4 
$`4P GAIN MUTATED`
TCGA-N5-A4RV TCGA-N8-A4PP TCGA-ND-A4W6 
       59.70         7.20        10.42 

$`4P GAIN WILD-TYPE`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO 
       69.63        14.63        13.71        16.34        13.94        14.40 
TCGA-N8-A4PQ TCGA-N8-A56S TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
        4.77         9.70        23.47        15.16         5.49 

  4P GAIN MUTATED 4P GAIN WILD-TYPE 
             7.20              4.77 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
            59.70             69.63 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
            10.42             14.40 
[1] "7.2 - 59.7 (10.4)" "4.8 - 69.6 (14.4)"
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D7V2, continuous

Clustering(8) Variable = 5P GAIN MUTATION ANALYSIS
D8V1, survival
                   sevent
clus2               0 1
  5P GAIN MUTATED   5 1
  5P GAIN WILD-TYPE 4 4
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
                6                 8 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
                1                 4 
$`5P GAIN MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-ND-A4W6 
       69.63        13.94        14.40         7.20         4.77        10.42 

$`5P GAIN WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A56S TCGA-ND-A4WA 
       59.70        14.63        13.71        16.34         9.70        23.47 
TCGA-ND-A4WC TCGA-ND-A4WF 
       15.16         5.49 

  5P GAIN MUTATED 5P GAIN WILD-TYPE 
             4.77              5.49 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
            69.63             59.70 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
           12.180            14.895 
[1] "4.8 - 69.6 (12.2)" "5.5 - 59.7 (14.9)"
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
[1] "hr=" "1.9"
D8V2, continuous

Clustering(9) Variable = 6P GAIN MUTATION ANALYSIS
D9V1, survival
                   sevent
clus2               0 1
  6P GAIN MUTATED   3 3
  6P GAIN WILD-TYPE 6 2
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
                6                 8 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
                3                 2 
$`6P GAIN MUTATED`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PL TCGA-N8-A4PO TCGA-ND-A4WA TCGA-ND-A4WF 
       69.63        59.70        13.71        14.40        23.47         5.49 

$`6P GAIN WILD-TYPE`
TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S 
       14.63        16.34        13.94         7.20         4.77         9.70 
TCGA-ND-A4W6 TCGA-ND-A4WC 
       10.42        15.16 

  6P GAIN MUTATED 6P GAIN WILD-TYPE 
             5.49              4.77 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
            69.63             16.34 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
           18.935            12.180 
[1] "5.5 - 69.6 (18.9)" "4.8 - 16.3 (12.2)"
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
[1] "hr=" "1"  
D9V2, continuous

Clustering(10) Variable = 6Q GAIN MUTATION ANALYSIS
D10V1, survival
                   sevent
clus2               0 1
  6Q GAIN MUTATED   3 2
  6Q GAIN WILD-TYPE 6 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                5                 9 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                2                 3 
$`6Q GAIN MUTATED`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PO TCGA-ND-A4WA TCGA-ND-A4WF 
       69.63        59.70        14.40        23.47         5.49 

$`6Q GAIN WILD-TYPE`
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ 
       14.63        13.71        16.34        13.94         7.20         4.77 
TCGA-N8-A56S TCGA-ND-A4W6 TCGA-ND-A4WC 
        9.70        10.42        15.16 

  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
             5.49              4.77 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
            69.63             16.34 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
            23.47             13.71 
[1] "5.5 - 69.6 (23.5)" "4.8 - 16.3 (13.7)"
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
[1] "hr=" "2.3"
D10V2, continuous

Clustering(11) Variable = 8P GAIN MUTATION ANALYSIS
D11V1, survival
                   sevent
clus2               0 1
  8P GAIN MUTATED   1 3
  8P GAIN WILD-TYPE 8 2
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
                4                10 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
                3                 2 
$`8P GAIN MUTATED`
TCGA-N8-A4PI TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WA 
       14.63         4.77        10.42        23.47 

$`8P GAIN WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO 
       69.63        59.70        13.71        16.34        13.94        14.40 
TCGA-N8-A4PP TCGA-N8-A56S TCGA-ND-A4WC TCGA-ND-A4WF 
        7.20         9.70        15.16         5.49 

  8P GAIN MUTATED 8P GAIN WILD-TYPE 
             4.77              5.49 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
            23.47             69.63 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
           12.525            14.170 
[1] "4.8 - 23.5 (12.5)" "5.5 - 69.6 (14.2)"
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
[1] "hr=" "3.9"
D11V2, continuous

Clustering(12) Variable = 8Q GAIN MUTATION ANALYSIS
D12V1, survival
                   sevent
clus2               0 1
  8Q GAIN MUTATED   3 3
  8Q GAIN WILD-TYPE 6 2
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
                6                 8 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
                3                 2 
$`8Q GAIN MUTATED`
TCGA-N8-A4PI TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WA 
       14.63        14.40         7.20         4.77        10.42        23.47 

$`8Q GAIN WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A56S 
       69.63        59.70        13.71        16.34        13.94         9.70 
TCGA-ND-A4WC TCGA-ND-A4WF 
       15.16         5.49 

  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
             4.77              5.49 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
            23.47             69.63 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
            12.41             14.55 
[1] "4.8 - 23.5 (12.4)" "5.5 - 69.6 (14.6)"
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
[1] "hr=" "2.7"
D12V2, continuous

Clustering(13) Variable = 10P GAIN MUTATION ANALYSIS
D13V1, survival
                    sevent
clus2                0 1
  10P GAIN MUTATED   3 3
  10P GAIN WILD-TYPE 6 2
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 6                  8 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 3                  2 
$`10P GAIN MUTATED`
TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WA 
       13.71        13.94         7.20         4.77        10.42        23.47 

$`10P GAIN WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A56S 
       69.63        59.70        14.63        16.34        14.40         9.70 
TCGA-ND-A4WC TCGA-ND-A4WF 
       15.16         5.49 

  10P GAIN MUTATED 10P GAIN WILD-TYPE 
              4.77               5.49 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
             23.47              69.63 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
            12.065             14.895 
[1] "4.8 - 23.5 (12.1)" "5.5 - 69.6 (14.9)"
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
[1] "hr=" "3.3"
D13V2, continuous

Clustering(14) Variable = 10Q GAIN MUTATION ANALYSIS
D14V1, survival
                    sevent
clus2                0 1
  10Q GAIN MUTATED   3 2
  10Q GAIN WILD-TYPE 6 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 5                  9 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 2                  3 
$`10Q GAIN MUTATED`
TCGA-N5-A4RV TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-ND-A4WA 
       59.70        13.71        13.94         4.77        23.47 

$`10Q GAIN WILD-TYPE`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S 
       69.63        14.63        16.34        14.40         7.20         9.70 
TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-ND-A4WF 
       10.42        15.16         5.49 

  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
              4.77               5.49 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
             59.70              69.63 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
             13.94              14.40 
[1] "4.8 - 59.7 (13.9)" "5.5 - 69.6 (14.4)"
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D14V2, continuous

Clustering(15) Variable = 11Q GAIN MUTATION ANALYSIS
D15V1, survival
                    sevent
clus2                0 1
  11Q GAIN MUTATED   3 0
  11Q GAIN WILD-TYPE 6 5
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 3                 11 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 0                  5 
$`11Q GAIN MUTATED`
TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A56S 
       13.94         7.20         9.70 

$`11Q GAIN WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PO 
       69.63        59.70        14.63        13.71        16.34        14.40 
TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
        4.77        10.42        23.47        15.16         5.49 

  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
              7.20               4.77 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
             13.94              69.63 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
              9.70              14.63 
[1] "7.2 - 13.9 (9.7)"  "4.8 - 69.6 (14.6)"
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
[1] "hr="     "2.4e+08"
D15V2, continuous

Clustering(16) Variable = 12P GAIN MUTATION ANALYSIS
D16V1, survival
                    sevent
clus2                0 1
  12P GAIN MUTATED   3 3
  12P GAIN WILD-TYPE 6 2
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                 6                  8 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                 3                  2 
$`12P GAIN MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A56S TCGA-ND-A4W6 TCGA-ND-A4WF 
       69.63        13.71        16.34         9.70        10.42         5.49 

$`12P GAIN WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ 
       59.70        14.63        13.94        14.40         7.20         4.77 
TCGA-ND-A4WA TCGA-ND-A4WC 
       23.47        15.16 

  12P GAIN MUTATED 12P GAIN WILD-TYPE 
              5.49               4.77 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
             69.63              59.70 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
            12.065             14.515 
[1] "5.5 - 69.6 (12.1)" "4.8 - 59.7 (14.5)"
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
[1] "hr=" "2.6"
D16V2, continuous

Clustering(17) Variable = 12Q GAIN MUTATION ANALYSIS
D17V1, survival
                    sevent
clus2                0 1
  12Q GAIN MUTATED   3 0
  12Q GAIN WILD-TYPE 6 5
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 3                 11 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 0                  5 
$`12Q GAIN MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PM TCGA-N8-A56S 
       69.63        16.34         9.70 

$`12Q GAIN WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP 
       59.70        14.63        13.71        13.94        14.40         7.20 
TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
        4.77        10.42        23.47        15.16         5.49 

  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
              9.70               4.77 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
             69.63              59.70 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
             16.34              13.94 
[1] "9.7 - 69.6 (16.3)" "4.8 - 59.7 (13.9)"
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
[1] "hr="     "8.3e+08"
D17V2, continuous

Clustering(18) Variable = 13Q GAIN MUTATION ANALYSIS
D18V1, survival
                    sevent
clus2                0 1
  13Q GAIN MUTATED   1 3
  13Q GAIN WILD-TYPE 8 2
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 4                 10 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 3                  2 
$`13Q GAIN MUTATED`
TCGA-N8-A4PL TCGA-N8-A4PN TCGA-ND-A4W6 TCGA-ND-A4WA 
       13.71        13.94        10.42        23.47 

$`13Q GAIN WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP 
       69.63        59.70        14.63        16.34        14.40         7.20 
TCGA-N8-A4PQ TCGA-N8-A56S TCGA-ND-A4WC TCGA-ND-A4WF 
        4.77         9.70        15.16         5.49 

  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             10.42               4.77 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             23.47              69.63 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
            13.825             14.515 
[1] "10.4 - 23.5 (13.8)" "4.8 - 69.6 (14.5)" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED"   "13Q GAIN MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED"   "13Q GAIN MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED"   "13Q GAIN MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
[1] "hr=" "3.5"
D18V2, continuous

Clustering(19) Variable = 16P GAIN MUTATION ANALYSIS
D19V1, survival
                    sevent
clus2                0 1
  16P GAIN MUTATED   3 0
  16P GAIN WILD-TYPE 6 5
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 3                 11 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 0                  5 
$`16P GAIN MUTATED`
TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A56S 
       13.94        14.40         9.70 

$`16P GAIN WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PP 
       69.63        59.70        14.63        13.71        16.34         7.20 
TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
        4.77        10.42        23.47        15.16         5.49 

  16P GAIN MUTATED 16P GAIN WILD-TYPE 
              9.70               4.77 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
             14.40              69.63 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
             13.94              14.63 
[1] "9.7 - 14.4 (13.9)" "4.8 - 69.6 (14.6)"
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
[1] "hr="     "2.7e+08"
D19V2, continuous

Clustering(20) Variable = 17P GAIN MUTATION ANALYSIS
D20V1, survival
                    sevent
clus2                0 1
  17P GAIN MUTATED   2 2
  17P GAIN WILD-TYPE 7 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 4                 10 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 2                  3 
$`17P GAIN MUTATED`
TCGA-N5-A4RV TCGA-N8-A4PL TCGA-N8-A4PN TCGA-ND-A4W6 
       59.70        13.71        13.94        10.42 

$`17P GAIN WILD-TYPE`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ 
       69.63        14.63        16.34        14.40         7.20         4.77 
TCGA-N8-A56S TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
        9.70        23.47        15.16         5.49 

  17P GAIN MUTATED 17P GAIN WILD-TYPE 
             10.42               4.77 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
             59.70              69.63 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
            13.825             14.515 
[1] "10.4 - 59.7 (13.8)" "4.8 - 69.6 (14.5)" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D20V2, continuous

Clustering(21) Variable = 17Q GAIN MUTATION ANALYSIS
D21V1, survival
                    sevent
clus2                0 1
  17Q GAIN MUTATED   3 3
  17Q GAIN WILD-TYPE 6 2
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 6                  8 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 3                  2 
$`17Q GAIN MUTATED`
TCGA-N5-A4RV TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-ND-A4W6 TCGA-ND-A4WA 
       59.70        13.71        16.34        13.94        10.42        23.47 

$`17Q GAIN WILD-TYPE`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S 
       69.63        14.63        14.40         7.20         4.77         9.70 
TCGA-ND-A4WC TCGA-ND-A4WF 
       15.16         5.49 

  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
             10.42               4.77 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
             59.70              69.63 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
             15.14              12.05 
[1] "10.4 - 59.7 (15.1)" "4.8 - 69.6 (12.1)" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D21V2, continuous

Clustering(22) Variable = 18P GAIN MUTATION ANALYSIS
D22V1, survival
                    sevent
clus2                0 1
  18P GAIN MUTATED   3 1
  18P GAIN WILD-TYPE 6 4
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 4                 10 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 1                  4 
$`18P GAIN MUTATED`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PO TCGA-ND-A4WF 
       69.63        59.70        14.40         5.49 

$`18P GAIN WILD-TYPE`
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ 
       14.63        13.71        16.34        13.94         7.20         4.77 
TCGA-N8-A56S TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC 
        9.70        10.42        23.47        15.16 

  18P GAIN MUTATED 18P GAIN WILD-TYPE 
              5.49               4.77 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
             69.63              23.47 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
            37.050             13.825 
[1] "5.5 - 69.6 (37.1)" "4.8 - 23.5 (13.8)"
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
[1] "hr=" "2.8"
D22V2, continuous

Clustering(23) Variable = 19P GAIN MUTATION ANALYSIS
D23V1, survival
                    sevent
clus2                0 1
  19P GAIN MUTATED   4 2
  19P GAIN WILD-TYPE 5 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 6                  8 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 2                  3 
$`19P GAIN MUTATED`
TCGA-N5-A4RV TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WA 
       59.70        14.40         7.20         4.77        10.42        23.47 

$`19P GAIN WILD-TYPE`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A56S 
       69.63        14.63        13.71        16.34        13.94         9.70 
TCGA-ND-A4WC TCGA-ND-A4WF 
       15.16         5.49 

  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              4.77               5.49 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
             59.70              69.63 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
            12.410             14.285 
[1] "4.8 - 59.7 (12.4)" "5.5 - 69.6 (14.3)"
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D23V2, continuous

Clustering(24) Variable = 19Q GAIN MUTATION ANALYSIS
D24V1, survival
                    sevent
clus2                0 1
  19Q GAIN MUTATED   4 3
  19Q GAIN WILD-TYPE 5 2
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 7                  7 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 3                  2 
$`19Q GAIN MUTATED`
TCGA-N5-A4RV TCGA-N8-A4PL TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-ND-A4W6 
       59.70        13.71        14.40         7.20         4.77        10.42 
TCGA-ND-A4WA 
       23.47 

$`19Q GAIN WILD-TYPE`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A56S TCGA-ND-A4WC 
       69.63        14.63        16.34        13.94         9.70        15.16 
TCGA-ND-A4WF 
        5.49 

  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
              4.77               5.49 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
             59.70              69.63 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
             13.71              14.63 
[1] "4.8 - 59.7 (13.7)" "5.5 - 69.6 (14.6)"
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
[1] "hr=" "1.7"
D24V2, continuous

Clustering(25) Variable = 20P GAIN MUTATION ANALYSIS
D25V1, survival
                    sevent
clus2                0 1
  20P GAIN MUTATED   5 4
  20P GAIN WILD-TYPE 4 1
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                 9                  5 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                 4                  1 
$`20P GAIN MUTATED`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO 
       69.63        59.70        13.71        16.34        13.94        14.40 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF 
       10.42        23.47         5.49 

$`20P GAIN WILD-TYPE`
TCGA-N8-A4PI TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-ND-A4WC 
       14.63         7.20         4.77         9.70        15.16 

  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              5.49               4.77 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
             69.63              15.16 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              14.4                9.7 
[1] "5.5 - 69.6 (14.4)" "4.8 - 15.2 (9.7)" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
[1] "hr=" "1.1"
D25V2, continuous

Clustering(26) Variable = 20Q GAIN MUTATION ANALYSIS
D26V1, survival
                    sevent
clus2                0 1
  20Q GAIN MUTATED   6 5
  20Q GAIN WILD-TYPE 3 0
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                11                  3 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                 5                  0 
$`20Q GAIN MUTATED`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN 
       69.63        59.70        14.63        13.71        16.34        13.94 
TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF 
       14.40         4.77        10.42        23.47         5.49 

$`20Q GAIN WILD-TYPE`
TCGA-N8-A4PP TCGA-N8-A56S TCGA-ND-A4WC 
        7.20         9.70        15.16 

  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
              4.77               7.20 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
             69.63              15.16 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
              14.4                9.7 
[1] "4.8 - 69.6 (14.4)" "7.2 - 15.2 (9.7)" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
[1] "hr="     "2.4e+08"
D26V2, continuous

Clustering(27) Variable = 21Q GAIN MUTATION ANALYSIS
D27V1, survival
                    sevent
clus2                0 1
  21Q GAIN MUTATED   5 2
  21Q GAIN WILD-TYPE 4 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 7                  7 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 2                  3 
$`21Q GAIN MUTATED`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-ND-A4W6 
       69.63        59.70        13.94        14.40         4.77        10.42 
TCGA-ND-A4WF 
        5.49 

$`21Q GAIN WILD-TYPE`
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PP TCGA-N8-A56S TCGA-ND-A4WA 
       14.63        13.71        16.34         7.20         9.70        23.47 
TCGA-ND-A4WC 
       15.16 

  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
              4.77               7.20 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
             69.63              23.47 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
             13.94              14.63 
[1] "4.8 - 69.6 (13.9)" "7.2 - 23.5 (14.6)"
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
[1] "hr=" "1.4"
D27V2, continuous

Clustering(28) Variable = XQ GAIN MUTATION ANALYSIS
D28V1, survival
                   sevent
clus2               0 1
  XQ GAIN MUTATED   2 2
  XQ GAIN WILD-TYPE 7 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                4                10 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                2                 3 
$`XQ GAIN MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PO TCGA-ND-A4WA 
       69.63        14.63        14.40        23.47 

$`XQ GAIN WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ 
       59.70        13.71        16.34        13.94         7.20         4.77 
TCGA-N8-A56S TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-ND-A4WF 
        9.70        10.42        15.16         5.49 

  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
            14.40              4.77 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
            69.63             59.70 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
           19.050            12.065 
[1] "14.4 - 69.6 (19.1)" "4.8 - 59.7 (12.1)" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D28V2, continuous

Clustering(29) Variable = 3P LOSS MUTATION ANALYSIS
D29V1, survival
                   sevent
clus2               0 1
  3P LOSS MUTATED   3 2
  3P LOSS WILD-TYPE 6 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
                5                 9 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
                2                 3 
$`3P LOSS MUTATED`
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S 
       14.63        13.71        14.40         7.20         9.70 

$`3P LOSS WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-ND-A4W6 
       69.63        59.70        16.34        13.94         4.77        10.42 
TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
       23.47        15.16         5.49 

  3P LOSS MUTATED 3P LOSS WILD-TYPE 
             7.20              4.77 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
            14.63             69.63 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
            13.71             15.16 
[1] "7.2 - 14.6 (13.7)" "4.8 - 69.6 (15.2)"
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
[1] "hr=" "2.5"
D29V2, continuous

Clustering(30) Variable = 3Q LOSS MUTATION ANALYSIS
D30V1, survival
                   sevent
clus2               0 1
  3Q LOSS MUTATED   2 2
  3Q LOSS WILD-TYPE 7 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                4                10 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                2                 3 
$`3Q LOSS MUTATED`
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PO TCGA-N8-A56S 
       14.63        13.71        14.40         9.70 

$`3Q LOSS WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ 
       69.63        59.70        16.34        13.94         7.20         4.77 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
       10.42        23.47        15.16         5.49 

  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
             9.70              4.77 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
            14.63             69.63 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
           14.055            14.550 
[1] "9.7 - 14.6 (14.1)" "4.8 - 69.6 (14.6)"
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
[1] "hr=" "2.7"
D30V2, continuous

Clustering(31) Variable = 4P LOSS MUTATION ANALYSIS
D31V1, survival
                   sevent
clus2               0 1
  4P LOSS MUTATED   3 3
  4P LOSS WILD-TYPE 6 2
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
                6                 8 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
                3                 2 
$`4P LOSS MUTATED`
TCGA-N8-A4PL TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-N8-A56S TCGA-ND-A4WA TCGA-ND-A4WF 
       13.71        14.40         4.77         9.70        23.47         5.49 

$`4P LOSS WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PP 
       69.63        59.70        14.63        16.34        13.94         7.20 
TCGA-ND-A4W6 TCGA-ND-A4WC 
       10.42        15.16 

  4P LOSS MUTATED 4P LOSS WILD-TYPE 
             4.77              7.20 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
            23.47             69.63 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
           11.705            14.895 
[1] "4.8 - 23.5 (11.7)" "7.2 - 69.6 (14.9)"
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
[1] "hr=" "3.6"
D31V2, continuous

Clustering(32) Variable = 4Q LOSS MUTATION ANALYSIS
D32V1, survival
                   sevent
clus2               0 1
  4Q LOSS MUTATED   4 4
  4Q LOSS WILD-TYPE 5 1
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
                8                 6 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
                4                 1 
$`4Q LOSS MUTATED`
TCGA-N8-A4PL TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-ND-A4W6 
       13.71        14.40         7.20         4.77         9.70        10.42 
TCGA-ND-A4WA TCGA-ND-A4WF 
       23.47         5.49 

$`4Q LOSS WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PN TCGA-ND-A4WC 
       69.63        59.70        14.63        16.34        13.94        15.16 

  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
             4.77             13.94 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
            23.47             69.63 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
            10.06             15.75 
[1] "4.8 - 23.5 (10.1)"  "13.9 - 69.6 (15.8)"
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
[1] "hr=" "8.4"
D32V2, continuous

Clustering(33) Variable = 5Q LOSS MUTATION ANALYSIS
D33V1, survival
                   sevent
clus2               0 1
  5Q LOSS MUTATED   4 1
  5Q LOSS WILD-TYPE 5 4
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                5                 9 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                1                 4 
$`5Q LOSS MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP TCGA-ND-A4WA 
       69.63        16.34        14.40         7.20        23.47 

$`5Q LOSS WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-N8-A56S 
       59.70        14.63        13.71        13.94         4.77         9.70 
TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-ND-A4WF 
       10.42        15.16         5.49 

  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
             7.20              4.77 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
            69.63             59.70 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
            16.34             13.71 
[1] "7.2 - 69.6 (16.3)" "4.8 - 59.7 (13.7)"
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
[1] "hr=" "3.9"
D33V2, continuous

Clustering(34) Variable = 7P LOSS MUTATION ANALYSIS
D34V1, survival
                   sevent
clus2               0 1
  7P LOSS MUTATED   3 0
  7P LOSS WILD-TYPE 6 5
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                3                11 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                0                 5 
$`7P LOSS MUTATED`
TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PQ 
       16.34        14.40         4.77 

$`7P LOSS WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PP 
       69.63        59.70        14.63        13.71        13.94         7.20 
TCGA-N8-A56S TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
        9.70        10.42        23.47        15.16         5.49 

  7P LOSS MUTATED 7P LOSS WILD-TYPE 
             4.77              5.49 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            16.34             69.63 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            14.40             13.94 
[1] "4.8 - 16.3 (14.4)" "5.5 - 69.6 (13.9)"
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
[1] "hr="     "2.5e+08"
D34V2, continuous

Clustering(35) Variable = 7Q LOSS MUTATION ANALYSIS
D35V1, survival
                   sevent
clus2               0 1
  7Q LOSS MUTATED   3 1
  7Q LOSS WILD-TYPE 6 4
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                4                10 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                1                 4 
$`7Q LOSS MUTATED`
TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-ND-A4W6 
       16.34        14.40         4.77        10.42 

$`7Q LOSS WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PP 
       69.63        59.70        14.63        13.71        13.94         7.20 
TCGA-N8-A56S TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
        9.70        23.47        15.16         5.49 

  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
             4.77              5.49 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
            16.34             69.63 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
           12.410            14.285 
[1] "4.8 - 16.3 (12.4)" "5.5 - 69.6 (14.3)"
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D35V2, continuous

Clustering(36) Variable = 8P LOSS MUTATION ANALYSIS
D36V1, survival
                   sevent
clus2               0 1
  8P LOSS MUTATED   4 0
  8P LOSS WILD-TYPE 5 5
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
                4                10 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
                0                 5 
$`8P LOSS MUTATED`
TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S 
       13.94        14.40         7.20         9.70 

$`8P LOSS WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PQ 
       69.63        59.70        14.63        13.71        16.34         4.77 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
       10.42        23.47        15.16         5.49 

  8P LOSS MUTATED 8P LOSS WILD-TYPE 
             7.20              4.77 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
            14.40             69.63 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
           11.820            14.895 
[1] "7.2 - 14.4 (11.8)" "4.8 - 69.6 (14.9)"
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
[1] "hr="     "2.9e+08"
D36V2, continuous

Clustering(37) Variable = 9P LOSS MUTATION ANALYSIS
D37V1, survival
                   sevent
clus2               0 1
  9P LOSS MUTATED   6 1
  9P LOSS WILD-TYPE 3 4
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
                7                 7 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
                1                 4 
$`9P LOSS MUTATED`
TCGA-N5-A4RV TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-N8-A56S 
       59.70        16.34        13.94        14.40         4.77         9.70 
TCGA-ND-A4WA 
       23.47 

$`9P LOSS WILD-TYPE`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PP TCGA-ND-A4W6 TCGA-ND-A4WC 
       69.63        14.63        13.71         7.20        10.42        15.16 
TCGA-ND-A4WF 
        5.49 

  9P LOSS MUTATED 9P LOSS WILD-TYPE 
             4.77              5.49 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
            59.70             69.63 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
            14.40             13.71 
[1] "4.8 - 59.7 (14.4)" "5.5 - 69.6 (13.7)"
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
[1] "hr=" "4.8"
D37V2, continuous

Clustering(38) Variable = 9Q LOSS MUTATION ANALYSIS
D38V1, survival
                   sevent
clus2               0 1
  9Q LOSS MUTATED   6 2
  9Q LOSS WILD-TYPE 3 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
                8                 6 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
                2                 3 
$`9Q LOSS MUTATED`
TCGA-N5-A4RV TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-N8-A56S 
       59.70        16.34        13.94        14.40         4.77         9.70 
TCGA-ND-A4W6 TCGA-ND-A4WA 
       10.42        23.47 

$`9Q LOSS WILD-TYPE`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PP TCGA-ND-A4WC TCGA-ND-A4WF 
       69.63        14.63        13.71         7.20        15.16         5.49 

  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
             4.77              5.49 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
            59.70             69.63 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
            14.17             14.17 
[1] "4.8 - 59.7 (14.2)" "5.5 - 69.6 (14.2)"
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
[1] "hr=" "2"  
D38V2, continuous

Clustering(39) Variable = 10P LOSS MUTATION ANALYSIS
D39V1, survival
                    sevent
clus2                0 1
  10P LOSS MUTATED   3 0
  10P LOSS WILD-TYPE 6 5
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                 3                 11 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                 0                  5 
$`10P LOSS MUTATED`
TCGA-N5-A4RV TCGA-N8-A4PM TCGA-N8-A4PO 
       59.70        16.34        14.40 

$`10P LOSS WILD-TYPE`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ 
       69.63        14.63        13.71        13.94         7.20         4.77 
TCGA-N8-A56S TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
        9.70        10.42        23.47        15.16         5.49 

  10P LOSS MUTATED 10P LOSS WILD-TYPE 
             14.40               4.77 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
             59.70              69.63 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
             16.34              13.71 
[1] "14.4 - 59.7 (16.3)" "4.8 - 69.6 (13.7)" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
[1] "hr="   "9e+08"
D39V2, continuous

Clustering(40) Variable = 11P LOSS MUTATION ANALYSIS
D40V1, survival
                    sevent
clus2                0 1
  11P LOSS MUTATED   2 5
  11P LOSS WILD-TYPE 7 0
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                 7                  7 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                 5                  0 
$`11P LOSS MUTATED`
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A56S TCGA-ND-A4W6 TCGA-ND-A4WA 
       14.63        13.71        16.34         9.70        10.42        23.47 
TCGA-ND-A4WF 
        5.49 

$`11P LOSS WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ 
       69.63        59.70        13.94        14.40         7.20         4.77 
TCGA-ND-A4WC 
       15.16 

  11P LOSS MUTATED 11P LOSS WILD-TYPE 
              5.49               4.77 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
             23.47              69.63 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
             13.71              14.40 
[1] "5.5 - 23.5 (13.7)" "4.8 - 69.6 (14.4)"
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
[1] "hr="   "2e+09"
D40V2, continuous

Clustering(41) Variable = 11Q LOSS MUTATION ANALYSIS
D41V1, survival
                    sevent
clus2                0 1
  11Q LOSS MUTATED   2 4
  11Q LOSS WILD-TYPE 7 1
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                 6                  8 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                 4                  1 
$`11Q LOSS MUTATED`
TCGA-N5-A4RV TCGA-N8-A4PL TCGA-N8-A4PO TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF 
       59.70        13.71        14.40        10.42        23.47         5.49 

$`11Q LOSS WILD-TYPE`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ 
       69.63        14.63        16.34        13.94         7.20         4.77 
TCGA-N8-A56S TCGA-ND-A4WC 
        9.70        15.16 

  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
              5.49               4.77 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
             59.70              69.63 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
            14.055             14.285 
[1] "5.5 - 59.7 (14.1)" "4.8 - 69.6 (14.3)"
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
[1] "hr=" "4.6"
D41V2, continuous

Clustering(42) Variable = 12P LOSS MUTATION ANALYSIS
D42V1, survival
                    sevent
clus2                0 1
  12P LOSS MUTATED   4 1
  12P LOSS WILD-TYPE 5 4
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 5                  9 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 1                  4 
$`12P LOSS MUTATED`
TCGA-N8-A4PI TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ 
       14.63        13.94        14.40         7.20         4.77 

$`12P LOSS WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A56S TCGA-ND-A4W6 
       69.63        59.70        13.71        16.34         9.70        10.42 
TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
       23.47        15.16         5.49 

  12P LOSS MUTATED 12P LOSS WILD-TYPE 
              4.77               5.49 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
             14.63              69.63 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
             13.94              15.16 
[1] "4.8 - 14.6 (13.9)" "5.5 - 69.6 (15.2)"
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "12P LOSS MUTATED"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "12P LOSS MUTATED"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "12P LOSS MUTATED"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D42V2, continuous

Clustering(43) Variable = 12Q LOSS MUTATION ANALYSIS
D43V1, survival
                    sevent
clus2                0 1
  12Q LOSS MUTATED   2 1
  12Q LOSS WILD-TYPE 7 4
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 3                 11 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 1                  4 
$`12Q LOSS MUTATED`
TCGA-N8-A4PI TCGA-N8-A4PO TCGA-N8-A4PP 
       14.63        14.40         7.20 

$`12Q LOSS WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PQ 
       69.63        59.70        13.71        16.34        13.94         4.77 
TCGA-N8-A56S TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
        9.70        10.42        23.47        15.16         5.49 

  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              7.20               4.77 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
             14.63              69.63 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
             14.40              13.94 
[1] "7.2 - 14.6 (14.4)" "4.8 - 69.6 (13.9)"
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D43V2, continuous

Clustering(44) Variable = 13Q LOSS MUTATION ANALYSIS
D44V1, survival
                    sevent
clus2                0 1
  13Q LOSS MUTATED   4 2
  13Q LOSS WILD-TYPE 5 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                 6                  8 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                 2                  3 
$`13Q LOSS MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S TCGA-ND-A4WF 
       69.63        14.63        14.40         7.20         9.70         5.49 

$`13Q LOSS WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-ND-A4W6 
       59.70        13.71        16.34        13.94         4.77        10.42 
TCGA-ND-A4WA TCGA-ND-A4WC 
       23.47        15.16 

  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
              5.49               4.77 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
             69.63              59.70 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
             12.05              14.55 
[1] "5.5 - 69.6 (12.1)" "4.8 - 59.7 (14.6)"
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
[1] "hr=" "1.2"
D44V2, continuous

Clustering(45) Variable = 14Q LOSS MUTATION ANALYSIS
D45V1, survival
                    sevent
clus2                0 1
  14Q LOSS MUTATED   5 4
  14Q LOSS WILD-TYPE 4 1
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                 9                  5 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                 4                  1 
$`14Q LOSS MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ 
       69.63        14.63        13.71        14.40         7.20         4.77 
TCGA-N8-A56S TCGA-ND-A4W6 TCGA-ND-A4WA 
        9.70        10.42        23.47 

$`14Q LOSS WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A4PM TCGA-N8-A4PN TCGA-ND-A4WC TCGA-ND-A4WF 
       59.70        16.34        13.94        15.16         5.49 

  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
              4.77               5.49 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
             69.63              59.70 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
             13.71              15.16 
[1] "4.8 - 69.6 (13.7)" "5.5 - 59.7 (15.2)"
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
[1] "hr=" "2.8"
D45V2, continuous

Clustering(46) Variable = 15Q LOSS MUTATION ANALYSIS
D46V1, survival
                    sevent
clus2                0 1
  15Q LOSS MUTATED   5 4
  15Q LOSS WILD-TYPE 4 1
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                 9                  5 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                 4                  1 
$`15Q LOSS MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP 
       69.63        14.63        13.71        16.34        14.40         7.20 
TCGA-N8-A4PQ TCGA-ND-A4WA TCGA-ND-A4WF 
        4.77        23.47         5.49 

$`15Q LOSS WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A4PN TCGA-N8-A56S TCGA-ND-A4W6 TCGA-ND-A4WC 
       59.70        13.94         9.70        10.42        15.16 

  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
              4.77               9.70 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             69.63              59.70 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             14.40              13.94 
[1] "4.8 - 69.6 (14.4)" "9.7 - 59.7 (13.9)"
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
[1] "hr=" "2.2"
D46V2, continuous

Clustering(47) Variable = 16P LOSS MUTATION ANALYSIS
D47V1, survival
                    sevent
clus2                0 1
  16P LOSS MUTATED   4 3
  16P LOSS WILD-TYPE 5 2
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 7                  7 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 3                  2 
$`16P LOSS MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PP TCGA-N8-A4PQ 
       69.63        14.63        13.71        16.34         7.20         4.77 
TCGA-ND-A4WF 
        5.49 

$`16P LOSS WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A56S TCGA-ND-A4W6 TCGA-ND-A4WA 
       59.70        13.94        14.40         9.70        10.42        23.47 
TCGA-ND-A4WC 
       15.16 

  16P LOSS MUTATED 16P LOSS WILD-TYPE 
              4.77               9.70 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
             69.63              59.70 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
             13.71              14.40 
[1] "4.8 - 69.6 (13.7)" "9.7 - 59.7 (14.4)"
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
[1] "hr=" "2"  
D47V2, continuous

Clustering(48) Variable = 16Q LOSS MUTATION ANALYSIS
D48V1, survival
                    sevent
clus2                0 1
  16Q LOSS MUTATED   5 4
  16Q LOSS WILD-TYPE 4 1
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                 9                  5 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                 4                  1 
$`16Q LOSS MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PP 
       69.63        14.63        13.71        16.34        13.94         7.20 
TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WF 
        4.77        10.42         5.49 

$`16Q LOSS WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A4PO TCGA-N8-A56S TCGA-ND-A4WA TCGA-ND-A4WC 
       59.70        14.40         9.70        23.47        15.16 

  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
              4.77               9.70 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
             69.63              59.70 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
             13.71              15.16 
[1] "4.8 - 69.6 (13.7)" "9.7 - 59.7 (15.2)"
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
[1] "hr=" "3.9"
D48V2, continuous

Clustering(49) Variable = 17P LOSS MUTATION ANALYSIS
D49V1, survival
                    sevent
clus2                0 1
  17P LOSS MUTATED   4 2
  17P LOSS WILD-TYPE 5 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                 6                  8 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                 2                  3 
$`17P LOSS MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A56S TCGA-ND-A4WA TCGA-ND-A4WF 
       69.63        16.34        14.40         9.70        23.47         5.49 

$`17P LOSS WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ 
       59.70        14.63        13.71        13.94         7.20         4.77 
TCGA-ND-A4W6 TCGA-ND-A4WC 
       10.42        15.16 

  17P LOSS MUTATED 17P LOSS WILD-TYPE 
              5.49               4.77 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
             69.63              59.70 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
            15.370             13.825 
[1] "5.5 - 69.6 (15.4)" "4.8 - 59.7 (13.8)"
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
[1] "hr=" "1.5"
D49V2, continuous

Clustering(50) Variable = 18P LOSS MUTATION ANALYSIS
D50V1, survival
                    sevent
clus2                0 1
  18P LOSS MUTATED   2 2
  18P LOSS WILD-TYPE 7 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                 4                 10 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                 2                  3 
$`18P LOSS MUTATED`
TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WA 
       13.94         4.77        10.42        23.47 

$`18P LOSS WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PO 
       69.63        59.70        14.63        13.71        16.34        14.40 
TCGA-N8-A4PP TCGA-N8-A56S TCGA-ND-A4WC TCGA-ND-A4WF 
        7.20         9.70        15.16         5.49 

  18P LOSS MUTATED 18P LOSS WILD-TYPE 
              4.77               5.49 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
             23.47              69.63 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
            12.180             14.515 
[1] "4.8 - 23.5 (12.2)" "5.5 - 69.6 (14.5)"
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
[1] "hr=" "2"  
D50V2, continuous

Clustering(51) Variable = 18Q LOSS MUTATION ANALYSIS
D51V1, survival
                    sevent
clus2                0 1
  18Q LOSS MUTATED   1 2
  18Q LOSS WILD-TYPE 8 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                 3                 11 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                 2                  3 
$`18Q LOSS MUTATED`
TCGA-N8-A4PN TCGA-ND-A4W6 TCGA-ND-A4WA 
       13.94        10.42        23.47 

$`18Q LOSS WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PO 
       69.63        59.70        14.63        13.71        16.34        14.40 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-ND-A4WC TCGA-ND-A4WF 
        7.20         4.77         9.70        15.16         5.49 

  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
             10.42               4.77 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
             23.47              69.63 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
             13.94              14.40 
[1] "10.4 - 23.5 (13.9)" "4.8 - 69.6 (14.4)" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
[1] "hr=" "2"  
D51V2, continuous

Clustering(52) Variable = 19P LOSS MUTATION ANALYSIS
D52V1, survival
                    sevent
clus2                0 1
  19P LOSS MUTATED   3 1
  19P LOSS WILD-TYPE 6 4
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 4                 10 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 1                  4 
$`19P LOSS MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A56S 
       69.63        13.71        16.34         9.70 

$`19P LOSS WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ 
       59.70        14.63        13.94        14.40         7.20         4.77 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
       10.42        23.47        15.16         5.49 

  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              9.70               4.77 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
             69.63              59.70 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
            15.025             14.170 
[1] "9.7 - 69.6 (15.0)" "4.8 - 59.7 (14.2)"
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
[1] "hr=" "1.9"
D52V2, continuous

Clustering(53) Variable = 19Q LOSS MUTATION ANALYSIS
D53V1, survival
                    sevent
clus2                0 1
  19Q LOSS MUTATED   3 1
  19Q LOSS WILD-TYPE 6 4
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 4                 10 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 1                  4 
$`19Q LOSS MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PM TCGA-N8-A56S TCGA-ND-A4WF 
       69.63        16.34         9.70         5.49 

$`19Q LOSS WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP 
       59.70        14.63        13.71        13.94        14.40         7.20 
TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC 
        4.77        10.42        23.47        15.16 

  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              5.49               4.77 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             69.63              59.70 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             13.02              14.17 
[1] "5.5 - 69.6 (13.0)" "4.8 - 59.7 (14.2)"
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
[1] "hr=" "1.6"
D53V2, continuous

Clustering(54) Variable = 21Q LOSS MUTATION ANALYSIS
D54V1, survival
                    sevent
clus2                0 1
  21Q LOSS MUTATED   3 2
  21Q LOSS WILD-TYPE 6 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                 5                  9 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                 2                  3 
$`21Q LOSS MUTATED`
TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PP TCGA-N8-A56S TCGA-ND-A4WA 
       13.71        16.34         7.20         9.70        23.47 

$`21Q LOSS WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PQ 
       69.63        59.70        14.63        13.94        14.40         4.77 
TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-ND-A4WF 
       10.42        15.16         5.49 

  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
              7.20               4.77 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
             23.47              69.63 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
             13.71              14.40 
[1] "7.2 - 23.5 (13.7)" "4.8 - 69.6 (14.4)"
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D54V2, continuous

Clustering(55) Variable = 22Q LOSS MUTATION ANALYSIS
D55V1, survival
                    sevent
clus2                0 1
  22Q LOSS MUTATED   5 3
  22Q LOSS WILD-TYPE 4 2
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                 8                  6 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                 3                  2 
$`22Q LOSS MUTATED`
TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP 
       59.70        14.63        13.71        16.34        14.40         7.20 
TCGA-N8-A56S TCGA-ND-A4WA 
        9.70        23.47 

$`22Q LOSS WILD-TYPE`
TCGA-N5-A4RT TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-ND-A4WF 
       69.63        13.94         4.77        10.42        15.16         5.49 

  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
              7.20               4.77 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
             59.70              69.63 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
            14.515             12.180 
[1] "7.2 - 59.7 (14.5)" "4.8 - 69.6 (12.2)"
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-N5-A4RT         TCGA-N5-A4RV         TCGA-N8-A4PI 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-ND-A4W6         TCGA-ND-A4WA 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-ND-A4WC         TCGA-ND-A4WF 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D55V2, continuous

Clustering(56) Variable = XQ LOSS MUTATION ANALYSIS
D56V1, survival
                   sevent
clus2               0 1
  XQ LOSS MUTATED   2 1
  XQ LOSS WILD-TYPE 7 4
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                3                11 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                1                 4 
$`XQ LOSS MUTATED`
TCGA-N8-A4PP TCGA-N8-A56S TCGA-ND-A4WF 
        7.20         9.70         5.49 

$`XQ LOSS WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN 
       69.63        59.70        14.63        13.71        16.34        13.94 
TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC 
       14.40         4.77        10.42        23.47        15.16 

  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
             5.49              4.77 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
             9.70             69.63 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
             7.20             14.63 
[1] "5.5 - 9.7 (7.2)"   "4.8 - 69.6 (14.6)"
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-N5-A4RT        TCGA-N5-A4RV        TCGA-N8-A4PI        TCGA-N8-A4PL 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-ND-A4W6        TCGA-ND-A4WA 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-ND-A4WC        TCGA-ND-A4WF 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
[1] "hr="     "7.2e+08"
D56V2, continuous
> q(save="no")
