Molecular subtypes	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	0 (0%)	160	3.0377e-05	0.023	0.2795	1	0.38666	1	0.023784	1	0.072268	1	0.80004	1	0.95673	1	0.35558	1	0.83337	1	1	1
1q gain	0 (0%)	142	0.037162	1	0.39616	1	0.67551	1	0.88495	1	0.0047801	1	1	1	0.71384	1	0.68847	1	0.36251	1	0.33472	1
2p gain	0 (0%)	152	5.3729e-05	0.0404	0.012966	1	0.2226	1	0.62727	1	0.018631	1	0.47765	1	0.091171	1	0.084125	1	0.16347	1	0.012859	1
2q gain	0 (0%)	169	0.0044846	1	0.0079344	1	0.36911	1	0.56347	1	0.0041951	1	0.19977	1	0.12695	1	0.057584	1	0.16647	1	0.0097824	1
3p gain	0 (0%)	149	0.0010954	0.806	0.0033672	1	0.035374	1	0.18518	1	0.07909	1	0.0039586	1	0.033487	1	0.022403	1	0.01769	1	0.1932	1
3q gain	0 (0%)	133	1.1791e-06	0.000897	0.096721	1	0.10246	1	0.19984	1	0.035651	1	0.056104	1	0.2164	1	0.1874	1	0.094078	1	0.053331	1
4p gain	0 (0%)	171	0.22415	1	0.67139	1	0.86004	1	0.52074	1	0.75643	1	0.9194	1	0.19844	1	0.54427	1	0.91833	1	0.68169	1
4q gain	0 (0%)	175	0.037658	1	1	1	0.5415	1	0.28698	1	0.76306	1	0.69031	1	0.201	1	0.38726	1	0.60895	1	0.76129	1
5p gain	0 (0%)	130	7.396e-05	0.0555	0.83214	1	0.022668	1	0.4455	1	0.086435	1	0.019026	1	0.60883	1	0.25538	1	0.519	1	0.25971	1
5q gain	0 (0%)	162	0.2623	1	0.13145	1	0.084529	1	0.9556	1	0.52808	1	0.58263	1	0.55574	1	0.65405	1	0.40156	1	0.67863	1
6p gain	0 (0%)	165	0.043271	1	0.2349	1	0.68415	1	0.53282	1	0.41547	1	1	1	0.28387	1	0.13439	1	0.31064	1	0.87934	1
6q gain	0 (0%)	176	0.012538	1	1	1	0.54887	1	0.0079033	1	0.11228	1	1	1	0.04492	1	0.049545	1	0.15548	1	0.34689	1
7p gain	0 (0%)	130	0.0021391	1	0.0021777	1	0.050231	1	0.3802	1	0.049259	1	0.77022	1	0.09468	1	0.26874	1	0.78513	1	0.48352	1
7q gain	0 (0%)	137	0.00098663	0.727	0.0073135	1	0.39167	1	0.76299	1	0.14484	1	0.65958	1	0.97437	1	0.27147	1	0.76483	1	0.94304	1
8p gain	0 (0%)	163	0.013822	1	0.02715	1	0.16499	1	0.02832	1	0.027223	1	0.038907	1	0.39494	1	0.72235	1	0.40934	1	0.25607	1
8q gain	0 (0%)	126	2.5314e-05	0.0192	0.096567	1	0.3672	1	0.1401	1	0.14981	1	0.29606	1	0.93409	1	0.86472	1	0.79101	1	0.27324	1
9p gain	0 (0%)	168	0.12329	1	0.42964	1	0.072072	1	0.57062	1	0.0017592	1	0.16302	1	0.36734	1	1	1	0.93597	1	0.74044	1
9q gain	0 (0%)	169	0.81938	1	0.22141	1	0.75493	1	0.40987	1	0.021175	1	0.1348	1	1	1	0.71264	1	0.80619	1	0.40467	1
10p gain	0 (0%)	146	4.5635e-05	0.0344	0.39849	1	0.15724	1	0.34224	1	0.5758	1	0.1023	1	0.34368	1	0.18906	1	0.10805	1	0.57805	1
10q gain	0 (0%)	173	0.057412	1	0.82468	1	0.68415	1	0.35627	1	0.48143	1	0.55142	1	0.61554	1	1	1	0.5961	1	1	1
11p gain	0 (0%)	173	0.041594	1	0.75072	1	0.75	1	0.59624	1	0.16772	1	0.66982	1	0.2202	1	0.4757	1	0.66006	1	0.80069	1
11q gain	0 (0%)	168	0.15104	1	0.87796	1	0.64867	1	0.63719	1	0.29213	1	0.10256	1	0.7197	1	0.63879	1	0.93597	1	1	1
12p gain	0 (0%)	153	0.0019117	1	0.78503	1	0.13764	1	0.16208	1	0.036217	1	0.052691	1	0.052407	1	1	1	0.1435	1	0.073035	1
12q gain	0 (0%)	162	0.099214	1	0.35401	1	0.02212	1	0.022646	1	0.011942	1	0.037972	1	0.064077	1	0.18578	1	0.030633	1	0.064423	1
13q gain	0 (0%)	156	0.0099462	1	0.7657	1	0.76005	1	0.6595	1	0.080421	1	0.2906	1	0.73151	1	0.5606	1	0.92341	1	0.87557	1
14q gain	0 (0%)	171	0.72357	1	0.92673	1	0.39478	1	0.73316	1	0.1019	1	0.059498	1	1	1	0.67748	1	0.10008	1	0.35353	1
15q gain	0 (0%)	176	1	1	0.18848	1	0.52171	1	1	1	0.30027	1	0.20619	1	0.57107	1	1	1	0.48856	1	0.42876	1
16p gain	0 (0%)	169	0.071075	1	1	1	0.2027	1	0.88943	1	0.15501	1	0.75073	1	1	1	0.85442	1	0.74982	1	1	1
16q gain	0 (0%)	166	0.013688	1	0.56249	1	0.078186	1	0.39456	1	0.047199	1	0.16992	1	0.83891	1	0.77799	1	0.19352	1	0.44103	1
17p gain	0 (0%)	174	0.41922	1	0.8142	1	0.84082	1	1	1	0.070525	1	0.32899	1	0.5764	1	0.25069	1	0.56529	1	0.61568	1
17q gain	0 (0%)	153	0.0093973	1	0.003349	1	0.0068455	1	0.0048698	1	0.0055163	1	0.049102	1	0.026818	1	0.031756	1	0.00025649	0.191	0.0026871	1
18p gain	0 (0%)	150	4.5195e-05	0.0341	0.0036382	1	0.81236	1	0.94273	1	0.058255	1	0.14008	1	0.5693	1	0.089904	1	0.52314	1	0.5049	1
18q gain	0 (0%)	170	0.054933	1	0.014497	1	0.58312	1	0.22126	1	0.46396	1	0.54481	1	0.54831	1	0.32073	1	0.62936	1	0.77207	1
19p gain	0 (0%)	168	0.55994	1	0.099284	1	0.75064	1	0.88992	1	0.049565	1	0.034735	1	0.39219	1	0.37766	1	0.1969	1	0.11161	1
19q gain	0 (0%)	149	0.0013113	0.961	0.30121	1	0.44691	1	0.60979	1	0.1369	1	0.17543	1	0.47315	1	0.86563	1	0.60902	1	0.41136	1
20p gain	0 (0%)	122	0.081182	1	0.082893	1	0.32571	1	0.47441	1	0.18846	1	0.13252	1	0.78578	1	0.42964	1	0.69776	1	0.46456	1
20q gain	0 (0%)	114	0.013775	1	0.0023727	1	0.059824	1	0.68007	1	0.013257	1	0.045061	1	0.039104	1	0.23547	1	0.11043	1	0.027468	1
21q gain	0 (0%)	152	0.0013092	0.961	0.68896	1	0.22764	1	0.67104	1	0.11287	1	0.032753	1	0.084478	1	0.39175	1	0.19605	1	0.29969	1
22q gain	0 (0%)	169	0.19542	1	0.20534	1	0.14669	1	0.51992	1	0.2265	1	0.60988	1	0.013275	1	0.85442	1	0.29632	1	0.47628	1
Xq gain	0 (0%)	175	0.0088239	1	0.61532	1	0.96363	1	0.86006	1	0.21436	1	0.69031	1	0.42122	1	0.29166	1	0.26142	1	0.082675	1
1p loss	0 (0%)	178	0.20317	1	0.12376	1	NA	NA	NA	NA	0.26548	1	0.044646	1	0.43822	1	1	1	0.18048	1	0.051487	1
2p loss	0 (0%)	173	0.82679	1	0.03349	1	0.23002	1	0.26902	1	0.078327	1	0.043437	1	0.44077	1	1	1	0.080849	1	0.0077373	1
2q loss	0 (0%)	161	0.0014733	1	0.16953	1	0.75726	1	0.61241	1	0.0047602	1	0.058245	1	0.82803	1	0.52564	1	0.32605	1	0.043184	1
3p loss	0 (0%)	170	1	1	1	1	0.0337	1	0.36655	1	0.018988	1	0.011306	1	0.14788	1	0.11719	1	0.13909	1	0.26106	1
3q loss	0 (0%)	179	0.79464	1	1	1	NA	NA	NA	NA	0.66889	1	1	1	1	1	1	1	0.78177	1	1	1
4p loss	0 (0%)	148	0.014271	1	0.2981	1	0.43029	1	0.93336	1	0.26377	1	0.74817	1	0.37205	1	0.65817	1	0.19857	1	0.56074	1
4q loss	0 (0%)	154	0.52428	1	0.18965	1	0.10645	1	0.86144	1	0.10604	1	0.56479	1	0.77422	1	0.17752	1	0.25366	1	0.74591	1
5p loss	0 (0%)	167	0.052718	1	1	1	0.32574	1	0.16988	1	0.86798	1	0.52701	1	0.12204	1	0.5621	1	0.21712	1	0.23638	1
5q loss	0 (0%)	140	3.2628e-05	0.0246	0.11833	1	0.48385	1	0.19354	1	0.35529	1	0.5525	1	0.16002	1	0.49046	1	0.60424	1	1	1
6p loss	0 (0%)	161	0.14807	1	0.16953	1	0.19565	1	0.54071	1	0.34428	1	0.48414	1	0.22742	1	1	1	0.25448	1	1	1
6q loss	0 (0%)	147	0.00011485	0.0857	0.010077	1	0.1053	1	0.83475	1	0.47429	1	0.21375	1	1	1	0.9351	1	0.77579	1	0.49488	1
7q loss	0 (0%)	176	0.02595	1	0.093848	1	NA	NA	NA	NA	0.84355	1	0.36283	1	0.35232	1	0.69956	1	0.13014	1	1	1
8p loss	0 (0%)	124	2.1747e-09	1.66e-06	0.53464	1	0.43168	1	0.054174	1	0.13892	1	0.082492	1	0.034963	1	0.06639	1	0.10389	1	0.03763	1
8q loss	0 (0%)	174	0.293	1	0.36852	1	0.64317	1	0.082597	1	0.25541	1	0.51096	1	0.32978	1	0.090117	1	0.3565	1	0.045754	1
9p loss	0 (0%)	128	2.9714e-06	0.00226	0.00017786	0.133	0.15033	1	0.0015237	1	0.00048608	0.36	1.3847e-05	0.0105	0.34353	1	0.54778	1	0.074149	1	0.015019	1
9q loss	0 (0%)	130	7.6065e-05	0.057	0.00045931	0.341	0.016608	1	0.001172	0.861	0.00053478	0.396	3.0473e-06	0.00231	0.58137	1	0.70183	1	0.085006	1	0.041449	1
10p loss	0 (0%)	162	0.12789	1	0.48731	1	0.75865	1	0.34298	1	0.11128	1	0.27344	1	0.86403	1	0.24064	1	0.70662	1	0.34505	1
10q loss	0 (0%)	148	0.00026318	0.196	0.0025987	1	0.60073	1	0.38224	1	0.23525	1	0.20714	1	0.06396	1	0.058401	1	0.063607	1	0.013461	1
11p loss	0 (0%)	130	9.9904e-05	0.0746	9.4786e-05	0.0709	0.025942	1	0.46383	1	0.0087535	1	0.0082807	1	0.17247	1	0.81593	1	0.19328	1	0.1401	1
11q loss	0 (0%)	142	0.0026971	1	0.043051	1	0.063778	1	0.032791	1	0.012439	1	0.060365	1	0.67431	1	0.78521	1	0.40875	1	0.4366	1
12p loss	0 (0%)	175	0.04865	1	0.43278	1	0.96363	1	0.86006	1	0.24329	1	0.24252	1	0.88798	1	1	1	0.68878	1	0.86801	1
12q loss	0 (0%)	174	0.41922	1	0.8142	1	0.35582	1	0.44165	1	0.22387	1	0.41678	1	0.5764	1	0.25069	1	0.40467	1	0.61568	1
13q loss	0 (0%)	159	0.00090231	0.666	0.054706	1	0.1008	1	0.062831	1	0.20578	1	0.38341	1	0.77118	1	0.4132	1	0.87723	1	1	1
14q loss	0 (0%)	154	0.00058765	0.434	0.1116	1	0.12602	1	0.060084	1	0.11683	1	0.10002	1	0.022814	1	0.19484	1	0.045515	1	0.45209	1
15q loss	0 (0%)	156	0.037433	1	0.56508	1	0.027026	1	0.097917	1	0.45862	1	0.23019	1	0.37576	1	0.026271	1	0.56961	1	0.79978	1
16p loss	0 (0%)	159	1.9164e-07	0.000146	0.30463	1	0.33601	1	0.36164	1	0.20711	1	0.77145	1	0.023788	1	0.02214	1	0.12836	1	0.60617	1
16q loss	0 (0%)	159	4.1006e-07	0.000312	0.083249	1	0.10275	1	0.97555	1	0.11798	1	0.74013	1	0.11229	1	0.057437	1	0.018427	1	0.28759	1
17p loss	0 (0%)	131	0.25192	1	0.37658	1	0.97368	1	0.44581	1	0.17617	1	0.30058	1	0.018957	1	0.013544	1	0.058551	1	0.070493	1
17q loss	0 (0%)	176	1	1	0.040484	1	0.7353	1	0.42619	1	0.45211	1	0.30819	1	0.48381	1	0.50337	1	0.3509	1	0.23028	1
18p loss	0 (0%)	158	0.14643	1	0.2796	1	0.73147	1	0.78463	1	0.89517	1	0.55486	1	0.28144	1	0.011394	1	0.0085181	1	0.010754	1
18q loss	0 (0%)	140	0.0050802	1	0.23799	1	0.75785	1	0.66915	1	0.1522	1	0.092916	1	0.24031	1	0.22351	1	0.65756	1	0.69091	1
19p loss	0 (0%)	168	0.037476	1	0.59926	1	0.73943	1	0.15104	1	0.24089	1	0.51353	1	0.36734	1	0.37766	1	0.437	1	0.58953	1
19q loss	0 (0%)	175	0.08898	1	1	1	0.71365	1	0.10862	1	0.21436	1	0.42016	1	0.022255	1	0.38726	1	0.062034	1	0.13994	1
20p loss	0 (0%)	174	0.37082	1	0.12639	1	0.30111	1	0.02724	1	0.73685	1	0.15108	1	0.45799	1	0.25069	1	0.10015	1	0.6911	1
21q loss	0 (0%)	160	0.20194	1	0.91629	1	0.36051	1	0.41932	1	0.81103	1	0.53072	1	0.63818	1	0.16939	1	0.15829	1	0.85972	1
22q loss	0 (0%)	146	6.2171e-05	0.0467	0.21862	1	0.51071	1	0.075254	1	0.078784	1	0.58339	1	0.57803	1	0.012944	1	0.44595	1	0.96604	1
Xq loss	0 (0%)	176	0.02595	1	0.75807	1	0.77971	1	0.63617	1	0.16221	1	0.30819	1	0.30878	1	0.50337	1	0.3509	1	0.23028	1