Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	0 (0%)	114	0.35376	1	0.25398	1	0.1582	1	0.54388	1	0.98232	1	0.82758	1	0.51398	1	0.6749	1
1q gain	0 (0%)	97	0.023822	1	0.63495	1	0.37549	1	0.24879	1	0.25209	1	0.076438	1	0.8958	1	0.059943	1
2p gain	0 (0%)	132	0.007502	1	0.013785	1	0.35129	1	0.16973	1	0.56345	1	0.056696	1	0.45167	1	0.15974	1
2q gain	0 (0%)	149	0.092209	1	0.026161	1	0.20481	1	0.013887	1	1	1	0.63717	1	1	1	0.86208	1
3p gain	0 (0%)	134	0.956	1	0.037295	1	0.081335	1	0.068169	1	0.38539	1	1	1	0.67882	1	0.10701	1
3q gain	0 (0%)	79	0.00045376	0.264	0.0002697	0.158	0.0030218	1	0.00032838	0.191	0.027411	1	0.24942	1	0.14824	1	2.8438e-06	0.00167
4q gain	0 (0%)	152	0.19183	1	0.30685	1	0.19029	1	0.13802	1	0.48677	1	0.21598	1	0.36237	1	0.39427	1
5p gain	0 (0%)	104	0.0032198	1	0.19291	1	0.56102	1	0.96897	1	0.8567	1	0.41984	1	0.54239	1	0.058551	1
5q gain	0 (0%)	140	0.88825	1	0.72186	1	0.44168	1	0.86756	1	0.75884	1	0.52997	1	0.70731	1	0.76453	1
6p gain	0 (0%)	134	0.2017	1	0.014553	1	0.015389	1	0.025418	1	0.34497	1	0.27813	1	0.16532	1	0.013284	1
6q gain	0 (0%)	145	0.50453	1	0.076261	1	0.12923	1	0.19605	1	0.16423	1	0.06508	1	0.34747	1	0.018339	1
7p gain	0 (0%)	146	0.9154	1	0.035772	1	0.015031	1	0.097069	1	0.31563	1	0.10097	1	0.0030317	1	0.17161	1
7q gain	0 (0%)	143	0.16289	1	0.084467	1	0.69402	1	0.53642	1	0.48187	1	1	1	0.091828	1	1	1
8p gain	0 (0%)	141	0.3842	1	0.25415	1	0.063988	1	0.059937	1	0.39409	1	1	1	0.15483	1	0.85592	1
8q gain	0 (0%)	126	0.4958	1	0.27171	1	0.24548	1	0.61333	1	0.064915	1	0.2085	1	0.017383	1	0.087836	1
9p gain	0 (0%)	137	0.54336	1	0.043951	1	0.53842	1	0.0068258	1	0.41179	1	0.50876	1	0.6915	1	0.69471	1
9q gain	0 (0%)	138	0.35694	1	0.17778	1	0.30486	1	0.0027163	1	0.10327	1	1	1	0.74757	1	0.7443	1
10p gain	0 (0%)	147	0.13298	1	0.45742	1	0.39987	1	1	1	0.28779	1	1	1	0.62397	1	0.49473	1
10q gain	0 (0%)	152	0.11172	1	0.22763	1	0.42666	1	0.72404	1	0.48677	1	0.21598	1	0.62258	1	0.39427	1
12p gain	0 (0%)	137	0.04478	1	0.010128	1	0.21011	1	0.0016534	0.951	0.25652	1	0.20922	1	0.42546	1	0.44074	1
12q gain	0 (0%)	139	0.017335	1	0.016108	1	0.27741	1	0.013273	1	0.24383	1	1	1	0.64719	1	1	1
13q gain	0 (0%)	147	0.47149	1	0.80213	1	0.88999	1	0.61657	1	0.4187	1	0.36489	1	0.76336	1	0.43966	1
14q gain	0 (0%)	140	0.0097174	1	0.18657	1	0.12965	1	0.28721	1	0.40182	1	0.48748	1	0.09826	1	0.14925	1
15q gain	0 (0%)	137	0.086536	1	0.39506	1	0.8917	1	0.86957	1	0.84391	1	1	1	1	1	0.93284	1
16p gain	0 (0%)	138	0.026525	1	0.30411	1	0.79681	1	0.36058	1	0.39439	1	0.060869	1	0.46198	1	0.18459	1
16q gain	0 (0%)	145	0.84692	1	0.43748	1	0.5699	1	0.19113	1	0.17924	1	0.24143	1	0.17013	1	0.24064	1
17p gain	0 (0%)	148	0.33662	1	0.30942	1	0.54906	1	0.25014	1	0.42282	1	0.028653	1	0.37248	1	0.038002	1
17q gain	0 (0%)	138	0.039505	1	0.17891	1	0.021068	1	0.0021737	1	0.39439	1	0.020812	1	0.054916	1	0.0043845	1
18p gain	0 (0%)	139	0.44775	1	0.013399	1	0.015482	1	0.099403	1	0.23973	1	0.3451	1	0.10263	1	0.11712	1
18q gain	0 (0%)	147	0.53251	1	1.1818e-05	0.00695	8.9347e-05	0.0524	0.031307	1	0.39129	1	1	1	0.22637	1	0.49473	1
19p gain	0 (0%)	142	0.21945	1	0.024632	1	0.71732	1	0.18665	1	0.43608	1	1	1	0.49674	1	0.84484	1
19q gain	0 (0%)	128	0.17238	1	0.056999	1	0.27265	1	0.11992	1	0.12632	1	0.13751	1	0.012727	1	0.069565	1
20p gain	0 (0%)	118	0.019422	1	0.079199	1	0.33696	1	0.046511	1	0.94629	1	0.18046	1	0.70886	1	0.57851	1
20q gain	0 (0%)	111	0.01496	1	0.014236	1	0.84815	1	0.24716	1	0.77847	1	0.20924	1	0.97014	1	0.35585	1
21q gain	0 (0%)	139	0.79689	1	0.19005	1	0.011582	1	0.70013	1	0.33167	1	0.75823	1	0.24566	1	0.29079	1
22q gain	0 (0%)	143	0.16289	1	0.031005	1	0.0013019	0.751	0.02867	1	0.313	1	1	1	0.29713	1	0.30782	1
Xq gain	0 (0%)	144	0.68185	1	0.90392	1	0.87335	1	0.1603	1	0.17924	1	0.24143	1	0.19066	1	0.53586	1
1q loss	0 (0%)	152	0.27787	1	0.27166	1	0.1862	1	0.72404	1	0.8387	1	1	1	0.78065	1	0.29276	1
2p loss	0 (0%)	151	0.83406	1	0.51733	1	0.56134	1	0.62399	1	0.73606	1	0.55311	1	1	1	0.77504	1
2q loss	0 (0%)	147	0.31401	1	0.016218	1	0.053747	1	0.35143	1	1	1	1	1	0.82523	1	1	1
3p loss	0 (0%)	123	0.021798	1	0.028463	1	0.09804	1	0.00024092	0.141	0.0095308	1	0.00057601	0.335	0.0038118	1	0.0014938	0.86
4p loss	0 (0%)	105	0.0018484	1	0.31476	1	0.24955	1	0.29189	1	0.35085	1	0.21454	1	0.27309	1	0.13505	1
4q loss	0 (0%)	125	0.00067764	0.393	0.038442	1	0.83571	1	0.12229	1	0.62749	1	1	1	0.91899	1	0.65986	1
5p loss	0 (0%)	152	0.37896	1	0.26861	1	0.22271	1	1	1	0.35571	1	1	1	1	1	0.63887	1
5q loss	0 (0%)	133	0.00028015	0.164	0.024284	1	0.21811	1	0.067985	1	0.12371	1	0.012498	1	0.082793	1	0.097671	1
6p loss	0 (0%)	139	0.63895	1	0.010935	1	0.081663	1	0.084426	1	0.77503	1	1	1	0.87242	1	1	1
6q loss	0 (0%)	127	0.33991	1	0.14487	1	0.023432	1	0.52032	1	0.37291	1	0.80541	1	0.39277	1	0.63277	1
7p loss	0 (0%)	149	0.10974	1	0.59418	1	0.19597	1	0.12214	1	0.77912	1	0.36489	1	0.2396	1	0.58709	1
7q loss	0 (0%)	140	0.21464	1	0.020516	1	0.032657	1	0.21182	1	0.10555	1	0.75299	1	0.21048	1	0.024546	1
8p loss	0 (0%)	126	0.68452	1	0.68984	1	0.20336	1	0.56605	1	0.87799	1	1	1	0.71259	1	1	1
8q loss	0 (0%)	148	0.4397	1	0.13963	1	0.27664	1	0.51471	1	0.19964	1	0.025784	1	0.079349	1	0.018272	1
9p loss	0 (0%)	142	0.21945	1	0.7586	1	0.75042	1	0.66539	1	0.97031	1	1	1	0.44297	1	0.41071	1
9q loss	0 (0%)	144	0.16471	1	0.13045	1	0.20958	1	0.31289	1	0.36569	1	0.086442	1	0.57205	1	0.18156	1
10p loss	0 (0%)	130	0.32124	1	0.54259	1	0.16385	1	0.10647	1	0.76472	1	0.60954	1	0.66492	1	0.58404	1
10q loss	0 (0%)	128	0.44497	1	0.74642	1	0.30645	1	0.17083	1	0.47661	1	0.45947	1	0.32992	1	0.28243	1
11p loss	0 (0%)	122	0.0193	1	0.31409	1	0.75372	1	0.19859	1	0.7123	1	0.62706	1	0.51719	1	0.21034	1
11q loss	0 (0%)	119	0.084454	1	0.18187	1	0.19915	1	0.010158	1	0.97901	1	0.64579	1	0.89453	1	0.9301	1
12p loss	0 (0%)	136	0.009832	1	0.3838	1	0.83314	1	0.49378	1	0.5889	1	0.17969	1	0.54228	1	0.12714	1
12q loss	0 (0%)	151	0.066163	1	0.39216	1	0.70991	1	0.35989	1	1	1	1	1	1	1	1	1
13q loss	0 (0%)	128	0.02259	1	0.20801	1	0.23927	1	0.013728	1	0.017727	1	0.14046	1	0.14465	1	0.2074	1
14q loss	0 (0%)	148	0.4397	1	0.11657	1	0.050753	1	0.013887	1	0.19964	1	0.025784	1	0.12688	1	0.076641	1
15q loss	0 (0%)	146	0.11196	1	0.16781	1	0.49596	1	0.22095	1	0.7722	1	0.69665	1	1	1	0.73207	1
16p loss	0 (0%)	146	1	1	0.075563	1	0.050216	1	0.0060316	1	0.30399	1	0.45133	1	0.37879	1	0.18846	1
16q loss	0 (0%)	139	0.56905	1	0.0096431	1	0.013288	1	0.00069305	0.401	0.13428	1	0.013773	1	0.013568	1	0.031293	1
17p loss	0 (0%)	124	0.016824	1	0.91986	1	0.087016	1	0.10558	1	0.020215	1	0.017288	1	0.04549	1	0.037411	1
17q loss	0 (0%)	149	1	1	0.66424	1	0.64106	1	0.076123	1	0.29605	1	0.32129	1	0.26344	1	0.3756	1
18p loss	0 (0%)	138	0.20452	1	0.48741	1	0.041454	1	0.22891	1	0.10032	1	0.081796	1	0.072056	1	0.058486	1
18q loss	0 (0%)	129	0.41719	1	0.047674	1	0.0011134	0.644	0.0048247	1	0.013154	1	0.0066096	1	0.049059	1	0.0040923	1
19p loss	0 (0%)	143	0.44501	1	0.10238	1	0.080569	1	0.43019	1	0.55065	1	0.75245	1	0.29492	1	0.047667	1
19q loss	0 (0%)	149	0.58185	1	0.35254	1	0.60896	1	0.34861	1	0.77912	1	0.36489	1	0.76336	1	0.43966	1
20p loss	0 (0%)	147	0.74054	1	0.20554	1	0.59902	1	0.85667	1	0.77521	1	0.4299	1	0.25769	1	0.43384	1
21q loss	0 (0%)	142	0.0471	1	0.3477	1	0.53062	1	0.10168	1	0.56234	1	1	1	0.74757	1	0.93152	1
22q loss	0 (0%)	138	1	1	0.24868	1	0.21115	1	0.22891	1	0.75884	1	1	1	0.42546	1	0.93284	1
Xq loss	0 (0%)	152	0.77874	1	0.67274	1	0.49579	1	0.39441	1	NA	NA	1	1	NA	NA	NA	NA