This pipeline computes the correlation between significant copy number variation (cnv) genes and molecular subtypes.
Testing the association between copy number variation of 76 peak regions and 12 molecular subtypes across 589 patients, 207 significant findings detected with Q value < 0.25.
-
Amp Peak 1(1q31.1) cnvs correlated to 'CN_CNMF'.
-
Amp Peak 2(2q33.1) cnvs correlated to 'MRNA_CHIERARCHICAL' and 'CN_CNMF'.
-
Amp Peak 3(5p12) cnvs correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.
-
Amp Peak 5(6p21.1) cnvs correlated to 'CN_CNMF'.
-
Amp Peak 6(7p21.3) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
-
Amp Peak 7(8p11.23) cnvs correlated to 'CN_CNMF'.
-
Amp Peak 8(8p11.21) cnvs correlated to 'CN_CNMF'.
-
Amp Peak 9(8q12.1) cnvs correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
-
Amp Peak 10(8q24.21) cnvs correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'MRNASEQ_CNMF'.
-
Amp Peak 12(11p15.5) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
Amp Peak 14(13q12.13) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
-
Amp Peak 15(13q12.2) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
-
Amp Peak 16(13q22.1) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
-
Amp Peak 18(16p11.2) cnvs correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
-
Amp Peak 19(17q12) cnvs correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
-
Amp Peak 20(17q24.1) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
-
Amp Peak 21(19p13.2) cnvs correlated to 'CN_CNMF'.
-
Amp Peak 22(19q12) cnvs correlated to 'CN_CNMF'.
-
Amp Peak 23(20p11.23) cnvs correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
-
Amp Peak 24(20q11.21) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
-
Amp Peak 25(20q12) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
Amp Peak 26(20q13.32) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
Amp Peak 27(Xq28) cnvs correlated to 'CN_CNMF'.
-
Del Peak 1(1p36.11) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
-
Del Peak 2(1p33) cnvs correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
-
Del Peak 3(1p13.2) cnvs correlated to 'CN_CNMF'.
-
Del Peak 10(4p16.1) cnvs correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
-
Del Peak 11(4q22.1) cnvs correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
-
Del Peak 12(4q35.1) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_MATURE_CNMF'.
-
Del Peak 13(5q11.2) cnvs correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.
-
Del Peak 14(5q22.2) cnvs correlated to 'CN_CNMF'.
-
Del Peak 18(8p23.3) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
-
Del Peak 19(8p23.2) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
-
Del Peak 20(8p22) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
-
Del Peak 21(8q11.1) cnvs correlated to 'CN_CNMF'.
-
Del Peak 23(10p15.3) cnvs correlated to 'CN_CNMF'.
-
Del Peak 24(10q21.1) cnvs correlated to 'CN_CNMF'.
-
Del Peak 25(10q23.31) cnvs correlated to 'CN_CNMF'.
-
Del Peak 26(10q25.2) cnvs correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
-
Del Peak 28(12p13.1) cnvs correlated to 'CN_CNMF'.
-
Del Peak 29(12q21.31) cnvs correlated to 'CN_CNMF'.
-
Del Peak 30(14q11.2) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
-
Del Peak 31(14q31.1) cnvs correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
-
Del Peak 32(14q31.1) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
-
Del Peak 33(15q11.2) cnvs correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
-
Del Peak 34(15q21.1) cnvs correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
-
Del Peak 35(15q22.33) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
-
Del Peak 38(17p12) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
-
Del Peak 40(18p11.31) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
Del Peak 41(18q12.2) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
Del Peak 42(18q21.2) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
-
Del Peak 43(18q22.1) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
-
Del Peak 44(19p13.3) cnvs correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
-
Del Peak 45(19q13.43) cnvs correlated to 'CN_CNMF'.
-
Del Peak 46(20p12.1) cnvs correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
-
Del Peak 47(20p12.1) cnvs correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
-
Del Peak 48(21q11.2) cnvs correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.
-
Del Peak 49(22q13.32) cnvs correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.
Molecular subtypes |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
Amp Peak 25(20q12) | 0 (0%) | 138 |
1.06e-14 (9.2e-12) |
4.18e-14 (3.62e-11) |
1.08e-36 (9.7e-34) |
4.84e-17 (4.25e-14) |
0.0112 (1.00) |
0.00555 (1.00) |
1.76e-16 (1.55e-13) |
2.08e-19 (1.84e-16) |
0.00736 (1.00) |
0.0543 (1.00) |
2.72e-13 (2.33e-10) |
6.6e-05 (0.0493) |
Amp Peak 26(20q13 32) | 0 (0%) | 135 |
7.8e-14 (6.73e-11) |
2.02e-12 (1.71e-09) |
7.3e-37 (6.55e-34) |
4.58e-16 (4e-13) |
0.0142 (1.00) |
0.0044 (1.00) |
1.76e-16 (1.55e-13) |
2.08e-19 (1.84e-16) |
0.015 (1.00) |
0.114 (1.00) |
3.19e-12 (2.7e-09) |
6.6e-05 (0.0493) |
Del Peak 40(18p11 31) | 0 (0%) | 239 |
5.8e-12 (4.9e-09) |
6.24e-10 (5.23e-07) |
1.03e-44 (9.31e-42) |
4.9e-18 (4.32e-15) |
0.0417 (1.00) |
0.0305 (1.00) |
2.25e-16 (1.97e-13) |
2.42e-15 (2.11e-12) |
0.00459 (1.00) |
0.651 (1.00) |
1e-14 (8.7e-12) |
0.000237 (0.169) |
Del Peak 41(18q12 2) | 0 (0%) | 194 |
1.01e-09 (8.38e-07) |
4.59e-09 (3.79e-06) |
1.14e-52 (1.03e-49) |
1.59e-20 (1.41e-17) |
0.0342 (1.00) |
0.028 (1.00) |
1.77e-15 (1.54e-12) |
4.76e-13 (4.07e-10) |
0.000883 (0.604) |
0.0891 (1.00) |
6.25e-15 (5.44e-12) |
0.00022 (0.158) |
Del Peak 42(18q21 2) | 0 (0%) | 177 |
3.72e-10 (3.12e-07) |
1.64e-08 (1.35e-05) |
5.32e-54 (4.85e-51) |
1.14e-17 (1e-14) |
0.0149 (1.00) |
0.0247 (1.00) |
1.68e-13 (1.44e-10) |
3.46e-13 (2.96e-10) |
7.08e-05 (0.0526) |
0.178 (1.00) |
7.99e-13 (6.81e-10) |
0.000697 (0.483) |
Del Peak 43(18q22 1) | 0 (0%) | 182 |
2.01e-09 (1.67e-06) |
1.23e-07 (9.94e-05) |
4.47e-56 (4.07e-53) |
3.8e-18 (3.35e-15) |
0.0313 (1.00) |
0.02 (1.00) |
3.84e-13 (3.28e-10) |
1.07e-12 (9.07e-10) |
6.66e-05 (0.0496) |
0.377 (1.00) |
2.13e-13 (1.82e-10) |
0.027 (1.00) |
Amp Peak 14(13q12 13) | 0 (0%) | 208 |
1.92e-07 (0.000155) |
4.12e-06 (0.00324) |
5.16e-41 (4.66e-38) |
1.05e-11 (8.87e-09) |
0.0221 (1.00) |
0.064 (1.00) |
1.94e-07 (0.000156) |
1.13e-08 (9.31e-06) |
0.00043 (0.302) |
0.438 (1.00) |
9.89e-10 (8.21e-07) |
0.00135 (0.9) |
Amp Peak 15(13q12 2) | 0 (0%) | 213 |
4.65e-06 (0.00365) |
5.25e-05 (0.0393) |
6.93e-43 (6.26e-40) |
2.31e-12 (1.95e-09) |
0.0243 (1.00) |
0.169 (1.00) |
2.74e-07 (0.000219) |
4.66e-09 (3.84e-06) |
0.00114 (0.767) |
0.497 (1.00) |
2.74e-09 (2.26e-06) |
0.0125 (1.00) |
Amp Peak 16(13q22 1) | 0 (0%) | 208 |
9.73e-06 (0.00755) |
0.000193 (0.14) |
2.14e-39 (1.92e-36) |
3.91e-10 (3.28e-07) |
0.115 (1.00) |
0.174 (1.00) |
4.91e-07 (0.000392) |
2.12e-08 (1.74e-05) |
0.000941 (0.641) |
0.248 (1.00) |
1.21e-07 (9.75e-05) |
0.041 (1.00) |
Amp Peak 24(20q11 21) | 0 (0%) | 140 |
1.19e-13 (1.02e-10) |
9.59e-13 (8.15e-10) |
4.45e-36 (3.99e-33) |
1.99e-18 (1.75e-15) |
0.00688 (1.00) |
0.0103 (1.00) |
4.46e-17 (3.92e-14) |
2.24e-20 (1.99e-17) |
0.0173 (1.00) |
0.164 (1.00) |
9.09e-13 (7.74e-10) |
0.000733 (0.508) |
Del Peak 19(8p23 2) | 0 (0%) | 312 |
0.000258 (0.183) |
0.000146 (0.107) |
3.44e-51 (3.13e-48) |
1.01e-07 (8.2e-05) |
0.15 (1.00) |
0.00316 (1.00) |
2.6e-06 (0.00206) |
8.32e-07 (0.000661) |
0.219 (1.00) |
0.0901 (1.00) |
7.67e-06 (0.00597) |
0.00566 (1.00) |
Del Peak 30(14q11 2) | 0 (0%) | 396 |
3.66e-05 (0.0276) |
5.71e-06 (0.00447) |
1.81e-40 (1.63e-37) |
5e-05 (0.0376) |
0.00366 (1.00) |
0.186 (1.00) |
4e-06 (0.00315) |
9.43e-05 (0.0697) |
0.0609 (1.00) |
0.6 (1.00) |
7.63e-07 (0.000608) |
0.076 (1.00) |
Del Peak 38(17p12) | 0 (0%) | 240 |
8.38e-08 (6.8e-05) |
2.2e-05 (0.0168) |
9.96e-35 (8.91e-32) |
5.81e-09 (4.79e-06) |
0.00858 (1.00) |
0.0247 (1.00) |
1.5e-07 (0.000121) |
1.89e-09 (1.56e-06) |
0.0157 (1.00) |
0.0543 (1.00) |
2.48e-08 (2.02e-05) |
0.156 (1.00) |
Amp Peak 12(11p15 5) | 0 (0%) | 457 |
0.000202 (0.146) |
0.000684 (0.476) |
4.8e-05 (0.0361) |
0.00191 (1.00) |
0.0294 (1.00) |
0.238 (1.00) |
9.96e-05 (0.0735) |
5.09e-05 (0.0382) |
0.437 (1.00) |
0.973 (1.00) |
0.000195 (0.141) |
2.57e-06 (0.00203) |
Del Peak 31(14q31 1) | 0 (0%) | 391 |
0.000773 (0.533) |
0.000257 (0.183) |
4.82e-38 (4.34e-35) |
0.000105 (0.0774) |
0.000694 (0.482) |
0.0357 (1.00) |
1.56e-05 (0.012) |
0.000244 (0.174) |
0.266 (1.00) |
0.572 (1.00) |
3.16e-07 (0.000252) |
0.0778 (1.00) |
Amp Peak 6(7p21 3) | 0 (0%) | 245 |
0.0023 (1.00) |
0.000932 (0.636) |
5.48e-20 (4.86e-17) |
3.32e-06 (0.00262) |
0.0305 (1.00) |
0.0266 (1.00) |
3.18e-08 (2.59e-05) |
2.22e-07 (0.000178) |
0.0065 (1.00) |
0.00219 (1.00) |
3.58e-06 (0.00282) |
0.303 (1.00) |
Del Peak 1(1p36 11) | 0 (0%) | 365 |
0.000114 (0.084) |
0.00379 (1.00) |
7.78e-13 (6.63e-10) |
4.56e-06 (0.00358) |
0.0596 (1.00) |
0.148 (1.00) |
0.000172 (0.125) |
0.000138 (0.101) |
0.45 (1.00) |
0.876 (1.00) |
0.0142 (1.00) |
0.0241 (1.00) |
Del Peak 18(8p23 3) | 0 (0%) | 312 |
0.00168 (1.00) |
0.000518 (0.364) |
3.05e-47 (2.77e-44) |
4.19e-07 (0.000335) |
0.0792 (1.00) |
0.00533 (1.00) |
7.5e-06 (0.00584) |
2.34e-06 (0.00185) |
0.175 (1.00) |
0.184 (1.00) |
1.62e-05 (0.0124) |
0.00856 (1.00) |
Del Peak 20(8p22) | 0 (0%) | 299 |
0.00118 (0.794) |
0.000857 (0.587) |
5.79e-54 (5.27e-51) |
7.97e-08 (6.47e-05) |
0.109 (1.00) |
0.00225 (1.00) |
1.15e-05 (0.00891) |
1.49e-06 (0.00118) |
0.273 (1.00) |
0.0369 (1.00) |
2.24e-05 (0.0171) |
0.00119 (0.796) |
Del Peak 32(14q31 1) | 0 (0%) | 387 |
0.00123 (0.824) |
0.000653 (0.457) |
1.62e-37 (1.45e-34) |
4.57e-05 (0.0345) |
0.00106 (0.717) |
0.0472 (1.00) |
1.12e-05 (0.00867) |
7.35e-05 (0.0546) |
0.402 (1.00) |
0.682 (1.00) |
1.15e-07 (9.27e-05) |
0.107 (1.00) |
Del Peak 35(15q22 33) | 0 (0%) | 369 |
0.000199 (0.144) |
0.00116 (0.781) |
5.8e-21 (5.17e-18) |
0.00187 (1.00) |
0.586 (1.00) |
0.463 (1.00) |
3.29e-05 (0.0249) |
6.57e-06 (0.00513) |
0.792 (1.00) |
0.466 (1.00) |
2.58e-05 (0.0196) |
0.202 (1.00) |
Amp Peak 20(17q24 1) | 0 (0%) | 458 |
0.0257 (1.00) |
0.00126 (0.84) |
1.9e-10 (1.6e-07) |
0.000341 (0.241) |
0.0805 (1.00) |
0.00558 (1.00) |
0.00314 (1.00) |
0.000186 (0.135) |
0.000148 (0.108) |
0.163 (1.00) |
0.414 (1.00) |
0.248 (1.00) |
Del Peak 33(15q11 2) | 0 (0%) | 353 |
0.000821 (0.565) |
0.00487 (1.00) |
3.16e-21 (2.82e-18) |
0.00498 (1.00) |
0.213 (1.00) |
0.359 (1.00) |
0.000148 (0.108) |
2.46e-05 (0.0187) |
0.392 (1.00) |
0.149 (1.00) |
4.91e-06 (0.00384) |
0.648 (1.00) |
Amp Peak 10(8q24 21) | 0 (0%) | 237 |
0.239 (1.00) |
0.000227 (0.162) |
2.31e-45 (2.09e-42) |
0.0028 (1.00) |
0.0214 (1.00) |
0.283 (1.00) |
1.63e-05 (0.0125) |
0.000792 (0.545) |
0.18 (1.00) |
0.173 (1.00) |
0.00134 (0.894) |
0.111 (1.00) |
Amp Peak 18(16p11 2) | 0 (0%) | 427 |
0.0179 (1.00) |
0.00574 (1.00) |
1.6e-20 (1.43e-17) |
0.000541 (0.379) |
0.0141 (1.00) |
0.0157 (1.00) |
1.37e-05 (0.0106) |
2.59e-05 (0.0197) |
0.576 (1.00) |
0.838 (1.00) |
0.000407 (0.287) |
0.122 (1.00) |
Amp Peak 23(20p11 23) | 0 (0%) | 283 |
0.00346 (1.00) |
0.00265 (1.00) |
1.69e-08 (1.39e-05) |
0.0196 (1.00) |
0.00588 (1.00) |
0.226 (1.00) |
0.000164 (0.119) |
0.000695 (0.482) |
0.311 (1.00) |
0.226 (1.00) |
0.000142 (0.104) |
0.165 (1.00) |
Del Peak 10(4p16 1) | 0 (0%) | 402 |
0.0654 (1.00) |
0.437 (1.00) |
7.65e-14 (6.61e-11) |
0.0015 (0.995) |
0.402 (1.00) |
0.923 (1.00) |
0.00477 (1.00) |
2.3e-05 (0.0175) |
0.438 (1.00) |
0.073 (1.00) |
0.00025 (0.178) |
0.188 (1.00) |
Del Peak 12(4q35 1) | 0 (0%) | 374 |
0.021 (1.00) |
0.17 (1.00) |
2.24e-14 (1.94e-11) |
6.21e-05 (0.0465) |
0.295 (1.00) |
0.888 (1.00) |
0.00174 (1.00) |
0.00669 (1.00) |
0.325 (1.00) |
0.0368 (1.00) |
7.68e-05 (0.0569) |
0.0112 (1.00) |
Del Peak 34(15q21 1) | 0 (0%) | 360 |
0.000836 (0.574) |
0.0239 (1.00) |
4.96e-19 (4.39e-16) |
0.0107 (1.00) |
0.106 (1.00) |
0.13 (1.00) |
0.00025 (0.178) |
0.000673 (0.469) |
0.655 (1.00) |
0.267 (1.00) |
0.000104 (0.0768) |
0.599 (1.00) |
Amp Peak 2(2q33 1) | 0 (0%) | 462 |
0.0883 (1.00) |
0.000319 (0.227) |
0.00034 (0.241) |
0.00322 (1.00) |
0.229 (1.00) |
0.901 (1.00) |
0.00186 (1.00) |
0.0177 (1.00) |
0.0684 (1.00) |
0.0243 (1.00) |
0.17 (1.00) |
0.129 (1.00) |
Amp Peak 3(5p12) | 0 (0%) | 480 |
0.0977 (1.00) |
0.435 (1.00) |
2.48e-06 (0.00196) |
0.851 (1.00) |
0.00103 (0.697) |
0.721 (1.00) |
0.000844 (0.579) |
0.000635 (0.444) |
0.914 (1.00) |
0.683 (1.00) |
5.42e-05 (0.0406) |
0.129 (1.00) |
Amp Peak 9(8q12 1) | 0 (0%) | 274 |
0.143 (1.00) |
0.000749 (0.518) |
4.53e-44 (4.1e-41) |
0.0248 (1.00) |
0.0219 (1.00) |
0.0546 (1.00) |
2.55e-05 (0.0194) |
0.00929 (1.00) |
0.165 (1.00) |
0.165 (1.00) |
0.00572 (1.00) |
0.0305 (1.00) |
Amp Peak 19(17q12) | 0 (0%) | 442 |
0.0443 (1.00) |
0.0276 (1.00) |
8.55e-10 (7.12e-07) |
0.00329 (1.00) |
0.136 (1.00) |
0.0592 (1.00) |
0.0011 (0.745) |
2.93e-05 (0.0221) |
0.00639 (1.00) |
0.183 (1.00) |
0.264 (1.00) |
0.288 (1.00) |
Del Peak 2(1p33) | 0 (0%) | 432 |
0.0306 (1.00) |
0.0913 (1.00) |
7.12e-12 (6.01e-09) |
0.000353 (0.249) |
0.859 (1.00) |
0.574 (1.00) |
0.0065 (1.00) |
0.00344 (1.00) |
0.585 (1.00) |
0.157 (1.00) |
0.00955 (1.00) |
0.00219 (1.00) |
Del Peak 11(4q22 1) | 0 (0%) | 385 |
0.0216 (1.00) |
0.031 (1.00) |
2.06e-14 (1.79e-11) |
1.79e-05 (0.0137) |
0.541 (1.00) |
0.77 (1.00) |
0.00123 (0.822) |
0.0124 (1.00) |
0.0339 (1.00) |
0.00687 (1.00) |
0.00263 (1.00) |
0.0392 (1.00) |
Del Peak 13(5q11 2) | 0 (0%) | 446 |
0.0006 (0.42) |
0.00466 (1.00) |
3.45e-11 (2.9e-08) |
0.00121 (0.81) |
0.0205 (1.00) |
0.547 (1.00) |
0.0312 (1.00) |
0.0203 (1.00) |
0.839 (1.00) |
0.0282 (1.00) |
6.68e-06 (0.00521) |
0.00364 (1.00) |
Del Peak 26(10q25 2) | 0 (0%) | 447 |
0.318 (1.00) |
0.162 (1.00) |
6.62e-09 (5.45e-06) |
0.0399 (1.00) |
0.00431 (1.00) |
0.245 (1.00) |
0.00163 (1.00) |
0.000241 (0.172) |
0.991 (1.00) |
0.00305 (1.00) |
0.00155 (1.00) |
0.036 (1.00) |
Del Peak 44(19p13 3) | 0 (0%) | 496 |
0.117 (1.00) |
0.151 (1.00) |
2.61e-05 (0.0198) |
0.657 (1.00) |
0.88 (1.00) |
0.666 (1.00) |
0.371 (1.00) |
0.317 (1.00) |
0.517 (1.00) |
9.99e-05 (0.0736) |
0.0206 (1.00) |
0.0148 (1.00) |
Del Peak 46(20p12 1) | 0 (0%) | 408 |
0.0197 (1.00) |
0.0203 (1.00) |
6.56e-10 (5.49e-07) |
1.27e-05 (0.00984) |
0.741 (1.00) |
0.00712 (1.00) |
0.0251 (1.00) |
0.00489 (1.00) |
0.0873 (1.00) |
0.103 (1.00) |
0.0964 (1.00) |
0.0827 (1.00) |
Del Peak 47(20p12 1) | 0 (0%) | 408 |
0.0197 (1.00) |
0.0203 (1.00) |
6.56e-10 (5.49e-07) |
1.27e-05 (0.00984) |
0.741 (1.00) |
0.00712 (1.00) |
0.0251 (1.00) |
0.00489 (1.00) |
0.0873 (1.00) |
0.103 (1.00) |
0.0964 (1.00) |
0.0827 (1.00) |
Del Peak 48(21q11 2) | 0 (0%) | 389 |
0.0224 (1.00) |
0.0216 (1.00) |
5.74e-08 (4.68e-05) |
0.00779 (1.00) |
0.574 (1.00) |
0.213 (1.00) |
0.00148 (0.986) |
0.00401 (1.00) |
0.0413 (1.00) |
0.336 (1.00) |
0.00022 (0.158) |
0.0832 (1.00) |
Del Peak 49(22q13 32) | 0 (0%) | 378 |
0.00476 (1.00) |
0.00578 (1.00) |
1.15e-13 (9.93e-11) |
0.0165 (1.00) |
0.469 (1.00) |
0.617 (1.00) |
0.046 (1.00) |
0.029 (1.00) |
0.936 (1.00) |
0.638 (1.00) |
0.000177 (0.128) |
0.502 (1.00) |
Amp Peak 1(1q31 1) | 0 (0%) | 452 |
0.584 (1.00) |
0.308 (1.00) |
1.38e-05 (0.0106) |
0.476 (1.00) |
0.369 (1.00) |
0.289 (1.00) |
0.89 (1.00) |
0.134 (1.00) |
0.441 (1.00) |
0.61 (1.00) |
0.0229 (1.00) |
0.962 (1.00) |
Amp Peak 5(6p21 1) | 0 (0%) | 440 |
0.0224 (1.00) |
0.00184 (1.00) |
8.62e-15 (7.5e-12) |
0.122 (1.00) |
0.575 (1.00) |
0.369 (1.00) |
0.0351 (1.00) |
0.0743 (1.00) |
0.252 (1.00) |
0.216 (1.00) |
0.00588 (1.00) |
0.206 (1.00) |
Amp Peak 7(8p11 23) | 0 (0%) | 387 |
0.396 (1.00) |
0.0486 (1.00) |
8.55e-14 (7.37e-11) |
0.373 (1.00) |
0.732 (1.00) |
0.5 (1.00) |
0.109 (1.00) |
0.142 (1.00) |
0.0174 (1.00) |
0.139 (1.00) |
0.103 (1.00) |
0.202 (1.00) |
Amp Peak 8(8p11 21) | 0 (0%) | 345 |
0.173 (1.00) |
0.00854 (1.00) |
5.41e-25 (4.83e-22) |
0.279 (1.00) |
0.7 (1.00) |
0.394 (1.00) |
0.0435 (1.00) |
0.158 (1.00) |
0.103 (1.00) |
0.147 (1.00) |
0.446 (1.00) |
0.399 (1.00) |
Amp Peak 21(19p13 2) | 0 (0%) | 489 |
0.108 (1.00) |
0.437 (1.00) |
2.1e-07 (0.000169) |
0.0101 (1.00) |
0.663 (1.00) |
0.39 (1.00) |
0.0592 (1.00) |
0.165 (1.00) |
0.232 (1.00) |
0.219 (1.00) |
0.155 (1.00) |
0.106 (1.00) |
Amp Peak 22(19q12) | 0 (0%) | 465 |
0.0281 (1.00) |
0.039 (1.00) |
7.1e-08 (5.77e-05) |
0.129 (1.00) |
0.0809 (1.00) |
0.326 (1.00) |
0.0514 (1.00) |
0.145 (1.00) |
0.352 (1.00) |
0.903 (1.00) |
0.294 (1.00) |
0.257 (1.00) |
Amp Peak 27(Xq28) | 0 (0%) | 465 |
0.436 (1.00) |
0.884 (1.00) |
7.38e-05 (0.0547) |
0.0816 (1.00) |
0.00174 (1.00) |
0.0093 (1.00) |
0.095 (1.00) |
0.0257 (1.00) |
0.913 (1.00) |
0.972 (1.00) |
0.0397 (1.00) |
0.596 (1.00) |
Del Peak 3(1p13 2) | 0 (0%) | 430 |
0.288 (1.00) |
0.129 (1.00) |
7.04e-09 (5.79e-06) |
0.0109 (1.00) |
0.567 (1.00) |
0.702 (1.00) |
0.00632 (1.00) |
0.00264 (1.00) |
0.654 (1.00) |
0.382 (1.00) |
0.038 (1.00) |
0.131 (1.00) |
Del Peak 14(5q22 2) | 0 (0%) | 414 |
0.00106 (0.72) |
0.0314 (1.00) |
6.39e-10 (5.35e-07) |
0.072 (1.00) |
0.17 (1.00) |
0.922 (1.00) |
0.11 (1.00) |
0.153 (1.00) |
0.52 (1.00) |
0.0214 (1.00) |
0.000914 (0.624) |
0.0518 (1.00) |
Del Peak 21(8q11 1) | 0 (0%) | 544 |
0.58 (1.00) |
0.557 (1.00) |
0.000212 (0.152) |
0.565 (1.00) |
0.344 (1.00) |
0.568 (1.00) |
0.155 (1.00) |
0.137 (1.00) |
0.128 (1.00) |
0.11 (1.00) |
0.519 (1.00) |
0.453 (1.00) |
Del Peak 23(10p15 3) | 0 (0%) | 486 |
0.232 (1.00) |
0.169 (1.00) |
7.77e-06 (0.00604) |
0.0283 (1.00) |
0.0205 (1.00) |
0.158 (1.00) |
0.0241 (1.00) |
0.000661 (0.462) |
0.704 (1.00) |
0.289 (1.00) |
0.0621 (1.00) |
0.0143 (1.00) |
Del Peak 24(10q21 1) | 0 (0%) | 469 |
0.171 (1.00) |
0.12 (1.00) |
8.52e-10 (7.1e-07) |
0.0993 (1.00) |
0.0728 (1.00) |
0.133 (1.00) |
0.0164 (1.00) |
0.0203 (1.00) |
0.754 (1.00) |
0.301 (1.00) |
0.0233 (1.00) |
0.252 (1.00) |
Del Peak 25(10q23 31) | 0 (0%) | 441 |
0.136 (1.00) |
0.52 (1.00) |
4.43e-07 (0.000354) |
0.157 (1.00) |
0.061 (1.00) |
0.242 (1.00) |
0.00214 (1.00) |
0.00417 (1.00) |
0.723 (1.00) |
0.0133 (1.00) |
0.000965 (0.656) |
0.00806 (1.00) |
Del Peak 28(12p13 1) | 0 (0%) | 510 |
0.00599 (1.00) |
0.0142 (1.00) |
7.01e-10 (5.85e-07) |
0.389 (1.00) |
0.892 (1.00) |
0.732 (1.00) |
0.423 (1.00) |
0.487 (1.00) |
0.695 (1.00) |
0.376 (1.00) |
0.0192 (1.00) |
0.168 (1.00) |
Del Peak 29(12q21 31) | 0 (0%) | 510 |
0.0629 (1.00) |
0.0677 (1.00) |
2.72e-08 (2.22e-05) |
0.144 (1.00) |
0.574 (1.00) |
0.591 (1.00) |
0.0277 (1.00) |
0.00261 (1.00) |
0.718 (1.00) |
0.979 (1.00) |
0.0793 (1.00) |
0.0291 (1.00) |
Del Peak 45(19q13 43) | 0 (0%) | 521 |
0.72 (1.00) |
0.219 (1.00) |
9.24e-05 (0.0684) |
0.298 (1.00) |
0.165 (1.00) |
0.937 (1.00) |
0.477 (1.00) |
0.143 (1.00) |
0.225 (1.00) |
0.13 (1.00) |
0.121 (1.00) |
0.577 (1.00) |
Amp Peak 4(5q22 3) | 0 (0%) | 529 |
0.565 (1.00) |
0.887 (1.00) |
0.00619 (1.00) |
0.243 (1.00) |
0.662 (1.00) |
0.815 (1.00) |
0.15 (1.00) |
0.0205 (1.00) |
0.459 (1.00) |
0.314 (1.00) |
0.171 (1.00) |
0.909 (1.00) |
Amp Peak 11(10q22 3) | 0 (0%) | 553 |
1 (1.00) |
0.182 (1.00) |
0.779 (1.00) |
0.616 (1.00) |
0.297 (1.00) |
0.85 (1.00) |
0.779 (1.00) |
0.206 (1.00) |
0.435 (1.00) |
0.563 (1.00) |
0.00602 (1.00) |
0.482 (1.00) |
Amp Peak 13(12p13 32) | 0 (0%) | 445 |
0.556 (1.00) |
0.787 (1.00) |
0.104 (1.00) |
0.0491 (1.00) |
0.478 (1.00) |
0.813 (1.00) |
0.817 (1.00) |
0.888 (1.00) |
0.668 (1.00) |
0.517 (1.00) |
0.443 (1.00) |
0.311 (1.00) |
Amp Peak 17(15q26 1) | 0 (0%) | 545 |
0.527 (1.00) |
0.0629 (1.00) |
0.0709 (1.00) |
0.77 (1.00) |
0.0985 (1.00) |
0.276 (1.00) |
0.188 (1.00) |
0.686 (1.00) |
0.628 (1.00) |
1 (1.00) |
0.771 (1.00) |
1 (1.00) |
Del Peak 4(2p12) | 0 (0%) | 569 |
1 (1.00) |
0.81 (1.00) |
0.00169 (1.00) |
0.00775 (1.00) |
0.296 (1.00) |
1 (1.00) |
0.74 (1.00) |
0.732 (1.00) |
0.0108 (1.00) |
0.0615 (1.00) |
1 (1.00) |
0.705 (1.00) |
Del Peak 5(2q22 1) | 0 (0%) | 555 |
0.926 (1.00) |
0.311 (1.00) |
0.172 (1.00) |
0.9 (1.00) |
0.339 (1.00) |
0.901 (1.00) |
0.248 (1.00) |
0.591 (1.00) |
0.58 (1.00) |
0.121 (1.00) |
0.71 (1.00) |
0.916 (1.00) |
Del Peak 6(2q37 2) | 0 (0%) | 559 |
0.911 (1.00) |
0.863 (1.00) |
0.539 (1.00) |
0.886 (1.00) |
0.924 (1.00) |
0.162 (1.00) |
0.372 (1.00) |
0.112 (1.00) |
0.613 (1.00) |
0.37 (1.00) |
0.208 (1.00) |
0.393 (1.00) |
Del Peak 7(3p26 3) | 0 (0%) | 503 |
0.358 (1.00) |
0.753 (1.00) |
0.0414 (1.00) |
0.354 (1.00) |
0.562 (1.00) |
0.824 (1.00) |
0.259 (1.00) |
0.769 (1.00) |
0.692 (1.00) |
0.135 (1.00) |
0.0382 (1.00) |
0.106 (1.00) |
Del Peak 8(3p14 2) | 0 (0%) | 482 |
0.62 (1.00) |
0.991 (1.00) |
0.614 (1.00) |
0.623 (1.00) |
0.501 (1.00) |
0.674 (1.00) |
0.963 (1.00) |
0.795 (1.00) |
0.261 (1.00) |
0.153 (1.00) |
0.0947 (1.00) |
0.754 (1.00) |
Del Peak 9(3q26 31) | 0 (0%) | 530 |
0.544 (1.00) |
0.788 (1.00) |
0.0634 (1.00) |
0.532 (1.00) |
0.331 (1.00) |
0.51 (1.00) |
0.592 (1.00) |
0.583 (1.00) |
0.229 (1.00) |
0.402 (1.00) |
0.379 (1.00) |
0.0396 (1.00) |
Del Peak 15(6p25 3) | 0 (0%) | 511 |
0.907 (1.00) |
0.553 (1.00) |
0.4 (1.00) |
0.318 (1.00) |
0.0472 (1.00) |
0.94 (1.00) |
0.5 (1.00) |
0.528 (1.00) |
0.641 (1.00) |
0.868 (1.00) |
0.397 (1.00) |
0.425 (1.00) |
Del Peak 16(6q26) | 0 (0%) | 499 |
0.777 (1.00) |
0.331 (1.00) |
0.373 (1.00) |
0.863 (1.00) |
0.0471 (1.00) |
0.451 (1.00) |
0.687 (1.00) |
0.866 (1.00) |
0.423 (1.00) |
0.612 (1.00) |
0.424 (1.00) |
0.316 (1.00) |
Del Peak 17(7q31 1) | 0 (0%) | 574 |
0.292 (1.00) |
0.933 (1.00) |
1 (1.00) |
1 (1.00) |
0.873 (1.00) |
0.273 (1.00) |
0.712 (1.00) |
1 (1.00) |
0.158 (1.00) |
0.488 (1.00) |
0.257 (1.00) |
0.761 (1.00) |
Del Peak 22(9p24 2) | 0 (0%) | 510 |
0.452 (1.00) |
0.299 (1.00) |
0.0068 (1.00) |
0.0481 (1.00) |
0.564 (1.00) |
0.592 (1.00) |
0.233 (1.00) |
0.341 (1.00) |
0.27 (1.00) |
0.0851 (1.00) |
0.0434 (1.00) |
0.26 (1.00) |
Del Peak 27(11q22 3) | 0 (0%) | 484 |
0.478 (1.00) |
0.0658 (1.00) |
0.0743 (1.00) |
0.075 (1.00) |
0.26 (1.00) |
0.147 (1.00) |
1 (1.00) |
0.963 (1.00) |
0.818 (1.00) |
0.742 (1.00) |
0.268 (1.00) |
0.545 (1.00) |
Del Peak 36(16p13 3) | 0 (0%) | 530 |
0.139 (1.00) |
0.119 (1.00) |
0.808 (1.00) |
0.617 (1.00) |
0.49 (1.00) |
0.789 (1.00) |
0.444 (1.00) |
0.117 (1.00) |
0.638 (1.00) |
0.233 (1.00) |
0.734 (1.00) |
0.544 (1.00) |
Del Peak 37(16q23 1) | 0 (0%) | 515 |
0.0439 (1.00) |
0.00729 (1.00) |
0.311 (1.00) |
0.252 (1.00) |
0.221 (1.00) |
0.925 (1.00) |
0.408 (1.00) |
0.567 (1.00) |
0.726 (1.00) |
0.495 (1.00) |
0.556 (1.00) |
0.361 (1.00) |
Del Peak 39(17q24 3) | 0 (0%) | 503 |
1 (1.00) |
0.224 (1.00) |
0.0198 (1.00) |
0.548 (1.00) |
0.947 (1.00) |
0.523 (1.00) |
0.371 (1.00) |
0.713 (1.00) |
0.83 (1.00) |
0.524 (1.00) |
0.0331 (1.00) |
0.671 (1.00) |
P value = 1.38e-05 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
AMP PEAK 1(1Q31.1) CNV | 56 | 34 | 39 | 8 |
AMP PEAK 1(1Q31.1) WILD-TYPE | 130 | 207 | 108 | 7 |
P value = 0.000319 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
AMP PEAK 2(2Q33.1) CNV | 13 | 3 | 6 | 18 |
AMP PEAK 2(2Q33.1) WILD-TYPE | 29 | 47 | 57 | 42 |
P value = 0.00034 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
AMP PEAK 2(2Q33.1) CNV | 53 | 33 | 35 | 6 |
AMP PEAK 2(2Q33.1) WILD-TYPE | 133 | 208 | 112 | 9 |
P value = 2.48e-06 (Fisher's exact test), Q value = 0.002
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
AMP PEAK 3(5P12) CNV | 51 | 22 | 31 | 5 |
AMP PEAK 3(5P12) WILD-TYPE | 135 | 219 | 116 | 10 |
P value = 5.42e-05 (Fisher's exact test), Q value = 0.041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 109 | 85 |
AMP PEAK 3(5P12) CNV | 26 | 6 | 19 |
AMP PEAK 3(5P12) WILD-TYPE | 74 | 103 | 66 |
P value = 8.62e-15 (Fisher's exact test), Q value = 7.5e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
AMP PEAK 5(6P21.1) CNV | 78 | 22 | 45 | 4 |
AMP PEAK 5(6P21.1) WILD-TYPE | 108 | 219 | 102 | 11 |
P value = 5.48e-20 (Fisher's exact test), Q value = 4.9e-17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
AMP PEAK 6(7P21.3) CNV | 145 | 86 | 101 | 12 |
AMP PEAK 6(7P21.3) WILD-TYPE | 41 | 155 | 46 | 3 |
P value = 3.32e-06 (Fisher's exact test), Q value = 0.0026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 156 | 116 | 91 |
AMP PEAK 6(7P21.3) CNV | 121 | 58 | 51 |
AMP PEAK 6(7P21.3) WILD-TYPE | 35 | 58 | 40 |
P value = 3.18e-08 (Fisher's exact test), Q value = 2.6e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 103 | 116 |
AMP PEAK 6(7P21.3) CNV | 67 | 81 | 49 |
AMP PEAK 6(7P21.3) WILD-TYPE | 28 | 22 | 67 |
P value = 2.22e-07 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 94 | 136 |
AMP PEAK 6(7P21.3) CNV | 66 | 69 | 62 |
AMP PEAK 6(7P21.3) WILD-TYPE | 18 | 25 | 74 |
P value = 3.58e-06 (Fisher's exact test), Q value = 0.0028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 109 | 85 |
AMP PEAK 6(7P21.3) CNV | 72 | 49 | 65 |
AMP PEAK 6(7P21.3) WILD-TYPE | 28 | 60 | 20 |
P value = 8.55e-14 (Fisher's exact test), Q value = 7.4e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
AMP PEAK 7(8P11.23) CNV | 57 | 50 | 85 | 10 |
AMP PEAK 7(8P11.23) WILD-TYPE | 129 | 191 | 62 | 5 |
P value = 5.41e-25 (Fisher's exact test), Q value = 4.8e-22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
AMP PEAK 8(8P11.21) CNV | 69 | 54 | 111 | 10 |
AMP PEAK 8(8P11.21) WILD-TYPE | 117 | 187 | 36 | 5 |
P value = 4.53e-44 (Fisher's exact test), Q value = 4.1e-41
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
AMP PEAK 9(8Q12.1) CNV | 94 | 68 | 141 | 12 |
AMP PEAK 9(8Q12.1) WILD-TYPE | 92 | 173 | 6 | 3 |
P value = 2.55e-05 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 103 | 116 |
AMP PEAK 9(8Q12.1) CNV | 59 | 70 | 45 |
AMP PEAK 9(8Q12.1) WILD-TYPE | 36 | 33 | 71 |
P value = 0.000227 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
AMP PEAK 10(8Q24.21) CNV | 30 | 18 | 31 | 43 |
AMP PEAK 10(8Q24.21) WILD-TYPE | 12 | 32 | 32 | 17 |
P value = 2.31e-45 (Fisher's exact test), Q value = 2.1e-42
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
AMP PEAK 10(8Q24.21) CNV | 115 | 80 | 146 | 11 |
AMP PEAK 10(8Q24.21) WILD-TYPE | 71 | 161 | 1 | 4 |
P value = 1.63e-05 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 103 | 116 |
AMP PEAK 10(8Q24.21) CNV | 63 | 77 | 52 |
AMP PEAK 10(8Q24.21) WILD-TYPE | 32 | 26 | 64 |
P value = 0.000202 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
AMP PEAK 12(11P15.5) CNV | 3 | 20 | 24 | 4 |
AMP PEAK 12(11P15.5) WILD-TYPE | 40 | 42 | 45 | 37 |
P value = 4.8e-05 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
AMP PEAK 12(11P15.5) CNV | 50 | 32 | 44 | 6 |
AMP PEAK 12(11P15.5) WILD-TYPE | 136 | 209 | 103 | 9 |
P value = 9.96e-05 (Fisher's exact test), Q value = 0.073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 103 | 116 |
AMP PEAK 12(11P15.5) CNV | 21 | 35 | 12 |
AMP PEAK 12(11P15.5) WILD-TYPE | 74 | 68 | 104 |
P value = 5.09e-05 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 94 | 136 |
AMP PEAK 12(11P15.5) CNV | 24 | 30 | 14 |
AMP PEAK 12(11P15.5) WILD-TYPE | 60 | 64 | 122 |
P value = 0.000195 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 109 | 85 |
AMP PEAK 12(11P15.5) CNV | 30 | 10 | 23 |
AMP PEAK 12(11P15.5) WILD-TYPE | 70 | 99 | 62 |
P value = 2.57e-06 (Fisher's exact test), Q value = 0.002
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 105 | 115 | 41 |
AMP PEAK 12(11P15.5) CNV | 20 | 19 | 17 | 7 |
AMP PEAK 12(11P15.5) WILD-TYPE | 13 | 86 | 98 | 34 |
P value = 1.92e-07 (Fisher's exact test), Q value = 0.00015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
AMP PEAK 14(13Q12.13) CNV | 19 | 48 | 57 | 16 |
AMP PEAK 14(13Q12.13) WILD-TYPE | 24 | 14 | 12 | 25 |
P value = 4.12e-06 (Fisher's exact test), Q value = 0.0032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
AMP PEAK 14(13Q12.13) CNV | 36 | 36 | 25 | 43 |
AMP PEAK 14(13Q12.13) WILD-TYPE | 6 | 14 | 38 | 17 |
P value = 5.16e-41 (Fisher's exact test), Q value = 4.7e-38
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
AMP PEAK 14(13Q12.13) CNV | 180 | 91 | 100 | 10 |
AMP PEAK 14(13Q12.13) WILD-TYPE | 6 | 150 | 47 | 5 |
P value = 1.05e-11 (Fisher's exact test), Q value = 8.9e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 156 | 116 | 91 |
AMP PEAK 14(13Q12.13) CNV | 133 | 56 | 49 |
AMP PEAK 14(13Q12.13) WILD-TYPE | 23 | 60 | 42 |
P value = 1.94e-07 (Fisher's exact test), Q value = 0.00016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 103 | 116 |
AMP PEAK 14(13Q12.13) CNV | 66 | 84 | 54 |
AMP PEAK 14(13Q12.13) WILD-TYPE | 29 | 19 | 62 |
P value = 1.13e-08 (Fisher's exact test), Q value = 9.3e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 94 | 136 |
AMP PEAK 14(13Q12.13) CNV | 67 | 74 | 63 |
AMP PEAK 14(13Q12.13) WILD-TYPE | 17 | 20 | 73 |
P value = 9.89e-10 (Fisher's exact test), Q value = 8.2e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 109 | 85 |
AMP PEAK 14(13Q12.13) CNV | 85 | 49 | 64 |
AMP PEAK 14(13Q12.13) WILD-TYPE | 15 | 60 | 21 |
P value = 4.65e-06 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
AMP PEAK 15(13Q12.2) CNV | 19 | 47 | 55 | 17 |
AMP PEAK 15(13Q12.2) WILD-TYPE | 24 | 15 | 14 | 24 |
P value = 5.25e-05 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
AMP PEAK 15(13Q12.2) CNV | 35 | 35 | 26 | 42 |
AMP PEAK 15(13Q12.2) WILD-TYPE | 7 | 15 | 37 | 18 |
P value = 6.93e-43 (Fisher's exact test), Q value = 6.3e-40
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
AMP PEAK 15(13Q12.2) CNV | 180 | 87 | 99 | 10 |
AMP PEAK 15(13Q12.2) WILD-TYPE | 6 | 154 | 48 | 5 |
P value = 2.31e-12 (Fisher's exact test), Q value = 2e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 156 | 116 | 91 |
AMP PEAK 15(13Q12.2) CNV | 133 | 54 | 49 |
AMP PEAK 15(13Q12.2) WILD-TYPE | 23 | 62 | 42 |
P value = 2.74e-07 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 103 | 116 |
AMP PEAK 15(13Q12.2) CNV | 65 | 83 | 53 |
AMP PEAK 15(13Q12.2) WILD-TYPE | 30 | 20 | 63 |
P value = 4.66e-09 (Fisher's exact test), Q value = 3.8e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 94 | 136 |
AMP PEAK 15(13Q12.2) CNV | 67 | 73 | 61 |
AMP PEAK 15(13Q12.2) WILD-TYPE | 17 | 21 | 75 |
P value = 2.74e-09 (Fisher's exact test), Q value = 2.3e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 109 | 85 |
AMP PEAK 15(13Q12.2) CNV | 83 | 48 | 64 |
AMP PEAK 15(13Q12.2) WILD-TYPE | 17 | 61 | 21 |
P value = 9.73e-06 (Fisher's exact test), Q value = 0.0075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
AMP PEAK 16(13Q22.1) CNV | 19 | 47 | 54 | 17 |
AMP PEAK 16(13Q22.1) WILD-TYPE | 24 | 15 | 15 | 24 |
P value = 0.000193 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
AMP PEAK 16(13Q22.1) CNV | 33 | 35 | 26 | 43 |
AMP PEAK 16(13Q22.1) WILD-TYPE | 9 | 15 | 37 | 17 |
P value = 2.14e-39 (Fisher's exact test), Q value = 1.9e-36
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
AMP PEAK 16(13Q22.1) CNV | 179 | 92 | 99 | 11 |
AMP PEAK 16(13Q22.1) WILD-TYPE | 7 | 149 | 48 | 4 |
P value = 3.91e-10 (Fisher's exact test), Q value = 3.3e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 156 | 116 | 91 |
AMP PEAK 16(13Q22.1) CNV | 132 | 59 | 50 |
AMP PEAK 16(13Q22.1) WILD-TYPE | 24 | 57 | 41 |
P value = 4.91e-07 (Fisher's exact test), Q value = 0.00039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 103 | 116 |
AMP PEAK 16(13Q22.1) CNV | 64 | 85 | 56 |
AMP PEAK 16(13Q22.1) WILD-TYPE | 31 | 18 | 60 |
P value = 2.12e-08 (Fisher's exact test), Q value = 1.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 94 | 136 |
AMP PEAK 16(13Q22.1) CNV | 65 | 76 | 64 |
AMP PEAK 16(13Q22.1) WILD-TYPE | 19 | 18 | 72 |
P value = 1.21e-07 (Fisher's exact test), Q value = 9.8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 109 | 85 |
AMP PEAK 16(13Q22.1) CNV | 83 | 53 | 65 |
AMP PEAK 16(13Q22.1) WILD-TYPE | 17 | 56 | 20 |
P value = 1.6e-20 (Fisher's exact test), Q value = 1.4e-17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
AMP PEAK 18(16P11.2) CNV | 92 | 21 | 45 | 4 |
AMP PEAK 18(16P11.2) WILD-TYPE | 94 | 220 | 102 | 11 |
P value = 1.37e-05 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 103 | 116 |
AMP PEAK 18(16P11.2) CNV | 29 | 36 | 12 |
AMP PEAK 18(16P11.2) WILD-TYPE | 66 | 67 | 104 |
P value = 2.59e-05 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 94 | 136 |
AMP PEAK 18(16P11.2) CNV | 32 | 28 | 17 |
AMP PEAK 18(16P11.2) WILD-TYPE | 52 | 66 | 119 |
P value = 8.55e-10 (Fisher's exact test), Q value = 7.1e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
AMP PEAK 19(17Q12) CNV | 58 | 29 | 58 | 2 |
AMP PEAK 19(17Q12) WILD-TYPE | 128 | 212 | 89 | 13 |
P value = 2.93e-05 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 94 | 136 |
AMP PEAK 19(17Q12) CNV | 25 | 35 | 17 |
AMP PEAK 19(17Q12) WILD-TYPE | 59 | 59 | 119 |
P value = 1.9e-10 (Fisher's exact test), Q value = 1.6e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
AMP PEAK 20(17Q24.1) CNV | 57 | 24 | 50 | 0 |
AMP PEAK 20(17Q24.1) WILD-TYPE | 129 | 217 | 97 | 15 |
P value = 0.000341 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 156 | 116 | 91 |
AMP PEAK 20(17Q24.1) CNV | 51 | 21 | 11 |
AMP PEAK 20(17Q24.1) WILD-TYPE | 105 | 95 | 80 |
P value = 0.000186 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 94 | 136 |
AMP PEAK 20(17Q24.1) CNV | 22 | 33 | 17 |
AMP PEAK 20(17Q24.1) WILD-TYPE | 62 | 61 | 119 |
P value = 0.000148 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 211 | 95 | 232 |
AMP PEAK 20(17Q24.1) CNV | 61 | 8 | 50 |
AMP PEAK 20(17Q24.1) WILD-TYPE | 150 | 87 | 182 |
P value = 2.1e-07 (Fisher's exact test), Q value = 0.00017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
AMP PEAK 21(19P13.2) CNV | 51 | 18 | 30 | 1 |
AMP PEAK 21(19P13.2) WILD-TYPE | 135 | 223 | 117 | 14 |
P value = 7.1e-08 (Fisher's exact test), Q value = 5.8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
AMP PEAK 22(19Q12) CNV | 64 | 27 | 32 | 1 |
AMP PEAK 22(19Q12) WILD-TYPE | 122 | 214 | 115 | 14 |
P value = 1.69e-08 (Fisher's exact test), Q value = 1.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
AMP PEAK 23(20P11.23) CNV | 111 | 95 | 85 | 15 |
AMP PEAK 23(20P11.23) WILD-TYPE | 75 | 146 | 62 | 0 |
P value = 0.000164 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 103 | 116 |
AMP PEAK 23(20P11.23) CNV | 48 | 68 | 44 |
AMP PEAK 23(20P11.23) WILD-TYPE | 47 | 35 | 72 |
P value = 0.000142 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 109 | 85 |
AMP PEAK 23(20P11.23) CNV | 64 | 40 | 50 |
AMP PEAK 23(20P11.23) WILD-TYPE | 36 | 69 | 35 |
P value = 1.19e-13 (Fisher's exact test), Q value = 1e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
AMP PEAK 24(20Q11.21) CNV | 18 | 60 | 63 | 23 |
AMP PEAK 24(20Q11.21) WILD-TYPE | 25 | 2 | 6 | 18 |
P value = 9.59e-13 (Fisher's exact test), Q value = 8.2e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
AMP PEAK 24(20Q11.21) CNV | 39 | 43 | 26 | 56 |
AMP PEAK 24(20Q11.21) WILD-TYPE | 3 | 7 | 37 | 4 |
P value = 4.45e-36 (Fisher's exact test), Q value = 4e-33
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
AMP PEAK 24(20Q11.21) CNV | 184 | 124 | 126 | 15 |
AMP PEAK 24(20Q11.21) WILD-TYPE | 2 | 117 | 21 | 0 |
P value = 1.99e-18 (Fisher's exact test), Q value = 1.8e-15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 156 | 116 | 91 |
AMP PEAK 24(20Q11.21) CNV | 152 | 66 | 61 |
AMP PEAK 24(20Q11.21) WILD-TYPE | 4 | 50 | 30 |
P value = 4.46e-17 (Fisher's exact test), Q value = 3.9e-14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 103 | 116 |
AMP PEAK 24(20Q11.21) CNV | 76 | 101 | 59 |
AMP PEAK 24(20Q11.21) WILD-TYPE | 19 | 2 | 57 |
P value = 2.24e-20 (Fisher's exact test), Q value = 2e-17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 94 | 136 |
AMP PEAK 24(20Q11.21) CNV | 76 | 92 | 68 |
AMP PEAK 24(20Q11.21) WILD-TYPE | 8 | 2 | 68 |
P value = 9.09e-13 (Fisher's exact test), Q value = 7.7e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 109 | 85 |
AMP PEAK 24(20Q11.21) CNV | 94 | 59 | 75 |
AMP PEAK 24(20Q11.21) WILD-TYPE | 6 | 50 | 10 |
P value = 1.06e-14 (Fisher's exact test), Q value = 9.2e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
AMP PEAK 25(20Q12) CNV | 17 | 60 | 63 | 22 |
AMP PEAK 25(20Q12) WILD-TYPE | 26 | 2 | 6 | 19 |
P value = 4.18e-14 (Fisher's exact test), Q value = 3.6e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
AMP PEAK 25(20Q12) CNV | 39 | 43 | 24 | 56 |
AMP PEAK 25(20Q12) WILD-TYPE | 3 | 7 | 39 | 4 |
P value = 1.08e-36 (Fisher's exact test), Q value = 9.7e-34
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
AMP PEAK 25(20Q12) CNV | 184 | 124 | 128 | 15 |
AMP PEAK 25(20Q12) WILD-TYPE | 2 | 117 | 19 | 0 |
P value = 4.84e-17 (Fisher's exact test), Q value = 4.3e-14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 156 | 116 | 91 |
AMP PEAK 25(20Q12) CNV | 152 | 69 | 62 |
AMP PEAK 25(20Q12) WILD-TYPE | 4 | 47 | 29 |
P value = 1.76e-16 (Fisher's exact test), Q value = 1.5e-13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 103 | 116 |
AMP PEAK 25(20Q12) CNV | 78 | 101 | 61 |
AMP PEAK 25(20Q12) WILD-TYPE | 17 | 2 | 55 |
P value = 2.08e-19 (Fisher's exact test), Q value = 1.8e-16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 94 | 136 |
AMP PEAK 25(20Q12) CNV | 77 | 92 | 71 |
AMP PEAK 25(20Q12) WILD-TYPE | 7 | 2 | 65 |
P value = 2.72e-13 (Fisher's exact test), Q value = 2.3e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 109 | 85 |
AMP PEAK 25(20Q12) CNV | 95 | 60 | 76 |
AMP PEAK 25(20Q12) WILD-TYPE | 5 | 49 | 9 |
P value = 6.6e-05 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 105 | 115 | 41 |
AMP PEAK 25(20Q12) CNV | 31 | 84 | 77 | 39 |
AMP PEAK 25(20Q12) WILD-TYPE | 2 | 21 | 38 | 2 |
P value = 7.8e-14 (Fisher's exact test), Q value = 6.7e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
AMP PEAK 26(20Q13.32) CNV | 18 | 60 | 64 | 24 |
AMP PEAK 26(20Q13.32) WILD-TYPE | 25 | 2 | 5 | 17 |
P value = 2.02e-12 (Fisher's exact test), Q value = 1.7e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
AMP PEAK 26(20Q13.32) CNV | 39 | 44 | 27 | 56 |
AMP PEAK 26(20Q13.32) WILD-TYPE | 3 | 6 | 36 | 4 |
P value = 7.3e-37 (Fisher's exact test), Q value = 6.5e-34
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
AMP PEAK 26(20Q13.32) CNV | 184 | 125 | 130 | 15 |
AMP PEAK 26(20Q13.32) WILD-TYPE | 2 | 116 | 17 | 0 |
P value = 4.58e-16 (Fisher's exact test), Q value = 4e-13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 156 | 116 | 91 |
AMP PEAK 26(20Q13.32) CNV | 151 | 69 | 62 |
AMP PEAK 26(20Q13.32) WILD-TYPE | 5 | 47 | 29 |
P value = 1.76e-16 (Fisher's exact test), Q value = 1.5e-13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 103 | 116 |
AMP PEAK 26(20Q13.32) CNV | 78 | 101 | 61 |
AMP PEAK 26(20Q13.32) WILD-TYPE | 17 | 2 | 55 |
P value = 2.08e-19 (Fisher's exact test), Q value = 1.8e-16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 94 | 136 |
AMP PEAK 26(20Q13.32) CNV | 77 | 92 | 71 |
AMP PEAK 26(20Q13.32) WILD-TYPE | 7 | 2 | 65 |
P value = 3.19e-12 (Fisher's exact test), Q value = 2.7e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 109 | 85 |
AMP PEAK 26(20Q13.32) CNV | 94 | 61 | 76 |
AMP PEAK 26(20Q13.32) WILD-TYPE | 6 | 48 | 9 |
P value = 6.6e-05 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 105 | 115 | 41 |
AMP PEAK 26(20Q13.32) CNV | 31 | 84 | 77 | 39 |
AMP PEAK 26(20Q13.32) WILD-TYPE | 2 | 21 | 38 | 2 |
P value = 7.38e-05 (Fisher's exact test), Q value = 0.055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
AMP PEAK 27(XQ28) CNV | 48 | 30 | 44 | 2 |
AMP PEAK 27(XQ28) WILD-TYPE | 138 | 211 | 103 | 13 |
P value = 0.000114 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
DEL PEAK 1(1P36.11) CNV | 14 | 36 | 34 | 7 |
DEL PEAK 1(1P36.11) WILD-TYPE | 29 | 26 | 35 | 34 |
P value = 7.78e-13 (Fisher's exact test), Q value = 6.6e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 1(1P36.11) CNV | 100 | 53 | 59 | 12 |
DEL PEAK 1(1P36.11) WILD-TYPE | 86 | 188 | 88 | 3 |
P value = 4.56e-06 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 156 | 116 | 91 |
DEL PEAK 1(1P36.11) CNV | 78 | 25 | 29 |
DEL PEAK 1(1P36.11) WILD-TYPE | 78 | 91 | 62 |
P value = 0.000172 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 103 | 116 |
DEL PEAK 1(1P36.11) CNV | 38 | 50 | 26 |
DEL PEAK 1(1P36.11) WILD-TYPE | 57 | 53 | 90 |
P value = 0.000138 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 94 | 136 |
DEL PEAK 1(1P36.11) CNV | 41 | 41 | 32 |
DEL PEAK 1(1P36.11) WILD-TYPE | 43 | 53 | 104 |
P value = 7.12e-12 (Fisher's exact test), Q value = 6e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 2(1P33) CNV | 76 | 39 | 30 | 12 |
DEL PEAK 2(1P33) WILD-TYPE | 110 | 202 | 117 | 3 |
P value = 0.000353 (Fisher's exact test), Q value = 0.25
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 156 | 116 | 91 |
DEL PEAK 2(1P33) CNV | 56 | 17 | 25 |
DEL PEAK 2(1P33) WILD-TYPE | 100 | 99 | 66 |
P value = 7.04e-09 (Fisher's exact test), Q value = 5.8e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 3(1P13.2) CNV | 77 | 42 | 31 | 9 |
DEL PEAK 3(1P13.2) WILD-TYPE | 109 | 199 | 116 | 6 |
P value = 7.65e-14 (Fisher's exact test), Q value = 6.6e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 10(4P16.1) CNV | 91 | 43 | 41 | 12 |
DEL PEAK 10(4P16.1) WILD-TYPE | 95 | 198 | 106 | 3 |
P value = 2.3e-05 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 94 | 136 |
DEL PEAK 10(4P16.1) CNV | 40 | 31 | 25 |
DEL PEAK 10(4P16.1) WILD-TYPE | 44 | 63 | 111 |
P value = 0.00025 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 109 | 85 |
DEL PEAK 10(4P16.1) CNV | 40 | 18 | 31 |
DEL PEAK 10(4P16.1) WILD-TYPE | 60 | 91 | 54 |
P value = 2.06e-14 (Fisher's exact test), Q value = 1.8e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 11(4Q22.1) CNV | 95 | 44 | 53 | 12 |
DEL PEAK 11(4Q22.1) WILD-TYPE | 91 | 197 | 94 | 3 |
P value = 1.79e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 156 | 116 | 91 |
DEL PEAK 11(4Q22.1) CNV | 71 | 22 | 34 |
DEL PEAK 11(4Q22.1) WILD-TYPE | 85 | 94 | 57 |
P value = 2.24e-14 (Fisher's exact test), Q value = 1.9e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 12(4Q35.1) CNV | 99 | 46 | 59 | 11 |
DEL PEAK 12(4Q35.1) WILD-TYPE | 87 | 195 | 88 | 4 |
P value = 6.21e-05 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 156 | 116 | 91 |
DEL PEAK 12(4Q35.1) CNV | 71 | 24 | 37 |
DEL PEAK 12(4Q35.1) WILD-TYPE | 85 | 92 | 54 |
P value = 7.68e-05 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 109 | 85 |
DEL PEAK 12(4Q35.1) CNV | 49 | 23 | 34 |
DEL PEAK 12(4Q35.1) WILD-TYPE | 51 | 86 | 51 |
P value = 3.45e-11 (Fisher's exact test), Q value = 2.9e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 13(5Q11.2) CNV | 62 | 24 | 50 | 7 |
DEL PEAK 13(5Q11.2) WILD-TYPE | 124 | 217 | 97 | 8 |
P value = 6.68e-06 (Fisher's exact test), Q value = 0.0052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 109 | 85 |
DEL PEAK 13(5Q11.2) CNV | 35 | 10 | 26 |
DEL PEAK 13(5Q11.2) WILD-TYPE | 65 | 99 | 59 |
P value = 6.39e-10 (Fisher's exact test), Q value = 5.3e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 14(5Q22.2) CNV | 70 | 38 | 57 | 10 |
DEL PEAK 14(5Q22.2) WILD-TYPE | 116 | 203 | 90 | 5 |
P value = 3.05e-47 (Fisher's exact test), Q value = 2.8e-44
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 18(8P23.3) CNV | 118 | 36 | 121 | 2 |
DEL PEAK 18(8P23.3) WILD-TYPE | 68 | 205 | 26 | 13 |
P value = 4.19e-07 (Fisher's exact test), Q value = 0.00033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 156 | 116 | 91 |
DEL PEAK 18(8P23.3) CNV | 97 | 35 | 37 |
DEL PEAK 18(8P23.3) WILD-TYPE | 59 | 81 | 54 |
P value = 7.5e-06 (Fisher's exact test), Q value = 0.0058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 103 | 116 |
DEL PEAK 18(8P23.3) CNV | 56 | 55 | 33 |
DEL PEAK 18(8P23.3) WILD-TYPE | 39 | 48 | 83 |
P value = 2.34e-06 (Fisher's exact test), Q value = 0.0019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 94 | 136 |
DEL PEAK 18(8P23.3) CNV | 53 | 50 | 41 |
DEL PEAK 18(8P23.3) WILD-TYPE | 31 | 44 | 95 |
P value = 1.62e-05 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 109 | 85 |
DEL PEAK 18(8P23.3) CNV | 60 | 32 | 45 |
DEL PEAK 18(8P23.3) WILD-TYPE | 40 | 77 | 40 |
P value = 0.000258 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
DEL PEAK 19(8P23.2) CNV | 17 | 42 | 37 | 11 |
DEL PEAK 19(8P23.2) WILD-TYPE | 26 | 20 | 32 | 30 |
P value = 0.000146 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
DEL PEAK 19(8P23.2) CNV | 26 | 17 | 23 | 41 |
DEL PEAK 19(8P23.2) WILD-TYPE | 16 | 33 | 40 | 19 |
P value = 3.44e-51 (Fisher's exact test), Q value = 3.1e-48
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 19(8P23.2) CNV | 119 | 33 | 123 | 2 |
DEL PEAK 19(8P23.2) WILD-TYPE | 67 | 208 | 24 | 13 |
P value = 1.01e-07 (Fisher's exact test), Q value = 8.2e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 156 | 116 | 91 |
DEL PEAK 19(8P23.2) CNV | 98 | 34 | 37 |
DEL PEAK 19(8P23.2) WILD-TYPE | 58 | 82 | 54 |
P value = 2.6e-06 (Fisher's exact test), Q value = 0.0021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 103 | 116 |
DEL PEAK 19(8P23.2) CNV | 56 | 56 | 32 |
DEL PEAK 19(8P23.2) WILD-TYPE | 39 | 47 | 84 |
P value = 8.32e-07 (Fisher's exact test), Q value = 0.00066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 94 | 136 |
DEL PEAK 19(8P23.2) CNV | 55 | 48 | 41 |
DEL PEAK 19(8P23.2) WILD-TYPE | 29 | 46 | 95 |
P value = 7.67e-06 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 109 | 85 |
DEL PEAK 19(8P23.2) CNV | 61 | 32 | 46 |
DEL PEAK 19(8P23.2) WILD-TYPE | 39 | 77 | 39 |
P value = 5.79e-54 (Fisher's exact test), Q value = 5.3e-51
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 20(8P22) CNV | 125 | 36 | 127 | 2 |
DEL PEAK 20(8P22) WILD-TYPE | 61 | 205 | 20 | 13 |
P value = 7.97e-08 (Fisher's exact test), Q value = 6.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 156 | 116 | 91 |
DEL PEAK 20(8P22) CNV | 103 | 38 | 38 |
DEL PEAK 20(8P22) WILD-TYPE | 53 | 78 | 53 |
P value = 1.15e-05 (Fisher's exact test), Q value = 0.0089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 103 | 116 |
DEL PEAK 20(8P22) CNV | 57 | 59 | 36 |
DEL PEAK 20(8P22) WILD-TYPE | 38 | 44 | 80 |
P value = 1.49e-06 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 94 | 136 |
DEL PEAK 20(8P22) CNV | 57 | 50 | 45 |
DEL PEAK 20(8P22) WILD-TYPE | 27 | 44 | 91 |
P value = 2.24e-05 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 109 | 85 |
DEL PEAK 20(8P22) CNV | 63 | 36 | 49 |
DEL PEAK 20(8P22) WILD-TYPE | 37 | 73 | 36 |
P value = 0.000212 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 21(8Q11.1) CNV | 28 | 12 | 5 | 0 |
DEL PEAK 21(8Q11.1) WILD-TYPE | 158 | 229 | 142 | 15 |
P value = 7.77e-06 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 23(10P15.3) CNV | 40 | 22 | 34 | 7 |
DEL PEAK 23(10P15.3) WILD-TYPE | 146 | 219 | 113 | 8 |
P value = 8.52e-10 (Fisher's exact test), Q value = 7.1e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 24(10Q21.1) CNV | 49 | 21 | 41 | 9 |
DEL PEAK 24(10Q21.1) WILD-TYPE | 137 | 220 | 106 | 6 |
P value = 4.43e-07 (Fisher's exact test), Q value = 0.00035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 25(10Q23.31) CNV | 54 | 35 | 50 | 9 |
DEL PEAK 25(10Q23.31) WILD-TYPE | 132 | 206 | 97 | 6 |
P value = 6.62e-09 (Fisher's exact test), Q value = 5.4e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 26(10Q25.2) CNV | 58 | 30 | 44 | 10 |
DEL PEAK 26(10Q25.2) WILD-TYPE | 128 | 211 | 103 | 5 |
P value = 0.000241 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 94 | 136 |
DEL PEAK 26(10Q25.2) CNV | 31 | 23 | 18 |
DEL PEAK 26(10Q25.2) WILD-TYPE | 53 | 71 | 118 |
P value = 7.01e-10 (Fisher's exact test), Q value = 5.8e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 28(12P13.1) CNV | 42 | 9 | 22 | 6 |
DEL PEAK 28(12P13.1) WILD-TYPE | 144 | 232 | 125 | 9 |
P value = 2.72e-08 (Fisher's exact test), Q value = 2.2e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 29(12Q21.31) CNV | 40 | 11 | 22 | 6 |
DEL PEAK 29(12Q21.31) WILD-TYPE | 146 | 230 | 125 | 9 |
P value = 3.66e-05 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
DEL PEAK 30(14Q11.2) CNV | 8 | 31 | 32 | 6 |
DEL PEAK 30(14Q11.2) WILD-TYPE | 35 | 31 | 37 | 35 |
P value = 5.71e-06 (Fisher's exact test), Q value = 0.0045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
DEL PEAK 30(14Q11.2) CNV | 21 | 21 | 7 | 28 |
DEL PEAK 30(14Q11.2) WILD-TYPE | 21 | 29 | 56 | 32 |
P value = 1.81e-40 (Fisher's exact test), Q value = 1.6e-37
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 30(14Q11.2) CNV | 132 | 30 | 25 | 6 |
DEL PEAK 30(14Q11.2) WILD-TYPE | 54 | 211 | 122 | 9 |
P value = 5e-05 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 156 | 116 | 91 |
DEL PEAK 30(14Q11.2) CNV | 68 | 22 | 25 |
DEL PEAK 30(14Q11.2) WILD-TYPE | 88 | 94 | 66 |
P value = 4e-06 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 103 | 116 |
DEL PEAK 30(14Q11.2) CNV | 25 | 52 | 23 |
DEL PEAK 30(14Q11.2) WILD-TYPE | 70 | 51 | 93 |
P value = 9.43e-05 (Fisher's exact test), Q value = 0.07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 94 | 136 |
DEL PEAK 30(14Q11.2) CNV | 35 | 39 | 26 |
DEL PEAK 30(14Q11.2) WILD-TYPE | 49 | 55 | 110 |
P value = 7.63e-07 (Fisher's exact test), Q value = 0.00061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 109 | 85 |
DEL PEAK 30(14Q11.2) CNV | 49 | 17 | 31 |
DEL PEAK 30(14Q11.2) WILD-TYPE | 51 | 92 | 54 |
P value = 0.000257 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
DEL PEAK 31(14Q31.1) CNV | 23 | 19 | 11 | 28 |
DEL PEAK 31(14Q31.1) WILD-TYPE | 19 | 31 | 52 | 32 |
P value = 4.82e-38 (Fisher's exact test), Q value = 4.3e-35
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 31(14Q31.1) CNV | 132 | 34 | 26 | 6 |
DEL PEAK 31(14Q31.1) WILD-TYPE | 54 | 207 | 121 | 9 |
P value = 0.000105 (Fisher's exact test), Q value = 0.077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 156 | 116 | 91 |
DEL PEAK 31(14Q31.1) CNV | 68 | 23 | 25 |
DEL PEAK 31(14Q31.1) WILD-TYPE | 88 | 93 | 66 |
P value = 1.56e-05 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 103 | 116 |
DEL PEAK 31(14Q31.1) CNV | 24 | 49 | 22 |
DEL PEAK 31(14Q31.1) WILD-TYPE | 71 | 54 | 94 |
P value = 0.000244 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 94 | 136 |
DEL PEAK 31(14Q31.1) CNV | 32 | 38 | 25 |
DEL PEAK 31(14Q31.1) WILD-TYPE | 52 | 56 | 111 |
P value = 3.16e-07 (Fisher's exact test), Q value = 0.00025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 109 | 85 |
DEL PEAK 31(14Q31.1) CNV | 49 | 16 | 30 |
DEL PEAK 31(14Q31.1) WILD-TYPE | 51 | 93 | 55 |
P value = 1.62e-37 (Fisher's exact test), Q value = 1.5e-34
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 32(14Q31.1) CNV | 133 | 35 | 28 | 6 |
DEL PEAK 32(14Q31.1) WILD-TYPE | 53 | 206 | 119 | 9 |
P value = 4.57e-05 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 156 | 116 | 91 |
DEL PEAK 32(14Q31.1) CNV | 70 | 23 | 26 |
DEL PEAK 32(14Q31.1) WILD-TYPE | 86 | 93 | 65 |
P value = 1.12e-05 (Fisher's exact test), Q value = 0.0087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 103 | 116 |
DEL PEAK 32(14Q31.1) CNV | 26 | 50 | 22 |
DEL PEAK 32(14Q31.1) WILD-TYPE | 69 | 53 | 94 |
P value = 7.35e-05 (Fisher's exact test), Q value = 0.055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 94 | 136 |
DEL PEAK 32(14Q31.1) CNV | 34 | 39 | 25 |
DEL PEAK 32(14Q31.1) WILD-TYPE | 50 | 55 | 111 |
P value = 1.15e-07 (Fisher's exact test), Q value = 9.3e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 109 | 85 |
DEL PEAK 32(14Q31.1) CNV | 50 | 16 | 32 |
DEL PEAK 32(14Q31.1) WILD-TYPE | 50 | 93 | 53 |
P value = 3.16e-21 (Fisher's exact test), Q value = 2.8e-18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 33(15Q11.2) CNV | 113 | 43 | 69 | 11 |
DEL PEAK 33(15Q11.2) WILD-TYPE | 73 | 198 | 78 | 4 |
P value = 0.000148 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 103 | 116 |
DEL PEAK 33(15Q11.2) CNV | 41 | 52 | 28 |
DEL PEAK 33(15Q11.2) WILD-TYPE | 54 | 51 | 88 |
P value = 2.46e-05 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 94 | 136 |
DEL PEAK 33(15Q11.2) CNV | 46 | 41 | 34 |
DEL PEAK 33(15Q11.2) WILD-TYPE | 38 | 53 | 102 |
P value = 4.91e-06 (Fisher's exact test), Q value = 0.0038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 109 | 85 |
DEL PEAK 33(15Q11.2) CNV | 54 | 25 | 41 |
DEL PEAK 33(15Q11.2) WILD-TYPE | 46 | 84 | 44 |
P value = 4.96e-19 (Fisher's exact test), Q value = 4.4e-16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 34(15Q21.1) CNV | 107 | 43 | 68 | 11 |
DEL PEAK 34(15Q21.1) WILD-TYPE | 79 | 198 | 79 | 4 |
P value = 0.00025 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 103 | 116 |
DEL PEAK 34(15Q21.1) CNV | 36 | 51 | 27 |
DEL PEAK 34(15Q21.1) WILD-TYPE | 59 | 52 | 89 |
P value = 0.000104 (Fisher's exact test), Q value = 0.077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 109 | 85 |
DEL PEAK 34(15Q21.1) CNV | 49 | 25 | 39 |
DEL PEAK 34(15Q21.1) WILD-TYPE | 51 | 84 | 46 |
P value = 0.000199 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
DEL PEAK 35(15Q22.33) CNV | 12 | 31 | 34 | 6 |
DEL PEAK 35(15Q22.33) WILD-TYPE | 31 | 31 | 35 | 35 |
P value = 5.8e-21 (Fisher's exact test), Q value = 5.2e-18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 35(15Q22.33) CNV | 107 | 38 | 64 | 11 |
DEL PEAK 35(15Q22.33) WILD-TYPE | 79 | 203 | 83 | 4 |
P value = 3.29e-05 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 103 | 116 |
DEL PEAK 35(15Q22.33) CNV | 39 | 50 | 24 |
DEL PEAK 35(15Q22.33) WILD-TYPE | 56 | 53 | 92 |
P value = 6.57e-06 (Fisher's exact test), Q value = 0.0051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 94 | 136 |
DEL PEAK 35(15Q22.33) CNV | 45 | 38 | 30 |
DEL PEAK 35(15Q22.33) WILD-TYPE | 39 | 56 | 106 |
P value = 2.58e-05 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 109 | 85 |
DEL PEAK 35(15Q22.33) CNV | 48 | 23 | 40 |
DEL PEAK 35(15Q22.33) WILD-TYPE | 52 | 86 | 45 |
P value = 8.38e-08 (Fisher's exact test), Q value = 6.8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
DEL PEAK 38(17P12) CNV | 16 | 50 | 51 | 15 |
DEL PEAK 38(17P12) WILD-TYPE | 27 | 12 | 18 | 26 |
P value = 2.2e-05 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
DEL PEAK 38(17P12) CNV | 33 | 30 | 24 | 45 |
DEL PEAK 38(17P12) WILD-TYPE | 9 | 20 | 39 | 15 |
P value = 9.96e-35 (Fisher's exact test), Q value = 8.9e-32
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 38(17P12) CNV | 151 | 70 | 117 | 11 |
DEL PEAK 38(17P12) WILD-TYPE | 35 | 171 | 30 | 4 |
P value = 5.81e-09 (Fisher's exact test), Q value = 4.8e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 156 | 116 | 91 |
DEL PEAK 38(17P12) CNV | 120 | 51 | 43 |
DEL PEAK 38(17P12) WILD-TYPE | 36 | 65 | 48 |
P value = 1.5e-07 (Fisher's exact test), Q value = 0.00012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 103 | 116 |
DEL PEAK 38(17P12) CNV | 58 | 78 | 45 |
DEL PEAK 38(17P12) WILD-TYPE | 37 | 25 | 71 |
P value = 1.89e-09 (Fisher's exact test), Q value = 1.6e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 94 | 136 |
DEL PEAK 38(17P12) CNV | 62 | 68 | 51 |
DEL PEAK 38(17P12) WILD-TYPE | 22 | 26 | 85 |
P value = 2.48e-08 (Fisher's exact test), Q value = 2e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 109 | 85 |
DEL PEAK 38(17P12) CNV | 79 | 43 | 53 |
DEL PEAK 38(17P12) WILD-TYPE | 21 | 66 | 32 |
P value = 5.8e-12 (Fisher's exact test), Q value = 4.9e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
DEL PEAK 40(18P11.31) CNV | 11 | 51 | 52 | 13 |
DEL PEAK 40(18P11.31) WILD-TYPE | 32 | 11 | 17 | 28 |
P value = 6.24e-10 (Fisher's exact test), Q value = 5.2e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
DEL PEAK 40(18P11.31) CNV | 35 | 29 | 17 | 46 |
DEL PEAK 40(18P11.31) WILD-TYPE | 7 | 21 | 46 | 14 |
P value = 1.03e-44 (Fisher's exact test), Q value = 9.3e-42
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 40(18P11.31) CNV | 167 | 65 | 104 | 14 |
DEL PEAK 40(18P11.31) WILD-TYPE | 19 | 176 | 43 | 1 |
P value = 4.9e-18 (Fisher's exact test), Q value = 4.3e-15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 156 | 116 | 91 |
DEL PEAK 40(18P11.31) CNV | 133 | 40 | 48 |
DEL PEAK 40(18P11.31) WILD-TYPE | 23 | 76 | 43 |
P value = 2.25e-16 (Fisher's exact test), Q value = 2e-13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 103 | 116 |
DEL PEAK 40(18P11.31) CNV | 61 | 89 | 37 |
DEL PEAK 40(18P11.31) WILD-TYPE | 34 | 14 | 79 |
P value = 2.42e-15 (Fisher's exact test), Q value = 2.1e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 94 | 136 |
DEL PEAK 40(18P11.31) CNV | 66 | 75 | 46 |
DEL PEAK 40(18P11.31) WILD-TYPE | 18 | 19 | 90 |
P value = 1e-14 (Fisher's exact test), Q value = 8.7e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 109 | 85 |
DEL PEAK 40(18P11.31) CNV | 83 | 34 | 59 |
DEL PEAK 40(18P11.31) WILD-TYPE | 17 | 75 | 26 |
P value = 0.000237 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 105 | 115 | 41 |
DEL PEAK 40(18P11.31) CNV | 28 | 65 | 54 | 29 |
DEL PEAK 40(18P11.31) WILD-TYPE | 5 | 40 | 61 | 12 |
P value = 1.01e-09 (Fisher's exact test), Q value = 8.4e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
DEL PEAK 41(18Q12.2) CNV | 17 | 54 | 56 | 17 |
DEL PEAK 41(18Q12.2) WILD-TYPE | 26 | 8 | 13 | 24 |
P value = 4.59e-09 (Fisher's exact test), Q value = 3.8e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
DEL PEAK 41(18Q12.2) CNV | 37 | 32 | 24 | 51 |
DEL PEAK 41(18Q12.2) WILD-TYPE | 5 | 18 | 39 | 9 |
P value = 1.14e-52 (Fisher's exact test), Q value = 1e-49
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 41(18Q12.2) CNV | 173 | 77 | 130 | 15 |
DEL PEAK 41(18Q12.2) WILD-TYPE | 13 | 164 | 17 | 0 |
P value = 1.59e-20 (Fisher's exact test), Q value = 1.4e-17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 156 | 116 | 91 |
DEL PEAK 41(18Q12.2) CNV | 145 | 51 | 51 |
DEL PEAK 41(18Q12.2) WILD-TYPE | 11 | 65 | 40 |
P value = 1.77e-15 (Fisher's exact test), Q value = 1.5e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 103 | 116 |
DEL PEAK 41(18Q12.2) CNV | 67 | 94 | 47 |
DEL PEAK 41(18Q12.2) WILD-TYPE | 28 | 9 | 69 |
P value = 4.76e-13 (Fisher's exact test), Q value = 4.1e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 94 | 136 |
DEL PEAK 41(18Q12.2) CNV | 71 | 78 | 59 |
DEL PEAK 41(18Q12.2) WILD-TYPE | 13 | 16 | 77 |
P value = 6.25e-15 (Fisher's exact test), Q value = 5.4e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 109 | 85 |
DEL PEAK 41(18Q12.2) CNV | 90 | 44 | 66 |
DEL PEAK 41(18Q12.2) WILD-TYPE | 10 | 65 | 19 |
P value = 0.00022 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 105 | 115 | 41 |
DEL PEAK 41(18Q12.2) CNV | 28 | 71 | 65 | 36 |
DEL PEAK 41(18Q12.2) WILD-TYPE | 5 | 34 | 50 | 5 |
P value = 3.72e-10 (Fisher's exact test), Q value = 3.1e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
DEL PEAK 42(18Q21.2) CNV | 17 | 55 | 57 | 18 |
DEL PEAK 42(18Q21.2) WILD-TYPE | 26 | 7 | 12 | 23 |
P value = 1.64e-08 (Fisher's exact test), Q value = 1.3e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
DEL PEAK 42(18Q21.2) CNV | 37 | 34 | 25 | 51 |
DEL PEAK 42(18Q21.2) WILD-TYPE | 5 | 16 | 38 | 9 |
P value = 5.32e-54 (Fisher's exact test), Q value = 4.8e-51
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 42(18Q21.2) CNV | 176 | 85 | 136 | 15 |
DEL PEAK 42(18Q21.2) WILD-TYPE | 10 | 156 | 11 | 0 |
P value = 1.14e-17 (Fisher's exact test), Q value = 1e-14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 156 | 116 | 91 |
DEL PEAK 42(18Q21.2) CNV | 147 | 61 | 53 |
DEL PEAK 42(18Q21.2) WILD-TYPE | 9 | 55 | 38 |
P value = 1.68e-13 (Fisher's exact test), Q value = 1.4e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 103 | 116 |
DEL PEAK 42(18Q21.2) CNV | 71 | 95 | 54 |
DEL PEAK 42(18Q21.2) WILD-TYPE | 24 | 8 | 62 |
P value = 3.46e-13 (Fisher's exact test), Q value = 3e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 94 | 136 |
DEL PEAK 42(18Q21.2) CNV | 74 | 81 | 65 |
DEL PEAK 42(18Q21.2) WILD-TYPE | 10 | 13 | 71 |
P value = 7.08e-05 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 211 | 95 | 232 |
DEL PEAK 42(18Q21.2) CNV | 169 | 55 | 153 |
DEL PEAK 42(18Q21.2) WILD-TYPE | 42 | 40 | 79 |
P value = 7.99e-13 (Fisher's exact test), Q value = 6.8e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 109 | 85 |
DEL PEAK 42(18Q21.2) CNV | 92 | 52 | 68 |
DEL PEAK 42(18Q21.2) WILD-TYPE | 8 | 57 | 17 |
P value = 2.01e-09 (Fisher's exact test), Q value = 1.7e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
DEL PEAK 43(18Q22.1) CNV | 17 | 55 | 56 | 19 |
DEL PEAK 43(18Q22.1) WILD-TYPE | 26 | 7 | 13 | 22 |
P value = 1.23e-07 (Fisher's exact test), Q value = 9.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
DEL PEAK 43(18Q22.1) CNV | 37 | 32 | 27 | 51 |
DEL PEAK 43(18Q22.1) WILD-TYPE | 5 | 18 | 36 | 9 |
P value = 4.47e-56 (Fisher's exact test), Q value = 4.1e-53
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 43(18Q22.1) CNV | 177 | 81 | 134 | 15 |
DEL PEAK 43(18Q22.1) WILD-TYPE | 9 | 160 | 13 | 0 |
P value = 3.8e-18 (Fisher's exact test), Q value = 3.4e-15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 156 | 116 | 91 |
DEL PEAK 43(18Q22.1) CNV | 146 | 59 | 51 |
DEL PEAK 43(18Q22.1) WILD-TYPE | 10 | 57 | 40 |
P value = 3.84e-13 (Fisher's exact test), Q value = 3.3e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 103 | 116 |
DEL PEAK 43(18Q22.1) CNV | 70 | 94 | 53 |
DEL PEAK 43(18Q22.1) WILD-TYPE | 25 | 9 | 63 |
P value = 1.07e-12 (Fisher's exact test), Q value = 9.1e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 94 | 136 |
DEL PEAK 43(18Q22.1) CNV | 73 | 80 | 64 |
DEL PEAK 43(18Q22.1) WILD-TYPE | 11 | 14 | 72 |
P value = 6.66e-05 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 211 | 95 | 232 |
DEL PEAK 43(18Q22.1) CNV | 167 | 53 | 153 |
DEL PEAK 43(18Q22.1) WILD-TYPE | 44 | 42 | 79 |
P value = 2.13e-13 (Fisher's exact test), Q value = 1.8e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 109 | 85 |
DEL PEAK 43(18Q22.1) CNV | 92 | 50 | 66 |
DEL PEAK 43(18Q22.1) WILD-TYPE | 8 | 59 | 19 |
P value = 2.61e-05 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 44(19P13.3) CNV | 39 | 18 | 33 | 3 |
DEL PEAK 44(19P13.3) WILD-TYPE | 147 | 223 | 114 | 12 |
P value = 9.99e-05 (Fisher's exact test), Q value = 0.074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 37 | 253 | 248 |
DEL PEAK 44(19P13.3) CNV | 16 | 32 | 40 |
DEL PEAK 44(19P13.3) WILD-TYPE | 21 | 221 | 208 |
P value = 9.24e-05 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 45(19Q13.43) CNV | 26 | 12 | 27 | 3 |
DEL PEAK 45(19Q13.43) WILD-TYPE | 160 | 229 | 120 | 12 |
P value = 6.56e-10 (Fisher's exact test), Q value = 5.5e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 46(20P12.1) CNV | 86 | 46 | 49 | 0 |
DEL PEAK 46(20P12.1) WILD-TYPE | 100 | 195 | 98 | 15 |
P value = 1.27e-05 (Fisher's exact test), Q value = 0.0098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 156 | 116 | 91 |
DEL PEAK 46(20P12.1) CNV | 67 | 22 | 19 |
DEL PEAK 46(20P12.1) WILD-TYPE | 89 | 94 | 72 |
P value = 6.56e-10 (Fisher's exact test), Q value = 5.5e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 47(20P12.1) CNV | 86 | 46 | 49 | 0 |
DEL PEAK 47(20P12.1) WILD-TYPE | 100 | 195 | 98 | 15 |
P value = 1.27e-05 (Fisher's exact test), Q value = 0.0098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 156 | 116 | 91 |
DEL PEAK 47(20P12.1) CNV | 67 | 22 | 19 |
DEL PEAK 47(20P12.1) WILD-TYPE | 89 | 94 | 72 |
P value = 5.74e-08 (Fisher's exact test), Q value = 4.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 48(21Q11.2) CNV | 88 | 51 | 53 | 8 |
DEL PEAK 48(21Q11.2) WILD-TYPE | 98 | 190 | 94 | 7 |
P value = 0.00022 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 109 | 85 |
DEL PEAK 48(21Q11.2) CNV | 50 | 25 | 29 |
DEL PEAK 48(21Q11.2) WILD-TYPE | 50 | 84 | 56 |
P value = 1.15e-13 (Fisher's exact test), Q value = 9.9e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 186 | 241 | 147 | 15 |
DEL PEAK 49(22Q13.32) CNV | 104 | 48 | 51 | 8 |
DEL PEAK 49(22Q13.32) WILD-TYPE | 82 | 193 | 96 | 7 |
P value = 0.000177 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 109 | 85 |
DEL PEAK 49(22Q13.32) CNV | 48 | 23 | 32 |
DEL PEAK 49(22Q13.32) WILD-TYPE | 52 | 86 | 53 |
-
Copy number data file = All Lesions File (all_lesions.conf_##.txt, where ## is the confidence level). The all lesions file is from GISTIC pipeline and summarizes the results from the GISTIC run. It contains data about the significant regions of amplification and deletion as well as which samples are amplified or deleted in each of these regions. The identified regions are listed down the first column, and the samples are listed across the first row, starting in column 10.
-
Molecular subtype file = COADREAD-TP.transferedmergedcluster.txt
-
Number of patients = 589
-
Number of copy number variation regions = 76
-
Number of molecular subtypes = 12
-
Exclude regions that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.