Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1q21.3)	0 (0%)	74	0.016308	1	0.56241	1	0.1188	1	0.31855	1	0.42755	1	0.33254	1	0.85396	1	0.10082	1
Amp Peak  2(2p24.3)	0 (0%)	115	0.0056147	1	0.0020623	0.806	0.26338	1	0.16669	1	0.48424	1	0.081946	1	0.45834	1	0.005616	1
Amp Peak  3(2q32.3)	0 (0%)	132	0.00032251	0.131	0.021935	1	0.0086931	1	0.0092825	1	0.49326	1	1	1	0.16057	1	0.18061	1
Amp Peak  4(3q26.2)	0 (0%)	36	3.1998e-08	1.33e-05	0.013894	1	0.0366	1	0.0039153	1	0.015209	1	0.26329	1	0.055912	1	0.0060892	1
Amp Peak  5(3q28)	0 (0%)	36	2.2747e-08	9.46e-06	0.075053	1	0.032598	1	0.0039153	1	0.010758	1	0.37266	1	0.031944	1	0.0033897	1
Amp Peak  6(4q12)	0 (0%)	142	0.87465	1	0.46615	1	0.21056	1	0.0113	1	0.49491	1	0.042816	1	0.41038	1	0.082447	1
Amp Peak  7(6p21.33)	0 (0%)	115	0.044121	1	0.0036297	1	0.017411	1	0.025646	1	0.32571	1	0.3861	1	0.21148	1	0.072393	1
Amp Peak  8(8q24.21)	0 (0%)	91	0.13369	1	0.78876	1	0.95379	1	0.72976	1	0.55427	1	0.69903	1	0.17184	1	0.57017	1
Amp Peak  9(9p24.1)	0 (0%)	122	0.22837	1	0.2966	1	0.44961	1	0.18251	1	0.50231	1	0.47533	1	0.11714	1	0.38624	1
Amp Peak 10(9p24.1)	0 (0%)	120	0.32255	1	0.2537	1	0.61735	1	0.12574	1	0.4789	1	0.35113	1	0.2174	1	0.68747	1
Amp Peak 11(11p13)	0 (0%)	144	0.16471	1	0.13846	1	0.13704	1	0.68005	1	0.85859	1	1	1	0.6192	1	0.62563	1
Amp Peak 12(11q13.3)	0 (0%)	135	0.017946	1	0.050513	1	0.033214	1	0.11888	1	0.65793	1	0.78454	1	0.17817	1	0.31301	1
Amp Peak 13(11q22.1)	0 (0%)	127	3.6351e-06	0.0015	0.0021457	0.837	0.010709	1	0.77641	1	0.071349	1	0.059716	1	0.076589	1	0.10733	1
Amp Peak 14(13q22.1)	0 (0%)	120	0.16876	1	0.47948	1	0.15796	1	0.75692	1	0.15676	1	0.81333	1	0.79218	1	0.064376	1
Amp Peak 15(14q24.1)	0 (0%)	125	0.062345	1	0.088446	1	0.57092	1	0.14006	1	0.75159	1	1	1	0.88479	1	0.66623	1
Amp Peak 16(15q26.1)	0 (0%)	117	0.36538	1	0.76666	1	0.63889	1	0.7655	1	0.28843	1	1	1	0.76926	1	0.36085	1
Amp Peak 17(16p13.13)	0 (0%)	120	0.041017	1	0.091136	1	0.46706	1	0.43482	1	0.91795	1	0.25389	1	0.93184	1	0.43869	1
Amp Peak 18(17q12)	0 (0%)	128	0.054245	1	0.33297	1	0.28263	1	0.37666	1	0.36733	1	0.020181	1	0.16047	1	0.017758	1
Amp Peak 19(17q25.1)	0 (0%)	111	1.834e-05	0.00756	0.25477	1	0.0062208	1	0.16913	1	0.63097	1	0.27563	1	0.18087	1	0.14988	1
Amp Peak 20(19q13.32)	0 (0%)	105	0.0013588	0.538	0.3281	1	0.38671	1	0.30222	1	0.67095	1	0.68111	1	0.60383	1	0.86453	1
Amp Peak 21(20q11.21)	0 (0%)	86	0.00012895	0.0527	0.048442	1	0.18756	1	0.079809	1	0.41983	1	0.56494	1	1	1	0.57925	1
Amp Peak 22(Xq28)	0 (0%)	112	0.15416	1	0.79017	1	0.39216	1	0.47145	1	0.033075	1	0.52132	1	0.018924	1	0.40997	1
Del Peak  1(1p36.23)	0 (0%)	134	0.2017	1	0.072058	1	0.03929	1	0.00032787	0.133	0.11527	1	0.014944	1	0.0082207	1	0.0069892	1
Del Peak  2(2q22.1)	0 (0%)	126	0.61561	1	0.77124	1	0.35595	1	0.45555	1	0.39029	1	0.80458	1	0.50753	1	0.66923	1
Del Peak  3(2q37.1)	0 (0%)	93	0.10181	1	0.0056395	1	0.01758	1	0.21779	1	0.15581	1	0.0052324	1	0.11028	1	0.041995	1
Del Peak  4(3p22.1)	0 (0%)	101	3.6986e-05	0.0152	0.037594	1	0.15375	1	0.0020172	0.795	0.048997	1	0.026889	1	0.11412	1	0.14836	1
Del Peak  5(3p14.2)	0 (0%)	93	3.3448e-08	1.38e-05	0.0075723	1	0.047474	1	0.014714	1	0.0053486	1	0.00295	1	0.075193	1	0.022206	1
Del Peak  6(4q22.1)	0 (0%)	111	2.8754e-05	0.0118	0.023826	1	0.27614	1	0.21679	1	0.7322	1	0.53244	1	0.52428	1	0.40118	1
Del Peak  7(4q35.2)	0 (0%)	98	0.0027765	1	0.0074148	1	0.43066	1	0.04136	1	0.65585	1	0.42725	1	0.25005	1	0.51206	1
Del Peak  8(5q15)	0 (0%)	114	0.00038372	0.155	0.19506	1	0.40363	1	0.51823	1	0.16701	1	0.13252	1	0.70263	1	0.70488	1
Del Peak  9(5q35.2)	0 (0%)	113	0.0032597	1	0.033379	1	0.36122	1	0.54872	1	0.36365	1	0.28412	1	0.79864	1	0.66151	1
Del Peak 10(6p24.2)	0 (0%)	132	0.47143	1	0.11602	1	0.2805	1	0.19228	1	0.76756	1	1	1	0.76842	1	0.9016	1
Del Peak 11(6q26)	0 (0%)	100	0.1465	1	0.49557	1	0.27997	1	0.63025	1	0.94237	1	1	1	0.94658	1	0.94644	1
Del Peak 12(7q34)	0 (0%)	121	0.1718	1	0.69618	1	0.3852	1	0.64678	1	0.20407	1	0.64186	1	0.43533	1	0.38924	1
Del Peak 13(10q23.31)	0 (0%)	112	0.4769	1	0.47483	1	0.076385	1	0.11269	1	0.9487	1	1	1	0.88578	1	0.8091	1
Del Peak 14(11p15.5)	0 (0%)	106	0.06812	1	0.13273	1	0.39981	1	0.035691	1	0.18597	1	0.14318	1	0.082805	1	0.23783	1
Del Peak 15(11q25)	0 (0%)	67	0.00049396	0.199	0.22863	1	0.074443	1	0.0063451	1	0.15913	1	0.17028	1	0.027057	1	0.58372	1
Del Peak 16(13q12.12)	0 (0%)	102	0.0029517	1	0.026847	1	0.84417	1	0.54602	1	0.24014	1	0.073411	1	0.03757	1	0.404	1
Del Peak 17(13q14.2)	0 (0%)	98	0.001108	0.441	0.042848	1	0.18434	1	0.043258	1	0.077399	1	0.16831	1	0.012272	1	0.32441	1
Del Peak 18(14q32.31)	0 (0%)	127	0.1583	1	0.20147	1	0.0075723	1	0.00029855	0.122	0.012361	1	0.14243	1	0.0042928	1	0.013546	1
Del Peak 19(15q15.1)	0 (0%)	121	0.0020363	0.8	0.13017	1	0.70665	1	0.56464	1	0.095865	1	1	1	0.056864	1	0.024084	1
Del Peak 20(16q11.2)	0 (0%)	127	0.70039	1	0.010242	1	0.087457	1	0.11662	1	0.06543	1	0.003018	1	0.0020368	0.8	0.010022	1
Del Peak 21(16q23.1)	0 (0%)	124	0.76887	1	0.00052369	0.211	0.024445	1	0.00012898	0.0527	0.012198	1	0.00084947	0.339	0.00073074	0.292	0.0023526	0.915
Del Peak 22(17p12)	0 (0%)	108	0.0055571	1	0.8931	1	0.095849	1	0.47787	1	0.070189	1	0.15313	1	0.24004	1	0.4664	1
Del Peak 23(17q25.3)	0 (0%)	128	0.11404	1	0.0039226	1	0.00065791	0.264	0.0029521	1	0.01089	1	0.020371	1	0.0045136	1	0.0088673	1
Del Peak 24(19p13.3)	0 (0%)	108	0.0026806	1	0.010364	1	0.0055789	1	0.25732	1	0.2347	1	0.20924	1	0.18671	1	0.0017509	0.692
Del Peak 25(19q13.33)	0 (0%)	134	0.046977	1	0.15727	1	0.73837	1	0.65893	1	0.7877	1	0.24615	1	0.75045	1	0.44738	1
Del Peak 26(20p12.1)	0 (0%)	134	0.83604	1	0.68871	1	0.22647	1	0.32003	1	0.55229	1	1	1	0.1799	1	0.64751	1
Del Peak 27(21q21.1)	0 (0%)	125	0.062345	1	0.036066	1	0.8852	1	0.26143	1	0.96771	1	1	1	0.55767	1	0.51903	1
Del Peak 28(22q13.32)	0 (0%)	111	0.051292	1	0.17598	1	0.17191	1	0.15288	1	0.50566	1	0.28684	1	0.28846	1	0.28453	1
Del Peak 29(Xp11.3)	0 (0%)	112	0.011596	1	0.085212	1	0.18917	1	0.42005	1	0.0011131	0.442	0.20627	1	0.039059	1	0.12076	1
Del Peak 30(Xq21.33)	0 (0%)	120	0.021482	1	0.014617	1	0.11314	1	0.062648	1	0.021994	1	0.16171	1	0.30859	1	0.059506	1