Clinical Features Time to Death AGE PRIMARY.SITE.OF.DISEASE NEOPLASM.DISEASESTAGE PATHOLOGY.T.STAGE PATHOLOGY.N.STAGE PATHOLOGY.M.STAGE GENDER HISTOLOGICAL.TYPE RADIATIONS.RADIATION.REGIMENINDICATION COMPLETENESS.OF.RESECTION NUMBER.OF.LYMPH.NODES nCNV (%) nWild-Type logrank test_P logrank test_Q t-test_P t-test_Q Fisher's exact test_P Fisher's exact test_Q Chi-square test_P Chi-square test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Chi-square test_P Chi-square test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q t-test_P t-test_Q AMP PEAK 1(1Q31.1) MUTATION ANALYSIS 136 (23%) 447 0.61474 1 0.31222 1 0.027402 1 0.42842 1 0.40477 1 0.086334 1 0.20304 1 0.20166 1 0.086289 1 0.035857 1 0.68 1 0.016893 1 AMP PEAK 2(2Q33.1) MUTATION ANALYSIS 125 (21%) 458 0.065613 1 0.35313 1 0.031806 1 0.018871 1 0.71771 1 0.0027692 1 0.34437 1 0.84013 1 0.0051012 1 0.10422 1 0.49505 1 0.031919 1 AMP PEAK 3(5P12) MUTATION ANALYSIS 108 (19%) 475 0.089526 1 0.35023 1 0.15116 1 0.27207 1 0.32282 1 0.079715 1 0.35167 1 0.74856 1 0.051305 1 0.37845 1 0.028922 1 0.081042 1 AMP PEAK 4(5Q22.3) MUTATION ANALYSIS 60 (10%) 523 0.35389 1 0.95658 1 0.44707 1 0.6202 1 0.91514 1 0.2717 1 0.041264 1 1 1 0.30018 1 1 1 0.069798 1 0.54626 1 AMP PEAK 5(6P21.1) MUTATION ANALYSIS 148 (25%) 435 0.95368 1 0.61743 1 0.031833 1 0.026924 1 0.21894 1 9.3025e-05 0.0813 0.14437 1 0.15381 1 0.0019462 1 0.001357 1 0.14362 1 0.0031131 1 AMP PEAK 6(7P21.3) MUTATION ANALYSIS 343 (59%) 240 0.76505 1 0.086731 1 0.037218 1 0.00035925 0.31 0.93659 1 8.7547e-06 0.0078 0.028353 1 0.80024 1 0.00074337 0.631 0.088895 1 0.26624 1 0.030677 1 AMP PEAK 7(8P11.23) MUTATION ANALYSIS 199 (34%) 384 0.27858 1 0.89012 1 0.62527 1 0.21019 1 0.40973 1 0.61603 1 0.35549 1 0.48437 1 0.20747 1 0.49908 1 0.15542 1 0.75783 1 AMP PEAK 8(8P11.21) MUTATION ANALYSIS 241 (41%) 342 0.74093 1 0.7431 1 0.63696 1 0.12596 1 0.50728 1 0.35933 1 0.31594 1 0.20681 1 0.10336 1 0.74244 1 0.044285 1 0.53484 1 AMP PEAK 9(8Q12.1) MUTATION ANALYSIS 312 (54%) 271 0.79077 1 0.2887 1 0.26265 1 0.11928 1 0.16597 1 0.16468 1 0.02988 1 0.61741 1 0.0072555 1 0.041775 1 0.10006 1 0.046537 1 AMP PEAK 10(8Q24.21) MUTATION ANALYSIS 349 (60%) 234 0.49385 1 0.3307 1 0.086836 1 0.18783 1 0.14697 1 0.23506 1 0.072587 1 0.3523 1 0.0081353 1 0.09258 1 0.2232 1 0.10191 1 AMP PEAK 11(10Q22.3) MUTATION ANALYSIS 36 (6%) 547 0.87108 1 0.38524 1 1 1 0.57401 1 0.27758 1 0.016226 1 0.90442 1 0.60799 1 0.92464 1 0.43884 1 0.92342 1 0.097127 1 AMP PEAK 12(11P15.5) MUTATION ANALYSIS 130 (22%) 453 0.71489 1 0.066819 1 0.14443 1 0.98043 1 0.27319 1 0.65636 1 0.33756 1 0.61824 1 0.0011824 0.994 0.11737 1 0.89127 1 0.4625 1 AMP PEAK 13(12P13.32) MUTATION ANALYSIS 144 (25%) 439 0.27397 1 0.04485 1 0.91388 1 0.16481 1 0.33114 1 0.10981 1 0.12402 1 0.63095 1 0.45686 1 0.6964 1 0.77831 1 0.44957 1 AMP PEAK 14(13Q12.13) MUTATION ANALYSIS 377 (65%) 206 0.2044 1 0.24617 1 0.0025401 1 0.00033414 0.289 0.77952 1 3.706e-05 0.0326 0.009228 1 0.54408 1 5.0305e-10 4.55e-07 1 1 0.049784 1 0.047431 1 AMP PEAK 15(13Q12.2) MUTATION ANALYSIS 372 (64%) 211 0.16602 1 0.18547 1 0.0019697 1 0.00087934 0.744 0.77772 1 7.7331e-05 0.0677 0.021367 1 0.38783 1 1.1587e-09 1.05e-06 1 1 0.090072 1 0.048913 1 AMP PEAK 16(13Q22.1) MUTATION ANALYSIS 377 (65%) 206 0.14311 1 0.35842 1 0.025506 1 0.0071407 1 0.89897 1 0.00011459 0.0999 0.02264 1 0.14056 1 1.4275e-08 1.29e-05 0.50356 1 0.27048 1 0.22816 1 AMP PEAK 17(15Q26.1) MUTATION ANALYSIS 43 (7%) 540 0.26533 1 0.56011 1 0.28678 1 0.15895 1 0.11809 1 0.0022138 1 0.61533 1 0.11422 1 0.39521 1 0.13747 1 0.57107 1 0.049379 1 AMP PEAK 18(16P11.2) MUTATION ANALYSIS 162 (28%) 421 0.90259 1 0.33948 1 0.91729 1 0.0019672 1 0.78774 1 6.8884e-05 0.0604 0.16083 1 0.64305 1 0.0022009 1 0.71373 1 0.2456 1 0.020415 1 AMP PEAK 19(17Q12) MUTATION ANALYSIS 145 (25%) 438 0.56511 1 0.35761 1 0.5196 1 0.20298 1 0.50255 1 0.19394 1 0.010643 1 0.084236 1 0.42888 1 0.46308 1 0.061548 1 0.39513 1 AMP PEAK 20(17Q24.1) MUTATION ANALYSIS 129 (22%) 454 0.080129 1 0.23663 1 0.9107 1 0.58559 1 0.79716 1 0.88864 1 0.047889 1 0.68942 1 0.083366 1 0.69151 1 0.18691 1 0.65127 1 AMP PEAK 21(19P13.2) MUTATION ANALYSIS 99 (17%) 484 0.34251 1 0.59587 1 0.26554 1 0.61383 1 0.50785 1 0.039075 1 0.19655 1 0.15046 1 0.047447 1 1 1 0.12105 1 0.93805 1 AMP PEAK 22(19Q12) MUTATION ANALYSIS 123 (21%) 460 0.56792 1 0.88917 1 0.25529 1 0.83487 1 0.67613 1 0.10117 1 0.12005 1 0.18564 1 0.025467 1 0.69247 1 0.46029 1 0.41473 1 AMP PEAK 23(20P11.23) MUTATION ANALYSIS 303 (52%) 280 0.96962 1 0.78775 1 0.015291 1 0.0035631 1 0.97576 1 0.096544 1 0.0010999 0.927 0.046046 1 0.00049262 0.423 0.17938 1 0.28815 1 0.47497 1 AMP PEAK 24(20Q11.21) MUTATION ANALYSIS 445 (76%) 138 0.44799 1 0.99442 1 9.6262e-06 0.00857 0.00076388 0.647 0.29044 1 0.0016989 1 0.0053824 1 0.2424 1 2.5744e-12 2.33e-09 0.69327 1 0.050817 1 0.44499 1 AMP PEAK 25(20Q12) MUTATION ANALYSIS 447 (77%) 136 0.41549 1 0.89685 1 5.0162e-06 0.00448 0.00020737 0.18 0.38298 1 0.0012643 1 0.0012867 1 0.24062 1 1.5724e-13 1.43e-10 0.69256 1 0.051653 1 0.49935 1 AMP PEAK 26(20Q13.32) MUTATION ANALYSIS 450 (77%) 133 0.52055 1 0.82849 1 2.2714e-05 0.0201 0.0007629 0.647 0.35877 1 0.0020264 1 0.0042246 1 0.42864 1 2.7123e-12 2.46e-09 0.69184 1 0.051551 1 0.3316 1 AMP PEAK 27(XQ28) MUTATION ANALYSIS 124 (21%) 459 0.3426 1 0.23299 1 0.42608 1 0.10076 1 0.46027 1 0.034502 1 0.26121 1 0.68495 1 0.019569 1 0.69219 1 0.28126 1 0.33287 1 DEL PEAK 1(1P36.11) MUTATION ANALYSIS 223 (38%) 360 0.060487 1 0.1674 1 0.10382 1 0.033609 1 0.2586 1 0.0019392 1 0.00070551 0.6 0.39321 1 0.005073 1 0.73765 1 0.10758 1 0.00065513 0.558 DEL PEAK 2(1P33) MUTATION ANALYSIS 156 (27%) 427 0.036366 1 0.9364 1 0.3434 1 0.030197 1 0.22951 1 0.010592 1 0.0098087 1 1 1 0.07251 1 0.70676 1 0.3106 1 0.01625 1 DEL PEAK 3(1P13.2) MUTATION ANALYSIS 158 (27%) 425 0.19265 1 0.67545 1 0.20857 1 0.0041783 1 0.13583 1 0.0020845 1 0.0014957 1 0.70925 1 0.11806 1 0.26242 1 0.27408 1 0.0030006 1 DEL PEAK 4(2P12) MUTATION ANALYSIS 20 (3%) 563 0.71243 1 0.16746 1 0.0033434 1 0.3606 1 1 1 0.37775 1 0.54155 1 0.82113 1 0.018135 1 0.27122 1 0.88434 1 0.31889 1 DEL PEAK 5(2Q22.1) MUTATION ANALYSIS 34 (6%) 549 0.89707 1 0.64379 1 0.84329 1 0.53848 1 0.62775 1 0.71461 1 0.63917 1 0.59741 1 0.98189 1 1 1 1 1 0.88026 1 DEL PEAK 6(2Q37.2) MUTATION ANALYSIS 30 (5%) 553 0.7424 1 0.12783 1 0.8337 1 0.18311 1 0.33712 1 0.17459 1 0.12503 1 0.45686 1 0.9364 1 1 1 0.35609 1 0.85663 1 DEL PEAK 7(3P26.3) MUTATION ANALYSIS 85 (15%) 498 0.011596 1 0.85878 1 0.69159 1 0.010452 1 0.031568 1 0.023446 1 0.0012124 1 0.63827 1 0.18154 1 0.13048 1 0.046602 1 0.032037 1 DEL PEAK 8(3P14.2) MUTATION ANALYSIS 106 (18%) 477 0.36656 1 0.53799 1 0.80843 1 0.14819 1 0.13033 1 0.1834 1 0.037235 1 0.52017 1 0.3753 1 0.67039 1 0.20541 1 0.027129 1 DEL PEAK 9(3Q26.31) MUTATION ANALYSIS 58 (10%) 525 0.60777 1 0.9708 1 0.87717 1 0.0035687 1 0.0098427 1 0.48008 1 0.47701 1 0.12667 1 0.035898 1 0.22277 1 0.25794 1 0.53417 1 DEL PEAK 10(4P16.1) MUTATION ANALYSIS 185 (32%) 398 0.11994 1 0.97138 1 0.057175 1 0.0030636 1 0.98978 1 0.00042433 0.365 0.0081235 1 0.090413 1 0.022959 1 2.8487e-05 0.0251 0.067872 1 0.0018961 1 DEL PEAK 11(4Q22.1) MUTATION ANALYSIS 202 (35%) 381 0.4897 1 0.39276 1 0.004505 1 0.031493 1 0.09588 1 0.0013846 1 0.34267 1 0.13903 1 0.0011775 0.991 0.0011936 1 0.79198 1 0.0035072 1 DEL PEAK 12(4Q35.1) MUTATION ANALYSIS 213 (37%) 370 0.54341 1 0.31669 1 0.042219 1 0.22068 1 0.50152 1 0.004059 1 0.35868 1 0.86312 1 0.02526 1 0.001793 1 0.72402 1 0.030188 1 DEL PEAK 13(5Q11.2) MUTATION ANALYSIS 141 (24%) 442 0.17653 1 0.13371 1 0.030001 1 0.021643 1 1 1 0.0073479 1 0.020897 1 1 1 0.010605 1 0.00098571 0.833 0.68999 1 0.027751 1 DEL PEAK 14(5Q22.2) MUTATION ANALYSIS 173 (30%) 410 0.14517 1 0.49165 1 0.12869 1 0.058467 1 0.76892 1 0.018038 1 0.028918 1 0.58647 1 0.052549 1 0.00035892 0.31 0.19675 1 0.16974 1 DEL PEAK 15(6P25.3) MUTATION ANALYSIS 78 (13%) 505 0.33155 1 0.058441 1 0.89053 1 0.61455 1 0.24871 1 0.45536 1 0.34857 1 0.088514 1 0.53434 1 0.34403 1 0.40817 1 0.75341 1 DEL PEAK 16(6Q26) MUTATION ANALYSIS 90 (15%) 493 0.063565 1 0.96162 1 0.36381 1 0.071332 1 0.053162 1 0.0089124 1 0.044689 1 0.30233 1 0.043806 1 0.63491 1 0.10995 1 0.0099293 1 DEL PEAK 17(7Q31.1) MUTATION ANALYSIS 15 (3%) 568 0.72613 1 0.34267 1 1 1 0.84054 1 0.52311 1 0.63347 1 0.32052 1 0.3057 1 0.52086 1 1 1 0.72836 1 0.61133 1 DEL PEAK 18(8P23.3) MUTATION ANALYSIS 276 (47%) 307 0.88209 1 0.24753 1 1.0865e-05 0.00966 0.0017034 1 0.084818 1 2.9823e-05 0.0263 0.017055 1 0.15749 1 1.9319e-05 0.0171 0.015542 1 0.021871 1 0.00054752 0.468 DEL PEAK 19(8P23.2) MUTATION ANALYSIS 276 (47%) 307 0.73183 1 0.20935 1 2.551e-05 0.0226 0.00051527 0.441 0.077292 1 1.6812e-05 0.0149 0.0080752 1 0.080734 1 2.1414e-05 0.019 0.015542 1 0.0086601 1 0.00054683 0.468 DEL PEAK 20(8P22) MUTATION ANALYSIS 289 (50%) 294 0.34656 1 0.32587 1 0.00039382 0.339 0.0001418 0.123 0.073359 1 7.2194e-07 0.000648 0.0030077 1 0.21292 1 0.00018236 0.158 0.019647 1 0.012347 1 0.0001454 0.126 DEL PEAK 21(8Q11.1) MUTATION ANALYSIS 45 (8%) 538 0.79987 1 0.42589 1 0.21748 1 0.033438 1 0.72129 1 0.024895 1 0.0021069 1 0.16133 1 0.43894 1 0.51721 1 0.34687 1 0.27323 1 DEL PEAK 22(9P24.2) MUTATION ANALYSIS 79 (14%) 504 0.019366 1 0.1142 1 0.49652 1 0.35893 1 0.53662 1 0.10311 1 0.012039 1 0.039565 1 0.42608 1 0.35012 1 0.10831 1 0.23161 1 DEL PEAK 23(10P15.3) MUTATION ANALYSIS 103 (18%) 480 0.40021 1 0.029741 1 0.22389 1 0.076617 1 0.7605 1 0.0087435 1 0.19389 1 1 1 0.34551 1 0.0014185 1 0.94362 1 0.049966 1 DEL PEAK 24(10Q21.1) MUTATION ANALYSIS 120 (21%) 463 0.82391 1 0.016704 1 0.48943 1 0.14031 1 0.70875 1 0.092715 1 0.54048 1 0.6813 1 0.10474 1 0.0033147 1 0.35803 1 0.15873 1 DEL PEAK 25(10Q23.31) MUTATION ANALYSIS 147 (25%) 436 0.47581 1 0.011455 1 0.041358 1 0.035862 1 0.24529 1 0.010786 1 0.036206 1 0.92384 1 0.018318 1 0.0012978 1 0.58902 1 0.20813 1 DEL PEAK 26(10Q25.2) MUTATION ANALYSIS 142 (24%) 441 0.97579 1 0.080214 1 0.12884 1 0.11941 1 0.17107 1 0.0073479 1 0.2926 1 1 1 0.028847 1 0.0010329 0.872 0.53496 1 0.15849 1 DEL PEAK 27(11Q22.3) MUTATION ANALYSIS 105 (18%) 478 0.28827 1 0.454 1 0.085743 1 0.77154 1 0.38773 1 0.07782 1 0.64122 1 0.51695 1 0.04983 1 0.060177 1 0.62389 1 0.05273 1 DEL PEAK 28(12P13.1) MUTATION ANALYSIS 79 (14%) 504 0.074023 1 0.41172 1 0.02793 1 0.57669 1 0.41802 1 0.017585 1 0.067195 1 0.46683 1 0.0005593 0.477 0.35012 1 0.75108 1 0.88017 1 DEL PEAK 29(12Q21.31) MUTATION ANALYSIS 78 (13%) 505 0.43921 1 0.53775 1 0.21665 1 0.15454 1 0.62289 1 0.056012 1 0.093424 1 1 1 0.017957 1 0.34403 1 0.73278 1 0.13413 1 DEL PEAK 30(14Q11.2) MUTATION ANALYSIS 193 (33%) 390 0.15015 1 0.51757 1 0.013111 1 0.76544 1 0.49403 1 0.021545 1 0.26169 1 1 1 6.8991e-06 0.00615 0.48761 1 0.91472 1 0.68069 1 DEL PEAK 31(14Q31.1) MUTATION ANALYSIS 198 (34%) 385 0.47966 1 0.2798 1 0.018342 1 0.30945 1 0.37388 1 0.022957 1 0.0253 1 0.25496 1 2.2743e-06 0.00204 0.72498 1 0.68574 1 0.3516 1 DEL PEAK 32(14Q31.1) MUTATION ANALYSIS 202 (35%) 381 0.27902 1 0.40164 1 0.01419 1 0.2841 1 0.28655 1 0.033179 1 0.042537 1 0.3386 1 3.9506e-06 0.00353 0.72574 1 0.70409 1 0.34065 1 DEL PEAK 33(15Q11.2) MUTATION ANALYSIS 235 (40%) 348 0.72237 1 0.74792 1 0.18366 1 0.092254 1 0.6956 1 0.0074077 1 0.207 1 0.4463 1 0.044218 1 0.034511 1 0.74914 1 0.056138 1 DEL PEAK 34(15Q21.1) MUTATION ANALYSIS 228 (39%) 355 0.49105 1 0.77975 1 0.027981 1 0.18002 1 0.79384 1 0.015858 1 0.18062 1 0.26975 1 0.010056 1 0.032124 1 0.45253 1 0.052889 1 DEL PEAK 35(15Q22.33) MUTATION ANALYSIS 218 (37%) 365 0.62068 1 0.45678 1 0.0091519 1 0.01158 1 0.065277 1 0.0029348 1 0.14854 1 0.66787 1 0.0041715 1 0.0021409 1 0.59768 1 0.02688 1 DEL PEAK 36(16P13.3) MUTATION ANALYSIS 59 (10%) 524 7.0379e-05 0.0617 0.21968 1 0.35952 1 0.048471 1 0.05517 1 0.18689 1 0.51316 1 1 1 0.41436 1 0.60884 1 0.76077 1 0.067532 1 DEL PEAK 37(16Q23.1) MUTATION ANALYSIS 73 (13%) 510 0.034359 1 0.23007 1 0.403 1 0.26113 1 0.18036 1 0.6469 1 0.9518 1 0.1328 1 0.74486 1 1 1 0.97096 1 0.27889 1 DEL PEAK 38(17P12) MUTATION ANALYSIS 345 (59%) 238 0.64094 1 0.15069 1 0.0012521 1 0.0018824 1 0.4781 1 0.00011156 0.0974 0.024197 1 0.44733 1 3.4401e-08 3.1e-05 0.32169 1 0.15772 1 0.0034651 1 DEL PEAK 39(17Q24.3) MUTATION ANALYSIS 85 (15%) 498 0.65234 1 0.35945 1 0.79271 1 0.11896 1 0.25283 1 0.0043039 1 0.38503 1 0.099211 1 0.99478 1 0.62599 1 0.37218 1 0.041658 1 DEL PEAK 40(18P11.31) MUTATION ANALYSIS 347 (60%) 236 0.99541 1 0.084354 1 2.9543e-06 0.00264 0.0016895 1 0.93888 1 0.014784 1 0.00048527 0.417 0.7999 1 5.2296e-17 4.76e-14 0.32394 1 0.019178 1 0.5726 1 DEL PEAK 41(18Q12.2) MUTATION ANALYSIS 392 (67%) 191 0.83642 1 0.12262 1 1.819e-09 1.64e-06 0.00059625 0.508 0.36532 1 0.0001315 0.114 0.0036931 1 0.33192 1 2.4816e-18 2.26e-15 0.034283 1 0.048764 1 0.016804 1 DEL PEAK 42(18Q21.2) MUTATION ANALYSIS 409 (70%) 174 0.73882 1 0.12739 1 1.2172e-09 1.1e-06 5.5218e-05 0.0485 0.32539 1 2.3191e-06 0.00208 0.0012901 1 0.10223 1 1.0505e-16 9.56e-14 0.063813 1 0.049494 1 0.0024676 1 DEL PEAK 43(18Q22.1) MUTATION ANALYSIS 404 (69%) 179 0.54484 1 0.30642 1 2.1445e-07 0.000193 0.00012282 0.107 0.48038 1 2.8374e-05 0.0251 0.0019112 1 0.15064 1 5.8023e-16 5.27e-13 0.063224 1 0.093271 1 0.0043059 1 DEL PEAK 44(19P13.3) MUTATION ANALYSIS 93 (16%) 490 0.76901 1 0.17907 1 0.030414 1 0.0014344 1 0.38589 1 5.8523e-05 0.0514 0.014309 1 0.65195 1 0.060823 1 0.64085 1 0.16321 1 0.0028298 1 DEL PEAK 45(19Q13.43) MUTATION ANALYSIS 68 (12%) 515 0.41422 1 0.86319 1 0.11042 1 0.0060574 1 0.43755 1 0.015033 1 0.06829 1 0.24768 1 0.36909 1 0.28304 1 0.83352 1 0.020135 1 DEL PEAK 46(20P12.1) MUTATION ANALYSIS 180 (31%) 403 0.050809 1 0.48057 1 0.035201 1 0.23801 1 0.46176 1 0.21905 1 0.75632 1 0.32372 1 0.11502 1 0.063203 1 0.32051 1 0.8266 1 DEL PEAK 47(20P12.1) MUTATION ANALYSIS 180 (31%) 403 0.050809 1 0.48057 1 0.035201 1 0.23801 1 0.46176 1 0.21905 1 0.75632 1 0.32372 1 0.11502 1 0.063203 1 0.32051 1 0.8266 1 DEL PEAK 48(21Q11.2) MUTATION ANALYSIS 198 (34%) 385 0.77129 1 0.73221 1 0.005711 1 0.30803 1 0.95604 1 0.051969 1 0.55719 1 0.53998 1 0.00049118 0.422 0.17605 1 0.79207 1 0.0054935 1 DEL PEAK 49(22Q13.32) MUTATION ANALYSIS 209 (36%) 374 0.079486 1 0.69702 1 0.24315 1 0.020946 1 0.40125 1 0.00051057 0.438 0.021986 1 0.66529 1 0.0068804 1 0.72828 1 0.53439 1 0.012856 1