Molecular subtypes	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1p34.3)	0 (0%)	129	2.0333e-05	0.0128	0.05892	1	0.13382	1	0.51721	1	0.29782	1	0.23573	1	0.011098	1	0.46238	1	0.31498	1	0.3429	1
Amp Peak  2(1q21.3)	0 (0%)	89	1.005e-08	6.59e-06	0.25623	1	0.22638	1	0.20795	1	0.015476	1	0.12005	1	0.069119	1	0.28401	1	0.23784	1	0.13363	1
Amp Peak  3(1q23.3)	0 (0%)	83	7.8919e-07	0.000506	0.037804	1	0.53637	1	0.3527	1	0.028753	1	0.45212	1	0.0012692	0.764	0.00060464	0.367	0.0037786	1	0.0027638	1
Amp Peak  4(3p25.2)	0 (0%)	103	7.2803e-07	0.000467	0.018799	1	0.12931	1	0.046948	1	1.8271e-05	0.0115	3.9257e-05	0.0244	0.0004603	0.281	2.4424e-05	0.0153	0.00016996	0.105	3.7419e-05	0.0233
Amp Peak  5(3q26.32)	0 (0%)	84	0.0012716	0.764	0.76773	1	0.38912	1	0.16086	1	0.01052	1	0.96133	1	0.70408	1	0.39485	1	0.486	1	0.084261	1
Amp Peak  6(4p16.3)	0 (0%)	142	0.070853	1	0.22155	1	0.027455	1	0.0075686	1	0.051555	1	0.014396	1	0.042699	1	0.12974	1	0.028712	1	0.46575	1
Amp Peak  7(4q13.3)	0 (0%)	150	1.9525e-05	0.0123	0.11082	1	0.50465	1	0.88024	1	0.97017	1	0.53079	1	0.23711	1	0.48718	1	0.24367	1	0.68839	1
Amp Peak  8(5p15.1)	0 (0%)	95	4.3988e-08	2.88e-05	0.37417	1	0.0024393	1	0.048657	1	0.0012719	0.764	0.02016	1	0.27674	1	0.18842	1	0.44141	1	0.33919	1
Amp Peak  9(6p22.3)	0 (0%)	110	4.6142e-13	3.05e-10	0.074526	1	0.29919	1	0.53979	1	0.18308	1	0.9799	1	0.20124	1	0.53881	1	0.42591	1	0.41641	1
Amp Peak 10(6q12)	0 (0%)	152	0.023081	1	0.71331	1	0.76158	1	0.037621	1	0.047546	1	0.55243	1	0.43219	1	0.01696	1	0.60504	1	0.7294	1
Amp Peak 11(6q21)	0 (0%)	164	0.0071641	1	0.43464	1	0.48243	1	0.1001	1	0.069787	1	0.35864	1	0.40332	1	0.61828	1	0.89825	1	0.58354	1
Amp Peak 12(7p21.1)	0 (0%)	93	3.6308e-05	0.0227	0.0037326	1	0.19374	1	0.55138	1	0.094462	1	0.41146	1	0.37869	1	0.12721	1	0.41635	1	0.65813	1
Amp Peak 13(7p11.2)	0 (0%)	91	3.6424e-07	0.000236	0.002757	1	0.087183	1	0.95781	1	0.33148	1	0.83804	1	0.54878	1	0.44792	1	0.22912	1	0.34689	1
Amp Peak 14(8p11.23)	0 (0%)	126	0.00020165	0.124	0.18526	1	0.7113	1	0.81969	1	0.7589	1	0.70953	1	0.27888	1	0.74353	1	0.36618	1	0.66372	1
Amp Peak 15(8p11.21)	0 (0%)	125	0.00060041	0.366	0.0014369	0.855	0.94443	1	0.95529	1	0.21491	1	0.79661	1	0.16039	1	0.48571	1	0.17929	1	0.10567	1
Amp Peak 16(8q22.3)	0 (0%)	66	6.6863e-07	0.00043	0.0073787	1	0.029021	1	0.090173	1	0.6702	1	0.36703	1	0.026485	1	0.13238	1	0.011486	1	0.03418	1
Amp Peak 17(8q24.21)	0 (0%)	72	0.00032191	0.198	0.016508	1	0.032293	1	0.14074	1	0.45967	1	0.66323	1	0.064774	1	0.2555	1	0.10213	1	0.16482	1
Amp Peak 18(10p15.1)	0 (0%)	103	1.6434e-09	1.08e-06	0.26528	1	0.32571	1	0.68373	1	0.44291	1	0.065369	1	0.25126	1	0.12337	1	0.079871	1	0.42677	1
Amp Peak 19(11q13.3)	0 (0%)	112	0.00064451	0.391	0.20242	1	0.26925	1	0.074153	1	0.062166	1	1	1	0.094075	1	0.055976	1	0.68479	1	0.91216	1
Amp Peak 20(11q22.1)	0 (0%)	149	0.27165	1	0.31939	1	0.64119	1	0.27116	1	0.33901	1	0.18774	1	0.38984	1	0.11334	1	0.56908	1	0.51387	1
Amp Peak 21(12q15)	0 (0%)	125	0.0056678	1	0.23476	1	0.049693	1	0.026772	1	0.080144	1	0.10902	1	0.11842	1	0.01984	1	0.018346	1	0.027481	1
Amp Peak 22(13q22.1)	0 (0%)	126	0.23573	1	0.49264	1	0.94353	1	0.88729	1	0.71702	1	0.81228	1	0.55482	1	0.70808	1	0.69078	1	0.94996	1
Amp Peak 23(16p12.1)	0 (0%)	136	0.0015657	0.93	0.60904	1	0.38715	1	0.43811	1	0.42122	1	0.35633	1	0.51426	1	0.80234	1	0.92472	1	0.37078	1
Amp Peak 24(17q11.2)	0 (0%)	101	3.8942e-06	0.00248	0.0022225	1	0.059235	1	0.12738	1	0.0006011	0.366	0.0022276	1	0.0067112	1	0.0068843	1	0.0008887	0.537	0.0013792	0.823
Amp Peak 25(17q12)	0 (0%)	106	2.8862e-05	0.0181	0.11533	1	0.1227	1	0.032905	1	0.023797	1	0.025023	1	0.0021094	1	0.0075232	1	0.0019617	1	0.0022363	1
Amp Peak 26(19q12)	0 (0%)	106	5.9467e-08	3.89e-05	0.11533	1	0.78195	1	0.90734	1	0.70272	1	0.38099	1	0.26761	1	0.18268	1	0.13335	1	0.40537	1
Amp Peak 27(19q13.43)	0 (0%)	109	4.016e-06	0.00255	0.0093532	1	0.39924	1	0.55527	1	0.37831	1	0.72133	1	0.28013	1	0.030803	1	0.055722	1	0.059826	1
Amp Peak 28(20q11.21)	0 (0%)	63	1.0869e-06	0.000696	0.13162	1	0.68802	1	0.068203	1	0.32881	1	0.20064	1	0.17638	1	0.1561	1	0.029248	1	0.43786	1
Amp Peak 29(22q11.23)	0 (0%)	142	0.0127	1	0.061724	1	0.59201	1	0.71397	1	0.96538	1	0.5525	1	0.22983	1	0.53835	1	0.9718	1	0.55996	1
Del Peak  1(1p36.11)	0 (0%)	146	0.62363	1	0.18817	1	0.33517	1	0.025918	1	0.33409	1	0.029947	1	0.91432	1	0.42761	1	0.55237	1	0.35167	1
Del Peak  2(1q32.1)	0 (0%)	149	0.019794	1	0.50239	1	0.58141	1	0.72731	1	0.76532	1	0.023099	1	0.72393	1	0.60677	1	0.16657	1	0.77301	1
Del Peak  3(2q22.1)	0 (0%)	128	0.0013829	0.824	0.37065	1	0.20643	1	0.53969	1	0.046853	1	0.20285	1	0.34353	1	0.60706	1	0.11036	1	0.41964	1
Del Peak  4(2q34)	0 (0%)	106	5.9467e-08	3.89e-05	0.055692	1	0.45138	1	0.21395	1	0.29287	1	0.15792	1	0.12685	1	0.27002	1	0.16413	1	0.13162	1
Del Peak  5(2q37.1)	0 (0%)	92	8.8782e-08	5.78e-05	0.0040518	1	0.46677	1	0.27853	1	0.070001	1	0.12241	1	0.079504	1	0.11214	1	0.098233	1	0.079666	1
Del Peak  6(3p21.31)	0 (0%)	127	0.33256	1	0.18679	1	0.029599	1	0.031745	1	1.8331e-05	0.0116	0.00053091	0.324	0.056305	1	0.12023	1	0.18563	1	0.16872	1
Del Peak  7(3p14.2)	0 (0%)	126	0.10311	1	0.36194	1	0.077596	1	0.065012	1	4.2175e-05	0.0261	0.00037015	0.227	0.63516	1	0.33326	1	0.53271	1	0.25242	1
Del Peak  8(3p12.3)	0 (0%)	134	0.087921	1	0.71334	1	0.41868	1	0.04828	1	9.8563e-05	0.061	0.0037154	1	0.2519	1	0.43715	1	0.79582	1	0.53628	1
Del Peak  9(4q22.1)	0 (0%)	112	0.042247	1	0.3278	1	0.51295	1	0.42657	1	0.06411	1	0.020043	1	0.35844	1	0.87509	1	0.031936	1	0.11269	1
Del Peak 10(4q34.2)	0 (0%)	106	0.00019785	0.122	0.6527	1	0.45284	1	0.82091	1	0.40177	1	0.72399	1	0.02724	1	0.015685	1	0.035693	1	0.013651	1
Del Peak 11(5q11.2)	0 (0%)	91	6.9283e-08	4.52e-05	0.046058	1	0.96932	1	0.42224	1	0.058557	1	0.52323	1	0.16429	1	0.088432	1	0.22016	1	0.1097	1
Del Peak 12(5q35.1)	0 (0%)	94	3.1918e-06	0.00203	0.0042791	1	0.34068	1	0.29028	1	0.42259	1	0.17481	1	0.10791	1	0.19725	1	0.42488	1	0.34036	1
Del Peak 13(6p25.3)	0 (0%)	135	0.063119	1	0.11	1	0.80802	1	0.67824	1	0.10965	1	0.53136	1	0.14509	1	0.51343	1	0.53856	1	0.28116	1
Del Peak 14(6q21)	0 (0%)	101	4.0546e-07	0.000262	0.013242	1	0.84261	1	0.63012	1	0.56354	1	0.035317	1	0.16363	1	0.23242	1	0.20286	1	0.58684	1
Del Peak 15(6q27)	0 (0%)	101	3.8942e-06	0.00248	0.0012812	0.767	0.6573	1	0.63012	1	0.45913	1	0.063843	1	0.04067	1	0.10866	1	0.20286	1	0.36622	1
Del Peak 16(8p23.3)	0 (0%)	83	2.6146e-09	1.72e-06	0.11148	1	0.5227	1	0.23379	1	0.0041501	1	0.018984	1	0.017848	1	0.10037	1	0.045511	1	0.023267	1
Del Peak 17(8p12)	0 (0%)	94	5.6007e-07	0.000361	0.38907	1	0.54829	1	0.51446	1	0.034456	1	0.24614	1	0.022705	1	0.011846	1	0.11259	1	0.024699	1
Del Peak 18(9p23)	0 (0%)	102	1.2401e-05	0.00785	0.44735	1	0.23466	1	0.19771	1	0.7018	1	0.22766	1	0.27243	1	0.71022	1	0.38777	1	0.93564	1
Del Peak 19(9p21.3)	0 (0%)	76	9.5958e-08	6.24e-05	0.74877	1	0.41453	1	0.0024129	1	0.4451	1	0.38502	1	0.60852	1	0.46213	1	0.5639	1	0.83471	1
Del Peak 20(9q22.33)	0 (0%)	106	0.00035685	0.219	0.0013572	0.812	0.084486	1	0.0021434	1	0.0018591	1	3.7383e-05	0.0233	0.45114	1	0.15382	1	0.029591	1	0.064333	1
Del Peak 21(10p11.22)	0 (0%)	146	0.56985	1	0.070958	1	0.74421	1	0.58797	1	0.032047	1	0.14202	1	0.19178	1	0.052029	1	0.21456	1	0.12165	1
Del Peak 22(10q23.31)	0 (0%)	107	3.4588e-05	0.0217	0.002678	1	0.64401	1	0.689	1	0.084488	1	0.13321	1	0.30563	1	0.14399	1	0.13206	1	0.09959	1
Del Peak 23(11p15.5)	0 (0%)	95	2.0232e-06	0.00129	0.0098159	1	0.34812	1	0.77867	1	0.040298	1	0.0087504	1	0.0017441	1	0.012861	1	0.004155	1	0.33919	1
Del Peak 24(11q25)	0 (0%)	118	0.009745	1	0.053075	1	0.8528	1	0.79968	1	0.034816	1	0.051503	1	0.37577	1	0.23673	1	0.31494	1	0.76653	1
Del Peak 25(13q14.2)	0 (0%)	108	2.8328e-07	0.000184	0.41546	1	0.0084927	1	0.0033563	1	0.013626	1	0.068198	1	0.92303	1	0.84287	1	0.30803	1	0.39166	1
Del Peak 26(14q12)	0 (0%)	131	0.0002107	0.13	0.25682	1	0.14877	1	0.089925	1	0.052805	1	0.050048	1	0.031743	1	0.040507	1	0.049098	1	0.091169	1
Del Peak 27(14q24.1)	0 (0%)	129	0.0019857	1	0.18763	1	0.5415	1	0.23313	1	0.028116	1	0.0018524	1	0.0011649	0.702	0.0070792	1	0.0091034	1	0.015068	1
Del Peak 28(15q13.1)	0 (0%)	113	5.6444e-07	0.000363	0.0089947	1	0.28639	1	0.4555	1	0.10525	1	0.30323	1	0.045275	1	0.047815	1	0.057325	1	0.031409	1
Del Peak 29(16p13.3)	0 (0%)	112	3.8007e-07	0.000246	0.28502	1	0.19248	1	0.20194	1	0.71945	1	0.48614	1	0.96015	1	0.64443	1	0.64405	1	0.5858	1
Del Peak 30(16q23.1)	0 (0%)	136	3.1849e-06	0.00203	0.032695	1	0.42666	1	0.10706	1	0.063478	1	0.90304	1	0.032006	1	0.10198	1	0.13412	1	0.11882	1
Del Peak 31(17p12)	0 (0%)	89	4.0565e-05	0.0252	0.053547	1	0.20054	1	0.44365	1	0.048952	1	0.087036	1	0.30595	1	0.88264	1	0.56201	1	0.67266	1
Del Peak 32(18q23)	0 (0%)	110	0.01578	1	0.26664	1	0.59924	1	1	1	0.48522	1	0.33608	1	0.0096565	1	0.0047375	1	0.16559	1	0.1336	1
Del Peak 33(19p13.3)	0 (0%)	112	0.0016395	0.972	0.74227	1	0.82044	1	0.72313	1	0.47504	1	0.60631	1	0.21878	1	0.2641	1	0.21921	1	0.47473	1
Del Peak 34(22q13.31)	0 (0%)	108	4.796e-09	3.15e-06	0.079155	1	0.32895	1	0.0051199	1	0.12707	1	0.28568	1	0.98008	1	0.12962	1	0.45632	1	0.3742	1
Del Peak 35(Xp11.3)	0 (0%)	134	0.0030328	1	0.039009	1	0.35842	1	0.46818	1	0.1816	1	0.4208	1	0.20202	1	1	1	0.044997	1	0.27096	1
Del Peak 36(Xq21.33)	0 (0%)	140	0.003076	1	0.0017416	1	0.9628	1	0.13737	1	0.048183	1	0.37738	1	0.17831	1	0.43375	1	0.064146	1	0.11584	1
Del Peak 37(Xq23)	0 (0%)	143	0.018018	1	0.0007406	0.448	0.99595	1	0.21238	1	0.087545	1	0.37865	1	0.10097	1	0.30312	1	0.033439	1	0.067104	1