
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/UCS-TP/4470342/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/UCS-TP/4402167/UCS-TP.clin.merged.picked.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=UCS-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oT=UCS-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/UCS-TP/4402167/UCS-TP.clin.merged.picked.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/UCS-TP/4470342/transformed.cor.cli.txt"

nPatients in clinical file=15, in cluster file=56, common to both=14
[1] "Reduce the number of clustering variables from 61 to 56."
[1] 56 14
[1] "AMP PEAK  1(1Q22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                          9                           5 
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                          9                           5 
[1] "AMP PEAK  2(2P14) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(2P14) MUTATED AMP PEAK  2(2P14) WILD-TYPE 
                          7                           7 
  AMP PEAK  2(2P14) MUTATED AMP PEAK  2(2P14) WILD-TYPE 
                          7                           7 
[1] "AMP PEAK  3(2Q13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(2Q13) MUTATED AMP PEAK  3(2Q13) WILD-TYPE 
                          7                           7 
  AMP PEAK  3(2Q13) MUTATED AMP PEAK  3(2Q13) WILD-TYPE 
                          7                           7 
[1] "AMP PEAK  4(3P25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                            6                             8 
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                            6                             8 
[1] "AMP PEAK  5(3Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE 
                            9                             5 
  AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE 
                            9                             5 
[1] "AMP PEAK  6(4P16.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE 
                            7                             7 
  AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE 
                            7                             7 
[1] "AMP PEAK  7(5P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(5P13.2) MUTATED AMP PEAK  7(5P13.2) WILD-TYPE 
                            6                             8 
  AMP PEAK  7(5P13.2) MUTATED AMP PEAK  7(5P13.2) WILD-TYPE 
                            6                             8 
[1] "AMP PEAK  8(6P24.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(6P24.2) MUTATED AMP PEAK  8(6P24.2) WILD-TYPE 
                           10                             4 
  AMP PEAK  8(6P24.2) MUTATED AMP PEAK  8(6P24.2) WILD-TYPE 
                           10                             4 
[1] "AMP PEAK  9(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(8P11.21) MUTATED AMP PEAK  9(8P11.21) WILD-TYPE 
                             3                             11 
  AMP PEAK  9(8P11.21) MUTATED AMP PEAK  9(8P11.21) WILD-TYPE 
                             3                             11 
[1] "AMP PEAK 10(8Q11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(8Q11.23) MUTATED AMP PEAK 10(8Q11.23) WILD-TYPE 
                             6                              8 
  AMP PEAK 10(8Q11.23) MUTATED AMP PEAK 10(8Q11.23) WILD-TYPE 
                             6                              8 
[1] "AMP PEAK 11(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                            11                              3 
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                            11                              3 
[1] "AMP PEAK 12(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                            10                              4 
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                            10                              4 
[1] "AMP PEAK 13(10Q22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(10Q22.2) MUTATED AMP PEAK 13(10Q22.2) WILD-TYPE 
                             8                              6 
  AMP PEAK 13(10Q22.2) MUTATED AMP PEAK 13(10Q22.2) WILD-TYPE 
                             8                              6 
[1] "AMP PEAK 14(11Q13.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(11Q13.1) MUTATED AMP PEAK 14(11Q13.1) WILD-TYPE 
                             6                              8 
  AMP PEAK 14(11Q13.1) MUTATED AMP PEAK 14(11Q13.1) WILD-TYPE 
                             6                              8 
[1] "AMP PEAK 15(12Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(12Q12) MUTATED AMP PEAK 15(12Q12) WILD-TYPE 
                           5                            9 
  AMP PEAK 15(12Q12) MUTATED AMP PEAK 15(12Q12) WILD-TYPE 
                           5                            9 
[1] "AMP PEAK 16(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                           6                            8 
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                           6                            8 
[1] "AMP PEAK 17(13Q31.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE 
                             6                              8 
  AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE 
                             6                              8 
[1] "AMP PEAK 18(16P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE 
                             3                             11 
  AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE 
                             3                             11 
[1] "AMP PEAK 19(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE 
                          10                            4 
  AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE 
                          10                            4 
[1] "AMP PEAK 20(17Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE 
                             7                              7 
  AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE 
                             7                              7 
[1] "AMP PEAK 21(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE 
                             3                             11 
  AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE 
                             3                             11 
[1] "AMP PEAK 25(XP11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(XP11.21) MUTATED AMP PEAK 25(XP11.21) WILD-TYPE 
                             4                             10 
  AMP PEAK 25(XP11.21) MUTATED AMP PEAK 25(XP11.21) WILD-TYPE 
                             4                             10 
[1] "DEL PEAK  1(1P36.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                             5                              9 
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                             5                              9 
[1] "DEL PEAK  2(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                            3                            11 
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                            3                            11 
[1] "DEL PEAK  3(3P21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(3P21.1) MUTATED DEL PEAK  3(3P21.1) WILD-TYPE 
                            8                             6 
  DEL PEAK  3(3P21.1) MUTATED DEL PEAK  3(3P21.1) WILD-TYPE 
                            8                             6 
[1] "DEL PEAK  4(3P14.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(3P14.1) MUTATED DEL PEAK  4(3P14.1) WILD-TYPE 
                            7                             7 
  DEL PEAK  4(3P14.1) MUTATED DEL PEAK  4(3P14.1) WILD-TYPE 
                            7                             7 
[1] "DEL PEAK  5(3Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE 
                             6                              8 
  DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE 
                             6                              8 
[1] "DEL PEAK  6(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE 
                            9                             5 
  DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE 
                            9                             5 
[1] "DEL PEAK  7(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                            9                             5 
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                            9                             5 
[1] "DEL PEAK  8(5Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE 
                            7                             7 
  DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE 
                            7                             7 
[1] "DEL PEAK  9(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE 
                          4                          10 
  DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE 
                          4                          10 
[1] "DEL PEAK 10(7Q11.22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(7Q11.22) MUTATED DEL PEAK 10(7Q11.22) WILD-TYPE 
                             6                              8 
  DEL PEAK 10(7Q11.22) MUTATED DEL PEAK 10(7Q11.22) WILD-TYPE 
                             6                              8 
[1] "DEL PEAK 11(7Q36.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(7Q36.2) MUTATED DEL PEAK 11(7Q36.2) WILD-TYPE 
                            7                             7 
  DEL PEAK 11(7Q36.2) MUTATED DEL PEAK 11(7Q36.2) WILD-TYPE 
                            7                             7 
[1] "DEL PEAK 12(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE 
                            8                             6 
  DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE 
                            8                             6 
[1] "DEL PEAK 13(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE 
                          6                           8 
  DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE 
                          6                           8 
[1] "DEL PEAK 14(9Q21.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(9Q21.13) MUTATED DEL PEAK 14(9Q21.13) WILD-TYPE 
                            11                              3 
  DEL PEAK 14(9Q21.13) MUTATED DEL PEAK 14(9Q21.13) WILD-TYPE 
                            11                              3 
[1] "DEL PEAK 15(9Q33.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(9Q33.3) MUTATED DEL PEAK 15(9Q33.3) WILD-TYPE 
                           10                             4 
  DEL PEAK 15(9Q33.3) MUTATED DEL PEAK 15(9Q33.3) WILD-TYPE 
                           10                             4 
[1] "DEL PEAK 16(10Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(10Q21.1) MUTATED DEL PEAK 16(10Q21.1) WILD-TYPE 
                             3                             11 
  DEL PEAK 16(10Q21.1) MUTATED DEL PEAK 16(10Q21.1) WILD-TYPE 
                             3                             11 
[1] "DEL PEAK 17(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                              3                              11 
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                              3                              11 
[1] "DEL PEAK 18(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE 
                             4                             10 
  DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE 
                             4                             10 
[1] "DEL PEAK 19(11Q14.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(11Q14.1) MUTATED DEL PEAK 19(11Q14.1) WILD-TYPE 
                             7                              7 
  DEL PEAK 19(11Q14.1) MUTATED DEL PEAK 19(11Q14.1) WILD-TYPE 
                             7                              7 
[1] "DEL PEAK 20(11Q24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(11Q24.2) MUTATED DEL PEAK 20(11Q24.2) WILD-TYPE 
                             7                              7 
  DEL PEAK 20(11Q24.2) MUTATED DEL PEAK 20(11Q24.2) WILD-TYPE 
                             7                              7 
[1] "DEL PEAK 21(12Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(12Q23.1) MUTATED DEL PEAK 21(12Q23.1) WILD-TYPE 
                             3                             11 
  DEL PEAK 21(12Q23.1) MUTATED DEL PEAK 21(12Q23.1) WILD-TYPE 
                             3                             11 
[1] "DEL PEAK 22(12Q24.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(12Q24.31) MUTATED DEL PEAK 22(12Q24.31) WILD-TYPE 
                              4                              10 
  DEL PEAK 22(12Q24.31) MUTATED DEL PEAK 22(12Q24.31) WILD-TYPE 
                              4                              10 
[1] "DEL PEAK 23(13Q12.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(13Q12.11) MUTATED DEL PEAK 23(13Q12.11) WILD-TYPE 
                              7                               7 
  DEL PEAK 23(13Q12.11) MUTATED DEL PEAK 23(13Q12.11) WILD-TYPE 
                              7                               7 
[1] "DEL PEAK 24(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE 
                             7                              7 
  DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE 
                             7                              7 
[1] "DEL PEAK 25(14Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(14Q21.1) MUTATED DEL PEAK 25(14Q21.1) WILD-TYPE 
                             9                              5 
  DEL PEAK 25(14Q21.1) MUTATED DEL PEAK 25(14Q21.1) WILD-TYPE 
                             9                              5 
[1] "DEL PEAK 26(15Q14) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(15Q14) MUTATED DEL PEAK 26(15Q14) WILD-TYPE 
                          11                            3 
  DEL PEAK 26(15Q14) MUTATED DEL PEAK 26(15Q14) WILD-TYPE 
                          11                            3 
[1] "DEL PEAK 27(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE 
                            10                              4 
  DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE 
                            10                              4 
[1] "DEL PEAK 28(17P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(17P13.1) MUTATED DEL PEAK 28(17P13.1) WILD-TYPE 
                            10                              4 
  DEL PEAK 28(17P13.1) MUTATED DEL PEAK 28(17P13.1) WILD-TYPE 
                            10                              4 
[1] "DEL PEAK 29(17Q21.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(17Q21.32) MUTATED DEL PEAK 29(17Q21.32) WILD-TYPE 
                              4                              10 
  DEL PEAK 29(17Q21.32) MUTATED DEL PEAK 29(17Q21.32) WILD-TYPE 
                              4                              10 
[1] "DEL PEAK 30(18Q22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(18Q22.2) MUTATED DEL PEAK 30(18Q22.2) WILD-TYPE 
                             5                              9 
  DEL PEAK 30(18Q22.2) MUTATED DEL PEAK 30(18Q22.2) WILD-TYPE 
                             5                              9 
[1] "DEL PEAK 32(19Q13.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(19Q13.33) MUTATED DEL PEAK 32(19Q13.33) WILD-TYPE 
                              6                               8 
  DEL PEAK 32(19Q13.33) MUTATED DEL PEAK 32(19Q13.33) WILD-TYPE 
                              6                               8 
[1] "DEL PEAK 34(22Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE 
                             11                               3 
  DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE 
                             11                               3 
[1] "DEL PEAK 35(XP21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(XP21.1) MUTATED DEL PEAK 35(XP21.1) WILD-TYPE 
                            8                             6 
  DEL PEAK 35(XP21.1) MUTATED DEL PEAK 35(XP21.1) WILD-TYPE 
                            8                             6 
[1] "DEL PEAK 36(XQ25) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(XQ25) MUTATED DEL PEAK 36(XQ25) WILD-TYPE 
                          3                          11 
  DEL PEAK 36(XQ25) MUTATED DEL PEAK 36(XQ25) WILD-TYPE 
                          3                          11 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "NEOPLASM.DISEASESTAGE"                 
 [6] "PATHOLOGY.T.STAGE"                     
 [7] "PATHOLOGY.N.STAGE"                     
 [8] "PATHOLOGY.M.STAGE"                     
 [9] "DCCUPLOADDATE"                         
[10] "GENDER"                                
[11] "RADIATIONTHERAPY"                      
[12] "RADIATIONS.RADIATION.REGIMENINDICATION"
[13] "BATCHNUMBER"                           

Input Data has 13 rows and 14 columns.

[1] "Batch" "13"   
[1] "Last Follow UP"
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN 
        2118         1816           NA           NA          497          424 
TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-ND-A4W6 TCGA-ND-A4WA 
         438          219          145          295           NA           NA 
TCGA-ND-A4WC TCGA-ND-A4WF 
         461           NA 
Variable 1:'AGE':	nDistinctValues=14,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=5,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=9,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'NEOPLASM.DISEASESTAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PATHOLOGY.T.STAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'PATHOLOGY.N.STAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 8:'PATHOLOGY.M.STAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'GENDER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 13:'BATCH.NUMBER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 14 columns, 1 survival variables, and 1 non-survival variables.
AGE, nv=14, binary=FALSE, numeric=TRUE

Clustering(1) Variable = AMP PEAK  1(1Q22) MUTATION ANALYSIS
D1V1, survival
                             sevent
clus2                         0 1
  AMP PEAK  1(1Q22) MUTATED   7 2
  AMP PEAK  1(1Q22) WILD-TYPE 2 3
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                          9                           5 
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                          2                           3 
$`AMP PEAK  1(1Q22) MUTATED`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO 
       69.63        59.70        13.71        16.34        13.94        14.40 
TCGA-N8-A4PP TCGA-N8-A56S TCGA-ND-A4WF 
        7.20         9.70         5.49 

$`AMP PEAK  1(1Q22) WILD-TYPE`
TCGA-N8-A4PI TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC 
       14.63         4.77        10.42        23.47        15.16 

  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                       5.49                        4.77 
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                      69.63                       23.47 
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                      13.94                       14.63 
[1] "5.5 - 69.6 (13.9)" "4.8 - 23.5 (14.6)"
                 TCGA-N5-A4RT                  TCGA-N5-A4RV 
  "AMP PEAK  1(1Q22) MUTATED"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N8-A4PI                  TCGA-N8-A4PL 
"AMP PEAK  1(1Q22) WILD-TYPE"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N8-A4PM                  TCGA-N8-A4PN 
  "AMP PEAK  1(1Q22) MUTATED"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N8-A4PO                  TCGA-N8-A4PP 
  "AMP PEAK  1(1Q22) MUTATED"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N8-A4PQ                  TCGA-N8-A56S 
"AMP PEAK  1(1Q22) WILD-TYPE"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"AMP PEAK  1(1Q22) WILD-TYPE"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N5-A4RT                  TCGA-N5-A4RV 
  "AMP PEAK  1(1Q22) MUTATED"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N8-A4PI                  TCGA-N8-A4PL 
"AMP PEAK  1(1Q22) WILD-TYPE"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N8-A4PM                  TCGA-N8-A4PN 
  "AMP PEAK  1(1Q22) MUTATED"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N8-A4PO                  TCGA-N8-A4PP 
  "AMP PEAK  1(1Q22) MUTATED"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N8-A4PQ                  TCGA-N8-A56S 
"AMP PEAK  1(1Q22) WILD-TYPE"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"AMP PEAK  1(1Q22) WILD-TYPE"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N5-A4RT                  TCGA-N5-A4RV 
  "AMP PEAK  1(1Q22) MUTATED"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N8-A4PI                  TCGA-N8-A4PL 
"AMP PEAK  1(1Q22) WILD-TYPE"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N8-A4PM                  TCGA-N8-A4PN 
  "AMP PEAK  1(1Q22) MUTATED"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N8-A4PO                  TCGA-N8-A4PP 
  "AMP PEAK  1(1Q22) MUTATED"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N8-A4PQ                  TCGA-N8-A56S 
"AMP PEAK  1(1Q22) WILD-TYPE"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"AMP PEAK  1(1Q22) WILD-TYPE"   "AMP PEAK  1(1Q22) MUTATED" 
[1] "hr=" "2.5"
D1V2, continuous

Clustering(2) Variable = AMP PEAK  2(2P14) MUTATION ANALYSIS
D2V1, survival
                             sevent
clus2                         0 1
  AMP PEAK  2(2P14) MUTATED   4 3
  AMP PEAK  2(2P14) WILD-TYPE 5 2
  AMP PEAK  2(2P14) MUTATED AMP PEAK  2(2P14) WILD-TYPE 
                          7                           7 
  AMP PEAK  2(2P14) MUTATED AMP PEAK  2(2P14) WILD-TYPE 
                          3                           2 
$`AMP PEAK  2(2P14) MUTATED`
TCGA-N8-A4PL TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-ND-A4W6 
       13.71        14.40         7.20         4.77         9.70        10.42 
TCGA-ND-A4WA 
       23.47 

$`AMP PEAK  2(2P14) WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PN TCGA-ND-A4WC 
       69.63        59.70        14.63        16.34        13.94        15.16 
TCGA-ND-A4WF 
        5.49 

  AMP PEAK  2(2P14) MUTATED AMP PEAK  2(2P14) WILD-TYPE 
                       4.77                        5.49 
  AMP PEAK  2(2P14) MUTATED AMP PEAK  2(2P14) WILD-TYPE 
                      23.47                       69.63 
  AMP PEAK  2(2P14) MUTATED AMP PEAK  2(2P14) WILD-TYPE 
                      10.42                       15.16 
[1] "4.8 - 23.5 (10.4)" "5.5 - 69.6 (15.2)"
                 TCGA-N5-A4RT                  TCGA-N5-A4RV 
"AMP PEAK  2(2P14) WILD-TYPE" "AMP PEAK  2(2P14) WILD-TYPE" 
                 TCGA-N8-A4PI                  TCGA-N8-A4PL 
"AMP PEAK  2(2P14) WILD-TYPE"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-N8-A4PM                  TCGA-N8-A4PN 
"AMP PEAK  2(2P14) WILD-TYPE" "AMP PEAK  2(2P14) WILD-TYPE" 
                 TCGA-N8-A4PO                  TCGA-N8-A4PP 
  "AMP PEAK  2(2P14) MUTATED"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-N8-A4PQ                  TCGA-N8-A56S 
  "AMP PEAK  2(2P14) MUTATED"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
  "AMP PEAK  2(2P14) MUTATED"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"AMP PEAK  2(2P14) WILD-TYPE" "AMP PEAK  2(2P14) WILD-TYPE" 
                 TCGA-N5-A4RT                  TCGA-N5-A4RV 
"AMP PEAK  2(2P14) WILD-TYPE" "AMP PEAK  2(2P14) WILD-TYPE" 
                 TCGA-N8-A4PI                  TCGA-N8-A4PL 
"AMP PEAK  2(2P14) WILD-TYPE"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-N8-A4PM                  TCGA-N8-A4PN 
"AMP PEAK  2(2P14) WILD-TYPE" "AMP PEAK  2(2P14) WILD-TYPE" 
                 TCGA-N8-A4PO                  TCGA-N8-A4PP 
  "AMP PEAK  2(2P14) MUTATED"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-N8-A4PQ                  TCGA-N8-A56S 
  "AMP PEAK  2(2P14) MUTATED"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
  "AMP PEAK  2(2P14) MUTATED"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"AMP PEAK  2(2P14) WILD-TYPE" "AMP PEAK  2(2P14) WILD-TYPE" 
                 TCGA-N5-A4RT                  TCGA-N5-A4RV 
"AMP PEAK  2(2P14) WILD-TYPE" "AMP PEAK  2(2P14) WILD-TYPE" 
                 TCGA-N8-A4PI                  TCGA-N8-A4PL 
"AMP PEAK  2(2P14) WILD-TYPE"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-N8-A4PM                  TCGA-N8-A4PN 
"AMP PEAK  2(2P14) WILD-TYPE" "AMP PEAK  2(2P14) WILD-TYPE" 
                 TCGA-N8-A4PO                  TCGA-N8-A4PP 
  "AMP PEAK  2(2P14) MUTATED"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-N8-A4PQ                  TCGA-N8-A56S 
  "AMP PEAK  2(2P14) MUTATED"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
  "AMP PEAK  2(2P14) MUTATED"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"AMP PEAK  2(2P14) WILD-TYPE" "AMP PEAK  2(2P14) WILD-TYPE" 
[1] "hr=" "3.1"
D2V2, continuous

Clustering(3) Variable = AMP PEAK  3(2Q13) MUTATION ANALYSIS
D3V1, survival
                             sevent
clus2                         0 1
  AMP PEAK  3(2Q13) MUTATED   5 2
  AMP PEAK  3(2Q13) WILD-TYPE 4 3
  AMP PEAK  3(2Q13) MUTATED AMP PEAK  3(2Q13) WILD-TYPE 
                          7                           7 
  AMP PEAK  3(2Q13) MUTATED AMP PEAK  3(2Q13) WILD-TYPE 
                          2                           3 
$`AMP PEAK  3(2Q13) MUTATED`
TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S 
       13.71        16.34        13.94        14.40         7.20         9.70 
TCGA-ND-A4WA 
       23.47 

$`AMP PEAK  3(2Q13) WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WC 
       69.63        59.70        14.63         4.77        10.42        15.16 
TCGA-ND-A4WF 
        5.49 

  AMP PEAK  3(2Q13) MUTATED AMP PEAK  3(2Q13) WILD-TYPE 
                       7.20                        4.77 
  AMP PEAK  3(2Q13) MUTATED AMP PEAK  3(2Q13) WILD-TYPE 
                      23.47                       69.63 
  AMP PEAK  3(2Q13) MUTATED AMP PEAK  3(2Q13) WILD-TYPE 
                      13.94                       14.63 
[1] "7.2 - 23.5 (13.9)" "4.8 - 69.6 (14.6)"
                 TCGA-N5-A4RT                  TCGA-N5-A4RV 
"AMP PEAK  3(2Q13) WILD-TYPE" "AMP PEAK  3(2Q13) WILD-TYPE" 
                 TCGA-N8-A4PI                  TCGA-N8-A4PL 
"AMP PEAK  3(2Q13) WILD-TYPE"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-N8-A4PM                  TCGA-N8-A4PN 
  "AMP PEAK  3(2Q13) MUTATED"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-N8-A4PO                  TCGA-N8-A4PP 
  "AMP PEAK  3(2Q13) MUTATED"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-N8-A4PQ                  TCGA-N8-A56S 
"AMP PEAK  3(2Q13) WILD-TYPE"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
"AMP PEAK  3(2Q13) WILD-TYPE"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"AMP PEAK  3(2Q13) WILD-TYPE" "AMP PEAK  3(2Q13) WILD-TYPE" 
                 TCGA-N5-A4RT                  TCGA-N5-A4RV 
"AMP PEAK  3(2Q13) WILD-TYPE" "AMP PEAK  3(2Q13) WILD-TYPE" 
                 TCGA-N8-A4PI                  TCGA-N8-A4PL 
"AMP PEAK  3(2Q13) WILD-TYPE"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-N8-A4PM                  TCGA-N8-A4PN 
  "AMP PEAK  3(2Q13) MUTATED"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-N8-A4PO                  TCGA-N8-A4PP 
  "AMP PEAK  3(2Q13) MUTATED"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-N8-A4PQ                  TCGA-N8-A56S 
"AMP PEAK  3(2Q13) WILD-TYPE"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
"AMP PEAK  3(2Q13) WILD-TYPE"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"AMP PEAK  3(2Q13) WILD-TYPE" "AMP PEAK  3(2Q13) WILD-TYPE" 
                 TCGA-N5-A4RT                  TCGA-N5-A4RV 
"AMP PEAK  3(2Q13) WILD-TYPE" "AMP PEAK  3(2Q13) WILD-TYPE" 
                 TCGA-N8-A4PI                  TCGA-N8-A4PL 
"AMP PEAK  3(2Q13) WILD-TYPE"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-N8-A4PM                  TCGA-N8-A4PN 
  "AMP PEAK  3(2Q13) MUTATED"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-N8-A4PO                  TCGA-N8-A4PP 
  "AMP PEAK  3(2Q13) MUTATED"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-N8-A4PQ                  TCGA-N8-A56S 
"AMP PEAK  3(2Q13) WILD-TYPE"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
"AMP PEAK  3(2Q13) WILD-TYPE"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"AMP PEAK  3(2Q13) WILD-TYPE" "AMP PEAK  3(2Q13) WILD-TYPE" 
[1] "hr=" "1.2"
D3V2, continuous

Clustering(4) Variable = AMP PEAK  4(3P25.1) MUTATION ANALYSIS
D4V1, survival
                               sevent
clus2                           0 1
  AMP PEAK  4(3P25.1) MUTATED   4 2
  AMP PEAK  4(3P25.1) WILD-TYPE 5 3
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                            6                             8 
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                            2                             3 
$`AMP PEAK  4(3P25.1) MUTATED`
TCGA-N5-A4RV TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WA 
       59.70        13.94        14.40         4.77        10.42        23.47 

$`AMP PEAK  4(3P25.1) WILD-TYPE`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PP TCGA-N8-A56S 
       69.63        14.63        13.71        16.34         7.20         9.70 
TCGA-ND-A4WC TCGA-ND-A4WF 
       15.16         5.49 

  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                         4.77                          5.49 
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                        59.70                         69.63 
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                        14.17                         14.17 
[1] "4.8 - 59.7 (14.2)" "5.5 - 69.6 (14.2)"
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
"AMP PEAK  4(3P25.1) WILD-TYPE"   "AMP PEAK  4(3P25.1) MUTATED" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"AMP PEAK  4(3P25.1) WILD-TYPE" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
"AMP PEAK  4(3P25.1) WILD-TYPE"   "AMP PEAK  4(3P25.1) MUTATED" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "AMP PEAK  4(3P25.1) MUTATED" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
  "AMP PEAK  4(3P25.1) MUTATED" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "AMP PEAK  4(3P25.1) MUTATED"   "AMP PEAK  4(3P25.1) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"AMP PEAK  4(3P25.1) WILD-TYPE" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
"AMP PEAK  4(3P25.1) WILD-TYPE"   "AMP PEAK  4(3P25.1) MUTATED" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"AMP PEAK  4(3P25.1) WILD-TYPE" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
"AMP PEAK  4(3P25.1) WILD-TYPE"   "AMP PEAK  4(3P25.1) MUTATED" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "AMP PEAK  4(3P25.1) MUTATED" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
  "AMP PEAK  4(3P25.1) MUTATED" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "AMP PEAK  4(3P25.1) MUTATED"   "AMP PEAK  4(3P25.1) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"AMP PEAK  4(3P25.1) WILD-TYPE" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
"AMP PEAK  4(3P25.1) WILD-TYPE"   "AMP PEAK  4(3P25.1) MUTATED" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"AMP PEAK  4(3P25.1) WILD-TYPE" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
"AMP PEAK  4(3P25.1) WILD-TYPE"   "AMP PEAK  4(3P25.1) MUTATED" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "AMP PEAK  4(3P25.1) MUTATED" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
  "AMP PEAK  4(3P25.1) MUTATED" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "AMP PEAK  4(3P25.1) MUTATED"   "AMP PEAK  4(3P25.1) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"AMP PEAK  4(3P25.1) WILD-TYPE" "AMP PEAK  4(3P25.1) WILD-TYPE" 
[1] "hr=" "1.3"
D4V2, continuous

Clustering(5) Variable = AMP PEAK  5(3Q26.2) MUTATION ANALYSIS
D5V1, survival
                               sevent
clus2                           0 1
  AMP PEAK  5(3Q26.2) MUTATED   6 3
  AMP PEAK  5(3Q26.2) WILD-TYPE 3 2
  AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE 
                            9                             5 
  AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE 
                            3                             2 
$`AMP PEAK  5(3Q26.2) MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ 
       69.63        13.71        13.94        14.40         7.20         4.77 
TCGA-N8-A56S TCGA-ND-A4WA TCGA-ND-A4WF 
        9.70        23.47         5.49 

$`AMP PEAK  5(3Q26.2) WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PM TCGA-ND-A4W6 TCGA-ND-A4WC 
       59.70        14.63        16.34        10.42        15.16 

  AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE 
                         4.77                         10.42 
  AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE 
                        69.63                         59.70 
  AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE 
                        13.71                         15.16 
[1] "4.8 - 69.6 (13.7)"  "10.4 - 59.7 (15.2)"
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "AMP PEAK  5(3Q26.2) MUTATED" "AMP PEAK  5(3Q26.2) WILD-TYPE" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"AMP PEAK  5(3Q26.2) WILD-TYPE"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
"AMP PEAK  5(3Q26.2) WILD-TYPE"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "AMP PEAK  5(3Q26.2) MUTATED"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
  "AMP PEAK  5(3Q26.2) MUTATED"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
"AMP PEAK  5(3Q26.2) WILD-TYPE"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"AMP PEAK  5(3Q26.2) WILD-TYPE"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "AMP PEAK  5(3Q26.2) MUTATED" "AMP PEAK  5(3Q26.2) WILD-TYPE" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"AMP PEAK  5(3Q26.2) WILD-TYPE"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
"AMP PEAK  5(3Q26.2) WILD-TYPE"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "AMP PEAK  5(3Q26.2) MUTATED"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
  "AMP PEAK  5(3Q26.2) MUTATED"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
"AMP PEAK  5(3Q26.2) WILD-TYPE"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"AMP PEAK  5(3Q26.2) WILD-TYPE"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "AMP PEAK  5(3Q26.2) MUTATED" "AMP PEAK  5(3Q26.2) WILD-TYPE" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"AMP PEAK  5(3Q26.2) WILD-TYPE"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
"AMP PEAK  5(3Q26.2) WILD-TYPE"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "AMP PEAK  5(3Q26.2) MUTATED"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
  "AMP PEAK  5(3Q26.2) MUTATED"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
"AMP PEAK  5(3Q26.2) WILD-TYPE"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"AMP PEAK  5(3Q26.2) WILD-TYPE"   "AMP PEAK  5(3Q26.2) MUTATED" 
[1] "hr=" "1.3"
D5V2, continuous

Clustering(6) Variable = AMP PEAK  6(4P16.3) MUTATION ANALYSIS
D6V1, survival
                               sevent
clus2                           0 1
  AMP PEAK  6(4P16.3) MUTATED   6 1
  AMP PEAK  6(4P16.3) WILD-TYPE 3 4
  AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE 
                            7                             7 
  AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE 
                            1                             4 
$`AMP PEAK  6(4P16.3) MUTATED`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-ND-A4W6 
       69.63        59.70        16.34        13.94         4.77        10.42 
TCGA-ND-A4WC 
       15.16 

$`AMP PEAK  6(4P16.3) WILD-TYPE`
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S TCGA-ND-A4WA 
       14.63        13.71        14.40         7.20         9.70        23.47 
TCGA-ND-A4WF 
        5.49 

  AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE 
                         4.77                          5.49 
  AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE 
                        69.63                         23.47 
  AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE 
                        15.16                         13.71 
[1] "4.8 - 69.6 (15.2)" "5.5 - 23.5 (13.7)"
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "AMP PEAK  6(4P16.3) MUTATED"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
  "AMP PEAK  6(4P16.3) MUTATED"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "AMP PEAK  6(4P16.3) MUTATED"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
  "AMP PEAK  6(4P16.3) MUTATED"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "AMP PEAK  6(4P16.3) MUTATED"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
  "AMP PEAK  6(4P16.3) MUTATED"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
[1] "hr=" "6"  
D6V2, continuous

Clustering(7) Variable = AMP PEAK  7(5P13.2) MUTATION ANALYSIS
D7V1, survival
                               sevent
clus2                           0 1
  AMP PEAK  7(5P13.2) MUTATED   5 1
  AMP PEAK  7(5P13.2) WILD-TYPE 4 4
  AMP PEAK  7(5P13.2) MUTATED AMP PEAK  7(5P13.2) WILD-TYPE 
                            6                             8 
  AMP PEAK  7(5P13.2) MUTATED AMP PEAK  7(5P13.2) WILD-TYPE 
                            1                             4 
$`AMP PEAK  7(5P13.2) MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-ND-A4W6 
       69.63        13.94        14.40         7.20         4.77        10.42 

$`AMP PEAK  7(5P13.2) WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A56S TCGA-ND-A4WA 
       59.70        14.63        13.71        16.34         9.70        23.47 
TCGA-ND-A4WC TCGA-ND-A4WF 
       15.16         5.49 

  AMP PEAK  7(5P13.2) MUTATED AMP PEAK  7(5P13.2) WILD-TYPE 
                         4.77                          5.49 
  AMP PEAK  7(5P13.2) MUTATED AMP PEAK  7(5P13.2) WILD-TYPE 
                        69.63                         59.70 
  AMP PEAK  7(5P13.2) MUTATED AMP PEAK  7(5P13.2) WILD-TYPE 
                       12.180                        14.895 
[1] "4.8 - 69.6 (12.2)" "5.5 - 59.7 (14.9)"
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "AMP PEAK  7(5P13.2) MUTATED" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"AMP PEAK  7(5P13.2) WILD-TYPE" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
"AMP PEAK  7(5P13.2) WILD-TYPE"   "AMP PEAK  7(5P13.2) MUTATED" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "AMP PEAK  7(5P13.2) MUTATED"   "AMP PEAK  7(5P13.2) MUTATED" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
  "AMP PEAK  7(5P13.2) MUTATED" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "AMP PEAK  7(5P13.2) MUTATED" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"AMP PEAK  7(5P13.2) WILD-TYPE" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "AMP PEAK  7(5P13.2) MUTATED" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"AMP PEAK  7(5P13.2) WILD-TYPE" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
"AMP PEAK  7(5P13.2) WILD-TYPE"   "AMP PEAK  7(5P13.2) MUTATED" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "AMP PEAK  7(5P13.2) MUTATED"   "AMP PEAK  7(5P13.2) MUTATED" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
  "AMP PEAK  7(5P13.2) MUTATED" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "AMP PEAK  7(5P13.2) MUTATED" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"AMP PEAK  7(5P13.2) WILD-TYPE" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "AMP PEAK  7(5P13.2) MUTATED" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"AMP PEAK  7(5P13.2) WILD-TYPE" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
"AMP PEAK  7(5P13.2) WILD-TYPE"   "AMP PEAK  7(5P13.2) MUTATED" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "AMP PEAK  7(5P13.2) MUTATED"   "AMP PEAK  7(5P13.2) MUTATED" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
  "AMP PEAK  7(5P13.2) MUTATED" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "AMP PEAK  7(5P13.2) MUTATED" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"AMP PEAK  7(5P13.2) WILD-TYPE" "AMP PEAK  7(5P13.2) WILD-TYPE" 
[1] "hr=" "1.9"
D7V2, continuous

Clustering(8) Variable = AMP PEAK  8(6P24.2) MUTATION ANALYSIS
D8V1, survival
                               sevent
clus2                           0 1
  AMP PEAK  8(6P24.2) MUTATED   6 4
  AMP PEAK  8(6P24.2) WILD-TYPE 3 1
  AMP PEAK  8(6P24.2) MUTATED AMP PEAK  8(6P24.2) WILD-TYPE 
                           10                             4 
  AMP PEAK  8(6P24.2) MUTATED AMP PEAK  8(6P24.2) WILD-TYPE 
                            4                             1 
$`AMP PEAK  8(6P24.2) MUTATED`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO 
       69.63        59.70        13.71        16.34        13.94        14.40 
TCGA-N8-A4PP TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF 
        7.20        10.42        23.47         5.49 

$`AMP PEAK  8(6P24.2) WILD-TYPE`
TCGA-N8-A4PI TCGA-N8-A4PQ TCGA-N8-A56S TCGA-ND-A4WC 
       14.63         4.77         9.70        15.16 

  AMP PEAK  8(6P24.2) MUTATED AMP PEAK  8(6P24.2) WILD-TYPE 
                         5.49                          4.77 
  AMP PEAK  8(6P24.2) MUTATED AMP PEAK  8(6P24.2) WILD-TYPE 
                        69.63                         15.16 
  AMP PEAK  8(6P24.2) MUTATED AMP PEAK  8(6P24.2) WILD-TYPE 
                       14.170                        12.165 
[1] "5.5 - 69.6 (14.2)" "4.8 - 15.2 (12.2)"
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"AMP PEAK  8(6P24.2) WILD-TYPE"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
"AMP PEAK  8(6P24.2) WILD-TYPE" "AMP PEAK  8(6P24.2) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"AMP PEAK  8(6P24.2) WILD-TYPE"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"AMP PEAK  8(6P24.2) WILD-TYPE"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
"AMP PEAK  8(6P24.2) WILD-TYPE" "AMP PEAK  8(6P24.2) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"AMP PEAK  8(6P24.2) WILD-TYPE"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"AMP PEAK  8(6P24.2) WILD-TYPE"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
"AMP PEAK  8(6P24.2) WILD-TYPE" "AMP PEAK  8(6P24.2) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"AMP PEAK  8(6P24.2) WILD-TYPE"   "AMP PEAK  8(6P24.2) MUTATED" 
[1] "hr=" "1"  
D8V2, continuous

Clustering(9) Variable = AMP PEAK  9(8P11.21) MUTATION ANALYSIS
D9V1, survival
                                sevent
clus2                            0 1
  AMP PEAK  9(8P11.21) MUTATED   2 1
  AMP PEAK  9(8P11.21) WILD-TYPE 7 4
  AMP PEAK  9(8P11.21) MUTATED AMP PEAK  9(8P11.21) WILD-TYPE 
                             3                             11 
  AMP PEAK  9(8P11.21) MUTATED AMP PEAK  9(8P11.21) WILD-TYPE 
                             1                              4 
$`AMP PEAK  9(8P11.21) MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PO 
       69.63        14.63        14.40 

$`AMP PEAK  9(8P11.21) WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ 
       59.70        13.71        16.34        13.94         7.20         4.77 
TCGA-N8-A56S TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
        9.70        10.42        23.47        15.16         5.49 

  AMP PEAK  9(8P11.21) MUTATED AMP PEAK  9(8P11.21) WILD-TYPE 
                         14.40                           4.77 
  AMP PEAK  9(8P11.21) MUTATED AMP PEAK  9(8P11.21) WILD-TYPE 
                         69.63                          59.70 
  AMP PEAK  9(8P11.21) MUTATED AMP PEAK  9(8P11.21) WILD-TYPE 
                         14.63                          13.71 
[1] "14.4 - 69.6 (14.6)" "4.8 - 59.7 (13.7)" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "AMP PEAK  9(8P11.21) MUTATED" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "AMP PEAK  9(8P11.21) MUTATED" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"AMP PEAK  9(8P11.21) WILD-TYPE" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "AMP PEAK  9(8P11.21) MUTATED" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"AMP PEAK  9(8P11.21) WILD-TYPE" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"AMP PEAK  9(8P11.21) WILD-TYPE" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK  9(8P11.21) WILD-TYPE" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "AMP PEAK  9(8P11.21) MUTATED" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "AMP PEAK  9(8P11.21) MUTATED" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"AMP PEAK  9(8P11.21) WILD-TYPE" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "AMP PEAK  9(8P11.21) MUTATED" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"AMP PEAK  9(8P11.21) WILD-TYPE" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"AMP PEAK  9(8P11.21) WILD-TYPE" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK  9(8P11.21) WILD-TYPE" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "AMP PEAK  9(8P11.21) MUTATED" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "AMP PEAK  9(8P11.21) MUTATED" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"AMP PEAK  9(8P11.21) WILD-TYPE" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "AMP PEAK  9(8P11.21) MUTATED" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"AMP PEAK  9(8P11.21) WILD-TYPE" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"AMP PEAK  9(8P11.21) WILD-TYPE" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK  9(8P11.21) WILD-TYPE" "AMP PEAK  9(8P11.21) WILD-TYPE" 
[1] "hr=" "1.8"
D9V2, continuous

Clustering(10) Variable = AMP PEAK 10(8Q11.23) MUTATION ANALYSIS
D10V1, survival
                                sevent
clus2                            0 1
  AMP PEAK 10(8Q11.23) MUTATED   4 2
  AMP PEAK 10(8Q11.23) WILD-TYPE 5 3
  AMP PEAK 10(8Q11.23) MUTATED AMP PEAK 10(8Q11.23) WILD-TYPE 
                             6                              8 
  AMP PEAK 10(8Q11.23) MUTATED AMP PEAK 10(8Q11.23) WILD-TYPE 
                             2                              3 
$`AMP PEAK 10(8Q11.23) MUTATED`
TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-ND-A4W6 
       59.70        14.63        14.40         7.20         4.77        10.42 

$`AMP PEAK 10(8Q11.23) WILD-TYPE`
TCGA-N5-A4RT TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A56S TCGA-ND-A4WA 
       69.63        13.71        16.34        13.94         9.70        23.47 
TCGA-ND-A4WC TCGA-ND-A4WF 
       15.16         5.49 

  AMP PEAK 10(8Q11.23) MUTATED AMP PEAK 10(8Q11.23) WILD-TYPE 
                          4.77                           5.49 
  AMP PEAK 10(8Q11.23) MUTATED AMP PEAK 10(8Q11.23) WILD-TYPE 
                         59.70                          69.63 
  AMP PEAK 10(8Q11.23) MUTATED AMP PEAK 10(8Q11.23) WILD-TYPE 
                         12.41                          14.55 
[1] "4.8 - 59.7 (12.4)" "5.5 - 69.6 (14.6)"
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"AMP PEAK 10(8Q11.23) WILD-TYPE"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "AMP PEAK 10(8Q11.23) MUTATED" "AMP PEAK 10(8Q11.23) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"AMP PEAK 10(8Q11.23) WILD-TYPE" "AMP PEAK 10(8Q11.23) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "AMP PEAK 10(8Q11.23) MUTATED"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "AMP PEAK 10(8Q11.23) MUTATED" "AMP PEAK 10(8Q11.23) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 10(8Q11.23) MUTATED" "AMP PEAK 10(8Q11.23) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 10(8Q11.23) WILD-TYPE" "AMP PEAK 10(8Q11.23) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"AMP PEAK 10(8Q11.23) WILD-TYPE"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "AMP PEAK 10(8Q11.23) MUTATED" "AMP PEAK 10(8Q11.23) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"AMP PEAK 10(8Q11.23) WILD-TYPE" "AMP PEAK 10(8Q11.23) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "AMP PEAK 10(8Q11.23) MUTATED"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "AMP PEAK 10(8Q11.23) MUTATED" "AMP PEAK 10(8Q11.23) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 10(8Q11.23) MUTATED" "AMP PEAK 10(8Q11.23) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 10(8Q11.23) WILD-TYPE" "AMP PEAK 10(8Q11.23) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"AMP PEAK 10(8Q11.23) WILD-TYPE"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "AMP PEAK 10(8Q11.23) MUTATED" "AMP PEAK 10(8Q11.23) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"AMP PEAK 10(8Q11.23) WILD-TYPE" "AMP PEAK 10(8Q11.23) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "AMP PEAK 10(8Q11.23) MUTATED"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "AMP PEAK 10(8Q11.23) MUTATED" "AMP PEAK 10(8Q11.23) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 10(8Q11.23) MUTATED" "AMP PEAK 10(8Q11.23) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 10(8Q11.23) WILD-TYPE" "AMP PEAK 10(8Q11.23) WILD-TYPE" 
[1] "hr=" "1.2"
D10V2, continuous

Clustering(11) Variable = AMP PEAK 11(8Q24.21) MUTATION ANALYSIS
D11V1, survival
                                sevent
clus2                            0 1
  AMP PEAK 11(8Q24.21) MUTATED   7 4
  AMP PEAK 11(8Q24.21) WILD-TYPE 2 1
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                            11                              3 
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                             4                              1 
$`AMP PEAK 11(8Q24.21) MUTATED`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP 
       69.63        59.70        14.63        16.34        14.40         7.20 
TCGA-N8-A4PQ TCGA-N8-A56S TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF 
        4.77         9.70        10.42        23.47         5.49 

$`AMP PEAK 11(8Q24.21) WILD-TYPE`
TCGA-N8-A4PL TCGA-N8-A4PN TCGA-ND-A4WC 
       13.71        13.94        15.16 

  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                          4.77                          13.71 
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                         69.63                          15.16 
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                         14.40                          13.94 
[1] "4.8 - 69.6 (14.4)"  "13.7 - 15.2 (13.9)"
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
[1] "hr=" "1"  
D11V2, continuous

Clustering(12) Variable = AMP PEAK 12(8Q24.21) MUTATION ANALYSIS
D12V1, survival
                                sevent
clus2                            0 1
  AMP PEAK 12(8Q24.21) MUTATED   6 4
  AMP PEAK 12(8Q24.21) WILD-TYPE 3 1
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                            10                              4 
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                             4                              1 
$`AMP PEAK 12(8Q24.21) MUTATED`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP 
       69.63        59.70        14.63        16.34        14.40         7.20 
TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF 
        4.77        10.42        23.47         5.49 

$`AMP PEAK 12(8Q24.21) WILD-TYPE`
TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A56S TCGA-ND-A4WC 
       13.71        13.94         9.70        15.16 

  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                          4.77                           9.70 
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                         69.63                          15.16 
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                        14.515                         13.825 
[1] "4.8 - 69.6 (14.5)" "9.7 - 15.2 (13.8)"
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
[1] "hr=" "1.2"
D12V2, continuous

Clustering(13) Variable = AMP PEAK 13(10Q22.2) MUTATION ANALYSIS
D13V1, survival
                                sevent
clus2                            0 1
  AMP PEAK 13(10Q22.2) MUTATED   4 4
  AMP PEAK 13(10Q22.2) WILD-TYPE 5 1
  AMP PEAK 13(10Q22.2) MUTATED AMP PEAK 13(10Q22.2) WILD-TYPE 
                             8                              6 
  AMP PEAK 13(10Q22.2) MUTATED AMP PEAK 13(10Q22.2) WILD-TYPE 
                             4                              1 
$`AMP PEAK 13(10Q22.2) MUTATED`
TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PQ 
       59.70        14.63        13.71        13.94        14.40         4.77 
TCGA-ND-A4WA TCGA-ND-A4WF 
       23.47         5.49 

$`AMP PEAK 13(10Q22.2) WILD-TYPE`
TCGA-N5-A4RT TCGA-N8-A4PM TCGA-N8-A4PP TCGA-N8-A56S TCGA-ND-A4W6 TCGA-ND-A4WC 
       69.63        16.34         7.20         9.70        10.42        15.16 

  AMP PEAK 13(10Q22.2) MUTATED AMP PEAK 13(10Q22.2) WILD-TYPE 
                          4.77                           7.20 
  AMP PEAK 13(10Q22.2) MUTATED AMP PEAK 13(10Q22.2) WILD-TYPE 
                         59.70                          69.63 
  AMP PEAK 13(10Q22.2) MUTATED AMP PEAK 13(10Q22.2) WILD-TYPE 
                         14.17                          12.79 
[1] "4.8 - 59.7 (14.2)" "7.2 - 69.6 (12.8)"
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "AMP PEAK 13(10Q22.2) MUTATED"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "AMP PEAK 13(10Q22.2) MUTATED" "AMP PEAK 13(10Q22.2) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "AMP PEAK 13(10Q22.2) MUTATED" "AMP PEAK 13(10Q22.2) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "AMP PEAK 13(10Q22.2) MUTATED"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "AMP PEAK 13(10Q22.2) MUTATED" "AMP PEAK 13(10Q22.2) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "AMP PEAK 13(10Q22.2) MUTATED" "AMP PEAK 13(10Q22.2) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "AMP PEAK 13(10Q22.2) MUTATED"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "AMP PEAK 13(10Q22.2) MUTATED" "AMP PEAK 13(10Q22.2) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "AMP PEAK 13(10Q22.2) MUTATED" "AMP PEAK 13(10Q22.2) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
[1] "hr=" "2.8"
D13V2, continuous

Clustering(14) Variable = AMP PEAK 14(11Q13.1) MUTATION ANALYSIS
D14V1, survival
                                sevent
clus2                            0 1
  AMP PEAK 14(11Q13.1) MUTATED   5 1
  AMP PEAK 14(11Q13.1) WILD-TYPE 4 4
  AMP PEAK 14(11Q13.1) MUTATED AMP PEAK 14(11Q13.1) WILD-TYPE 
                             6                              8 
  AMP PEAK 14(11Q13.1) MUTATED AMP PEAK 14(11Q13.1) WILD-TYPE 
                             1                              4 
$`AMP PEAK 14(11Q13.1) MUTATED`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A56S TCGA-ND-A4WF 
       69.63        59.70        13.94         7.20         9.70         5.49 

$`AMP PEAK 14(11Q13.1) WILD-TYPE`
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-ND-A4W6 
       14.63        13.71        16.34        14.40         4.77        10.42 
TCGA-ND-A4WA TCGA-ND-A4WC 
       23.47        15.16 

  AMP PEAK 14(11Q13.1) MUTATED AMP PEAK 14(11Q13.1) WILD-TYPE 
                          5.49                           4.77 
  AMP PEAK 14(11Q13.1) MUTATED AMP PEAK 14(11Q13.1) WILD-TYPE 
                         69.63                          23.47 
  AMP PEAK 14(11Q13.1) MUTATED AMP PEAK 14(11Q13.1) WILD-TYPE 
                        11.820                         14.515 
[1] "5.5 - 69.6 (11.8)" "4.8 - 23.5 (14.5)"
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "AMP PEAK 14(11Q13.1) MUTATED"   "AMP PEAK 14(11Q13.1) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"AMP PEAK 14(11Q13.1) WILD-TYPE" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"AMP PEAK 14(11Q13.1) WILD-TYPE"   "AMP PEAK 14(11Q13.1) MUTATED" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
"AMP PEAK 14(11Q13.1) WILD-TYPE"   "AMP PEAK 14(11Q13.1) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"AMP PEAK 14(11Q13.1) WILD-TYPE"   "AMP PEAK 14(11Q13.1) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"AMP PEAK 14(11Q13.1) WILD-TYPE" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 14(11Q13.1) WILD-TYPE"   "AMP PEAK 14(11Q13.1) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "AMP PEAK 14(11Q13.1) MUTATED"   "AMP PEAK 14(11Q13.1) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"AMP PEAK 14(11Q13.1) WILD-TYPE" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"AMP PEAK 14(11Q13.1) WILD-TYPE"   "AMP PEAK 14(11Q13.1) MUTATED" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
"AMP PEAK 14(11Q13.1) WILD-TYPE"   "AMP PEAK 14(11Q13.1) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"AMP PEAK 14(11Q13.1) WILD-TYPE"   "AMP PEAK 14(11Q13.1) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"AMP PEAK 14(11Q13.1) WILD-TYPE" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 14(11Q13.1) WILD-TYPE"   "AMP PEAK 14(11Q13.1) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "AMP PEAK 14(11Q13.1) MUTATED"   "AMP PEAK 14(11Q13.1) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"AMP PEAK 14(11Q13.1) WILD-TYPE" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"AMP PEAK 14(11Q13.1) WILD-TYPE"   "AMP PEAK 14(11Q13.1) MUTATED" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
"AMP PEAK 14(11Q13.1) WILD-TYPE"   "AMP PEAK 14(11Q13.1) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"AMP PEAK 14(11Q13.1) WILD-TYPE"   "AMP PEAK 14(11Q13.1) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"AMP PEAK 14(11Q13.1) WILD-TYPE" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 14(11Q13.1) WILD-TYPE"   "AMP PEAK 14(11Q13.1) MUTATED" 
[1] "hr=" "3.1"
D14V2, continuous

Clustering(15) Variable = AMP PEAK 15(12Q12) MUTATION ANALYSIS
D15V1, survival
                              sevent
clus2                          0 1
  AMP PEAK 15(12Q12) MUTATED   5 0
  AMP PEAK 15(12Q12) WILD-TYPE 4 5
  AMP PEAK 15(12Q12) MUTATED AMP PEAK 15(12Q12) WILD-TYPE 
                           5                            9 
  AMP PEAK 15(12Q12) MUTATED AMP PEAK 15(12Q12) WILD-TYPE 
                           0                            5 
$`AMP PEAK 15(12Q12) MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S 
       69.63        13.94        14.40         7.20         9.70 

$`AMP PEAK 15(12Q12) WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PQ TCGA-ND-A4W6 
       59.70        14.63        13.71        16.34         4.77        10.42 
TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
       23.47        15.16         5.49 

  AMP PEAK 15(12Q12) MUTATED AMP PEAK 15(12Q12) WILD-TYPE 
                        7.20                         4.77 
  AMP PEAK 15(12Q12) MUTATED AMP PEAK 15(12Q12) WILD-TYPE 
                       69.63                        59.70 
  AMP PEAK 15(12Q12) MUTATED AMP PEAK 15(12Q12) WILD-TYPE 
                       13.94                        14.63 
[1] "7.2 - 69.6 (13.9)" "4.8 - 59.7 (14.6)"
                  TCGA-N5-A4RT                   TCGA-N5-A4RV 
  "AMP PEAK 15(12Q12) MUTATED" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-N8-A4PI                   TCGA-N8-A4PL 
"AMP PEAK 15(12Q12) WILD-TYPE" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-N8-A4PM                   TCGA-N8-A4PN 
"AMP PEAK 15(12Q12) WILD-TYPE"   "AMP PEAK 15(12Q12) MUTATED" 
                  TCGA-N8-A4PO                   TCGA-N8-A4PP 
  "AMP PEAK 15(12Q12) MUTATED"   "AMP PEAK 15(12Q12) MUTATED" 
                  TCGA-N8-A4PQ                   TCGA-N8-A56S 
"AMP PEAK 15(12Q12) WILD-TYPE"   "AMP PEAK 15(12Q12) MUTATED" 
                  TCGA-ND-A4W6                   TCGA-ND-A4WA 
"AMP PEAK 15(12Q12) WILD-TYPE" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-ND-A4WC                   TCGA-ND-A4WF 
"AMP PEAK 15(12Q12) WILD-TYPE" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-N5-A4RT                   TCGA-N5-A4RV 
  "AMP PEAK 15(12Q12) MUTATED" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-N8-A4PI                   TCGA-N8-A4PL 
"AMP PEAK 15(12Q12) WILD-TYPE" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-N8-A4PM                   TCGA-N8-A4PN 
"AMP PEAK 15(12Q12) WILD-TYPE"   "AMP PEAK 15(12Q12) MUTATED" 
                  TCGA-N8-A4PO                   TCGA-N8-A4PP 
  "AMP PEAK 15(12Q12) MUTATED"   "AMP PEAK 15(12Q12) MUTATED" 
                  TCGA-N8-A4PQ                   TCGA-N8-A56S 
"AMP PEAK 15(12Q12) WILD-TYPE"   "AMP PEAK 15(12Q12) MUTATED" 
                  TCGA-ND-A4W6                   TCGA-ND-A4WA 
"AMP PEAK 15(12Q12) WILD-TYPE" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-ND-A4WC                   TCGA-ND-A4WF 
"AMP PEAK 15(12Q12) WILD-TYPE" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-N5-A4RT                   TCGA-N5-A4RV 
  "AMP PEAK 15(12Q12) MUTATED" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-N8-A4PI                   TCGA-N8-A4PL 
"AMP PEAK 15(12Q12) WILD-TYPE" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-N8-A4PM                   TCGA-N8-A4PN 
"AMP PEAK 15(12Q12) WILD-TYPE"   "AMP PEAK 15(12Q12) MUTATED" 
                  TCGA-N8-A4PO                   TCGA-N8-A4PP 
  "AMP PEAK 15(12Q12) MUTATED"   "AMP PEAK 15(12Q12) MUTATED" 
                  TCGA-N8-A4PQ                   TCGA-N8-A56S 
"AMP PEAK 15(12Q12) WILD-TYPE"   "AMP PEAK 15(12Q12) MUTATED" 
                  TCGA-ND-A4W6                   TCGA-ND-A4WA 
"AMP PEAK 15(12Q12) WILD-TYPE" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-ND-A4WC                   TCGA-ND-A4WF 
"AMP PEAK 15(12Q12) WILD-TYPE" "AMP PEAK 15(12Q12) WILD-TYPE" 
[1] "hr="     "9.2e+08"
D15V2, continuous

Clustering(16) Variable = AMP PEAK 16(12Q15) MUTATION ANALYSIS
D16V1, survival
                              sevent
clus2                          0 1
  AMP PEAK 16(12Q15) MUTATED   3 3
  AMP PEAK 16(12Q15) WILD-TYPE 6 2
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                           6                            8 
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                           3                            2 
$`AMP PEAK 16(12Q15) MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PL TCGA-N8-A4PP TCGA-N8-A56S TCGA-ND-A4W6 TCGA-ND-A4WF 
       69.63        13.71         7.20         9.70        10.42         5.49 

$`AMP PEAK 16(12Q15) WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PQ 
       59.70        14.63        16.34        13.94        14.40         4.77 
TCGA-ND-A4WA TCGA-ND-A4WC 
       23.47        15.16 

  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                        5.49                         4.77 
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                       69.63                        59.70 
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                      10.060                       14.895 
[1] "5.5 - 69.6 (10.1)" "4.8 - 59.7 (14.9)"
                  TCGA-N5-A4RT                   TCGA-N5-A4RV 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N8-A4PI                   TCGA-N8-A4PL 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-N8-A4PM                   TCGA-N8-A4PN 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N8-A4PO                   TCGA-N8-A4PP 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-N8-A4PQ                   TCGA-N8-A56S 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-ND-A4W6                   TCGA-ND-A4WA 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-ND-A4WC                   TCGA-ND-A4WF 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-N5-A4RT                   TCGA-N5-A4RV 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N8-A4PI                   TCGA-N8-A4PL 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-N8-A4PM                   TCGA-N8-A4PN 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N8-A4PO                   TCGA-N8-A4PP 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-N8-A4PQ                   TCGA-N8-A56S 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-ND-A4W6                   TCGA-ND-A4WA 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-ND-A4WC                   TCGA-ND-A4WF 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-N5-A4RT                   TCGA-N5-A4RV 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N8-A4PI                   TCGA-N8-A4PL 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-N8-A4PM                   TCGA-N8-A4PN 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N8-A4PO                   TCGA-N8-A4PP 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-N8-A4PQ                   TCGA-N8-A56S 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-ND-A4W6                   TCGA-ND-A4WA 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-ND-A4WC                   TCGA-ND-A4WF 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
[1] "hr=" "3.8"
D16V2, continuous

Clustering(17) Variable = AMP PEAK 17(13Q31.3) MUTATION ANALYSIS
D17V1, survival
                                sevent
clus2                            0 1
  AMP PEAK 17(13Q31.3) MUTATED   3 3
  AMP PEAK 17(13Q31.3) WILD-TYPE 6 2
  AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE 
                             6                              8 
  AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE 
                             3                              2 
$`AMP PEAK 17(13Q31.3) MUTATED`
TCGA-N5-A4RV TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-ND-A4W6 TCGA-ND-A4WA 
       59.70        13.71        16.34        13.94        10.42        23.47 

$`AMP PEAK 17(13Q31.3) WILD-TYPE`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S 
       69.63        14.63        14.40         7.20         4.77         9.70 
TCGA-ND-A4WC TCGA-ND-A4WF 
       15.16         5.49 

  AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE 
                         10.42                           4.77 
  AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE 
                         59.70                          69.63 
  AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE 
                         15.14                          12.05 
[1] "10.4 - 59.7 (15.1)" "4.8 - 69.6 (12.1)" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "AMP PEAK 17(13Q31.3) MUTATED"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 17(13Q31.3) MUTATED"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "AMP PEAK 17(13Q31.3) MUTATED"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 17(13Q31.3) MUTATED"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "AMP PEAK 17(13Q31.3) MUTATED"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 17(13Q31.3) MUTATED"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
[1] "hr=" "1.2"
D17V2, continuous

Clustering(18) Variable = AMP PEAK 18(16P11.2) MUTATION ANALYSIS
D18V1, survival
                                sevent
clus2                            0 1
  AMP PEAK 18(16P11.2) MUTATED   2 1
  AMP PEAK 18(16P11.2) WILD-TYPE 7 4
  AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE 
                             3                             11 
  AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE 
                             1                              4 
$`AMP PEAK 18(16P11.2) MUTATED`
TCGA-N8-A4PN TCGA-N8-A56S TCGA-ND-A4WF 
       13.94         9.70         5.49 

$`AMP PEAK 18(16P11.2) WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PO 
       69.63        59.70        14.63        13.71        16.34        14.40 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC 
        7.20         4.77        10.42        23.47        15.16 

  AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE 
                          5.49                           4.77 
  AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE 
                         13.94                          69.63 
  AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE 
                          9.70                          14.63 
[1] "5.5 - 13.9 (9.7)"  "4.8 - 69.6 (14.6)"
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
[1] "hr=" "3"  
D18V2, continuous

Clustering(19) Variable = AMP PEAK 19(17Q12) MUTATION ANALYSIS
D19V1, survival
                              sevent
clus2                          0 1
  AMP PEAK 19(17Q12) MUTATED   6 4
  AMP PEAK 19(17Q12) WILD-TYPE 3 1
  AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE 
                          10                            4 
  AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE 
                           4                            1 
$`AMP PEAK 19(17Q12) MUTATED`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN 
       69.63        59.70        14.63        13.71        16.34        13.94 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WA 
        7.20         4.77        10.42        23.47 

$`AMP PEAK 19(17Q12) WILD-TYPE`
TCGA-N8-A4PO TCGA-N8-A56S TCGA-ND-A4WC TCGA-ND-A4WF 
       14.40         9.70        15.16         5.49 

  AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE 
                        4.77                         5.49 
  AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE 
                       69.63                        15.16 
  AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE 
                      14.285                       12.050 
[1] "4.8 - 69.6 (14.3)" "5.5 - 15.2 (12.1)"
                  TCGA-N5-A4RT                   TCGA-N5-A4RV 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-N8-A4PI                   TCGA-N8-A4PL 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-N8-A4PM                   TCGA-N8-A4PN 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-N8-A4PO                   TCGA-N8-A4PP 
"AMP PEAK 19(17Q12) WILD-TYPE"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-N8-A4PQ                   TCGA-N8-A56S 
  "AMP PEAK 19(17Q12) MUTATED" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-ND-A4W6                   TCGA-ND-A4WA 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-ND-A4WC                   TCGA-ND-A4WF 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-N5-A4RT                   TCGA-N5-A4RV 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-N8-A4PI                   TCGA-N8-A4PL 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-N8-A4PM                   TCGA-N8-A4PN 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-N8-A4PO                   TCGA-N8-A4PP 
"AMP PEAK 19(17Q12) WILD-TYPE"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-N8-A4PQ                   TCGA-N8-A56S 
  "AMP PEAK 19(17Q12) MUTATED" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-ND-A4W6                   TCGA-ND-A4WA 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-ND-A4WC                   TCGA-ND-A4WF 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-N5-A4RT                   TCGA-N5-A4RV 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-N8-A4PI                   TCGA-N8-A4PL 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-N8-A4PM                   TCGA-N8-A4PN 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-N8-A4PO                   TCGA-N8-A4PP 
"AMP PEAK 19(17Q12) WILD-TYPE"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-N8-A4PQ                   TCGA-N8-A56S 
  "AMP PEAK 19(17Q12) MUTATED" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-ND-A4W6                   TCGA-ND-A4WA 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-ND-A4WC                   TCGA-ND-A4WF 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
[1] "hr=" "1.2"
D19V2, continuous

Clustering(20) Variable = AMP PEAK 20(17Q25.1) MUTATION ANALYSIS
D20V1, survival
                                sevent
clus2                            0 1
  AMP PEAK 20(17Q25.1) MUTATED   5 2
  AMP PEAK 20(17Q25.1) WILD-TYPE 4 3
  AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE 
                             7                              7 
  AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE 
                             2                              3 
$`AMP PEAK 20(17Q25.1) MUTATED`
TCGA-N5-A4RV TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-ND-A4W6 
       59.70        16.34        13.94        14.40         4.77        10.42 
TCGA-ND-A4WA 
       23.47 

$`AMP PEAK 20(17Q25.1) WILD-TYPE`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PP TCGA-N8-A56S TCGA-ND-A4WC 
       69.63        14.63        13.71         7.20         9.70        15.16 
TCGA-ND-A4WF 
        5.49 

  AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE 
                          4.77                           5.49 
  AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE 
                         59.70                          69.63 
  AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE 
                         14.40                          13.71 
[1] "4.8 - 59.7 (14.4)" "5.5 - 69.6 (13.7)"
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"AMP PEAK 20(17Q25.1) WILD-TYPE"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"AMP PEAK 20(17Q25.1) WILD-TYPE" "AMP PEAK 20(17Q25.1) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "AMP PEAK 20(17Q25.1) MUTATED"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "AMP PEAK 20(17Q25.1) MUTATED" "AMP PEAK 20(17Q25.1) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "AMP PEAK 20(17Q25.1) MUTATED" "AMP PEAK 20(17Q25.1) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 20(17Q25.1) MUTATED"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 20(17Q25.1) WILD-TYPE" "AMP PEAK 20(17Q25.1) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"AMP PEAK 20(17Q25.1) WILD-TYPE"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"AMP PEAK 20(17Q25.1) WILD-TYPE" "AMP PEAK 20(17Q25.1) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "AMP PEAK 20(17Q25.1) MUTATED"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "AMP PEAK 20(17Q25.1) MUTATED" "AMP PEAK 20(17Q25.1) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "AMP PEAK 20(17Q25.1) MUTATED" "AMP PEAK 20(17Q25.1) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 20(17Q25.1) MUTATED"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 20(17Q25.1) WILD-TYPE" "AMP PEAK 20(17Q25.1) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"AMP PEAK 20(17Q25.1) WILD-TYPE"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"AMP PEAK 20(17Q25.1) WILD-TYPE" "AMP PEAK 20(17Q25.1) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "AMP PEAK 20(17Q25.1) MUTATED"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "AMP PEAK 20(17Q25.1) MUTATED" "AMP PEAK 20(17Q25.1) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "AMP PEAK 20(17Q25.1) MUTATED" "AMP PEAK 20(17Q25.1) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 20(17Q25.1) MUTATED"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 20(17Q25.1) WILD-TYPE" "AMP PEAK 20(17Q25.1) WILD-TYPE" 
[1] "hr=" "1.9"
D20V2, continuous

Clustering(21) Variable = AMP PEAK 21(19P13.2) MUTATION ANALYSIS
D21V1, survival
                                sevent
clus2                            0 1
  AMP PEAK 21(19P13.2) MUTATED   3 0
  AMP PEAK 21(19P13.2) WILD-TYPE 6 5
  AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE 
                             3                             11 
  AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE 
                             0                              5 
$`AMP PEAK 21(19P13.2) MUTATED`
TCGA-N5-A4RV TCGA-N8-A4PO TCGA-N8-A4PP 
        59.7         14.4          7.2 

$`AMP PEAK 21(19P13.2) WILD-TYPE`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PQ 
       69.63        14.63        13.71        16.34        13.94         4.77 
TCGA-N8-A56S TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
        9.70        10.42        23.47        15.16         5.49 

  AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE 
                          7.20                           4.77 
  AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE 
                         59.70                          69.63 
  AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE 
                         14.40                          13.94 
[1] "7.2 - 59.7 (14.4)" "4.8 - 69.6 (13.9)"
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"AMP PEAK 21(19P13.2) WILD-TYPE"   "AMP PEAK 21(19P13.2) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "AMP PEAK 21(19P13.2) MUTATED"   "AMP PEAK 21(19P13.2) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"AMP PEAK 21(19P13.2) WILD-TYPE"   "AMP PEAK 21(19P13.2) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "AMP PEAK 21(19P13.2) MUTATED"   "AMP PEAK 21(19P13.2) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"AMP PEAK 21(19P13.2) WILD-TYPE"   "AMP PEAK 21(19P13.2) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "AMP PEAK 21(19P13.2) MUTATED"   "AMP PEAK 21(19P13.2) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
[1] "hr="     "7.7e+08"
D21V2, continuous

Clustering(22) Variable = AMP PEAK 25(XP11.21) MUTATION ANALYSIS
D22V1, survival
                                sevent
clus2                            0 1
  AMP PEAK 25(XP11.21) MUTATED   2 2
  AMP PEAK 25(XP11.21) WILD-TYPE 7 3
  AMP PEAK 25(XP11.21) MUTATED AMP PEAK 25(XP11.21) WILD-TYPE 
                             4                             10 
  AMP PEAK 25(XP11.21) MUTATED AMP PEAK 25(XP11.21) WILD-TYPE 
                             2                              3 
$`AMP PEAK 25(XP11.21) MUTATED`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-ND-A4W6 
       69.63        59.70        14.63        10.42 

$`AMP PEAK 25(XP11.21) WILD-TYPE`
TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ 
       13.71        16.34        13.94        14.40         7.20         4.77 
TCGA-N8-A56S TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
        9.70        23.47        15.16         5.49 

  AMP PEAK 25(XP11.21) MUTATED AMP PEAK 25(XP11.21) WILD-TYPE 
                         10.42                           4.77 
  AMP PEAK 25(XP11.21) MUTATED AMP PEAK 25(XP11.21) WILD-TYPE 
                         69.63                          23.47 
  AMP PEAK 25(XP11.21) MUTATED AMP PEAK 25(XP11.21) WILD-TYPE 
                        37.165                         13.825 
[1] "10.4 - 69.6 (37.2)" "4.8 - 23.5 (13.8)" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "AMP PEAK 25(XP11.21) MUTATED"   "AMP PEAK 25(XP11.21) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "AMP PEAK 25(XP11.21) MUTATED" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"AMP PEAK 25(XP11.21) WILD-TYPE" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
"AMP PEAK 25(XP11.21) WILD-TYPE" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"AMP PEAK 25(XP11.21) WILD-TYPE" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 25(XP11.21) MUTATED" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 25(XP11.21) WILD-TYPE" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "AMP PEAK 25(XP11.21) MUTATED"   "AMP PEAK 25(XP11.21) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "AMP PEAK 25(XP11.21) MUTATED" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"AMP PEAK 25(XP11.21) WILD-TYPE" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
"AMP PEAK 25(XP11.21) WILD-TYPE" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"AMP PEAK 25(XP11.21) WILD-TYPE" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 25(XP11.21) MUTATED" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 25(XP11.21) WILD-TYPE" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "AMP PEAK 25(XP11.21) MUTATED"   "AMP PEAK 25(XP11.21) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "AMP PEAK 25(XP11.21) MUTATED" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"AMP PEAK 25(XP11.21) WILD-TYPE" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
"AMP PEAK 25(XP11.21) WILD-TYPE" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"AMP PEAK 25(XP11.21) WILD-TYPE" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 25(XP11.21) MUTATED" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 25(XP11.21) WILD-TYPE" "AMP PEAK 25(XP11.21) WILD-TYPE" 
[1] "hr=" "1.2"
D22V2, continuous

Clustering(23) Variable = DEL PEAK  1(1P36.21) MUTATION ANALYSIS
D23V1, survival
                                sevent
clus2                            0 1
  DEL PEAK  1(1P36.21) MUTATED   4 1
  DEL PEAK  1(1P36.21) WILD-TYPE 5 4
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                             5                              9 
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                             1                              4 
$`DEL PEAK  1(1P36.21) MUTATED`
TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-ND-A4WF 
       14.40         7.20         4.77         9.70         5.49 

$`DEL PEAK  1(1P36.21) WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN 
       69.63        59.70        14.63        13.71        16.34        13.94 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC 
       10.42        23.47        15.16 

  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                          4.77                          10.42 
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                         14.40                          69.63 
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                          7.20                          15.16 
[1] "4.8 - 14.4 (7.2)"   "10.4 - 69.6 (15.2)"
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "DEL PEAK  1(1P36.21) MUTATED"   "DEL PEAK  1(1P36.21) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "DEL PEAK  1(1P36.21) MUTATED"   "DEL PEAK  1(1P36.21) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK  1(1P36.21) WILD-TYPE"   "DEL PEAK  1(1P36.21) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "DEL PEAK  1(1P36.21) MUTATED"   "DEL PEAK  1(1P36.21) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "DEL PEAK  1(1P36.21) MUTATED"   "DEL PEAK  1(1P36.21) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK  1(1P36.21) WILD-TYPE"   "DEL PEAK  1(1P36.21) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "DEL PEAK  1(1P36.21) MUTATED"   "DEL PEAK  1(1P36.21) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "DEL PEAK  1(1P36.21) MUTATED"   "DEL PEAK  1(1P36.21) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK  1(1P36.21) WILD-TYPE"   "DEL PEAK  1(1P36.21) MUTATED" 
[1] "hr=" "2.6"
D23V2, continuous

Clustering(24) Variable = DEL PEAK  2(2Q22.1) MUTATION ANALYSIS
D24V1, survival
                               sevent
clus2                           0 1
  DEL PEAK  2(2Q22.1) MUTATED   0 3
  DEL PEAK  2(2Q22.1) WILD-TYPE 9 2
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                            3                            11 
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                            3                             2 
$`DEL PEAK  2(2Q22.1) MUTATED`
TCGA-N8-A4PI TCGA-ND-A4WA TCGA-ND-A4WF 
       14.63        23.47         5.49 

$`DEL PEAK  2(2Q22.1) WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO 
       69.63        59.70        13.71        16.34        13.94        14.40 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-ND-A4W6 TCGA-ND-A4WC 
        7.20         4.77         9.70        10.42        15.16 

  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                         5.49                          4.77 
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                        23.47                         69.63 
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                        14.63                         13.94 
[1] "5.5 - 23.5 (14.6)" "4.8 - 69.6 (13.9)"
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
[1] "hr=" "4.3"
D24V2, continuous

Clustering(25) Variable = DEL PEAK  3(3P21.1) MUTATION ANALYSIS
D25V1, survival
                               sevent
clus2                           0 1
  DEL PEAK  3(3P21.1) MUTATED   5 3
  DEL PEAK  3(3P21.1) WILD-TYPE 4 2
  DEL PEAK  3(3P21.1) MUTATED DEL PEAK  3(3P21.1) WILD-TYPE 
                            8                             6 
  DEL PEAK  3(3P21.1) MUTATED DEL PEAK  3(3P21.1) WILD-TYPE 
                            3                             2 
$`DEL PEAK  3(3P21.1) MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP 
       69.63        14.63        13.71        16.34        14.40         7.20 
TCGA-N8-A56S TCGA-ND-A4WF 
        9.70         5.49 

$`DEL PEAK  3(3P21.1) WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC 
       59.70        13.94         4.77        10.42        23.47        15.16 

  DEL PEAK  3(3P21.1) MUTATED DEL PEAK  3(3P21.1) WILD-TYPE 
                         5.49                          4.77 
  DEL PEAK  3(3P21.1) MUTATED DEL PEAK  3(3P21.1) WILD-TYPE 
                        69.63                         59.70 
  DEL PEAK  3(3P21.1) MUTATED DEL PEAK  3(3P21.1) WILD-TYPE 
                       14.055                        14.550 
[1] "5.5 - 69.6 (14.1)" "4.8 - 59.7 (14.6)"
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "DEL PEAK  3(3P21.1) MUTATED" "DEL PEAK  3(3P21.1) WILD-TYPE" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
  "DEL PEAK  3(3P21.1) MUTATED"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
  "DEL PEAK  3(3P21.1) MUTATED" "DEL PEAK  3(3P21.1) WILD-TYPE" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "DEL PEAK  3(3P21.1) MUTATED"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
"DEL PEAK  3(3P21.1) WILD-TYPE"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
"DEL PEAK  3(3P21.1) WILD-TYPE" "DEL PEAK  3(3P21.1) WILD-TYPE" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  3(3P21.1) WILD-TYPE"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "DEL PEAK  3(3P21.1) MUTATED" "DEL PEAK  3(3P21.1) WILD-TYPE" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
  "DEL PEAK  3(3P21.1) MUTATED"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
  "DEL PEAK  3(3P21.1) MUTATED" "DEL PEAK  3(3P21.1) WILD-TYPE" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "DEL PEAK  3(3P21.1) MUTATED"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
"DEL PEAK  3(3P21.1) WILD-TYPE"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
"DEL PEAK  3(3P21.1) WILD-TYPE" "DEL PEAK  3(3P21.1) WILD-TYPE" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  3(3P21.1) WILD-TYPE"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "DEL PEAK  3(3P21.1) MUTATED" "DEL PEAK  3(3P21.1) WILD-TYPE" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
  "DEL PEAK  3(3P21.1) MUTATED"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
  "DEL PEAK  3(3P21.1) MUTATED" "DEL PEAK  3(3P21.1) WILD-TYPE" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "DEL PEAK  3(3P21.1) MUTATED"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
"DEL PEAK  3(3P21.1) WILD-TYPE"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
"DEL PEAK  3(3P21.1) WILD-TYPE" "DEL PEAK  3(3P21.1) WILD-TYPE" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  3(3P21.1) WILD-TYPE"   "DEL PEAK  3(3P21.1) MUTATED" 
[1] "hr=" "1.5"
D25V2, continuous

Clustering(26) Variable = DEL PEAK  4(3P14.1) MUTATION ANALYSIS
D26V1, survival
                               sevent
clus2                           0 1
  DEL PEAK  4(3P14.1) MUTATED   4 3
  DEL PEAK  4(3P14.1) WILD-TYPE 5 2
  DEL PEAK  4(3P14.1) MUTATED DEL PEAK  4(3P14.1) WILD-TYPE 
                            7                             7 
  DEL PEAK  4(3P14.1) MUTATED DEL PEAK  4(3P14.1) WILD-TYPE 
                            3                             2 
$`DEL PEAK  4(3P14.1) MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S 
       69.63        14.63        13.71        14.40         7.20         9.70 
TCGA-ND-A4WF 
        5.49 

$`DEL PEAK  4(3P14.1) WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WA 
       59.70        16.34        13.94         4.77        10.42        23.47 
TCGA-ND-A4WC 
       15.16 

  DEL PEAK  4(3P14.1) MUTATED DEL PEAK  4(3P14.1) WILD-TYPE 
                         5.49                          4.77 
  DEL PEAK  4(3P14.1) MUTATED DEL PEAK  4(3P14.1) WILD-TYPE 
                        69.63                         59.70 
  DEL PEAK  4(3P14.1) MUTATED DEL PEAK  4(3P14.1) WILD-TYPE 
                        13.71                         15.16 
[1] "5.5 - 69.6 (13.7)" "4.8 - 59.7 (15.2)"
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "DEL PEAK  4(3P14.1) MUTATED" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
  "DEL PEAK  4(3P14.1) MUTATED"   "DEL PEAK  4(3P14.1) MUTATED" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
"DEL PEAK  4(3P14.1) WILD-TYPE" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "DEL PEAK  4(3P14.1) MUTATED"   "DEL PEAK  4(3P14.1) MUTATED" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
"DEL PEAK  4(3P14.1) WILD-TYPE"   "DEL PEAK  4(3P14.1) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
"DEL PEAK  4(3P14.1) WILD-TYPE" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  4(3P14.1) WILD-TYPE"   "DEL PEAK  4(3P14.1) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "DEL PEAK  4(3P14.1) MUTATED" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
  "DEL PEAK  4(3P14.1) MUTATED"   "DEL PEAK  4(3P14.1) MUTATED" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
"DEL PEAK  4(3P14.1) WILD-TYPE" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "DEL PEAK  4(3P14.1) MUTATED"   "DEL PEAK  4(3P14.1) MUTATED" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
"DEL PEAK  4(3P14.1) WILD-TYPE"   "DEL PEAK  4(3P14.1) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
"DEL PEAK  4(3P14.1) WILD-TYPE" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  4(3P14.1) WILD-TYPE"   "DEL PEAK  4(3P14.1) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "DEL PEAK  4(3P14.1) MUTATED" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
  "DEL PEAK  4(3P14.1) MUTATED"   "DEL PEAK  4(3P14.1) MUTATED" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
"DEL PEAK  4(3P14.1) WILD-TYPE" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "DEL PEAK  4(3P14.1) MUTATED"   "DEL PEAK  4(3P14.1) MUTATED" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
"DEL PEAK  4(3P14.1) WILD-TYPE"   "DEL PEAK  4(3P14.1) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
"DEL PEAK  4(3P14.1) WILD-TYPE" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  4(3P14.1) WILD-TYPE"   "DEL PEAK  4(3P14.1) MUTATED" 
[1] "hr=" "2.2"
D26V2, continuous

Clustering(27) Variable = DEL PEAK  5(3Q13.31) MUTATION ANALYSIS
D27V1, survival
                                sevent
clus2                            0 1
  DEL PEAK  5(3Q13.31) MUTATED   4 2
  DEL PEAK  5(3Q13.31) WILD-TYPE 5 3
  DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE 
                             6                              8 
  DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE 
                             2                              3 
$`DEL PEAK  5(3Q13.31) MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A56S TCGA-ND-A4WF 
       69.63        13.71        16.34        14.40         9.70         5.49 

$`DEL PEAK  5(3Q13.31) WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-ND-A4W6 
       59.70        14.63        13.94         7.20         4.77        10.42 
TCGA-ND-A4WA TCGA-ND-A4WC 
       23.47        15.16 

  DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE 
                          5.49                           4.77 
  DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE 
                         69.63                          59.70 
  DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE 
                        14.055                         14.285 
[1] "5.5 - 69.6 (14.1)" "4.8 - 59.7 (14.3)"
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "DEL PEAK  5(3Q13.31) MUTATED" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"DEL PEAK  5(3Q13.31) WILD-TYPE"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "DEL PEAK  5(3Q13.31) MUTATED" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "DEL PEAK  5(3Q13.31) MUTATED" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"DEL PEAK  5(3Q13.31) WILD-TYPE"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK  5(3Q13.31) WILD-TYPE" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK  5(3Q13.31) WILD-TYPE"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "DEL PEAK  5(3Q13.31) MUTATED" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"DEL PEAK  5(3Q13.31) WILD-TYPE"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "DEL PEAK  5(3Q13.31) MUTATED" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "DEL PEAK  5(3Q13.31) MUTATED" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"DEL PEAK  5(3Q13.31) WILD-TYPE"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK  5(3Q13.31) WILD-TYPE" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK  5(3Q13.31) WILD-TYPE"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "DEL PEAK  5(3Q13.31) MUTATED" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"DEL PEAK  5(3Q13.31) WILD-TYPE"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "DEL PEAK  5(3Q13.31) MUTATED" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "DEL PEAK  5(3Q13.31) MUTATED" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"DEL PEAK  5(3Q13.31) WILD-TYPE"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK  5(3Q13.31) WILD-TYPE" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK  5(3Q13.31) WILD-TYPE"   "DEL PEAK  5(3Q13.31) MUTATED" 
[1] "hr=" "1"  
D27V2, continuous

Clustering(28) Variable = DEL PEAK  6(4Q22.1) MUTATION ANALYSIS
D28V1, survival
                               sevent
clus2                           0 1
  DEL PEAK  6(4Q22.1) MUTATED   5 4
  DEL PEAK  6(4Q22.1) WILD-TYPE 4 1
  DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE 
                            9                             5 
  DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE 
                            4                             1 
$`DEL PEAK  6(4Q22.1) MUTATED`
TCGA-N5-A4RV TCGA-N8-A4PL TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S 
       59.70        13.71        14.40         7.20         4.77         9.70 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF 
       10.42        23.47         5.49 

$`DEL PEAK  6(4Q22.1) WILD-TYPE`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PN TCGA-ND-A4WC 
       69.63        14.63        16.34        13.94        15.16 

  DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE 
                         4.77                         13.94 
  DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE 
                        59.70                         69.63 
  DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE 
                        10.42                         15.16 
[1] "4.8 - 59.7 (10.4)"  "13.9 - 69.6 (15.2)"
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
[1] "hr=" "4.1"
D28V2, continuous

Clustering(29) Variable = DEL PEAK  7(4Q34.3) MUTATION ANALYSIS
D29V1, survival
                               sevent
clus2                           0 1
  DEL PEAK  7(4Q34.3) MUTATED   5 4
  DEL PEAK  7(4Q34.3) WILD-TYPE 4 1
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                            9                             5 
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                            4                             1 
$`DEL PEAK  7(4Q34.3) MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PL TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S 
       69.63        13.71        14.40         7.20         4.77         9.70 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF 
       10.42        23.47         5.49 

$`DEL PEAK  7(4Q34.3) WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PN TCGA-ND-A4WC 
       59.70        14.63        16.34        13.94        15.16 

  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                         4.77                         13.94 
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                        69.63                         59.70 
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                        10.42                         15.16 
[1] "4.8 - 69.6 (10.4)"  "13.9 - 59.7 (15.2)"
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
"DEL PEAK  7(4Q34.3) WILD-TYPE" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
[1] "hr=" "4.1"
D29V2, continuous

Clustering(30) Variable = DEL PEAK  8(5Q11.2) MUTATION ANALYSIS
D30V1, survival
                               sevent
clus2                           0 1
  DEL PEAK  8(5Q11.2) MUTATED   4 3
  DEL PEAK  8(5Q11.2) WILD-TYPE 5 2
  DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE 
                            7                             7 
  DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE 
                            3                             2 
$`DEL PEAK  8(5Q11.2) MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-ND-A4WA 
       69.63        13.71        16.34        14.40         4.77        23.47 
TCGA-ND-A4WF 
        5.49 

$`DEL PEAK  8(5Q11.2) WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A56S TCGA-ND-A4W6 
       59.70        14.63        13.94         7.20         9.70        10.42 
TCGA-ND-A4WC 
       15.16 

  DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE 
                         4.77                          7.20 
  DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE 
                        69.63                         59.70 
  DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE 
                        14.40                         13.94 
[1] "4.8 - 69.6 (14.4)" "7.2 - 59.7 (13.9)"
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
[1] "hr=" "1.3"
D30V2, continuous

Clustering(31) Variable = DEL PEAK  9(6Q26) MUTATION ANALYSIS
D31V1, survival
                             sevent
clus2                         0 1
  DEL PEAK  9(6Q26) MUTATED   3 1
  DEL PEAK  9(6Q26) WILD-TYPE 6 4
  DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE 
                          4                          10 
  DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE 
                          1                           4 
$`DEL PEAK  9(6Q26) MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PL TCGA-N8-A4PP TCGA-N8-A4PQ 
       69.63        13.71         7.20         4.77 

$`DEL PEAK  9(6Q26) WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A56S 
       59.70        14.63        16.34        13.94        14.40         9.70 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
       10.42        23.47        15.16         5.49 

  DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE 
                       4.77                        5.49 
  DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE 
                      69.63                       59.70 
  DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE 
                     10.455                      14.515 
[1] "4.8 - 69.6 (10.5)" "5.5 - 59.7 (14.5)"
                 TCGA-N5-A4RT                  TCGA-N5-A4RV 
  "DEL PEAK  9(6Q26) MUTATED" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N8-A4PI                  TCGA-N8-A4PL 
"DEL PEAK  9(6Q26) WILD-TYPE"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-N8-A4PM                  TCGA-N8-A4PN 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N8-A4PO                  TCGA-N8-A4PP 
"DEL PEAK  9(6Q26) WILD-TYPE"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-N8-A4PQ                  TCGA-N8-A56S 
  "DEL PEAK  9(6Q26) MUTATED" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N5-A4RT                  TCGA-N5-A4RV 
  "DEL PEAK  9(6Q26) MUTATED" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N8-A4PI                  TCGA-N8-A4PL 
"DEL PEAK  9(6Q26) WILD-TYPE"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-N8-A4PM                  TCGA-N8-A4PN 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N8-A4PO                  TCGA-N8-A4PP 
"DEL PEAK  9(6Q26) WILD-TYPE"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-N8-A4PQ                  TCGA-N8-A56S 
  "DEL PEAK  9(6Q26) MUTATED" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N5-A4RT                  TCGA-N5-A4RV 
  "DEL PEAK  9(6Q26) MUTATED" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N8-A4PI                  TCGA-N8-A4PL 
"DEL PEAK  9(6Q26) WILD-TYPE"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-N8-A4PM                  TCGA-N8-A4PN 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N8-A4PO                  TCGA-N8-A4PP 
"DEL PEAK  9(6Q26) WILD-TYPE"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-N8-A4PQ                  TCGA-N8-A56S 
  "DEL PEAK  9(6Q26) MUTATED" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
[1] "hr=" "1.2"
D31V2, continuous

Clustering(32) Variable = DEL PEAK 10(7Q11.22) MUTATION ANALYSIS
D32V1, survival
                                sevent
clus2                            0 1
  DEL PEAK 10(7Q11.22) MUTATED   4 2
  DEL PEAK 10(7Q11.22) WILD-TYPE 5 3
  DEL PEAK 10(7Q11.22) MUTATED DEL PEAK 10(7Q11.22) WILD-TYPE 
                             6                              8 
  DEL PEAK 10(7Q11.22) MUTATED DEL PEAK 10(7Q11.22) WILD-TYPE 
                             2                              3 
$`DEL PEAK 10(7Q11.22) MUTATED`
TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WF 
       16.34        13.94         7.20         4.77        10.42         5.49 

$`DEL PEAK 10(7Q11.22) WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PO TCGA-N8-A56S 
       69.63        59.70        14.63        13.71        14.40         9.70 
TCGA-ND-A4WA TCGA-ND-A4WC 
       23.47        15.16 

  DEL PEAK 10(7Q11.22) MUTATED DEL PEAK 10(7Q11.22) WILD-TYPE 
                          4.77                           9.70 
  DEL PEAK 10(7Q11.22) MUTATED DEL PEAK 10(7Q11.22) WILD-TYPE 
                         16.34                          69.63 
  DEL PEAK 10(7Q11.22) MUTATED DEL PEAK 10(7Q11.22) WILD-TYPE 
                         8.810                         14.895 
[1] "4.8 - 16.3 (8.8)"  "9.7 - 69.6 (14.9)"
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "DEL PEAK 10(7Q11.22) MUTATED"   "DEL PEAK 10(7Q11.22) MUTATED" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
"DEL PEAK 10(7Q11.22) WILD-TYPE"   "DEL PEAK 10(7Q11.22) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "DEL PEAK 10(7Q11.22) MUTATED" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 10(7Q11.22) MUTATED" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 10(7Q11.22) WILD-TYPE"   "DEL PEAK 10(7Q11.22) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "DEL PEAK 10(7Q11.22) MUTATED"   "DEL PEAK 10(7Q11.22) MUTATED" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
"DEL PEAK 10(7Q11.22) WILD-TYPE"   "DEL PEAK 10(7Q11.22) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "DEL PEAK 10(7Q11.22) MUTATED" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 10(7Q11.22) MUTATED" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 10(7Q11.22) WILD-TYPE"   "DEL PEAK 10(7Q11.22) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "DEL PEAK 10(7Q11.22) MUTATED"   "DEL PEAK 10(7Q11.22) MUTATED" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
"DEL PEAK 10(7Q11.22) WILD-TYPE"   "DEL PEAK 10(7Q11.22) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "DEL PEAK 10(7Q11.22) MUTATED" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 10(7Q11.22) MUTATED" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 10(7Q11.22) WILD-TYPE"   "DEL PEAK 10(7Q11.22) MUTATED" 
[1] "hr=" "2.8"
D32V2, continuous

Clustering(33) Variable = DEL PEAK 11(7Q36.2) MUTATION ANALYSIS
D33V1, survival
                               sevent
clus2                           0 1
  DEL PEAK 11(7Q36.2) MUTATED   6 1
  DEL PEAK 11(7Q36.2) WILD-TYPE 3 4
  DEL PEAK 11(7Q36.2) MUTATED DEL PEAK 11(7Q36.2) WILD-TYPE 
                            7                             7 
  DEL PEAK 11(7Q36.2) MUTATED DEL PEAK 11(7Q36.2) WILD-TYPE 
                            1                             4 
$`DEL PEAK 11(7Q36.2) MUTATED`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PQ 
       69.63        59.70        16.34        13.94        14.40         4.77 
TCGA-ND-A4W6 
       10.42 

$`DEL PEAK 11(7Q36.2) WILD-TYPE`
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PP TCGA-N8-A56S TCGA-ND-A4WA TCGA-ND-A4WC 
       14.63        13.71         7.20         9.70        23.47        15.16 
TCGA-ND-A4WF 
        5.49 

  DEL PEAK 11(7Q36.2) MUTATED DEL PEAK 11(7Q36.2) WILD-TYPE 
                         4.77                          5.49 
  DEL PEAK 11(7Q36.2) MUTATED DEL PEAK 11(7Q36.2) WILD-TYPE 
                        69.63                         23.47 
  DEL PEAK 11(7Q36.2) MUTATED DEL PEAK 11(7Q36.2) WILD-TYPE 
                        14.40                         13.71 
[1] "4.8 - 69.6 (14.4)" "5.5 - 23.5 (13.7)"
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "DEL PEAK 11(7Q36.2) MUTATED"   "DEL PEAK 11(7Q36.2) MUTATED" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"DEL PEAK 11(7Q36.2) WILD-TYPE" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
  "DEL PEAK 11(7Q36.2) MUTATED"   "DEL PEAK 11(7Q36.2) MUTATED" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "DEL PEAK 11(7Q36.2) MUTATED" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
  "DEL PEAK 11(7Q36.2) MUTATED" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK 11(7Q36.2) MUTATED" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK 11(7Q36.2) WILD-TYPE" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "DEL PEAK 11(7Q36.2) MUTATED"   "DEL PEAK 11(7Q36.2) MUTATED" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"DEL PEAK 11(7Q36.2) WILD-TYPE" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
  "DEL PEAK 11(7Q36.2) MUTATED"   "DEL PEAK 11(7Q36.2) MUTATED" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "DEL PEAK 11(7Q36.2) MUTATED" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
  "DEL PEAK 11(7Q36.2) MUTATED" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK 11(7Q36.2) MUTATED" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK 11(7Q36.2) WILD-TYPE" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "DEL PEAK 11(7Q36.2) MUTATED"   "DEL PEAK 11(7Q36.2) MUTATED" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"DEL PEAK 11(7Q36.2) WILD-TYPE" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
  "DEL PEAK 11(7Q36.2) MUTATED"   "DEL PEAK 11(7Q36.2) MUTATED" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "DEL PEAK 11(7Q36.2) MUTATED" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
  "DEL PEAK 11(7Q36.2) MUTATED" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK 11(7Q36.2) MUTATED" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK 11(7Q36.2) WILD-TYPE" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
[1] "hr=" "5.2"
D33V2, continuous

Clustering(34) Variable = DEL PEAK 12(8P23.2) MUTATION ANALYSIS
D34V1, survival
                               sevent
clus2                           0 1
  DEL PEAK 12(8P23.2) MUTATED   5 3
  DEL PEAK 12(8P23.2) WILD-TYPE 4 2
  DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE 
                            8                             6 
  DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE 
                            3                             2 
$`DEL PEAK 12(8P23.2) MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-ND-A4W6 
       69.63        13.94        14.40         7.20         4.77        10.42 
TCGA-ND-A4WA TCGA-ND-A4WF 
       23.47         5.49 

$`DEL PEAK 12(8P23.2) WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A56S TCGA-ND-A4WC 
       59.70        14.63        13.71        16.34         9.70        15.16 

  DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE 
                         4.77                          9.70 
  DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE 
                        69.63                         59.70 
  DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE 
                       12.180                        14.895 
[1] "4.8 - 69.6 (12.2)" "9.7 - 59.7 (14.9)"
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"DEL PEAK 12(8P23.2) WILD-TYPE" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"DEL PEAK 12(8P23.2) WILD-TYPE" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"DEL PEAK 12(8P23.2) WILD-TYPE" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
  "DEL PEAK 12(8P23.2) MUTATED" "DEL PEAK 12(8P23.2) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK 12(8P23.2) MUTATED"   "DEL PEAK 12(8P23.2) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK 12(8P23.2) WILD-TYPE"   "DEL PEAK 12(8P23.2) MUTATED" 
[1] "hr=" "1.6"
D34V2, continuous

Clustering(35) Variable = DEL PEAK 13(9P23) MUTATION ANALYSIS
D35V1, survival
                             sevent
clus2                         0 1
  DEL PEAK 13(9P23) MUTATED   5 1
  DEL PEAK 13(9P23) WILD-TYPE 4 4
  DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE 
                          6                           8 
  DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE 
                          1                           4 
$`DEL PEAK 13(9P23) MUTATED`
TCGA-N5-A4RV TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A56S TCGA-ND-A4WA 
       59.70        16.34        13.94        14.40         9.70        23.47 

$`DEL PEAK 13(9P23) WILD-TYPE`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-ND-A4W6 
       69.63        14.63        13.71         7.20         4.77        10.42 
TCGA-ND-A4WC TCGA-ND-A4WF 
       15.16         5.49 

  DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE 
                       9.70                        4.77 
  DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE 
                      59.70                       69.63 
  DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE 
                     15.370                      12.065 
[1] "9.7 - 59.7 (15.4)" "4.8 - 69.6 (12.1)"
                 TCGA-N5-A4RT                  TCGA-N5-A4RV 
"DEL PEAK 13(9P23) WILD-TYPE"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-N8-A4PI                  TCGA-N8-A4PL 
"DEL PEAK 13(9P23) WILD-TYPE" "DEL PEAK 13(9P23) WILD-TYPE" 
                 TCGA-N8-A4PM                  TCGA-N8-A4PN 
  "DEL PEAK 13(9P23) MUTATED"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-N8-A4PO                  TCGA-N8-A4PP 
  "DEL PEAK 13(9P23) MUTATED" "DEL PEAK 13(9P23) WILD-TYPE" 
                 TCGA-N8-A4PQ                  TCGA-N8-A56S 
"DEL PEAK 13(9P23) WILD-TYPE"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
"DEL PEAK 13(9P23) WILD-TYPE"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"DEL PEAK 13(9P23) WILD-TYPE" "DEL PEAK 13(9P23) WILD-TYPE" 
                 TCGA-N5-A4RT                  TCGA-N5-A4RV 
"DEL PEAK 13(9P23) WILD-TYPE"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-N8-A4PI                  TCGA-N8-A4PL 
"DEL PEAK 13(9P23) WILD-TYPE" "DEL PEAK 13(9P23) WILD-TYPE" 
                 TCGA-N8-A4PM                  TCGA-N8-A4PN 
  "DEL PEAK 13(9P23) MUTATED"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-N8-A4PO                  TCGA-N8-A4PP 
  "DEL PEAK 13(9P23) MUTATED" "DEL PEAK 13(9P23) WILD-TYPE" 
                 TCGA-N8-A4PQ                  TCGA-N8-A56S 
"DEL PEAK 13(9P23) WILD-TYPE"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
"DEL PEAK 13(9P23) WILD-TYPE"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"DEL PEAK 13(9P23) WILD-TYPE" "DEL PEAK 13(9P23) WILD-TYPE" 
                 TCGA-N5-A4RT                  TCGA-N5-A4RV 
"DEL PEAK 13(9P23) WILD-TYPE"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-N8-A4PI                  TCGA-N8-A4PL 
"DEL PEAK 13(9P23) WILD-TYPE" "DEL PEAK 13(9P23) WILD-TYPE" 
                 TCGA-N8-A4PM                  TCGA-N8-A4PN 
  "DEL PEAK 13(9P23) MUTATED"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-N8-A4PO                  TCGA-N8-A4PP 
  "DEL PEAK 13(9P23) MUTATED" "DEL PEAK 13(9P23) WILD-TYPE" 
                 TCGA-N8-A4PQ                  TCGA-N8-A56S 
"DEL PEAK 13(9P23) WILD-TYPE"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
"DEL PEAK 13(9P23) WILD-TYPE"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"DEL PEAK 13(9P23) WILD-TYPE" "DEL PEAK 13(9P23) WILD-TYPE" 
[1] "hr=" "4.8"
D35V2, continuous

Clustering(36) Variable = DEL PEAK 14(9Q21.13) MUTATION ANALYSIS
D36V1, survival
                                sevent
clus2                            0 1
  DEL PEAK 14(9Q21.13) MUTATED   8 3
  DEL PEAK 14(9Q21.13) WILD-TYPE 1 2
  DEL PEAK 14(9Q21.13) MUTATED DEL PEAK 14(9Q21.13) WILD-TYPE 
                            11                              3 
  DEL PEAK 14(9Q21.13) MUTATED DEL PEAK 14(9Q21.13) WILD-TYPE 
                             3                              2 
$`DEL PEAK 14(9Q21.13) MUTATED`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP 
       69.63        59.70        16.34        13.94        14.40         7.20 
TCGA-N8-A4PQ TCGA-N8-A56S TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF 
        4.77         9.70        10.42        23.47         5.49 

$`DEL PEAK 14(9Q21.13) WILD-TYPE`
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-ND-A4WC 
       14.63        13.71        15.16 

  DEL PEAK 14(9Q21.13) MUTATED DEL PEAK 14(9Q21.13) WILD-TYPE 
                          4.77                          13.71 
  DEL PEAK 14(9Q21.13) MUTATED DEL PEAK 14(9Q21.13) WILD-TYPE 
                         69.63                          15.16 
  DEL PEAK 14(9Q21.13) MUTATED DEL PEAK 14(9Q21.13) WILD-TYPE 
                         13.94                          14.63 
[1] "4.8 - 69.6 (13.9)"  "13.7 - 15.2 (14.6)"
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "DEL PEAK 14(9Q21.13) MUTATED"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"DEL PEAK 14(9Q21.13) WILD-TYPE" "DEL PEAK 14(9Q21.13) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "DEL PEAK 14(9Q21.13) MUTATED"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "DEL PEAK 14(9Q21.13) MUTATED"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "DEL PEAK 14(9Q21.13) MUTATED"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 14(9Q21.13) MUTATED"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 14(9Q21.13) WILD-TYPE"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "DEL PEAK 14(9Q21.13) MUTATED"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"DEL PEAK 14(9Q21.13) WILD-TYPE" "DEL PEAK 14(9Q21.13) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "DEL PEAK 14(9Q21.13) MUTATED"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "DEL PEAK 14(9Q21.13) MUTATED"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "DEL PEAK 14(9Q21.13) MUTATED"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 14(9Q21.13) MUTATED"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 14(9Q21.13) WILD-TYPE"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "DEL PEAK 14(9Q21.13) MUTATED"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"DEL PEAK 14(9Q21.13) WILD-TYPE" "DEL PEAK 14(9Q21.13) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "DEL PEAK 14(9Q21.13) MUTATED"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "DEL PEAK 14(9Q21.13) MUTATED"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "DEL PEAK 14(9Q21.13) MUTATED"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 14(9Q21.13) MUTATED"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 14(9Q21.13) WILD-TYPE"   "DEL PEAK 14(9Q21.13) MUTATED" 
[1] "hr=" "2.4"
D36V2, continuous

Clustering(37) Variable = DEL PEAK 15(9Q33.3) MUTATION ANALYSIS
D37V1, survival
                               sevent
clus2                           0 1
  DEL PEAK 15(9Q33.3) MUTATED   7 3
  DEL PEAK 15(9Q33.3) WILD-TYPE 2 2
  DEL PEAK 15(9Q33.3) MUTATED DEL PEAK 15(9Q33.3) WILD-TYPE 
                           10                             4 
  DEL PEAK 15(9Q33.3) MUTATED DEL PEAK 15(9Q33.3) WILD-TYPE 
                            3                             2 
$`DEL PEAK 15(9Q33.3) MUTATED`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP 
       69.63        59.70        16.34        13.94        14.40         7.20 
TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF 
        4.77        10.42        23.47         5.49 

$`DEL PEAK 15(9Q33.3) WILD-TYPE`
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A56S TCGA-ND-A4WC 
       14.63        13.71         9.70        15.16 

  DEL PEAK 15(9Q33.3) MUTATED DEL PEAK 15(9Q33.3) WILD-TYPE 
                         4.77                          9.70 
  DEL PEAK 15(9Q33.3) MUTATED DEL PEAK 15(9Q33.3) WILD-TYPE 
                        69.63                         15.16 
  DEL PEAK 15(9Q33.3) MUTATED DEL PEAK 15(9Q33.3) WILD-TYPE 
                        14.17                         14.17 
[1] "4.8 - 69.6 (14.2)" "9.7 - 15.2 (14.2)"
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "DEL PEAK 15(9Q33.3) MUTATED"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"DEL PEAK 15(9Q33.3) WILD-TYPE" "DEL PEAK 15(9Q33.3) WILD-TYPE" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
  "DEL PEAK 15(9Q33.3) MUTATED"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "DEL PEAK 15(9Q33.3) MUTATED"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
  "DEL PEAK 15(9Q33.3) MUTATED" "DEL PEAK 15(9Q33.3) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK 15(9Q33.3) MUTATED"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK 15(9Q33.3) WILD-TYPE"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "DEL PEAK 15(9Q33.3) MUTATED"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"DEL PEAK 15(9Q33.3) WILD-TYPE" "DEL PEAK 15(9Q33.3) WILD-TYPE" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
  "DEL PEAK 15(9Q33.3) MUTATED"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "DEL PEAK 15(9Q33.3) MUTATED"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
  "DEL PEAK 15(9Q33.3) MUTATED" "DEL PEAK 15(9Q33.3) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK 15(9Q33.3) MUTATED"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK 15(9Q33.3) WILD-TYPE"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "DEL PEAK 15(9Q33.3) MUTATED"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
"DEL PEAK 15(9Q33.3) WILD-TYPE" "DEL PEAK 15(9Q33.3) WILD-TYPE" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
  "DEL PEAK 15(9Q33.3) MUTATED"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "DEL PEAK 15(9Q33.3) MUTATED"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
  "DEL PEAK 15(9Q33.3) MUTATED" "DEL PEAK 15(9Q33.3) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK 15(9Q33.3) MUTATED"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK 15(9Q33.3) WILD-TYPE"   "DEL PEAK 15(9Q33.3) MUTATED" 
[1] "hr=" "2.1"
D37V2, continuous

Clustering(38) Variable = DEL PEAK 16(10Q21.1) MUTATION ANALYSIS
D38V1, survival
                                sevent
clus2                            0 1
  DEL PEAK 16(10Q21.1) MUTATED   2 1
  DEL PEAK 16(10Q21.1) WILD-TYPE 7 4
  DEL PEAK 16(10Q21.1) MUTATED DEL PEAK 16(10Q21.1) WILD-TYPE 
                             3                             11 
  DEL PEAK 16(10Q21.1) MUTATED DEL PEAK 16(10Q21.1) WILD-TYPE 
                             1                              4 
$`DEL PEAK 16(10Q21.1) MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PM TCGA-ND-A4WF 
       69.63        16.34         5.49 

$`DEL PEAK 16(10Q21.1) WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP 
       59.70        14.63        13.71        13.94        14.40         7.20 
TCGA-N8-A4PQ TCGA-N8-A56S TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC 
        4.77         9.70        10.42        23.47        15.16 

  DEL PEAK 16(10Q21.1) MUTATED DEL PEAK 16(10Q21.1) WILD-TYPE 
                          5.49                           4.77 
  DEL PEAK 16(10Q21.1) MUTATED DEL PEAK 16(10Q21.1) WILD-TYPE 
                         69.63                          59.70 
  DEL PEAK 16(10Q21.1) MUTATED DEL PEAK 16(10Q21.1) WILD-TYPE 
                         16.34                          13.94 
[1] "5.5 - 69.6 (16.3)" "4.8 - 59.7 (13.9)"
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "DEL PEAK 16(10Q21.1) MUTATED" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "DEL PEAK 16(10Q21.1) MUTATED" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 16(10Q21.1) WILD-TYPE"   "DEL PEAK 16(10Q21.1) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "DEL PEAK 16(10Q21.1) MUTATED" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "DEL PEAK 16(10Q21.1) MUTATED" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 16(10Q21.1) WILD-TYPE"   "DEL PEAK 16(10Q21.1) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "DEL PEAK 16(10Q21.1) MUTATED" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "DEL PEAK 16(10Q21.1) MUTATED" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 16(10Q21.1) WILD-TYPE"   "DEL PEAK 16(10Q21.1) MUTATED" 
[1] "hr=" "1.4"
D38V2, continuous

Clustering(39) Variable = DEL PEAK 17(10Q23.31) MUTATION ANALYSIS
D39V1, survival
                                 sevent
clus2                             0 1
  DEL PEAK 17(10Q23.31) MUTATED   2 1
  DEL PEAK 17(10Q23.31) WILD-TYPE 7 4
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                              3                              11 
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                              1                               4 
$`DEL PEAK 17(10Q23.31) MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PM 
       69.63        14.63        16.34 

$`DEL PEAK 17(10Q23.31) WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ 
       59.70        13.71        13.94        14.40         7.20         4.77 
TCGA-N8-A56S TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
        9.70        10.42        23.47        15.16         5.49 

  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                          14.63                            4.77 
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                          69.63                           59.70 
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                          16.34                           13.71 
[1] "14.6 - 69.6 (16.3)" "4.8 - 59.7 (13.7)" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RV 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N8-A4PI                      TCGA-N8-A4PL 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N8-A4PM                      TCGA-N8-A4PN 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N8-A4PO                      TCGA-N8-A4PP 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N8-A4PQ                      TCGA-N8-A56S 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RV 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N8-A4PI                      TCGA-N8-A4PL 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N8-A4PM                      TCGA-N8-A4PN 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N8-A4PO                      TCGA-N8-A4PP 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N8-A4PQ                      TCGA-N8-A56S 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RV 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N8-A4PI                      TCGA-N8-A4PL 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N8-A4PM                      TCGA-N8-A4PN 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N8-A4PO                      TCGA-N8-A4PP 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N8-A4PQ                      TCGA-N8-A56S 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
[1] "hr=" "2.1"
D39V2, continuous

Clustering(40) Variable = DEL PEAK 18(11P15.5) MUTATION ANALYSIS
D40V1, survival
                                sevent
clus2                            0 1
  DEL PEAK 18(11P15.5) MUTATED   1 3
  DEL PEAK 18(11P15.5) WILD-TYPE 8 2
  DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE 
                             4                             10 
  DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE 
                             3                              2 
$`DEL PEAK 18(11P15.5) MUTATED`
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-ND-A4WA 
       14.63        13.71        16.34        23.47 

$`DEL PEAK 18(11P15.5) WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ 
       69.63        59.70        13.94        14.40         7.20         4.77 
TCGA-N8-A56S TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-ND-A4WF 
        9.70        10.42        15.16         5.49 

  DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE 
                         13.71                           4.77 
  DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE 
                         23.47                          69.63 
  DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE 
                        15.485                         12.180 
[1] "13.7 - 23.5 (15.5)" "4.8 - 69.6 (12.2)" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "DEL PEAK 18(11P15.5) MUTATED"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 18(11P15.5) WILD-TYPE"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "DEL PEAK 18(11P15.5) MUTATED"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 18(11P15.5) WILD-TYPE"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "DEL PEAK 18(11P15.5) MUTATED"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 18(11P15.5) WILD-TYPE"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
[1] "hr=" "2.3"
D40V2, continuous

Clustering(41) Variable = DEL PEAK 19(11Q14.1) MUTATION ANALYSIS
D41V1, survival
                                sevent
clus2                            0 1
  DEL PEAK 19(11Q14.1) MUTATED   3 4
  DEL PEAK 19(11Q14.1) WILD-TYPE 6 1
  DEL PEAK 19(11Q14.1) MUTATED DEL PEAK 19(11Q14.1) WILD-TYPE 
                             7                              7 
  DEL PEAK 19(11Q14.1) MUTATED DEL PEAK 19(11Q14.1) WILD-TYPE 
                             4                              1 
$`DEL PEAK 19(11Q14.1) MUTATED`
TCGA-N5-A4RV TCGA-N8-A4PL TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WA 
       59.70        13.71        14.40         4.77        10.42        23.47 
TCGA-ND-A4WF 
        5.49 

$`DEL PEAK 19(11Q14.1) WILD-TYPE`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A56S 
       69.63        14.63        16.34        13.94         7.20         9.70 
TCGA-ND-A4WC 
       15.16 

  DEL PEAK 19(11Q14.1) MUTATED DEL PEAK 19(11Q14.1) WILD-TYPE 
                          4.77                           7.20 
  DEL PEAK 19(11Q14.1) MUTATED DEL PEAK 19(11Q14.1) WILD-TYPE 
                         59.70                          69.63 
  DEL PEAK 19(11Q14.1) MUTATED DEL PEAK 19(11Q14.1) WILD-TYPE 
                         13.71                          14.63 
[1] "4.8 - 59.7 (13.7)" "7.2 - 69.6 (14.6)"
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"DEL PEAK 19(11Q14.1) WILD-TYPE"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"DEL PEAK 19(11Q14.1) WILD-TYPE"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"DEL PEAK 19(11Q14.1) WILD-TYPE" "DEL PEAK 19(11Q14.1) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "DEL PEAK 19(11Q14.1) MUTATED" "DEL PEAK 19(11Q14.1) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "DEL PEAK 19(11Q14.1) MUTATED" "DEL PEAK 19(11Q14.1) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 19(11Q14.1) MUTATED"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 19(11Q14.1) WILD-TYPE"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"DEL PEAK 19(11Q14.1) WILD-TYPE"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"DEL PEAK 19(11Q14.1) WILD-TYPE"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"DEL PEAK 19(11Q14.1) WILD-TYPE" "DEL PEAK 19(11Q14.1) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "DEL PEAK 19(11Q14.1) MUTATED" "DEL PEAK 19(11Q14.1) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "DEL PEAK 19(11Q14.1) MUTATED" "DEL PEAK 19(11Q14.1) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 19(11Q14.1) MUTATED"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 19(11Q14.1) WILD-TYPE"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"DEL PEAK 19(11Q14.1) WILD-TYPE"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"DEL PEAK 19(11Q14.1) WILD-TYPE"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"DEL PEAK 19(11Q14.1) WILD-TYPE" "DEL PEAK 19(11Q14.1) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "DEL PEAK 19(11Q14.1) MUTATED" "DEL PEAK 19(11Q14.1) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "DEL PEAK 19(11Q14.1) MUTATED" "DEL PEAK 19(11Q14.1) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 19(11Q14.1) MUTATED"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 19(11Q14.1) WILD-TYPE"   "DEL PEAK 19(11Q14.1) MUTATED" 
[1] "hr=" "4.6"
D41V2, continuous

Clustering(42) Variable = DEL PEAK 20(11Q24.2) MUTATION ANALYSIS
D42V1, survival
                                sevent
clus2                            0 1
  DEL PEAK 20(11Q24.2) MUTATED   3 4
  DEL PEAK 20(11Q24.2) WILD-TYPE 6 1
  DEL PEAK 20(11Q24.2) MUTATED DEL PEAK 20(11Q24.2) WILD-TYPE 
                             7                              7 
  DEL PEAK 20(11Q24.2) MUTATED DEL PEAK 20(11Q24.2) WILD-TYPE 
                             4                              1 
$`DEL PEAK 20(11Q24.2) MUTATED`
TCGA-N5-A4RV TCGA-N8-A4PL TCGA-N8-A4PO TCGA-N8-A4PP TCGA-ND-A4W6 TCGA-ND-A4WA 
       59.70        13.71        14.40         7.20        10.42        23.47 
TCGA-ND-A4WF 
        5.49 

$`DEL PEAK 20(11Q24.2) WILD-TYPE`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-N8-A56S 
       69.63        14.63        16.34        13.94         4.77         9.70 
TCGA-ND-A4WC 
       15.16 

  DEL PEAK 20(11Q24.2) MUTATED DEL PEAK 20(11Q24.2) WILD-TYPE 
                          5.49                           4.77 
  DEL PEAK 20(11Q24.2) MUTATED DEL PEAK 20(11Q24.2) WILD-TYPE 
                         59.70                          69.63 
  DEL PEAK 20(11Q24.2) MUTATED DEL PEAK 20(11Q24.2) WILD-TYPE 
                         13.71                          14.63 
[1] "5.5 - 59.7 (13.7)" "4.8 - 69.6 (14.6)"
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"DEL PEAK 20(11Q24.2) WILD-TYPE"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"DEL PEAK 20(11Q24.2) WILD-TYPE"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"DEL PEAK 20(11Q24.2) WILD-TYPE" "DEL PEAK 20(11Q24.2) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "DEL PEAK 20(11Q24.2) MUTATED"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"DEL PEAK 20(11Q24.2) WILD-TYPE" "DEL PEAK 20(11Q24.2) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 20(11Q24.2) MUTATED"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 20(11Q24.2) WILD-TYPE"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"DEL PEAK 20(11Q24.2) WILD-TYPE"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"DEL PEAK 20(11Q24.2) WILD-TYPE"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"DEL PEAK 20(11Q24.2) WILD-TYPE" "DEL PEAK 20(11Q24.2) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "DEL PEAK 20(11Q24.2) MUTATED"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"DEL PEAK 20(11Q24.2) WILD-TYPE" "DEL PEAK 20(11Q24.2) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 20(11Q24.2) MUTATED"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 20(11Q24.2) WILD-TYPE"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"DEL PEAK 20(11Q24.2) WILD-TYPE"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"DEL PEAK 20(11Q24.2) WILD-TYPE"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"DEL PEAK 20(11Q24.2) WILD-TYPE" "DEL PEAK 20(11Q24.2) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "DEL PEAK 20(11Q24.2) MUTATED"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"DEL PEAK 20(11Q24.2) WILD-TYPE" "DEL PEAK 20(11Q24.2) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 20(11Q24.2) MUTATED"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 20(11Q24.2) WILD-TYPE"   "DEL PEAK 20(11Q24.2) MUTATED" 
[1] "hr=" "4.3"
D42V2, continuous

Clustering(43) Variable = DEL PEAK 21(12Q23.1) MUTATION ANALYSIS
D43V1, survival
                                sevent
clus2                            0 1
  DEL PEAK 21(12Q23.1) MUTATED   2 1
  DEL PEAK 21(12Q23.1) WILD-TYPE 7 4
  DEL PEAK 21(12Q23.1) MUTATED DEL PEAK 21(12Q23.1) WILD-TYPE 
                             3                             11 
  DEL PEAK 21(12Q23.1) MUTATED DEL PEAK 21(12Q23.1) WILD-TYPE 
                             1                              4 
$`DEL PEAK 21(12Q23.1) MUTATED`
TCGA-N8-A4PI TCGA-N8-A4PO TCGA-N8-A4PP 
       14.63        14.40         7.20 

$`DEL PEAK 21(12Q23.1) WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PQ 
       69.63        59.70        13.71        16.34        13.94         4.77 
TCGA-N8-A56S TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
        9.70        10.42        23.47        15.16         5.49 

  DEL PEAK 21(12Q23.1) MUTATED DEL PEAK 21(12Q23.1) WILD-TYPE 
                          7.20                           4.77 
  DEL PEAK 21(12Q23.1) MUTATED DEL PEAK 21(12Q23.1) WILD-TYPE 
                         14.63                          69.63 
  DEL PEAK 21(12Q23.1) MUTATED DEL PEAK 21(12Q23.1) WILD-TYPE 
                         14.40                          13.94 
[1] "7.2 - 14.6 (14.4)" "4.8 - 69.6 (13.9)"
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "DEL PEAK 21(12Q23.1) MUTATED" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "DEL PEAK 21(12Q23.1) MUTATED"   "DEL PEAK 21(12Q23.1) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "DEL PEAK 21(12Q23.1) MUTATED" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "DEL PEAK 21(12Q23.1) MUTATED"   "DEL PEAK 21(12Q23.1) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "DEL PEAK 21(12Q23.1) MUTATED" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "DEL PEAK 21(12Q23.1) MUTATED"   "DEL PEAK 21(12Q23.1) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
[1] "hr=" "1.3"
D43V2, continuous

Clustering(44) Variable = DEL PEAK 22(12Q24.31) MUTATION ANALYSIS
D44V1, survival
                                 sevent
clus2                             0 1
  DEL PEAK 22(12Q24.31) MUTATED   2 2
  DEL PEAK 22(12Q24.31) WILD-TYPE 7 3
  DEL PEAK 22(12Q24.31) MUTATED DEL PEAK 22(12Q24.31) WILD-TYPE 
                              4                              10 
  DEL PEAK 22(12Q24.31) MUTATED DEL PEAK 22(12Q24.31) WILD-TYPE 
                              2                               3 
$`DEL PEAK 22(12Q24.31) MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PP 
       69.63        14.63        13.71         7.20 

$`DEL PEAK 22(12Q24.31) WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-N8-A56S 
       59.70        16.34        13.94        14.40         4.77         9.70 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
       10.42        23.47        15.16         5.49 

  DEL PEAK 22(12Q24.31) MUTATED DEL PEAK 22(12Q24.31) WILD-TYPE 
                           7.20                            4.77 
  DEL PEAK 22(12Q24.31) MUTATED DEL PEAK 22(12Q24.31) WILD-TYPE 
                          69.63                           59.70 
  DEL PEAK 22(12Q24.31) MUTATED DEL PEAK 22(12Q24.31) WILD-TYPE 
                          14.17                           14.17 
[1] "7.2 - 69.6 (14.2)" "4.8 - 59.7 (14.2)"
                     TCGA-N5-A4RT                      TCGA-N5-A4RV 
  "DEL PEAK 22(12Q24.31) MUTATED" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-N8-A4PI                      TCGA-N8-A4PL 
  "DEL PEAK 22(12Q24.31) MUTATED"   "DEL PEAK 22(12Q24.31) MUTATED" 
                     TCGA-N8-A4PM                      TCGA-N8-A4PN 
"DEL PEAK 22(12Q24.31) WILD-TYPE" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-N8-A4PO                      TCGA-N8-A4PP 
"DEL PEAK 22(12Q24.31) WILD-TYPE"   "DEL PEAK 22(12Q24.31) MUTATED" 
                     TCGA-N8-A4PQ                      TCGA-N8-A56S 
"DEL PEAK 22(12Q24.31) WILD-TYPE" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
"DEL PEAK 22(12Q24.31) WILD-TYPE" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"DEL PEAK 22(12Q24.31) WILD-TYPE" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RV 
  "DEL PEAK 22(12Q24.31) MUTATED" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-N8-A4PI                      TCGA-N8-A4PL 
  "DEL PEAK 22(12Q24.31) MUTATED"   "DEL PEAK 22(12Q24.31) MUTATED" 
                     TCGA-N8-A4PM                      TCGA-N8-A4PN 
"DEL PEAK 22(12Q24.31) WILD-TYPE" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-N8-A4PO                      TCGA-N8-A4PP 
"DEL PEAK 22(12Q24.31) WILD-TYPE"   "DEL PEAK 22(12Q24.31) MUTATED" 
                     TCGA-N8-A4PQ                      TCGA-N8-A56S 
"DEL PEAK 22(12Q24.31) WILD-TYPE" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
"DEL PEAK 22(12Q24.31) WILD-TYPE" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"DEL PEAK 22(12Q24.31) WILD-TYPE" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RV 
  "DEL PEAK 22(12Q24.31) MUTATED" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-N8-A4PI                      TCGA-N8-A4PL 
  "DEL PEAK 22(12Q24.31) MUTATED"   "DEL PEAK 22(12Q24.31) MUTATED" 
                     TCGA-N8-A4PM                      TCGA-N8-A4PN 
"DEL PEAK 22(12Q24.31) WILD-TYPE" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-N8-A4PO                      TCGA-N8-A4PP 
"DEL PEAK 22(12Q24.31) WILD-TYPE"   "DEL PEAK 22(12Q24.31) MUTATED" 
                     TCGA-N8-A4PQ                      TCGA-N8-A56S 
"DEL PEAK 22(12Q24.31) WILD-TYPE" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
"DEL PEAK 22(12Q24.31) WILD-TYPE" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"DEL PEAK 22(12Q24.31) WILD-TYPE" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
[1] "hr=" "1.4"
D44V2, continuous

Clustering(45) Variable = DEL PEAK 23(13Q12.11) MUTATION ANALYSIS
D45V1, survival
                                 sevent
clus2                             0 1
  DEL PEAK 23(13Q12.11) MUTATED   5 2
  DEL PEAK 23(13Q12.11) WILD-TYPE 4 3
  DEL PEAK 23(13Q12.11) MUTATED DEL PEAK 23(13Q12.11) WILD-TYPE 
                              7                               7 
  DEL PEAK 23(13Q12.11) MUTATED DEL PEAK 23(13Q12.11) WILD-TYPE 
                              2                               3 
$`DEL PEAK 23(13Q12.11) MUTATED`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S 
       69.63        59.70        14.63        14.40         7.20         9.70 
TCGA-ND-A4WF 
        5.49 

$`DEL PEAK 23(13Q12.11) WILD-TYPE`
TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WA 
       13.71        16.34        13.94         4.77        10.42        23.47 
TCGA-ND-A4WC 
       15.16 

  DEL PEAK 23(13Q12.11) MUTATED DEL PEAK 23(13Q12.11) WILD-TYPE 
                           5.49                            4.77 
  DEL PEAK 23(13Q12.11) MUTATED DEL PEAK 23(13Q12.11) WILD-TYPE 
                          69.63                           23.47 
  DEL PEAK 23(13Q12.11) MUTATED DEL PEAK 23(13Q12.11) WILD-TYPE 
                          14.40                           13.94 
[1] "5.5 - 69.6 (14.4)" "4.8 - 23.5 (13.9)"
                     TCGA-N5-A4RT                      TCGA-N5-A4RV 
  "DEL PEAK 23(13Q12.11) MUTATED"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-N8-A4PI                      TCGA-N8-A4PL 
  "DEL PEAK 23(13Q12.11) MUTATED" "DEL PEAK 23(13Q12.11) WILD-TYPE" 
                     TCGA-N8-A4PM                      TCGA-N8-A4PN 
"DEL PEAK 23(13Q12.11) WILD-TYPE" "DEL PEAK 23(13Q12.11) WILD-TYPE" 
                     TCGA-N8-A4PO                      TCGA-N8-A4PP 
  "DEL PEAK 23(13Q12.11) MUTATED"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-N8-A4PQ                      TCGA-N8-A56S 
"DEL PEAK 23(13Q12.11) WILD-TYPE"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
"DEL PEAK 23(13Q12.11) WILD-TYPE" "DEL PEAK 23(13Q12.11) WILD-TYPE" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"DEL PEAK 23(13Q12.11) WILD-TYPE"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RV 
  "DEL PEAK 23(13Q12.11) MUTATED"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-N8-A4PI                      TCGA-N8-A4PL 
  "DEL PEAK 23(13Q12.11) MUTATED" "DEL PEAK 23(13Q12.11) WILD-TYPE" 
                     TCGA-N8-A4PM                      TCGA-N8-A4PN 
"DEL PEAK 23(13Q12.11) WILD-TYPE" "DEL PEAK 23(13Q12.11) WILD-TYPE" 
                     TCGA-N8-A4PO                      TCGA-N8-A4PP 
  "DEL PEAK 23(13Q12.11) MUTATED"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-N8-A4PQ                      TCGA-N8-A56S 
"DEL PEAK 23(13Q12.11) WILD-TYPE"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
"DEL PEAK 23(13Q12.11) WILD-TYPE" "DEL PEAK 23(13Q12.11) WILD-TYPE" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"DEL PEAK 23(13Q12.11) WILD-TYPE"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RV 
  "DEL PEAK 23(13Q12.11) MUTATED"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-N8-A4PI                      TCGA-N8-A4PL 
  "DEL PEAK 23(13Q12.11) MUTATED" "DEL PEAK 23(13Q12.11) WILD-TYPE" 
                     TCGA-N8-A4PM                      TCGA-N8-A4PN 
"DEL PEAK 23(13Q12.11) WILD-TYPE" "DEL PEAK 23(13Q12.11) WILD-TYPE" 
                     TCGA-N8-A4PO                      TCGA-N8-A4PP 
  "DEL PEAK 23(13Q12.11) MUTATED"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-N8-A4PQ                      TCGA-N8-A56S 
"DEL PEAK 23(13Q12.11) WILD-TYPE"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
"DEL PEAK 23(13Q12.11) WILD-TYPE" "DEL PEAK 23(13Q12.11) WILD-TYPE" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"DEL PEAK 23(13Q12.11) WILD-TYPE"   "DEL PEAK 23(13Q12.11) MUTATED" 
[1] "hr=" "1.6"
D45V2, continuous

Clustering(46) Variable = DEL PEAK 24(13Q14.2) MUTATION ANALYSIS
D46V1, survival
                                sevent
clus2                            0 1
  DEL PEAK 24(13Q14.2) MUTATED   5 2
  DEL PEAK 24(13Q14.2) WILD-TYPE 4 3
  DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE 
                             7                              7 
  DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE 
                             2                              3 
$`DEL PEAK 24(13Q14.2) MUTATED`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S 
       69.63        59.70        14.63        14.40         7.20         9.70 
TCGA-ND-A4WF 
        5.49 

$`DEL PEAK 24(13Q14.2) WILD-TYPE`
TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WA 
       13.71        16.34        13.94         4.77        10.42        23.47 
TCGA-ND-A4WC 
       15.16 

  DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE 
                          5.49                           4.77 
  DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE 
                         69.63                          23.47 
  DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE 
                         14.40                          13.94 
[1] "5.5 - 69.6 (14.4)" "4.8 - 23.5 (13.9)"
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
[1] "hr=" "1.6"
D46V2, continuous

Clustering(47) Variable = DEL PEAK 25(14Q21.1) MUTATION ANALYSIS
D47V1, survival
                                sevent
clus2                            0 1
  DEL PEAK 25(14Q21.1) MUTATED   5 4
  DEL PEAK 25(14Q21.1) WILD-TYPE 4 1
  DEL PEAK 25(14Q21.1) MUTATED DEL PEAK 25(14Q21.1) WILD-TYPE 
                             9                              5 
  DEL PEAK 25(14Q21.1) MUTATED DEL PEAK 25(14Q21.1) WILD-TYPE 
                             4                              1 
$`DEL PEAK 25(14Q21.1) MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ 
       69.63        14.63        13.71        14.40         7.20         4.77 
TCGA-N8-A56S TCGA-ND-A4W6 TCGA-ND-A4WA 
        9.70        10.42        23.47 

$`DEL PEAK 25(14Q21.1) WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A4PM TCGA-N8-A4PN TCGA-ND-A4WC TCGA-ND-A4WF 
       59.70        16.34        13.94        15.16         5.49 

  DEL PEAK 25(14Q21.1) MUTATED DEL PEAK 25(14Q21.1) WILD-TYPE 
                          4.77                           5.49 
  DEL PEAK 25(14Q21.1) MUTATED DEL PEAK 25(14Q21.1) WILD-TYPE 
                         69.63                          59.70 
  DEL PEAK 25(14Q21.1) MUTATED DEL PEAK 25(14Q21.1) WILD-TYPE 
                         13.71                          15.16 
[1] "4.8 - 69.6 (13.7)" "5.5 - 59.7 (15.2)"
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "DEL PEAK 25(14Q21.1) MUTATED" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "DEL PEAK 25(14Q21.1) MUTATED"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"DEL PEAK 25(14Q21.1) WILD-TYPE" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "DEL PEAK 25(14Q21.1) MUTATED"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "DEL PEAK 25(14Q21.1) MUTATED"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 25(14Q21.1) MUTATED"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 25(14Q21.1) WILD-TYPE" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "DEL PEAK 25(14Q21.1) MUTATED" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "DEL PEAK 25(14Q21.1) MUTATED"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"DEL PEAK 25(14Q21.1) WILD-TYPE" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "DEL PEAK 25(14Q21.1) MUTATED"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "DEL PEAK 25(14Q21.1) MUTATED"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 25(14Q21.1) MUTATED"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 25(14Q21.1) WILD-TYPE" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "DEL PEAK 25(14Q21.1) MUTATED" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "DEL PEAK 25(14Q21.1) MUTATED"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"DEL PEAK 25(14Q21.1) WILD-TYPE" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "DEL PEAK 25(14Q21.1) MUTATED"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "DEL PEAK 25(14Q21.1) MUTATED"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 25(14Q21.1) MUTATED"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 25(14Q21.1) WILD-TYPE" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
[1] "hr=" "2.8"
D47V2, continuous

Clustering(48) Variable = DEL PEAK 26(15Q14) MUTATION ANALYSIS
D48V1, survival
                              sevent
clus2                          0 1
  DEL PEAK 26(15Q14) MUTATED   7 4
  DEL PEAK 26(15Q14) WILD-TYPE 2 1
  DEL PEAK 26(15Q14) MUTATED DEL PEAK 26(15Q14) WILD-TYPE 
                          11                            3 
  DEL PEAK 26(15Q14) MUTATED DEL PEAK 26(15Q14) WILD-TYPE 
                           4                            1 
$`DEL PEAK 26(15Q14) MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO 
       69.63        14.63        13.71        16.34        13.94        14.40 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-ND-A4WA TCGA-ND-A4WF 
        7.20         4.77         9.70        23.47         5.49 

$`DEL PEAK 26(15Q14) WILD-TYPE`
TCGA-N5-A4RV TCGA-ND-A4W6 TCGA-ND-A4WC 
       59.70        10.42        15.16 

  DEL PEAK 26(15Q14) MUTATED DEL PEAK 26(15Q14) WILD-TYPE 
                        4.77                        10.42 
  DEL PEAK 26(15Q14) MUTATED DEL PEAK 26(15Q14) WILD-TYPE 
                       69.63                        59.70 
  DEL PEAK 26(15Q14) MUTATED DEL PEAK 26(15Q14) WILD-TYPE 
                       13.94                        15.16 
[1] "4.8 - 69.6 (13.9)"  "10.4 - 59.7 (15.2)"
                  TCGA-N5-A4RT                   TCGA-N5-A4RV 
  "DEL PEAK 26(15Q14) MUTATED" "DEL PEAK 26(15Q14) WILD-TYPE" 
                  TCGA-N8-A4PI                   TCGA-N8-A4PL 
  "DEL PEAK 26(15Q14) MUTATED"   "DEL PEAK 26(15Q14) MUTATED" 
                  TCGA-N8-A4PM                   TCGA-N8-A4PN 
  "DEL PEAK 26(15Q14) MUTATED"   "DEL PEAK 26(15Q14) MUTATED" 
                  TCGA-N8-A4PO                   TCGA-N8-A4PP 
  "DEL PEAK 26(15Q14) MUTATED"   "DEL PEAK 26(15Q14) MUTATED" 
                  TCGA-N8-A4PQ                   TCGA-N8-A56S 
  "DEL PEAK 26(15Q14) MUTATED"   "DEL PEAK 26(15Q14) MUTATED" 
                  TCGA-ND-A4W6                   TCGA-ND-A4WA 
"DEL PEAK 26(15Q14) WILD-TYPE"   "DEL PEAK 26(15Q14) MUTATED" 
                  TCGA-ND-A4WC                   TCGA-ND-A4WF 
"DEL PEAK 26(15Q14) WILD-TYPE"   "DEL PEAK 26(15Q14) MUTATED" 
                  TCGA-N5-A4RT                   TCGA-N5-A4RV 
  "DEL PEAK 26(15Q14) MUTATED" "DEL PEAK 26(15Q14) WILD-TYPE" 
                  TCGA-N8-A4PI                   TCGA-N8-A4PL 
  "DEL PEAK 26(15Q14) MUTATED"   "DEL PEAK 26(15Q14) MUTATED" 
                  TCGA-N8-A4PM                   TCGA-N8-A4PN 
  "DEL PEAK 26(15Q14) MUTATED"   "DEL PEAK 26(15Q14) MUTATED" 
                  TCGA-N8-A4PO                   TCGA-N8-A4PP 
  "DEL PEAK 26(15Q14) MUTATED"   "DEL PEAK 26(15Q14) MUTATED" 
                  TCGA-N8-A4PQ                   TCGA-N8-A56S 
  "DEL PEAK 26(15Q14) MUTATED"   "DEL PEAK 26(15Q14) MUTATED" 
                  TCGA-ND-A4W6                   TCGA-ND-A4WA 
"DEL PEAK 26(15Q14) WILD-TYPE"   "DEL PEAK 26(15Q14) MUTATED" 
                  TCGA-ND-A4WC                   TCGA-ND-A4WF 
"DEL PEAK 26(15Q14) WILD-TYPE"   "DEL PEAK 26(15Q14) MUTATED" 
                  TCGA-N5-A4RT                   TCGA-N5-A4RV 
  "DEL PEAK 26(15Q14) MUTATED" "DEL PEAK 26(15Q14) WILD-TYPE" 
                  TCGA-N8-A4PI                   TCGA-N8-A4PL 
  "DEL PEAK 26(15Q14) MUTATED"   "DEL PEAK 26(15Q14) MUTATED" 
                  TCGA-N8-A4PM                   TCGA-N8-A4PN 
  "DEL PEAK 26(15Q14) MUTATED"   "DEL PEAK 26(15Q14) MUTATED" 
                  TCGA-N8-A4PO                   TCGA-N8-A4PP 
  "DEL PEAK 26(15Q14) MUTATED"   "DEL PEAK 26(15Q14) MUTATED" 
                  TCGA-N8-A4PQ                   TCGA-N8-A56S 
  "DEL PEAK 26(15Q14) MUTATED"   "DEL PEAK 26(15Q14) MUTATED" 
                  TCGA-ND-A4W6                   TCGA-ND-A4WA 
"DEL PEAK 26(15Q14) WILD-TYPE"   "DEL PEAK 26(15Q14) MUTATED" 
                  TCGA-ND-A4WC                   TCGA-ND-A4WF 
"DEL PEAK 26(15Q14) WILD-TYPE"   "DEL PEAK 26(15Q14) MUTATED" 
[1] "hr=" "1.6"
D48V2, continuous

Clustering(49) Variable = DEL PEAK 27(16Q23.1) MUTATION ANALYSIS
D49V1, survival
                                sevent
clus2                            0 1
  DEL PEAK 27(16Q23.1) MUTATED   6 4
  DEL PEAK 27(16Q23.1) WILD-TYPE 3 1
  DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE 
                            10                              4 
  DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE 
                             4                              1 
$`DEL PEAK 27(16Q23.1) MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO 
       69.63        14.63        13.71        16.34        13.94        14.40 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WF 
        7.20         4.77        10.42         5.49 

$`DEL PEAK 27(16Q23.1) WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A56S TCGA-ND-A4WA TCGA-ND-A4WC 
       59.70         9.70        23.47        15.16 

  DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE 
                          4.77                           9.70 
  DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE 
                         69.63                          59.70 
  DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE 
                        13.825                         19.315 
[1] "4.8 - 69.6 (13.8)" "9.7 - 59.7 (19.3)"
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "DEL PEAK 27(16Q23.1) MUTATED" "DEL PEAK 27(16Q23.1) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "DEL PEAK 27(16Q23.1) MUTATED"   "DEL PEAK 27(16Q23.1) MUTATED" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "DEL PEAK 27(16Q23.1) MUTATED"   "DEL PEAK 27(16Q23.1) MUTATED" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "DEL PEAK 27(16Q23.1) MUTATED"   "DEL PEAK 27(16Q23.1) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "DEL PEAK 27(16Q23.1) MUTATED" "DEL PEAK 27(16Q23.1) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 27(16Q23.1) MUTATED" "DEL PEAK 27(16Q23.1) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 27(16Q23.1) WILD-TYPE"   "DEL PEAK 27(16Q23.1) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "DEL PEAK 27(16Q23.1) MUTATED" "DEL PEAK 27(16Q23.1) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "DEL PEAK 27(16Q23.1) MUTATED"   "DEL PEAK 27(16Q23.1) MUTATED" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "DEL PEAK 27(16Q23.1) MUTATED"   "DEL PEAK 27(16Q23.1) MUTATED" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "DEL PEAK 27(16Q23.1) MUTATED"   "DEL PEAK 27(16Q23.1) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "DEL PEAK 27(16Q23.1) MUTATED" "DEL PEAK 27(16Q23.1) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 27(16Q23.1) MUTATED" "DEL PEAK 27(16Q23.1) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 27(16Q23.1) WILD-TYPE"   "DEL PEAK 27(16Q23.1) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "DEL PEAK 27(16Q23.1) MUTATED" "DEL PEAK 27(16Q23.1) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
  "DEL PEAK 27(16Q23.1) MUTATED"   "DEL PEAK 27(16Q23.1) MUTATED" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "DEL PEAK 27(16Q23.1) MUTATED"   "DEL PEAK 27(16Q23.1) MUTATED" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "DEL PEAK 27(16Q23.1) MUTATED"   "DEL PEAK 27(16Q23.1) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
  "DEL PEAK 27(16Q23.1) MUTATED" "DEL PEAK 27(16Q23.1) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 27(16Q23.1) MUTATED" "DEL PEAK 27(16Q23.1) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 27(16Q23.1) WILD-TYPE"   "DEL PEAK 27(16Q23.1) MUTATED" 
[1] "hr=" "3.2"
D49V2, continuous

Clustering(50) Variable = DEL PEAK 28(17P13.1) MUTATION ANALYSIS
D50V1, survival
                                sevent
clus2                            0 1
  DEL PEAK 28(17P13.1) MUTATED   7 3
  DEL PEAK 28(17P13.1) WILD-TYPE 2 2
  DEL PEAK 28(17P13.1) MUTATED DEL PEAK 28(17P13.1) WILD-TYPE 
                            10                              4 
  DEL PEAK 28(17P13.1) MUTATED DEL PEAK 28(17P13.1) WILD-TYPE 
                             3                              2 
$`DEL PEAK 28(17P13.1) MUTATED`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP 
       69.63        59.70        16.34        13.94        14.40         7.20 
TCGA-N8-A56S TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF 
        9.70        10.42        23.47         5.49 

$`DEL PEAK 28(17P13.1) WILD-TYPE`
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PQ TCGA-ND-A4WC 
       14.63        13.71         4.77        15.16 

  DEL PEAK 28(17P13.1) MUTATED DEL PEAK 28(17P13.1) WILD-TYPE 
                          5.49                           4.77 
  DEL PEAK 28(17P13.1) MUTATED DEL PEAK 28(17P13.1) WILD-TYPE 
                         69.63                          15.16 
  DEL PEAK 28(17P13.1) MUTATED DEL PEAK 28(17P13.1) WILD-TYPE 
                         14.17                          14.17 
[1] "5.5 - 69.6 (14.2)" "4.8 - 15.2 (14.2)"
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "DEL PEAK 28(17P13.1) MUTATED"   "DEL PEAK 28(17P13.1) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"DEL PEAK 28(17P13.1) WILD-TYPE" "DEL PEAK 28(17P13.1) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "DEL PEAK 28(17P13.1) MUTATED"   "DEL PEAK 28(17P13.1) MUTATED" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "DEL PEAK 28(17P13.1) MUTATED"   "DEL PEAK 28(17P13.1) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"DEL PEAK 28(17P13.1) WILD-TYPE"   "DEL PEAK 28(17P13.1) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 28(17P13.1) MUTATED"   "DEL PEAK 28(17P13.1) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 28(17P13.1) WILD-TYPE"   "DEL PEAK 28(17P13.1) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "DEL PEAK 28(17P13.1) MUTATED"   "DEL PEAK 28(17P13.1) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"DEL PEAK 28(17P13.1) WILD-TYPE" "DEL PEAK 28(17P13.1) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "DEL PEAK 28(17P13.1) MUTATED"   "DEL PEAK 28(17P13.1) MUTATED" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "DEL PEAK 28(17P13.1) MUTATED"   "DEL PEAK 28(17P13.1) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"DEL PEAK 28(17P13.1) WILD-TYPE"   "DEL PEAK 28(17P13.1) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 28(17P13.1) MUTATED"   "DEL PEAK 28(17P13.1) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 28(17P13.1) WILD-TYPE"   "DEL PEAK 28(17P13.1) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
  "DEL PEAK 28(17P13.1) MUTATED"   "DEL PEAK 28(17P13.1) MUTATED" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"DEL PEAK 28(17P13.1) WILD-TYPE" "DEL PEAK 28(17P13.1) WILD-TYPE" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
  "DEL PEAK 28(17P13.1) MUTATED"   "DEL PEAK 28(17P13.1) MUTATED" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
  "DEL PEAK 28(17P13.1) MUTATED"   "DEL PEAK 28(17P13.1) MUTATED" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"DEL PEAK 28(17P13.1) WILD-TYPE"   "DEL PEAK 28(17P13.1) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 28(17P13.1) MUTATED"   "DEL PEAK 28(17P13.1) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 28(17P13.1) WILD-TYPE"   "DEL PEAK 28(17P13.1) MUTATED" 
[1] "hr=" "2.4"
D50V2, continuous

Clustering(51) Variable = DEL PEAK 29(17Q21.32) MUTATION ANALYSIS
D51V1, survival
                                 sevent
clus2                             0 1
  DEL PEAK 29(17Q21.32) MUTATED   2 2
  DEL PEAK 29(17Q21.32) WILD-TYPE 7 3
  DEL PEAK 29(17Q21.32) MUTATED DEL PEAK 29(17Q21.32) WILD-TYPE 
                              4                              10 
  DEL PEAK 29(17Q21.32) MUTATED DEL PEAK 29(17Q21.32) WILD-TYPE 
                              2                               3 
$`DEL PEAK 29(17Q21.32) MUTATED`
TCGA-N8-A4PM TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WF 
       16.34         4.77        10.42         5.49 

$`DEL PEAK 29(17Q21.32) WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PO 
       69.63        59.70        14.63        13.71        13.94        14.40 
TCGA-N8-A4PP TCGA-N8-A56S TCGA-ND-A4WA TCGA-ND-A4WC 
        7.20         9.70        23.47        15.16 

  DEL PEAK 29(17Q21.32) MUTATED DEL PEAK 29(17Q21.32) WILD-TYPE 
                           4.77                            7.20 
  DEL PEAK 29(17Q21.32) MUTATED DEL PEAK 29(17Q21.32) WILD-TYPE 
                          16.34                           69.63 
  DEL PEAK 29(17Q21.32) MUTATED DEL PEAK 29(17Q21.32) WILD-TYPE 
                          7.955                          14.515 
[1] "4.8 - 16.3 (8.0)"  "7.2 - 69.6 (14.5)"
                     TCGA-N5-A4RT                      TCGA-N5-A4RV 
"DEL PEAK 29(17Q21.32) WILD-TYPE" "DEL PEAK 29(17Q21.32) WILD-TYPE" 
                     TCGA-N8-A4PI                      TCGA-N8-A4PL 
"DEL PEAK 29(17Q21.32) WILD-TYPE" "DEL PEAK 29(17Q21.32) WILD-TYPE" 
                     TCGA-N8-A4PM                      TCGA-N8-A4PN 
  "DEL PEAK 29(17Q21.32) MUTATED" "DEL PEAK 29(17Q21.32) WILD-TYPE" 
                     TCGA-N8-A4PO                      TCGA-N8-A4PP 
"DEL PEAK 29(17Q21.32) WILD-TYPE" "DEL PEAK 29(17Q21.32) WILD-TYPE" 
                     TCGA-N8-A4PQ                      TCGA-N8-A56S 
  "DEL PEAK 29(17Q21.32) MUTATED" "DEL PEAK 29(17Q21.32) WILD-TYPE" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
  "DEL PEAK 29(17Q21.32) MUTATED" "DEL PEAK 29(17Q21.32) WILD-TYPE" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"DEL PEAK 29(17Q21.32) WILD-TYPE"   "DEL PEAK 29(17Q21.32) MUTATED" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RV 
"DEL PEAK 29(17Q21.32) WILD-TYPE" "DEL PEAK 29(17Q21.32) WILD-TYPE" 
                     TCGA-N8-A4PI                      TCGA-N8-A4PL 
"DEL PEAK 29(17Q21.32) WILD-TYPE" "DEL PEAK 29(17Q21.32) WILD-TYPE" 
                     TCGA-N8-A4PM                      TCGA-N8-A4PN 
  "DEL PEAK 29(17Q21.32) MUTATED" "DEL PEAK 29(17Q21.32) WILD-TYPE" 
                     TCGA-N8-A4PO                      TCGA-N8-A4PP 
"DEL PEAK 29(17Q21.32) WILD-TYPE" "DEL PEAK 29(17Q21.32) WILD-TYPE" 
                     TCGA-N8-A4PQ                      TCGA-N8-A56S 
  "DEL PEAK 29(17Q21.32) MUTATED" "DEL PEAK 29(17Q21.32) WILD-TYPE" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
  "DEL PEAK 29(17Q21.32) MUTATED" "DEL PEAK 29(17Q21.32) WILD-TYPE" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"DEL PEAK 29(17Q21.32) WILD-TYPE"   "DEL PEAK 29(17Q21.32) MUTATED" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RV 
"DEL PEAK 29(17Q21.32) WILD-TYPE" "DEL PEAK 29(17Q21.32) WILD-TYPE" 
                     TCGA-N8-A4PI                      TCGA-N8-A4PL 
"DEL PEAK 29(17Q21.32) WILD-TYPE" "DEL PEAK 29(17Q21.32) WILD-TYPE" 
                     TCGA-N8-A4PM                      TCGA-N8-A4PN 
  "DEL PEAK 29(17Q21.32) MUTATED" "DEL PEAK 29(17Q21.32) WILD-TYPE" 
                     TCGA-N8-A4PO                      TCGA-N8-A4PP 
"DEL PEAK 29(17Q21.32) WILD-TYPE" "DEL PEAK 29(17Q21.32) WILD-TYPE" 
                     TCGA-N8-A4PQ                      TCGA-N8-A56S 
  "DEL PEAK 29(17Q21.32) MUTATED" "DEL PEAK 29(17Q21.32) WILD-TYPE" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
  "DEL PEAK 29(17Q21.32) MUTATED" "DEL PEAK 29(17Q21.32) WILD-TYPE" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"DEL PEAK 29(17Q21.32) WILD-TYPE"   "DEL PEAK 29(17Q21.32) MUTATED" 
[1] "hr=" "4.8"
D51V2, continuous

Clustering(52) Variable = DEL PEAK 30(18Q22.2) MUTATION ANALYSIS
D52V1, survival
                                sevent
clus2                            0 1
  DEL PEAK 30(18Q22.2) MUTATED   2 3
  DEL PEAK 30(18Q22.2) WILD-TYPE 7 2
  DEL PEAK 30(18Q22.2) MUTATED DEL PEAK 30(18Q22.2) WILD-TYPE 
                             5                              9 
  DEL PEAK 30(18Q22.2) MUTATED DEL PEAK 30(18Q22.2) WILD-TYPE 
                             3                              2 
$`DEL PEAK 30(18Q22.2) MUTATED`
TCGA-N8-A4PL TCGA-N8-A4PN TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC 
       13.71        13.94        10.42        23.47        15.16 

$`DEL PEAK 30(18Q22.2) WILD-TYPE`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP 
       69.63        59.70        14.63        16.34        14.40         7.20 
TCGA-N8-A4PQ TCGA-N8-A56S TCGA-ND-A4WF 
        4.77         9.70         5.49 

  DEL PEAK 30(18Q22.2) MUTATED DEL PEAK 30(18Q22.2) WILD-TYPE 
                         10.42                           4.77 
  DEL PEAK 30(18Q22.2) MUTATED DEL PEAK 30(18Q22.2) WILD-TYPE 
                         23.47                          69.63 
  DEL PEAK 30(18Q22.2) MUTATED DEL PEAK 30(18Q22.2) WILD-TYPE 
                         13.94                          14.40 
[1] "10.4 - 23.5 (13.9)" "4.8 - 69.6 (14.4)" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"DEL PEAK 30(18Q22.2) WILD-TYPE" "DEL PEAK 30(18Q22.2) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"DEL PEAK 30(18Q22.2) WILD-TYPE"   "DEL PEAK 30(18Q22.2) MUTATED" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"DEL PEAK 30(18Q22.2) WILD-TYPE"   "DEL PEAK 30(18Q22.2) MUTATED" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
"DEL PEAK 30(18Q22.2) WILD-TYPE" "DEL PEAK 30(18Q22.2) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"DEL PEAK 30(18Q22.2) WILD-TYPE" "DEL PEAK 30(18Q22.2) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 30(18Q22.2) MUTATED"   "DEL PEAK 30(18Q22.2) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
  "DEL PEAK 30(18Q22.2) MUTATED" "DEL PEAK 30(18Q22.2) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"DEL PEAK 30(18Q22.2) WILD-TYPE" "DEL PEAK 30(18Q22.2) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"DEL PEAK 30(18Q22.2) WILD-TYPE"   "DEL PEAK 30(18Q22.2) MUTATED" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"DEL PEAK 30(18Q22.2) WILD-TYPE"   "DEL PEAK 30(18Q22.2) MUTATED" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
"DEL PEAK 30(18Q22.2) WILD-TYPE" "DEL PEAK 30(18Q22.2) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"DEL PEAK 30(18Q22.2) WILD-TYPE" "DEL PEAK 30(18Q22.2) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 30(18Q22.2) MUTATED"   "DEL PEAK 30(18Q22.2) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
  "DEL PEAK 30(18Q22.2) MUTATED" "DEL PEAK 30(18Q22.2) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RV 
"DEL PEAK 30(18Q22.2) WILD-TYPE" "DEL PEAK 30(18Q22.2) WILD-TYPE" 
                    TCGA-N8-A4PI                     TCGA-N8-A4PL 
"DEL PEAK 30(18Q22.2) WILD-TYPE"   "DEL PEAK 30(18Q22.2) MUTATED" 
                    TCGA-N8-A4PM                     TCGA-N8-A4PN 
"DEL PEAK 30(18Q22.2) WILD-TYPE"   "DEL PEAK 30(18Q22.2) MUTATED" 
                    TCGA-N8-A4PO                     TCGA-N8-A4PP 
"DEL PEAK 30(18Q22.2) WILD-TYPE" "DEL PEAK 30(18Q22.2) WILD-TYPE" 
                    TCGA-N8-A4PQ                     TCGA-N8-A56S 
"DEL PEAK 30(18Q22.2) WILD-TYPE" "DEL PEAK 30(18Q22.2) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 30(18Q22.2) MUTATED"   "DEL PEAK 30(18Q22.2) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
  "DEL PEAK 30(18Q22.2) MUTATED" "DEL PEAK 30(18Q22.2) WILD-TYPE" 
[1] "hr=" "2.3"
D52V2, continuous

Clustering(53) Variable = DEL PEAK 32(19Q13.33) MUTATION ANALYSIS
D53V1, survival
                                 sevent
clus2                             0 1
  DEL PEAK 32(19Q13.33) MUTATED   5 1
  DEL PEAK 32(19Q13.33) WILD-TYPE 4 4
  DEL PEAK 32(19Q13.33) MUTATED DEL PEAK 32(19Q13.33) WILD-TYPE 
                              6                               8 
  DEL PEAK 32(19Q13.33) MUTATED DEL PEAK 32(19Q13.33) WILD-TYPE 
                              1                               4 
$`DEL PEAK 32(19Q13.33) MUTATED`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A56S TCGA-ND-A4WF 
       69.63        59.70        13.94         7.20         9.70         5.49 

$`DEL PEAK 32(19Q13.33) WILD-TYPE`
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-ND-A4W6 
       14.63        13.71        16.34        14.40         4.77        10.42 
TCGA-ND-A4WA TCGA-ND-A4WC 
       23.47        15.16 

  DEL PEAK 32(19Q13.33) MUTATED DEL PEAK 32(19Q13.33) WILD-TYPE 
                           5.49                            4.77 
  DEL PEAK 32(19Q13.33) MUTATED DEL PEAK 32(19Q13.33) WILD-TYPE 
                          69.63                           23.47 
  DEL PEAK 32(19Q13.33) MUTATED DEL PEAK 32(19Q13.33) WILD-TYPE 
                         11.820                          14.515 
[1] "5.5 - 69.6 (11.8)" "4.8 - 23.5 (14.5)"
                     TCGA-N5-A4RT                      TCGA-N5-A4RV 
  "DEL PEAK 32(19Q13.33) MUTATED"   "DEL PEAK 32(19Q13.33) MUTATED" 
                     TCGA-N8-A4PI                      TCGA-N8-A4PL 
"DEL PEAK 32(19Q13.33) WILD-TYPE" "DEL PEAK 32(19Q13.33) WILD-TYPE" 
                     TCGA-N8-A4PM                      TCGA-N8-A4PN 
"DEL PEAK 32(19Q13.33) WILD-TYPE"   "DEL PEAK 32(19Q13.33) MUTATED" 
                     TCGA-N8-A4PO                      TCGA-N8-A4PP 
"DEL PEAK 32(19Q13.33) WILD-TYPE"   "DEL PEAK 32(19Q13.33) MUTATED" 
                     TCGA-N8-A4PQ                      TCGA-N8-A56S 
"DEL PEAK 32(19Q13.33) WILD-TYPE"   "DEL PEAK 32(19Q13.33) MUTATED" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
"DEL PEAK 32(19Q13.33) WILD-TYPE" "DEL PEAK 32(19Q13.33) WILD-TYPE" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"DEL PEAK 32(19Q13.33) WILD-TYPE"   "DEL PEAK 32(19Q13.33) MUTATED" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RV 
  "DEL PEAK 32(19Q13.33) MUTATED"   "DEL PEAK 32(19Q13.33) MUTATED" 
                     TCGA-N8-A4PI                      TCGA-N8-A4PL 
"DEL PEAK 32(19Q13.33) WILD-TYPE" "DEL PEAK 32(19Q13.33) WILD-TYPE" 
                     TCGA-N8-A4PM                      TCGA-N8-A4PN 
"DEL PEAK 32(19Q13.33) WILD-TYPE"   "DEL PEAK 32(19Q13.33) MUTATED" 
                     TCGA-N8-A4PO                      TCGA-N8-A4PP 
"DEL PEAK 32(19Q13.33) WILD-TYPE"   "DEL PEAK 32(19Q13.33) MUTATED" 
                     TCGA-N8-A4PQ                      TCGA-N8-A56S 
"DEL PEAK 32(19Q13.33) WILD-TYPE"   "DEL PEAK 32(19Q13.33) MUTATED" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
"DEL PEAK 32(19Q13.33) WILD-TYPE" "DEL PEAK 32(19Q13.33) WILD-TYPE" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"DEL PEAK 32(19Q13.33) WILD-TYPE"   "DEL PEAK 32(19Q13.33) MUTATED" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RV 
  "DEL PEAK 32(19Q13.33) MUTATED"   "DEL PEAK 32(19Q13.33) MUTATED" 
                     TCGA-N8-A4PI                      TCGA-N8-A4PL 
"DEL PEAK 32(19Q13.33) WILD-TYPE" "DEL PEAK 32(19Q13.33) WILD-TYPE" 
                     TCGA-N8-A4PM                      TCGA-N8-A4PN 
"DEL PEAK 32(19Q13.33) WILD-TYPE"   "DEL PEAK 32(19Q13.33) MUTATED" 
                     TCGA-N8-A4PO                      TCGA-N8-A4PP 
"DEL PEAK 32(19Q13.33) WILD-TYPE"   "DEL PEAK 32(19Q13.33) MUTATED" 
                     TCGA-N8-A4PQ                      TCGA-N8-A56S 
"DEL PEAK 32(19Q13.33) WILD-TYPE"   "DEL PEAK 32(19Q13.33) MUTATED" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
"DEL PEAK 32(19Q13.33) WILD-TYPE" "DEL PEAK 32(19Q13.33) WILD-TYPE" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"DEL PEAK 32(19Q13.33) WILD-TYPE"   "DEL PEAK 32(19Q13.33) MUTATED" 
[1] "hr=" "3.1"
D53V2, continuous

Clustering(54) Variable = DEL PEAK 34(22Q13.31) MUTATION ANALYSIS
D54V1, survival
                                 sevent
clus2                             0 1
  DEL PEAK 34(22Q13.31) MUTATED   7 4
  DEL PEAK 34(22Q13.31) WILD-TYPE 2 1
  DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE 
                             11                               3 
  DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE 
                              4                               1 
$`DEL PEAK 34(22Q13.31) MUTATED`
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PO 
       69.63        59.70        14.63        13.71        16.34        14.40 
TCGA-N8-A4PP TCGA-N8-A56S TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
        7.20         9.70        23.47        15.16         5.49 

$`DEL PEAK 34(22Q13.31) WILD-TYPE`
TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-ND-A4W6 
       13.94         4.77        10.42 

  DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE 
                           5.49                            4.77 
  DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE 
                          69.63                           13.94 
  DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE 
                          14.63                           10.42 
[1] "5.5 - 69.6 (14.6)" "4.8 - 13.9 (10.4)"
                     TCGA-N5-A4RT                      TCGA-N5-A4RV 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-N8-A4PI                      TCGA-N8-A4PL 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-N8-A4PM                      TCGA-N8-A4PN 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-N8-A4PO                      TCGA-N8-A4PP 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-N8-A4PQ                      TCGA-N8-A56S 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RV 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-N8-A4PI                      TCGA-N8-A4PL 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-N8-A4PM                      TCGA-N8-A4PN 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-N8-A4PO                      TCGA-N8-A4PP 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-N8-A4PQ                      TCGA-N8-A56S 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RV 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-N8-A4PI                      TCGA-N8-A4PL 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-N8-A4PM                      TCGA-N8-A4PN 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-N8-A4PO                      TCGA-N8-A4PP 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-N8-A4PQ                      TCGA-N8-A56S 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
[1] "hr=" "2.8"
D54V2, continuous

Clustering(55) Variable = DEL PEAK 35(XP21.1) MUTATION ANALYSIS
D55V1, survival
                               sevent
clus2                           0 1
  DEL PEAK 35(XP21.1) MUTATED   4 4
  DEL PEAK 35(XP21.1) WILD-TYPE 5 1
  DEL PEAK 35(XP21.1) MUTATED DEL PEAK 35(XP21.1) WILD-TYPE 
                            8                             6 
  DEL PEAK 35(XP21.1) MUTATED DEL PEAK 35(XP21.1) WILD-TYPE 
                            4                             1 
$`DEL PEAK 35(XP21.1) MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S TCGA-ND-A4W6 
       69.63        14.63        14.40         7.20         9.70        10.42 
TCGA-ND-A4WA TCGA-ND-A4WF 
       23.47         5.49 

$`DEL PEAK 35(XP21.1) WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-ND-A4WC 
       59.70        13.71        16.34        13.94         4.77        15.16 

  DEL PEAK 35(XP21.1) MUTATED DEL PEAK 35(XP21.1) WILD-TYPE 
                         5.49                          4.77 
  DEL PEAK 35(XP21.1) MUTATED DEL PEAK 35(XP21.1) WILD-TYPE 
                        69.63                         59.70 
  DEL PEAK 35(XP21.1) MUTATED DEL PEAK 35(XP21.1) WILD-TYPE 
                        12.41                         14.55 
[1] "5.5 - 69.6 (12.4)" "4.8 - 59.7 (14.6)"
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "DEL PEAK 35(XP21.1) MUTATED" "DEL PEAK 35(XP21.1) WILD-TYPE" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
  "DEL PEAK 35(XP21.1) MUTATED" "DEL PEAK 35(XP21.1) WILD-TYPE" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
"DEL PEAK 35(XP21.1) WILD-TYPE" "DEL PEAK 35(XP21.1) WILD-TYPE" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "DEL PEAK 35(XP21.1) MUTATED"   "DEL PEAK 35(XP21.1) MUTATED" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
"DEL PEAK 35(XP21.1) WILD-TYPE"   "DEL PEAK 35(XP21.1) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK 35(XP21.1) MUTATED"   "DEL PEAK 35(XP21.1) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK 35(XP21.1) WILD-TYPE"   "DEL PEAK 35(XP21.1) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "DEL PEAK 35(XP21.1) MUTATED" "DEL PEAK 35(XP21.1) WILD-TYPE" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
  "DEL PEAK 35(XP21.1) MUTATED" "DEL PEAK 35(XP21.1) WILD-TYPE" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
"DEL PEAK 35(XP21.1) WILD-TYPE" "DEL PEAK 35(XP21.1) WILD-TYPE" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "DEL PEAK 35(XP21.1) MUTATED"   "DEL PEAK 35(XP21.1) MUTATED" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
"DEL PEAK 35(XP21.1) WILD-TYPE"   "DEL PEAK 35(XP21.1) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK 35(XP21.1) MUTATED"   "DEL PEAK 35(XP21.1) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK 35(XP21.1) WILD-TYPE"   "DEL PEAK 35(XP21.1) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RV 
  "DEL PEAK 35(XP21.1) MUTATED" "DEL PEAK 35(XP21.1) WILD-TYPE" 
                   TCGA-N8-A4PI                    TCGA-N8-A4PL 
  "DEL PEAK 35(XP21.1) MUTATED" "DEL PEAK 35(XP21.1) WILD-TYPE" 
                   TCGA-N8-A4PM                    TCGA-N8-A4PN 
"DEL PEAK 35(XP21.1) WILD-TYPE" "DEL PEAK 35(XP21.1) WILD-TYPE" 
                   TCGA-N8-A4PO                    TCGA-N8-A4PP 
  "DEL PEAK 35(XP21.1) MUTATED"   "DEL PEAK 35(XP21.1) MUTATED" 
                   TCGA-N8-A4PQ                    TCGA-N8-A56S 
"DEL PEAK 35(XP21.1) WILD-TYPE"   "DEL PEAK 35(XP21.1) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK 35(XP21.1) MUTATED"   "DEL PEAK 35(XP21.1) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK 35(XP21.1) WILD-TYPE"   "DEL PEAK 35(XP21.1) MUTATED" 
[1] "hr=" "3.4"
D55V2, continuous

Clustering(56) Variable = DEL PEAK 36(XQ25) MUTATION ANALYSIS
D56V1, survival
                             sevent
clus2                         0 1
  DEL PEAK 36(XQ25) MUTATED   3 0
  DEL PEAK 36(XQ25) WILD-TYPE 6 5
  DEL PEAK 36(XQ25) MUTATED DEL PEAK 36(XQ25) WILD-TYPE 
                          3                          11 
  DEL PEAK 36(XQ25) MUTATED DEL PEAK 36(XQ25) WILD-TYPE 
                          0                           5 
$`DEL PEAK 36(XQ25) MUTATED`
TCGA-N5-A4RT TCGA-N8-A4PP TCGA-N8-A56S 
       69.63         7.20         9.70 

$`DEL PEAK 36(XQ25) WILD-TYPE`
TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO 
       59.70        14.63        13.71        16.34        13.94        14.40 
TCGA-N8-A4PQ TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
        4.77        10.42        23.47        15.16         5.49 

  DEL PEAK 36(XQ25) MUTATED DEL PEAK 36(XQ25) WILD-TYPE 
                       7.20                        4.77 
  DEL PEAK 36(XQ25) MUTATED DEL PEAK 36(XQ25) WILD-TYPE 
                      69.63                       59.70 
  DEL PEAK 36(XQ25) MUTATED DEL PEAK 36(XQ25) WILD-TYPE 
                        9.7                        14.4 
[1] "7.2 - 69.6 (9.7)"  "4.8 - 59.7 (14.4)"
                 TCGA-N5-A4RT                  TCGA-N5-A4RV 
  "DEL PEAK 36(XQ25) MUTATED" "DEL PEAK 36(XQ25) WILD-TYPE" 
                 TCGA-N8-A4PI                  TCGA-N8-A4PL 
"DEL PEAK 36(XQ25) WILD-TYPE" "DEL PEAK 36(XQ25) WILD-TYPE" 
                 TCGA-N8-A4PM                  TCGA-N8-A4PN 
"DEL PEAK 36(XQ25) WILD-TYPE" "DEL PEAK 36(XQ25) WILD-TYPE" 
                 TCGA-N8-A4PO                  TCGA-N8-A4PP 
"DEL PEAK 36(XQ25) WILD-TYPE"   "DEL PEAK 36(XQ25) MUTATED" 
                 TCGA-N8-A4PQ                  TCGA-N8-A56S 
"DEL PEAK 36(XQ25) WILD-TYPE"   "DEL PEAK 36(XQ25) MUTATED" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
"DEL PEAK 36(XQ25) WILD-TYPE" "DEL PEAK 36(XQ25) WILD-TYPE" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"DEL PEAK 36(XQ25) WILD-TYPE" "DEL PEAK 36(XQ25) WILD-TYPE" 
                 TCGA-N5-A4RT                  TCGA-N5-A4RV 
  "DEL PEAK 36(XQ25) MUTATED" "DEL PEAK 36(XQ25) WILD-TYPE" 
                 TCGA-N8-A4PI                  TCGA-N8-A4PL 
"DEL PEAK 36(XQ25) WILD-TYPE" "DEL PEAK 36(XQ25) WILD-TYPE" 
                 TCGA-N8-A4PM                  TCGA-N8-A4PN 
"DEL PEAK 36(XQ25) WILD-TYPE" "DEL PEAK 36(XQ25) WILD-TYPE" 
                 TCGA-N8-A4PO                  TCGA-N8-A4PP 
"DEL PEAK 36(XQ25) WILD-TYPE"   "DEL PEAK 36(XQ25) MUTATED" 
                 TCGA-N8-A4PQ                  TCGA-N8-A56S 
"DEL PEAK 36(XQ25) WILD-TYPE"   "DEL PEAK 36(XQ25) MUTATED" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
"DEL PEAK 36(XQ25) WILD-TYPE" "DEL PEAK 36(XQ25) WILD-TYPE" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"DEL PEAK 36(XQ25) WILD-TYPE" "DEL PEAK 36(XQ25) WILD-TYPE" 
                 TCGA-N5-A4RT                  TCGA-N5-A4RV 
  "DEL PEAK 36(XQ25) MUTATED" "DEL PEAK 36(XQ25) WILD-TYPE" 
                 TCGA-N8-A4PI                  TCGA-N8-A4PL 
"DEL PEAK 36(XQ25) WILD-TYPE" "DEL PEAK 36(XQ25) WILD-TYPE" 
                 TCGA-N8-A4PM                  TCGA-N8-A4PN 
"DEL PEAK 36(XQ25) WILD-TYPE" "DEL PEAK 36(XQ25) WILD-TYPE" 
                 TCGA-N8-A4PO                  TCGA-N8-A4PP 
"DEL PEAK 36(XQ25) WILD-TYPE"   "DEL PEAK 36(XQ25) MUTATED" 
                 TCGA-N8-A4PQ                  TCGA-N8-A56S 
"DEL PEAK 36(XQ25) WILD-TYPE"   "DEL PEAK 36(XQ25) MUTATED" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
"DEL PEAK 36(XQ25) WILD-TYPE" "DEL PEAK 36(XQ25) WILD-TYPE" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"DEL PEAK 36(XQ25) WILD-TYPE" "DEL PEAK 36(XQ25) WILD-TYPE" 
[1] "hr="     "2.7e+08"
D56V2, continuous
> q(save="no")
