Molecular subtypes MRNA_CNMF MRNA_CHIERARCHICAL CN_CNMF METHLYATION_CNMF RPPA_CNMF RPPA_CHIERARCHICAL MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q 1p gain 0 (0%) 574 0.4079 1 0.37497 1 0.83498 1 0.31611 1 0.36808 1 0.23229 1 0.74216 1 0.48847 1 0.51953 1 0.8362 1 0.48713 1 0.61723 1 1q gain 0 (0%) 508 0.60149 1 0.96662 1 0.019359 1 0.74409 1 0.13611 1 0.17932 1 0.22992 1 0.24733 1 0.071521 1 0.35748 1 0.065449 1 0.24271 1 2p gain 0 (0%) 528 0.060801 1 0.00032169 0.263 0.0040083 1 6.6961e-05 0.056 0.044055 1 0.35745 1 0.00097772 0.782 0.0067301 1 0.10335 1 0.036519 1 0.48079 1 0.0098232 1 2q gain 0 (0%) 529 0.017776 1 8.5204e-05 0.0711 0.00059696 0.484 1.3487e-06 0.00115 0.11852 1 0.80609 1 0.0046907 1 0.012816 1 0.096625 1 0.13202 1 0.8463 1 0.15686 1 3p gain 0 (0%) 553 0.13264 1 0.59276 1 0.0020175 1 0.22529 1 0.85622 1 0.76991 1 0.72887 1 0.43993 1 0.11295 1 0.059205 1 0.30724 1 0.063399 1 3q gain 0 (0%) 536 0.23493 1 0.089138 1 5.4032e-06 0.00457 0.031964 1 0.34738 1 0.65544 1 0.11825 1 0.21245 1 0.042444 1 0.43522 1 0.10421 1 0.39763 1 4p gain 0 (0%) 582 NA NA NA NA 0.41833 1 0.15007 1 0.37536 1 0.33915 1 0.20736 1 0.21456 1 0.13265 1 0.18624 1 0.079643 1 0.25162 1 4q gain 0 (0%) 581 0.70693 1 0.71936 1 0.23833 1 0.47011 1 0.59847 1 0.64544 1 NA NA NA NA 0.40242 1 0.042023 1 NA NA NA NA 5p gain 0 (0%) 527 0.13784 1 0.66124 1 0.0025967 1 0.19844 1 0.50908 1 0.86337 1 0.20846 1 0.030094 1 0.91494 1 0.88076 1 0.49021 1 0.95353 1 5q gain 0 (0%) 554 0.52676 1 0.82563 1 0.0038903 1 0.060008 1 0.91721 1 0.57368 1 0.064117 1 0.01234 1 0.7806 1 0.26184 1 0.89404 1 0.95739 1 6p gain 0 (0%) 509 0.18547 1 0.0029461 1 3.3929e-07 0.000292 0.22614 1 0.79011 1 0.12022 1 0.020618 1 0.50825 1 0.80691 1 0.66673 1 0.40637 1 0.96809 1 6q gain 0 (0%) 515 0.30905 1 0.04006 1 1.0912e-06 0.000933 0.14981 1 0.36252 1 0.041776 1 0.36499 1 0.29579 1 0.52022 1 0.75812 1 0.79699 1 0.44877 1 7p gain 0 (0%) 291 0.00082809 0.666 0.0012228 0.973 4.7272e-22 4.25e-19 1.8374e-07 0.000159 0.031577 1 0.020253 1 3.9586e-07 0.000341 5.5141e-08 4.79e-05 0.012936 1 0.070064 1 0.00010634 0.0885 0.63132 1 7q gain 0 (0%) 327 0.0012916 1 0.0090479 1 1.6953e-15 1.5e-12 8.2417e-06 0.00695 0.30063 1 0.1801 1 2.5263e-07 0.000218 9.8416e-07 0.000842 0.028943 1 0.25036 1 0.00034309 0.281 0.6649 1 8p gain 0 (0%) 478 0.96287 1 0.71705 1 1.1385e-06 0.000972 0.24505 1 0.24795 1 0.18503 1 0.5329 1 0.78733 1 0.51708 1 0.69589 1 0.22775 1 0.72266 1 8q gain 0 (0%) 351 0.14548 1 0.017245 1 1.1872e-39 1.07e-36 0.027978 1 0.13039 1 0.34167 1 0.0007641 0.615 0.011563 1 0.26633 1 0.53384 1 0.018604 1 0.46005 1 9p gain 0 (0%) 508 0.50322 1 1 1 0.041316 1 0.60052 1 0.70613 1 0.20389 1 0.3694 1 0.19599 1 0.7409 1 0.64006 1 0.42432 1 0.77805 1 9q gain 0 (0%) 524 0.38501 1 0.85376 1 0.11358 1 0.63908 1 0.58193 1 0.033571 1 1 1 0.74782 1 0.18691 1 0.59262 1 1 1 0.59022 1 10p gain 0 (0%) 561 0.19642 1 0.6282 1 0.045261 1 0.0073023 1 0.47436 1 0.85739 1 0.4976 1 0.38999 1 0.4457 1 0.68859 1 0.050432 1 0.52581 1 10q gain 0 (0%) 575 0.88738 1 0.2775 1 0.35881 1 0.018098 1 0.37734 1 0.2885 1 1 1 0.33153 1 0.52869 1 0.5959 1 0.25691 1 0.45648 1 11p gain 0 (0%) 548 0.061484 1 0.2751 1 9.4013e-05 0.0784 0.00013975 0.116 0.77162 1 0.76414 1 0.10197 1 0.0030773 1 0.574 1 0.82238 1 0.022533 1 0.072489 1 11q gain 0 (0%) 548 0.095636 1 0.029856 1 6.118e-05 0.0512 0.0004886 0.397 0.42896 1 0.65066 1 0.013479 1 0.0012641 1 0.67827 1 0.20998 1 0.0023233 1 0.75982 1 12p gain 0 (0%) 495 0.52141 1 0.79554 1 0.065438 1 0.0083064 1 0.62389 1 0.17044 1 0.72415 1 0.091949 1 0.064803 1 0.14726 1 0.0018949 1 0.012824 1 12q gain 0 (0%) 508 0.42228 1 0.90322 1 0.022039 1 0.0011871 0.946 0.79348 1 0.24583 1 0.45835 1 0.043068 1 0.058544 1 0.091358 1 0.000631 0.51 0.0032519 1 13q gain 0 (0%) 270 8.5622e-07 0.000734 0.00016435 0.135 1.8243e-39 1.65e-36 5.6994e-09 4.96e-06 0.033065 1 0.079997 1 3.2565e-06 0.00276 5.1984e-07 0.000447 0.00067699 0.546 0.7051 1 1.5913e-07 0.000138 0.038649 1 14q gain 0 (0%) 568 0.51891 1 0.25062 1 0.12313 1 1 1 0.91959 1 0.40803 1 0.17805 1 0.21481 1 0.67638 1 0.80658 1 0.74465 1 0.43463 1 15q gain 0 (0%) 582 NA NA NA NA 0.4868 1 0.87643 1 0.22226 1 0.13101 1 0.74038 1 0.45279 1 0.86797 1 1 1 0.83596 1 0.47555 1 16p gain 0 (0%) 492 0.070186 1 0.13672 1 1.4096e-16 1.25e-13 0.00092838 0.745 0.56153 1 0.029508 1 0.011062 1 0.0026507 1 0.42807 1 0.43097 1 0.088546 1 0.7707 1 16q gain 0 (0%) 492 0.076574 1 0.13022 1 1.3918e-18 1.25e-15 0.001044 0.834 0.58192 1 0.018203 1 0.0065825 1 0.00066866 0.54 0.63939 1 0.90362 1 0.010545 1 0.47387 1 17p gain 0 (0%) 577 0.77999 1 0.0070285 1 0.7504 1 0.69696 1 0.51437 1 0.60668 1 0.66594 1 0.023981 1 0.69046 1 0.90384 1 1 1 0.61586 1 17q gain 0 (0%) 522 0.050357 1 0.034999 1 0.00065833 0.532 0.0046161 1 0.66639 1 0.083717 1 0.0018019 1 0.00020947 0.172 0.06559 1 0.95305 1 0.78309 1 0.47816 1 18p gain 0 (0%) 568 0.20744 1 0.059231 1 0.00035416 0.289 0.0064408 1 0.63988 1 0.89691 1 0.6802 1 0.36349 1 0.48586 1 0.4042 1 0.57881 1 0.85425 1 18q gain 0 (0%) 577 NA NA NA NA 0.033389 1 0.0035859 1 0.77011 1 0.4677 1 0.22265 1 0.35597 1 0.13456 1 0.17855 1 0.19448 1 1 1 19p gain 0 (0%) 535 0.1938 1 0.14574 1 0.00011998 0.0996 0.015865 1 0.27934 1 0.028523 1 0.042282 1 0.026235 1 0.71304 1 0.35557 1 0.8675 1 0.84876 1 19q gain 0 (0%) 525 0.01571 1 0.041236 1 0.0039379 1 0.062206 1 0.026647 1 0.030213 1 0.20846 1 0.095708 1 1 1 0.41976 1 0.80336 1 0.22077 1 20p gain 0 (0%) 294 0.00014513 0.12 1.6458e-07 0.000142 1.3788e-17 1.23e-14 6.0204e-06 0.00509 0.0041347 1 0.022228 1 1.9571e-09 1.71e-06 2.0084e-09 1.75e-06 0.28068 1 0.66161 1 1.7968e-05 0.0151 0.40306 1 20q gain 0 (0%) 177 4.3778e-17 3.91e-14 4.3814e-16 3.9e-13 1.0935e-46 9.91e-44 5.4817e-17 4.88e-14 0.00018088 0.149 0.00015849 0.131 1.9601e-17 1.75e-14 2.257e-21 2.02e-18 0.048104 1 0.73518 1 1.2223e-12 1.07e-09 0.0035245 1 21q gain 0 (0%) 569 0.45625 1 0.71465 1 0.057096 1 0.30036 1 0.30521 1 0.13319 1 0.46524 1 0.93254 1 1 1 0.49777 1 0.78222 1 0.76434 1 22q gain 0 (0%) 582 0.69094 1 0.0070285 1 0.39032 1 0.47011 1 0.92612 1 0.4704 1 0.29892 1 0.10899 1 0.49068 1 0.39755 1 NA NA NA NA Xq gain 0 (0%) 572 0.17835 1 0.4456 1 0.031899 1 0.39173 1 0.14685 1 0.21986 1 1 1 0.75928 1 0.26758 1 0.91812 1 0.39799 1 0.8214 1 1p loss 0 (0%) 520 0.19356 1 0.0035767 1 0.00039684 0.324 0.00011507 0.0956 0.95353 1 0.81191 1 0.0079403 1 0.15925 1 0.2261 1 0.20221 1 0.5955 1 0.1454 1 1q loss 0 (0%) 564 0.55906 1 0.0258 1 0.18898 1 0.035597 1 0.747 1 0.94863 1 0.11629 1 0.46027 1 0.59952 1 1 1 0.68903 1 0.40317 1 2p loss 0 (0%) 578 1 1 0.73888 1 0.10105 1 NA NA 0.043211 1 0.80273 1 NA NA NA NA 0.035348 1 0.023446 1 NA NA NA NA 2q loss 0 (0%) 581 0.73955 1 0.61416 1 0.58589 1 NA NA 0.12336 1 0.29927 1 NA NA NA NA 0.060881 1 0.014745 1 NA NA NA NA 3p loss 0 (0%) 551 1 1 0.29167 1 0.36244 1 0.81685 1 0.78008 1 0.72439 1 1 1 0.42908 1 0.3786 1 0.85199 1 0.73971 1 0.61688 1 3q loss 0 (0%) 570 0.44953 1 0.01378 1 0.078004 1 0.069693 1 0.059873 1 0.46177 1 0.66641 1 1 1 0.89711 1 0.92443 1 0.7622 1 0.71359 1 4p loss 0 (0%) 462 0.17593 1 0.21032 1 1.8067e-12 1.58e-09 0.001054 0.841 0.38668 1 0.88949 1 0.44898 1 0.040824 1 0.013063 1 0.67528 1 0.0044499 1 0.60437 1 4q loss 0 (0%) 470 0.16238 1 0.13168 1 2.6196e-13 2.31e-10 0.00043733 0.356 0.48653 1 0.81014 1 0.51127 1 0.085131 1 0.013396 1 0.28618 1 0.03965 1 0.10525 1 5p loss 0 (0%) 555 0.26897 1 0.44993 1 0.00057022 0.463 0.030217 1 0.38583 1 0.44868 1 0.13428 1 0.05862 1 0.93842 1 0.29091 1 0.61899 1 0.21208 1 5q loss 0 (0%) 528 0.014448 1 0.01062 1 4.4819e-06 0.0038 0.061409 1 0.060103 1 0.87975 1 0.049072 1 0.019041 1 0.68623 1 0.18804 1 0.0095189 1 0.14276 1 6p loss 0 (0%) 570 0.13176 1 0.18635 1 0.64328 1 0.35586 1 0.39206 1 0.64127 1 0.4013 1 0.28667 1 0.64577 1 0.73501 1 0.39429 1 0.58433 1 6q loss 0 (0%) 555 0.78382 1 0.62104 1 0.66298 1 0.88572 1 0.21881 1 0.14518 1 0.79784 1 0.84151 1 0.61556 1 0.15544 1 0.72451 1 0.97334 1 7q loss 0 (0%) 586 NA NA NA NA 0.39892 1 NA NA 0.84425 1 1 1 NA NA NA NA 0.78093 1 1 1 NA NA NA NA 8p loss 0 (0%) 442 0.0040565 1 0.0018576 1 3.5494e-26 3.2e-23 0.00021254 0.174 0.080058 1 0.039313 1 0.017241 1 1.7256e-06 0.00147 0.41473 1 0.49416 1 0.00094533 0.757 0.48717 1 8q loss 0 (0%) 578 0.81462 1 0.86854 1 0.31678 1 0.57992 1 0.02872 1 0.65765 1 0.83575 1 0.81758 1 0.31353 1 0.14799 1 0.83596 1 0.086014 1 9p loss 0 (0%) 550 0.9107 1 0.28571 1 0.0016136 1 0.0020262 1 0.32015 1 0.14697 1 0.093771 1 0.10901 1 0.055609 1 0.6309 1 0.018277 1 0.077758 1 9q loss 0 (0%) 552 0.24114 1 0.0096951 1 0.00010194 0.0849 3.3876e-05 0.0284 0.53111 1 0.20908 1 0.015923 1 0.0096925 1 0.019926 1 0.89394 1 0.0031259 1 0.12402 1 10p loss 0 (0%) 548 0.71966 1 0.48999 1 0.0031644 1 0.41462 1 0.095772 1 0.68205 1 0.30457 1 0.05454 1 0.09571 1 0.30735 1 0.71586 1 1 1 10q loss 0 (0%) 543 0.33458 1 0.41893 1 9.1678e-06 0.00772 0.13527 1 0.021627 1 0.7719 1 0.065329 1 0.044408 1 0.54713 1 0.68737 1 0.12165 1 0.58334 1 11p loss 0 (0%) 547 0.72982 1 0.33609 1 0.029209 1 0.22181 1 0.28922 1 0.17436 1 0.17005 1 0.35582 1 0.32831 1 0.15888 1 0.2459 1 0.9117 1 11q loss 0 (0%) 537 0.82653 1 0.46367 1 0.0037598 1 0.063404 1 0.78072 1 0.29206 1 0.33276 1 0.73712 1 0.23338 1 0.094989 1 0.20113 1 0.94942 1 12p loss 0 (0%) 556 0.093826 1 0.22765 1 5.2572e-07 0.000451 0.32297 1 0.82927 1 0.37272 1 0.50746 1 0.8908 1 0.86343 1 0.21701 1 0.17457 1 0.49152 1 12q loss 0 (0%) 560 0.35195 1 0.083441 1 6.3539e-06 0.00536 0.32455 1 0.78398 1 0.63189 1 0.18516 1 0.26465 1 0.90403 1 0.74481 1 0.42987 1 0.81777 1 13q loss 0 (0%) 576 0.29716 1 0.28202 1 0.14568 1 0.16917 1 0.27037 1 0.10777 1 0.24507 1 0.057082 1 0.8006 1 0.56572 1 0.046038 1 0.30659 1 14q loss 0 (0%) 443 0.00014219 0.118 1.7675e-06 0.0015 1.0744e-37 9.7e-35 1.3409e-07 0.000116 0.0022992 1 0.0094415 1 2.8685e-05 0.0241 5.3501e-06 0.00453 0.10531 1 0.90277 1 4.9032e-07 0.000422 0.2481 1 15q loss 0 (0%) 431 0.0050013 1 0.003108 1 1.8627e-18 1.67e-15 0.0080297 1 0.31045 1 0.83197 1 0.0034116 1 0.00013948 0.116 0.48954 1 0.52303 1 0.00028019 0.23 0.49785 1 16p loss 0 (0%) 573 0.26576 1 0.18385 1 0.45979 1 0.16917 1 0.64356 1 0.64644 1 0.30188 1 0.25407 1 1 1 0.8362 1 0.66909 1 0.17175 1 16q loss 0 (0%) 571 0.028437 1 0.24292 1 0.061666 1 0.38497 1 0.65531 1 0.74782 1 0.18149 1 0.13803 1 0.095065 1 0.72414 1 0.33121 1 0.23473 1 17p loss 0 (0%) 333 0.00041887 0.341 0.0022309 1 1.5049e-23 1.36e-20 6.1126e-08 5.31e-05 0.26815 1 0.47306 1 4.7277e-05 0.0396 2.7838e-08 2.42e-05 0.0095324 1 0.012792 1 2.8294e-06 0.00241 0.35071 1 17q loss 0 (0%) 540 0.84393 1 0.48675 1 0.0054631 1 0.66647 1 0.34225 1 0.45448 1 0.056965 1 0.071099 1 0.41206 1 0.91064 1 0.081171 1 0.15458 1 18p loss 0 (0%) 254 5.2449e-13 4.62e-10 1.5838e-11 1.39e-08 9.9583e-49 9.03e-46 7.7448e-22 6.95e-19 0.0097384 1 0.010895 1 5.8444e-14 5.16e-11 8.0188e-16 7.12e-13 0.033302 1 0.90705 1 2.2131e-14 1.96e-11 0.012818 1 18q loss 0 (0%) 228 1.3553e-12 1.19e-09 4.3076e-12 3.77e-09 6.6397e-51 6.03e-48 8.8077e-23 7.93e-20 0.031093 1 0.094846 1 2.5454e-14 2.25e-11 1.7252e-14 1.53e-11 0.0032878 1 0.51754 1 2.8904e-13 2.55e-10 0.01392 1 19p loss 0 (0%) 568 0.73955 1 0.4311 1 0.00084871 0.682 0.024727 1 0.61421 1 0.70494 1 0.0041396 1 0.083726 1 0.059025 1 1 1 0.1371 1 0.1712 1 19q loss 0 (0%) 572 0.73955 1 0.4311 1 0.0022678 1 0.18604 1 0.7061 1 1 1 0.0035834 1 0.13613 1 0.26758 1 0.70733 1 0.069105 1 0.31908 1 20p loss 0 (0%) 540 0.041217 1 0.18413 1 0.00060329 0.489 0.16314 1 0.40173 1 0.58147 1 0.63275 1 0.12267 1 0.66611 1 0.93838 1 0.41249 1 0.69699 1 20q loss 0 (0%) 586 NA NA NA NA 0.64677 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 21q loss 0 (0%) 470 0.37642 1 0.51686 1 0.0013286 1 0.074109 1 0.3103 1 0.3099 1 0.044857 1 0.054884 1 0.075863 1 0.68571 1 0.12449 1 0.70768 1 22q loss 0 (0%) 461 0.014768 1 0.0060575 1 3.506e-11 3.06e-08 0.059942 1 0.3361 1 0.26407 1 0.081482 1 0.0065601 1 0.18331 1 0.68387 1 0.0016442 1 0.36071 1 Xq loss 0 (0%) 577 0.76483 1 1 1 0.23737 1 0.67139 1 0.016982 1 0.34464 1 0.62994 1 0.52554 1 0.39345 1 0.20495 1 0.28857 1 0.10857 1