		Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1q gain	0 (0%)	72	0.30554	1	0.25791	1	0.33851	1	0.057043	1	1	1	0.65132	1	1	1	0.63109	1
2p gain	0 (0%)	71	0.017542	1	0.095203	1	0.24014	1	0.018132	1	0.57909	1	0.29127	1	0.57909	1	0.27845	1
2q gain	0 (0%)	72	0.30554	1	0.037078	1	0.18522	1	0.057043	1	1	1	NA	NA	1	1	NA	NA
3p gain	0 (0%)	69	0.20106	1	0.3029	1	0.38553	1	0.52111	1	0.38557	1	0.44664	1	0.38557	1	0.52094	1
3q gain	0 (0%)	67	0.30494	1	0.36099	1	0.077108	1	0.91126	1	1	1	0.77596	1	1	1	0.877	1
4p gain	0 (0%)	50	6.8783e-06	0.0035	0.021976	1	4.1832e-06	0.00215	5.1629e-06	0.00264	0.38811	1	0.47033	1	0.77384	1	0.62035	1
4q gain	0 (0%)	52	2.0175e-05	0.0101	0.047265	1	3.0099e-05	0.0149	8.093e-06	0.0041	0.77454	1	0.85642	1	1	1	0.84951	1
5p gain	0 (0%)	30	2.0776e-06	0.00107	0.0046949	1	1.8652e-06	0.000964	2.399e-06	0.00124	1	1	0.7956	1	1	1	0.66592	1
5q gain	0 (0%)	32	3.0655e-05	0.0151	0.0020225	0.924	1.1622e-05	0.00583	7.1289e-07	0.000371	0.37416	1	0.9276	1	0.37416	1	0.38059	1
6p gain	0 (0%)	66	0.10481	1	0.94311	1	0.1801	1	1	1	1	1	1	1	1	1	1	1
6q gain	0 (0%)	66	0.1209	1	0.54472	1	0.36763	1	0.38462	1	0.43642	1	0.56437	1	0.43642	1	0.74708	1
7p gain	0 (0%)	39	0.00057704	0.274	0.026882	1	1.1096e-05	0.00559	0.00037278	0.179	0.77384	1	0.92834	1	0.77384	1	1	1
7q gain	0 (0%)	40	8.4271e-06	0.00426	0.0080457	1	1.6272e-08	8.53e-06	4.7153e-06	0.00241	1	1	0.86077	1	1	1	0.72486	1
8p gain	0 (0%)	50	0.0037551	1	0.15643	1	0.082155	1	0.11112	1	0.35508	1	0.33055	1	0.75831	1	0.54133	1
8q gain	0 (0%)	46	0.0083594	1	0.39504	1	0.22547	1	0.29177	1	0.76341	1	0.67495	1	1	1	0.84459	1
9p gain	0 (0%)	65	7.3811e-06	0.00375	0.0020517	0.936	0.00037005	0.178	0.00014298	0.0693	0.20442	1	0.18313	1	0.20442	1	0.22115	1
9q gain	0 (0%)	61	1.1257e-05	0.00566	0.0058547	1	0.00053952	0.257	4.1673e-05	0.0205	0.43642	1	0.56437	1	0.43642	1	0.74708	1
10p gain	0 (0%)	57	3.2592e-05	0.016	0.035568	1	3.1455e-05	0.0155	0.0001799	0.0871	1	1	0.6239	1	1	1	0.88646	1
10q gain	0 (0%)	58	0.0010955	0.514	0.090653	1	0.00040484	0.194	0.0016503	0.757	0.48637	1	0.43737	1	0.48637	1	0.78711	1
11q gain	0 (0%)	74	0.30424	1	0.3673	1	0.15009	1	0.4697	1	1	1	NA	NA	1	1	NA	NA
12p gain	0 (0%)	25	3.4615e-07	0.000181	0.065306	1	1.3081e-05	0.00655	0.00042314	0.202	0.35463	1	0.60064	1	0.35463	1	0.37264	1
12q gain	0 (0%)	24	5.9237e-06	0.00302	0.35547	1	0.0014629	0.676	0.011037	1	1	1	0.43586	1	1	1	0.38274	1
13q gain	0 (0%)	72	0.72553	1	0.23056	1	0.0036385	1	0.31727	1	0.61736	1	0.79884	1	0.61736	1	0.81162	1
14q gain	0 (0%)	61	0.0016675	0.764	0.089453	1	6.6004e-05	0.0323	9.006e-05	0.0438	0.0010939	0.514	0.0015462	0.713	0.0010939	0.514	0.002818	1
15q gain	0 (0%)	68	0.0068354	1	0.033289	1	0.0041994	1	0.0014383	0.667	0.11162	1	0.56437	1	0.11162	1	0.28172	1
16p gain	0 (0%)	38	2.0614e-11	1.08e-08	0.0038898	1	2.6579e-05	0.0132	3.1335e-07	0.000164	0.56121	1	0.43498	1	1	1	0.35813	1
16q gain	0 (0%)	39	5.1105e-11	2.68e-08	0.0028166	1	5.7782e-05	0.0283	1.6688e-06	0.000866	0.56121	1	0.43498	1	1	1	0.35813	1
19p gain	0 (0%)	35	8.314e-05	0.0405	0.04118	1	0.0030387	1	0.00020433	0.0987	0.77384	1	0.73804	1	0.77384	1	0.62035	1
19q gain	0 (0%)	37	2.319e-05	0.0115	0.01344	1	0.0029671	1	0.00057601	0.274	0.38516	1	0.50731	1	0.38516	1	0.38654	1
20p gain	0 (0%)	39	2.872e-06	0.00148	0.13982	1	2.5687e-05	0.0128	0.002506	1	0.0088701	1	0.010312	1	0.042809	1	0.012513	1
20q gain	0 (0%)	36	1.7007e-06	0.000881	0.035399	1	1.9368e-05	0.00968	0.00083846	0.396	0.07977	1	0.087573	1	0.07977	1	0.034955	1
21q gain	0 (0%)	55	0.0011711	0.547	0.018397	1	0.010434	1	0.00095007	0.447	0.35463	1	0.3248	1	0.12079	1	0.24758	1
Xq gain	0 (0%)	56	0.00021244	0.102	0.13626	1	5.7042e-07	0.000297	0.0051267	1	1	1	0.8392	1	0.52798	1	1	1
1p loss	0 (0%)	58	0.028829	1	0.093123	1	0.14006	1	0.053443	1	0.32578	1	0.15014	1	0.32578	1	0.28469	1
1q loss	0 (0%)	65	0.19908	1	0.19929	1	0.87309	1	0.67019	1	0.21677	1	0.26879	1	0.21677	1	0.13882	1
2p loss	0 (0%)	68	0.054276	1	0.042001	1	0.72458	1	1	1	0.38557	1	0.22323	1	0.38557	1	0.096881	1
2q loss	0 (0%)	70	0.0063284	1	0.0035556	1	0.45354	1	0.62331	1	0.15759	1	0.082408	1	0.15759	1	0.042038	1
3p loss	0 (0%)	64	0.36617	1	0.06622	1	0.085826	1	0.067826	1	1	1	0.31711	1	1	1	0.40355	1
3q loss	0 (0%)	63	0.029425	1	0.026364	1	0.055802	1	0.0042457	1	0.67795	1	0.52383	1	0.67795	1	0.71211	1
4p loss	0 (0%)	70	0.032606	1	0.027973	1	0.0013251	0.617	0.0039778	1	1	1	0.65132	1	1	1	0.63109	1
4q loss	0 (0%)	68	0.0057014	1	0.025318	1	0.0015615	0.718	0.0035671	1	1	1	0.65132	1	1	1	0.63109	1
5p loss	0 (0%)	70	0.77181	1	0.088252	1	0.11273	1	0.0025002	1	1	1	1	1	1	1	1	1
5q loss	0 (0%)	71	0.83309	1	0.09676	1	0.017007	1	0.0090616	1	1	1	1	1	1	1	1	1
6p loss	0 (0%)	71	0.21065	1	0.18155	1	0.75525	1	0.64934	1	0.44681	1	NA	NA	0.44681	1	NA	NA
6q loss	0 (0%)	71	0.21065	1	0.53262	1	0.75525	1	1	1	0.19426	1	NA	NA	0.19426	1	NA	NA
7q loss	0 (0%)	74	0.30424	1	0.036696	1	0.15009	1	0.044111	1	1	1	NA	NA	1	1	NA	NA
8p loss	0 (0%)	68	0.25978	1	0.38206	1	0.14998	1	0.13078	1	1	1	0.37313	1	1	1	0.43958	1
8q loss	0 (0%)	71	0.2737	1	0.080988	1	0.03106	1	0.025058	1	1	1	1	1	1	1	1	1
9p loss	0 (0%)	66	0.0014343	0.667	0.02286	1	6.9402e-05	0.0339	7.8799e-06	0.004	0.026495	1	0.18313	1	0.026495	1	0.056331	1
9q loss	0 (0%)	73	0.56108	1	0.19333	1	0.24758	1	0.092427	1	0.11737	1	0.53063	1	0.11737	1	0.27284	1
10p loss	0 (0%)	69	0.1785	1	0.24536	1	0.33485	1	0.31144	1	0.11737	1	0.16385	1	0.11737	1	0.27284	1
10q loss	0 (0%)	71	0.52007	1	0.33352	1	0.57402	1	0.41611	1	0.49491	1	NA	NA	0.49491	1	NA	NA
11p loss	0 (0%)	62	0.009063	1	0.05458	1	0.22013	1	0.76245	1	1	1	0.18204	1	1	1	0.18562	1
11q loss	0 (0%)	64	0.0066817	1	0.028913	1	0.17904	1	0.68643	1	1	1	0.18204	1	1	1	0.18562	1
12p loss	0 (0%)	74	0.30424	1	0.091735	1	1	1	0.25895	1	1	1	1	1	1	1	1	1
13q loss	0 (0%)	54	0.003845	1	0.069178	1	0.19066	1	0.30355	1	0.34187	1	0.76993	1	0.34187	1	0.62805	1
14q loss	0 (0%)	68	0.0028356	1	0.019485	1	0.091093	1	0.08615	1	0.31124	1	0.3122	1	0.31124	1	0.20192	1
15q loss	0 (0%)	66	0.29537	1	0.035101	1	0.033326	1	0.043546	1	0.31124	1	0.3122	1	0.31124	1	0.20192	1
16p loss	0 (0%)	73	0.10778	1	0.13269	1	0.041756	1	0.21118	1	0.44681	1	NA	NA	0.44681	1	NA	NA
16q loss	0 (0%)	73	0.10778	1	0.0078595	1	0.041756	1	0.011567	1	NA	NA	NA	NA	NA	NA	NA	NA
17p loss	0 (0%)	59	0.0030199	1	0.00081486	0.385	0.00021111	0.102	0.0014447	0.669	0.71108	1	0.25692	1	0.71108	1	0.47259	1
17q loss	0 (0%)	63	0.029425	1	0.03578	1	0.010463	1	0.0042457	1	0.11162	1	0.16592	1	0.11162	1	0.28172	1
18p loss	0 (0%)	53	0.11522	1	0.041972	1	0.2982	1	1	1	0.52028	1	0.68703	1	0.52028	1	0.33796	1
18q loss	0 (0%)	54	0.060271	1	0.26244	1	0.29227	1	0.85845	1	0.099861	1	0.27193	1	0.099861	1	0.15327	1
20p loss	0 (0%)	72	0.048511	1	0.26245	1	0.0937	1	0.020439	1	1	1	1	1	1	1	1	1
21q loss	0 (0%)	67	0.032845	1	0.20152	1	0.28962	1	0.468	1	0.64405	1	0.68812	1	0.15759	1	0.13452	1
22q loss	0 (0%)	48	0.10584	1	0.0096012	1	0.34811	1	0.2622	1	0.19705	1	0.47855	1	0.19705	1	0.24389	1
Xq loss	0 (0%)	69	0.024176	1	0.15355	1	0.58651	1	0.41278	1	1	1	1	1	1	1	1	1
