Analysis Overview
23 September 2013  |  analyses__2013_09_23
Maintainer Information
Citation Information
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2013): Analysis Overview for 23 September 2013. Broad Institute of MIT and Harvard. doi:10.7908/C1WS8RM8

This is an overview of all analysis pipelines from Firehose run "23 September 2013".


A total of 886 reports are available for analysis run "23 September 2013".

Note: These results are offered to the community as an additional reference point, enabling a wide range of cancer biologists, clinical investigators, and genome and computational scientists to easily incorporate TCGA into the backdrop of ongoing research. While every effort is made to ensure that Firehose input data and algorithms are of the highest possible quality, these analyses have not been reviewed by domain experts.

Cancer Types

Table 1.  Click "Browse" to view reports for a cancer type of interest. If you prefer to view reports on your own computer, you may download a ZIP archive containing all reports for a cancer type by clicking "Download".

Cancer Type Cohort Reports HTML ZIP
Adrenocortical Carcinoma ACC-TP 15 Browse Download
Bladder Urothelial Carcinoma BLCA-TP 32 Browse Download
Breast Invasive Carcinoma BRCA-TP 39 Browse Download
Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma CESC-TP 30 Browse Download
Colon Adenocarcinoma COAD-TP 40 Browse Download
Colorectal Adenocarcinoma COADREAD-TP 39 Browse Download
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma DLBC-TP 7 Browse Download
Esophageal Carcinoma ESCA-TP 9 Browse Download
Glioblastoma Multiforme GBM-TP 39 Browse Download
Head and Neck Squamous Cell Carcinoma HNSC-TP 33 Browse Download
Kidney Chromophobe KICH-TP 29 Browse Download
Kidney Renal Clear Cell Carcinoma KIRC-TP 40 Browse Download
Kidney Renal Papillary Cell Carcinoma KIRP-TP 32 Browse Download
Acute Myeloid Leukemia LAML-TB 28 Browse Download
Brain Lower Grade Glioma LGG-TP 39 Browse Download
Liver Hepatocellular Carcinoma LIHC-TP 21 Browse Download
Lung Adenocarcinoma LUAD-TP 40 Browse Download
Lung Squamous Cell Carcinoma LUSC-TP 38 Browse Download
Ovarian Serous Cystadenocarcinoma OV-TP 45 Browse Download
Pancreatic Adenocarcinoma PAAD-TP 30 Browse Download
PANCANCER cohort with 12 disease types PANCAN12-TP 7 Browse Download
Prostate Adenocarcinoma PRAD-TP 32 Browse Download
Rectum Adenocarcinoma READ-TP 40 Browse Download
Sarcoma SARC-TP 21 Browse Download
Skin Cutaneous Melanoma SKCM-TM 33 Browse Download
Stomach Adenocarcinoma STAD-TP 33 Browse Download
Thyroid Adenocarcinoma THCA-TP 34 Browse Download
Uterine Corpus Endometrioid Carcinoma UCEC-TP 40 Browse Download
Uterine Carcinosarcoma UCS-TP 21 Browse Download

An archive containing all reports for the 23 September 2013 run is available for download. Links to archives with reports for individual cancer types are included in Table 1.

Methods & Data
  • Summary Report Date = Mon Oct 21 15:43:08 2013

  • Protection = FALSE