Clinical Features Time to Death AGE PRIMARY.SITE.OF.DISEASE NEOPLASM.DISEASESTAGE PATHOLOGY.T.STAGE PATHOLOGY.N.STAGE PATHOLOGY.M.STAGE GENDER HISTOLOGICAL.TYPE RADIATIONS.RADIATION.REGIMENINDICATION COMPLETENESS.OF.RESECTION NUMBER.OF.LYMPH.NODES nCNV (%) nWild-Type logrank test_P logrank test_Q t-test_P t-test_Q Fisher's exact test_P Fisher's exact test_Q Chi-square test_P Chi-square test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Chi-square test_P Chi-square test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q t-test_P t-test_Q 1P GAIN MUTATION ANALYSIS 41 (7%) 542 0.88851 1 0.53541 1 0.85499 1 0.44102 1 0.80088 1 0.51845 1 0.64279 1 0.41707 1 0.087521 1 0.48367 1 0.10226 1 0.13319 1 1Q GAIN MUTATION ANALYSIS 111 (19%) 472 0.7799 1 0.43647 1 0.34205 1 0.14008 1 0.075389 1 0.065218 1 0.064282 1 0.39763 1 0.26864 1 0.68295 1 0.26536 1 0.0057839 1 2P GAIN MUTATION ANALYSIS 104 (18%) 479 0.65211 1 0.54729 1 0.27787 1 0.14822 1 0.41934 1 0.095976 1 0.40725 1 0.44798 1 0.017442 1 0.66552 1 0.036577 1 0.65654 1 2Q GAIN MUTATION ANALYSIS 101 (17%) 482 0.26535 1 0.21968 1 0.14085 1 0.12185 1 0.50145 1 0.040514 1 0.59296 1 0.38084 1 0.012342 1 0.65841 1 0.3841 1 0.52026 1 3P GAIN MUTATION ANALYSIS 65 (11%) 518 0.52603 1 0.13999 1 0.036775 1 0.027234 1 1 1 0.21888 1 0.0012122 1 0.50976 1 0.079695 1 1 1 0.81743 1 0.18705 1 3Q GAIN MUTATION ANALYSIS 89 (15%) 494 0.11343 1 0.21352 1 0.027186 1 0.039172 1 0.90178 1 0.035851 1 0.00030065 0.282 0.72945 1 0.028637 1 0.63302 1 0.4439 1 0.16321 1 4P GAIN MUTATION ANALYSIS 14 (2%) 569 0.76051 1 0.84676 1 0.027796 1 0.41151 1 0.51192 1 0.49396 1 0.20573 1 0.58926 1 0.071906 1 1 1 1 1 0.020246 1 4Q GAIN MUTATION ANALYSIS 15 (3%) 568 0.24587 1 0.47467 1 1 1 0.93021 1 0.85933 1 0.36245 1 0.55526 1 0.79437 1 0.75539 1 1 1 0.42156 1 0.62295 1 5P GAIN MUTATION ANALYSIS 93 (16%) 490 0.8244 1 0.14801 1 0.25651 1 0.22832 1 0.72844 1 0.03064 1 0.55902 1 0.90976 1 0.14906 1 0.64085 1 0.11866 1 0.18045 1 5Q GAIN MUTATION ANALYSIS 59 (10%) 524 0.89271 1 0.95797 1 0.16532 1 0.72414 1 0.53152 1 0.35474 1 0.91123 1 0.58266 1 0.15075 1 1 1 0.15287 1 0.81708 1 6P GAIN MUTATION ANALYSIS 117 (20%) 466 0.37365 1 0.72174 1 0.16098 1 0.24251 1 0.5274 1 0.000986 0.906 0.43207 1 0.40799 1 0.11747 1 0.00028283 0.266 0.27462 1 0.023713 1 6Q GAIN MUTATION ANALYSIS 105 (18%) 478 0.61015 1 0.723 1 0.27347 1 0.10451 1 0.75244 1 0.0058245 1 0.17043 1 0.59044 1 0.064324 1 0.00013553 0.128 0.33306 1 0.095482 1 7P GAIN MUTATION ANALYSIS 333 (57%) 250 0.48648 1 0.39035 1 0.18898 1 0.00021982 0.207 0.84312 1 2.3302e-05 0.0221 0.023396 1 0.73744 1 0.00062395 0.58 0.31267 1 0.25853 1 0.014632 1 7Q GAIN MUTATION ANALYSIS 299 (51%) 284 0.38422 1 0.35061 1 0.35167 1 0.00086282 0.796 0.61606 1 0.0011837 1 0.020761 1 0.73967 1 0.0016987 1 0.50573 1 0.40282 1 0.050729 1 8P GAIN MUTATION ANALYSIS 164 (28%) 419 0.32219 1 0.57614 1 0.35236 1 0.48726 1 0.80739 1 0.33509 1 0.69694 1 0.78179 1 0.55135 1 0.27733 1 0.13554 1 0.30645 1 8Q GAIN MUTATION ANALYSIS 294 (50%) 289 0.44986 1 0.26772 1 0.40377 1 0.40317 1 0.2949 1 0.2549 1 0.40993 1 1 1 0.027443 1 0.037683 1 0.14887 1 0.56916 1 9P GAIN MUTATION ANALYSIS 113 (19%) 470 0.15041 1 0.73978 1 0.045319 1 0.013256 1 0.69906 1 0.088873 1 0.80535 1 1 1 0.017217 1 1 1 0.26576 1 0.13043 1 9Q GAIN MUTATION ANALYSIS 95 (16%) 488 0.26902 1 0.80667 1 0.2575 1 0.02433 1 0.56876 1 0.25213 1 0.97448 1 0.57413 1 0.092721 1 1 1 0.56729 1 0.29362 1 10P GAIN MUTATION ANALYSIS 43 (7%) 540 0.12881 1 0.59421 1 0.86038 1 0.71577 1 0.21287 1 0.055078 1 0.48309 1 0.75278 1 0.88064 1 0.50069 1 0.57107 1 0.23401 1 10Q GAIN MUTATION ANALYSIS 24 (4%) 559 0.6849 1 0.037905 1 1 1 0.34925 1 0.5129 1 0.0089181 1 0.71262 1 0.83504 1 0.91504 1 0.31683 1 0.66028 1 0.071585 1 11P GAIN MUTATION ANALYSIS 76 (13%) 507 0.92863 1 0.010531 1 0.051488 1 0.50122 1 0.26801 1 0.44294 1 0.18392 1 1 1 0.00029362 0.276 0.10005 1 0.39921 1 0.35045 1 11Q GAIN MUTATION ANALYSIS 72 (12%) 511 0.75603 1 0.00064573 0.599 0.25902 1 0.5768 1 0.72377 1 0.57104 1 0.040415 1 0.89996 1 0.0013445 1 0.30744 1 0.46587 1 0.69823 1 12P GAIN MUTATION ANALYSIS 122 (21%) 461 0.48886 1 0.041386 1 1 1 0.2014 1 0.31687 1 0.13289 1 0.20176 1 1 1 0.767 1 0.40466 1 0.78561 1 0.68164 1 12Q GAIN MUTATION ANALYSIS 103 (18%) 480 0.84658 1 0.0074679 1 0.088143 1 0.048359 1 0.44166 1 0.0097677 1 0.052832 1 0.82782 1 0.22601 1 0.37254 1 0.66999 1 0.0030843 1 13Q GAIN MUTATION ANALYSIS 349 (60%) 234 0.16376 1 0.2385 1 0.057796 1 0.008221 1 0.74464 1 0.0004097 0.382 0.047347 1 0.27163 1 1.3242e-08 1.27e-05 0.74672 1 0.087551 1 0.67898 1 14Q GAIN MUTATION ANALYSIS 43 (7%) 540 0.59909 1 0.92977 1 0.37742 1 0.79545 1 0.92635 1 0.59696 1 0.00023141 0.218 0.63428 1 0.37396 1 0.13747 1 0.59658 1 0.2202 1 15Q GAIN MUTATION ANALYSIS 17 (3%) 566 0.81929 1 0.14755 1 0.78919 1 0.50164 1 0.046911 1 0.49489 1 0.39778 1 0.013227 1 0.12736 1 0.23525 1 0.18829 1 0.35532 1 16P GAIN MUTATION ANALYSIS 138 (24%) 445 0.68554 1 0.18877 1 1 1 0.025171 1 0.9946 1 0.0020426 1 0.26047 1 0.55899 1 0.0035766 1 0.44811 1 0.7415 1 0.21223 1 16Q GAIN MUTATION ANALYSIS 134 (23%) 449 0.99118 1 0.097638 1 0.74092 1 0.0088368 1 0.99441 1 0.00089593 0.825 0.23162 1 0.4897 1 0.0050451 1 0.43617 1 0.72813 1 0.45289 1 17P GAIN MUTATION ANALYSIS 30 (5%) 553 0.1262 1 0.68311 1 0.8337 1 0.76582 1 0.58529 1 0.78886 1 0.17865 1 1 1 0.79349 1 1 1 0.83623 1 0.59533 1 17Q GAIN MUTATION ANALYSIS 101 (17%) 482 0.33912 1 0.23602 1 0.90287 1 0.1854 1 0.80197 1 0.31911 1 0.012298 1 0.7425 1 0.50809 1 1 1 0.27408 1 0.31369 1 18P GAIN MUTATION ANALYSIS 31 (5%) 552 0.98391 1 0.7398 1 0.83751 1 0.00082023 0.758 0.80176 1 0.051845 1 0.00085111 0.786 0.4605 1 0.023782 1 0.39058 1 1 1 0.069194 1 18Q GAIN MUTATION ANALYSIS 19 (3%) 564 0.39836 1 0.25225 1 1 1 0.17218 1 0.35391 1 0.083916 1 0.6922 1 0.2441 1 0.051245 1 0.2594 1 0.61255 1 0.17933 1 19P GAIN MUTATION ANALYSIS 91 (16%) 492 0.3526 1 0.82998 1 0.61031 1 0.76657 1 0.95927 1 0.1191 1 0.19149 1 0.17097 1 0.082792 1 1 1 0.33696 1 0.41512 1 19Q GAIN MUTATION ANALYSIS 100 (17%) 483 0.22398 1 0.96755 1 0.71265 1 0.70758 1 0.72128 1 0.20261 1 0.11218 1 0.5092 1 0.29422 1 1 1 0.47123 1 0.55211 1 20P GAIN MUTATION ANALYSIS 337 (58%) 246 0.23714 1 0.93128 1 0.0047246 1 0.00034927 0.327 0.69895 1 0.033898 1 0.0018775 1 0.064912 1 3.0039e-06 0.00286 0.31482 1 0.042795 1 0.34437 1 20Q GAIN MUTATION ANALYSIS 441 (76%) 142 0.4844 1 0.41682 1 4.065e-06 0.00386 0.00054867 0.51 0.22398 1 0.0037808 1 0.0027582 1 0.33387 1 2.2345e-12 2.14e-09 0.69519 1 0.023314 1 0.35045 1 21Q GAIN MUTATION ANALYSIS 31 (5%) 552 0.20101 1 0.036216 1 0.5284 1 0.95002 1 0.23839 1 0.68578 1 0.8513 1 0.85453 1 0.67624 1 1 1 0.75624 1 0.55879 1 22Q GAIN MUTATION ANALYSIS 22 (4%) 561 0.97704 1 0.34145 1 0.084286 1 0.89208 1 0.29726 1 0.39685 1 0.35903 1 1 1 0.10905 1 0.29435 1 0.31508 1 0.26278 1 XQ GAIN MUTATION ANALYSIS 104 (18%) 479 0.71536 1 0.17529 1 0.54301 1 0.1628 1 0.65577 1 0.42554 1 0.17584 1 0.32919 1 0.13435 1 1 1 0.90561 1 0.81249 1 1P LOSS MUTATION ANALYSIS 125 (21%) 458 0.14732 1 0.88658 1 0.14173 1 0.040203 1 0.76281 1 0.0022074 1 0.0048295 1 0.76163 1 0.029534 1 0.41185 1 0.34086 1 0.0091283 1 1Q LOSS MUTATION ANALYSIS 67 (11%) 516 0.2151 1 0.66635 1 0.30946 1 0.40497 1 0.73949 1 0.019328 1 0.040417 1 0.12047 1 0.30791 1 0.07342 1 0.37042 1 0.21321 1 2P LOSS MUTATION ANALYSIS 17 (3%) 566 0.80754 1 0.10359 1 0.0012494 1 0.76253 1 0.84995 1 0.89166 1 0.83956 1 0.80652 1 0.01373 1 0.23525 1 1 1 0.95648 1 2Q LOSS MUTATION ANALYSIS 14 (2%) 569 0.36131 1 0.41627 1 0.069424 1 0.51593 1 0.80414 1 1 1 0.6269 1 1 1 0.30552 1 0.19772 1 1 1 0.90719 1 3P LOSS MUTATION ANALYSIS 61 (10%) 522 0.066826 1 0.96213 1 0.54171 1 0.033908 1 0.022451 1 0.054984 1 0.0016995 1 0.41704 1 0.088571 1 0.24069 1 0.10222 1 0.10175 1 3Q LOSS MUTATION ANALYSIS 38 (7%) 545 0.49101 1 0.45252 1 0.84909 1 0.083349 1 0.087726 1 0.56081 1 0.18491 1 0.24324 1 0.0081225 1 0.11146 1 0.29869 1 0.41684 1 4P LOSS MUTATION ANALYSIS 181 (31%) 402 0.25641 1 0.69688 1 0.19027 1 0.013694 1 0.72047 1 0.0013677 1 0.0050648 1 0.5301 1 0.018664 1 0.00051048 0.475 0.12336 1 0.0096172 1 4Q LOSS MUTATION ANALYSIS 175 (30%) 408 0.57243 1 0.98244 1 0.0057243 1 0.096709 1 0.58655 1 0.0069343 1 0.24907 1 0.58808 1 0.0051297 1 0.0003926 0.367 0.85151 1 0.028417 1 5P LOSS MUTATION ANALYSIS 75 (13%) 508 0.53275 1 0.22574 1 0.26683 1 0.10784 1 0.80993 1 0.0063747 1 0.41451 1 0.62048 1 0.32282 1 0.019251 1 0.26976 1 0.038614 1 5Q LOSS MUTATION ANALYSIS 109 (19%) 474 0.18319 1 0.42741 1 0.042344 1 0.089588 1 0.5441 1 0.0033607 1 0.12179 1 0.91561 1 0.04665 1 0.0019473 1 0.48682 1 0.025616 1 6P LOSS MUTATION ANALYSIS 46 (8%) 537 0.1176 1 0.28823 1 0.7297 1 0.80444 1 0.21235 1 0.35238 1 0.61396 1 0.53913 1 0.15079 1 0.52529 1 0.073397 1 0.20827 1 6Q LOSS MUTATION ANALYSIS 68 (12%) 515 0.12421 1 0.9737 1 0.38404 1 0.080713 1 0.10872 1 0.17819 1 0.043006 1 0.30064 1 0.044195 1 1 1 0.194 1 0.061964 1 7P LOSS MUTATION ANALYSIS 4 (1%) 579 0.65414 1 0.25739 1 0.065106 1 0.93184 1 1 1 0.38525 1 0.87368 1 1 1 0.053294 1 1 1 1 1 2.9053e-25 2.79e-22 7Q LOSS MUTATION ANALYSIS 5 (1%) 578 0.54549 1 0.76923 1 0.13022 1 0.78934 1 0.42195 1 0.83185 1 0.82023 1 0.6668 1 0.094861 1 1 1 1 1 2.1657e-06 0.00206 8P LOSS MUTATION ANALYSIS 203 (35%) 380 0.86672 1 0.81019 1 0.0012375 1 0.064052 1 0.2342 1 0.00075245 0.697 0.096501 1 0.2973 1 0.00094202 0.867 0.28834 1 0.24456 1 0.0012436 1 8Q LOSS MUTATION ANALYSIS 36 (6%) 547 0.91629 1 0.96758 1 0.44176 1 0.21404 1 0.47972 1 0.14424 1 0.14993 1 0.057912 1 0.55203 1 1 1 0.68312 1 0.11375 1 9P LOSS MUTATION ANALYSIS 70 (12%) 513 0.037081 1 0.32281 1 0.56677 1 0.86036 1 0.11155 1 0.50795 1 0.25775 1 0.30686 1 0.39495 1 1 1 0.03725 1 0.34789 1 9Q LOSS MUTATION ANALYSIS 69 (12%) 514 0.021139 1 0.03165 1 0.66314 1 0.70235 1 0.1186 1 0.46069 1 0.20973 1 0.70001 1 0.21689 1 1 1 0.03725 1 0.80895 1 10P LOSS MUTATION ANALYSIS 93 (16%) 490 0.23073 1 0.0057014 1 0.097775 1 0.26202 1 0.94944 1 0.01321 1 0.23769 1 0.82159 1 0.025253 1 0.00079601 0.736 1 1 0.16091 1 10Q LOSS MUTATION ANALYSIS 100 (17%) 483 0.19819 1 0.0086409 1 0.0353 1 0.58836 1 1 1 0.10639 1 0.54655 1 0.82589 1 0.017081 1 0.001201 1 0.97058 1 0.3407 1 11P LOSS MUTATION ANALYSIS 72 (12%) 511 0.77208 1 0.37159 1 0.32284 1 0.46562 1 0.32016 1 0.01045 1 0.03319 1 0.80106 1 0.21732 1 0.087727 1 0.70243 1 0.017449 1 11Q LOSS MUTATION ANALYSIS 85 (15%) 498 0.44895 1 0.39676 1 0.34746 1 0.65996 1 0.40262 1 0.032237 1 0.40704 1 0.72507 1 0.11727 1 0.029733 1 0.94501 1 0.116 1 12P LOSS MUTATION ANALYSIS 59 (10%) 524 0.34928 1 0.71207 1 0.064102 1 0.73963 1 0.25262 1 0.055923 1 0.30298 1 0.49287 1 0.0030683 1 0.22872 1 0.94119 1 0.65991 1 12Q LOSS MUTATION ANALYSIS 61 (10%) 522 0.56046 1 0.96795 1 0.17149 1 0.63273 1 0.41307 1 0.1027 1 0.17566 1 0.68479 1 0.060697 1 0.24069 1 1 1 0.59963 1 13Q LOSS MUTATION ANALYSIS 19 (3%) 564 0.33219 1 0.96032 1 0.18854 1 0.60781 1 0.6625 1 0.012117 1 0.64518 1 1 1 0.024154 1 1 1 1 1 0.080302 1 14Q LOSS MUTATION ANALYSIS 187 (32%) 396 0.14626 1 0.64612 1 0.028186 1 0.44704 1 0.46385 1 0.014008 1 0.10183 1 0.53455 1 1.9836e-06 0.00189 0.7256 1 0.90588 1 0.89389 1 15Q LOSS MUTATION ANALYSIS 209 (36%) 374 0.44496 1 0.69287 1 0.051571 1 0.044868 1 0.26275 1 0.014331 1 0.21061 1 0.54472 1 0.0045935 1 0.012359 1 0.37721 1 0.045614 1 16P LOSS MUTATION ANALYSIS 31 (5%) 552 0.071272 1 0.85512 1 0.83751 1 0.12623 1 0.48175 1 0.82089 1 0.94156 1 0.19797 1 0.40486 1 1 1 0.56528 1 0.70594 1 16Q LOSS MUTATION ANALYSIS 36 (6%) 547 0.23681 1 0.76111 1 0.12411 1 0.48827 1 0.87638 1 0.32068 1 0.92254 1 0.73082 1 0.34059 1 0.43884 1 0.92903 1 0.16986 1 17P LOSS MUTATION ANALYSIS 319 (55%) 264 0.29485 1 0.1414 1 0.019785 1 0.0092019 1 0.58137 1 0.0017874 1 0.023527 1 0.27855 1 3.0071e-06 0.00286 0.19386 1 0.072557 1 0.0069004 1 17Q LOSS MUTATION ANALYSIS 83 (14%) 500 0.70134 1 0.6454 1 0.35243 1 0.092835 1 0.27089 1 0.026528 1 0.28239 1 0.34183 1 0.65389 1 0.6228 1 0.7997 1 0.074893 1 18P LOSS MUTATION ANALYSIS 357 (61%) 226 0.74143 1 0.17117 1 1.5916e-06 0.00152 0.00033746 0.316 0.85124 1 0.002101 1 0.00063689 0.591 0.4955 1 9.8129e-16 9.4e-13 0.16401 1 0.023617 1 0.098655 1 18Q LOSS MUTATION ANALYSIS 385 (66%) 198 0.75502 1 0.11569 1 1.4669e-08 1.4e-05 6.9101e-05 0.0654 0.33693 1 0.00015026 0.142 0.00028722 0.27 0.59904 1 4.3944e-16 4.21e-13 0.28538 1 0.024497 1 0.10776 1 19P LOSS MUTATION ANALYSIS 63 (11%) 520 0.25677 1 0.5949 1 0.023094 1 0.00037723 0.353 0.89894 1 0.0014274 1 0.0051926 1 0.6887 1 0.073154 1 0.25272 1 0.48708 1 0.0038216 1 19Q LOSS MUTATION ANALYSIS 52 (9%) 531 0.66447 1 0.66508 1 0.069237 1 0.00042593 0.397 0.95878 1 0.0034628 1 0.021033 1 0.30782 1 0.18878 1 0.18763 1 0.79367 1 0.010424 1 20P LOSS MUTATION ANALYSIS 62 (11%) 521 0.80449 1 0.43559 1 0.36279 1 0.84252 1 0.81693 1 0.71499 1 0.80761 1 0.59075 1 0.33509 1 0.60752 1 0.60854 1 0.88385 1 20Q LOSS MUTATION ANALYSIS 6 (1%) 577 0.09272 1 0.020349 1 0.19545 1 0.85688 1 0.51116 1 0.38964 1 0.86327 1 0.69101 1 0.41458 1 1 1 1 1 0.96987 1 21Q LOSS MUTATION ANALYSIS 178 (31%) 405 0.67611 1 0.55449 1 0.0045908 1 0.34575 1 0.91195 1 0.0089774 1 0.71398 1 0.78741 1 0.0021696 1 0.46604 1 0.78278 1 0.0013589 1 22Q LOSS MUTATION ANALYSIS 186 (32%) 397 0.068893 1 0.7114 1 0.61862 1 0.010875 1 0.31161 1 2.9284e-05 0.0277 0.021662 1 1 1 0.024032 1 0.4762 1 0.60054 1 0.021616 1 XQ LOSS MUTATION ANALYSIS 76 (13%) 507 0.61477 1 0.31933 1 0.16483 1 0.16991 1 0.90458 1 0.19832 1 0.0315 1 1 1 0.1496 1 1 1 0.22899 1 0.25838 1