Molecular subtypes	MRNA_CNMF		MRNA_CHIERARCHICAL		MIR_CNMF		MIR_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	0 (0%)	522	0.61422	1	0.10424	1	0.96161	1	0.09071	1	2.9911e-05	0.0195	0.63579	1	0.47773	1	0.92453	1	0.4599	1	0.069597	1
1q gain	0 (0%)	517	0.035677	1	0.15253	1	0.44336	1	0.50374	1	6.3658e-08	4.27e-05	0.44839	1	0.71251	1	0.88151	1	1	1	0.15175	1
2p gain	0 (0%)	542	0.19953	1	0.56769	1	0.0018833	1	0.074149	1	0.3743	1	0.51346	1	0.68524	1	0.38479	1	0.57734	1	0.79667	1
2q gain	0 (0%)	544	0.28438	1	0.3224	1	4.3725e-05	0.0284	0.029075	1	0.55255	1	0.51346	1	0.53498	1	0.51996	1	0.79538	1	0.3663	1
3p gain	0 (0%)	531	0.01164	1	0.050831	1	0.34199	1	0.61677	1	0.020597	1	0.16386	1	0.40452	1	0.13699	1	0.80774	1	0.77856	1
3q gain	0 (0%)	531	0.01164	1	0.050831	1	0.34199	1	0.79871	1	0.053048	1	0.16386	1	0.40452	1	0.13699	1	0.74816	1	0.57974	1
4p gain	0 (0%)	546	0.036627	1	0.537	1	0.38326	1	0.052499	1	0.28989	1	NA	NA	0.4441	1	0.14938	1	NA	NA	NA	NA
4q gain	0 (0%)	547	0.40648	1	0.58741	1	0.19623	1	0.086888	1	0.19268	1	NA	NA	0.4441	1	0.14938	1	NA	NA	NA	NA
5p gain	0 (0%)	531	0.32794	1	0.086421	1	0.2498	1	0.50224	1	0.0038334	1	NA	NA	0.1693	1	0.65201	1	0.20133	1	0.20182	1
5q gain	0 (0%)	538	0.25713	1	0.046282	1	0.054955	1	0.21352	1	0.01585	1	NA	NA	NA	NA	NA	NA	0.4425	1	0.36479	1
6p gain	0 (0%)	554	0.74146	1	0.76899	1	0.62727	1	0.39127	1	0.161	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
6q gain	0 (0%)	552	0.5145	1	0.72911	1	0.61597	1	0.22718	1	0.029896	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
7p gain	0 (0%)	130	2.6309e-05	0.0172	3.7712e-06	0.0025	0.00070058	0.438	1.0151e-10	6.92e-08	9.6049e-17	6.65e-14	0.002182	1	0.0016235	0.997	0.47149	1	0.041144	1	0.005521	1
7q gain	0 (0%)	125	7.6608e-06	0.00504	0.00014917	0.0958	0.00094787	0.59	5.9385e-07	0.000397	4.8321e-15	3.34e-12	0.0021092	1	0.019908	1	0.36112	1	0.091588	1	0.011457	1
8p gain	0 (0%)	535	0.00017951	0.115	0.16225	1	0.34275	1	0.011064	1	0.0015044	0.925	0.16386	1	0.064059	1	0.060006	1	0.80774	1	0.5513	1
8q gain	0 (0%)	530	0.00049473	0.313	0.12441	1	0.27561	1	0.0074018	1	0.003629	1	0.058947	1	0.064059	1	0.060006	1	0.33783	1	0.54716	1
9p gain	0 (0%)	544	0.032291	1	0.062118	1	0.72114	1	0.093141	1	0.042416	1	0.57318	1	0.21472	1	0.30529	1	0.31935	1	0.7656	1
9q gain	0 (0%)	528	0.22793	1	0.20924	1	0.44009	1	0.34579	1	0.24159	1	1	1	0.43331	1	0.11583	1	0.58832	1	0.67007	1
10p gain	0 (0%)	550	0.00012725	0.082	0.0033376	1	0.017877	1	0.00045442	0.288	0.0010659	0.66	NA	NA	0.30734	1	0.38357	1	NA	NA	NA	NA
11p gain	0 (0%)	557	0.88376	1	0.79736	1	0.68374	1	0.6352	1	0.26087	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
11q gain	0 (0%)	554	0.082567	1	0.20524	1	0.23226	1	0.1011	1	0.161	1	NA	NA	1	1	0.42091	1	NA	NA	NA	NA
12p gain	0 (0%)	519	0.64506	1	0.44777	1	0.93599	1	0.22226	1	0.0027453	1	0.48991	1	0.35954	1	0.79984	1	0.042701	1	0.25906	1
12q gain	0 (0%)	529	0.32306	1	0.16369	1	0.89325	1	0.09703	1	0.0091602	1	0.74877	1	0.54957	1	0.69468	1	0.10947	1	0.69967	1
13q gain	0 (0%)	558	0.15021	1	0.79736	1	0.15765	1	0.6352	1	0.29007	1	NA	NA	NA	NA	NA	NA	1	1	0.52663	1
14q gain	0 (0%)	554	0.55918	1	0.1114	1	0.057804	1	0.44322	1	0.63748	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
15q gain	0 (0%)	555	0.27494	1	0.62396	1	0.51375	1	0.52075	1	0.012685	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
16p gain	0 (0%)	544	0.082777	1	0.2824	1	0.34643	1	0.28282	1	0.028883	1	NA	NA	0.33206	1	0.44161	1	NA	NA	NA	NA
16q gain	0 (0%)	544	0.056678	1	0.15571	1	0.25128	1	0.037106	1	0.028883	1	NA	NA	0.43331	1	0.44161	1	NA	NA	NA	NA
17p gain	0 (0%)	550	0.025877	1	0.46244	1	0.70726	1	0.55041	1	0.10845	1	NA	NA	1	1	0.28433	1	NA	NA	NA	NA
17q gain	0 (0%)	542	0.37325	1	1	1	0.98714	1	0.3372	1	0.061367	1	NA	NA	0.78567	1	0.38357	1	0.20817	1	0.56157	1
18p gain	0 (0%)	534	0.05015	1	0.1602	1	0.40759	1	0.50251	1	7.5789e-05	0.0489	0.23626	1	0.40836	1	0.54773	1	0.065603	1	0.25906	1
18q gain	0 (0%)	532	0.011303	1	0.12415	1	0.24613	1	0.54972	1	3.5241e-05	0.0229	0.23626	1	0.72162	1	0.40714	1	0.020882	1	0.103	1
19p gain	0 (0%)	385	1.6217e-12	1.11e-09	5.0123e-09	3.39e-06	0.26517	1	0.0011912	0.734	2.8261e-23	1.96e-20	0.00052082	0.329	0.017521	1	3.0851e-06	0.00205	0.10158	1	0.0082126	1
19q gain	0 (0%)	410	5.6894e-15	3.93e-12	6.5362e-13	4.5e-10	0.087872	1	6.8888e-05	0.0446	6.8617e-29	4.77e-26	0.017109	1	0.052846	1	4.3117e-06	0.00286	0.025026	1	0.012356	1
20p gain	0 (0%)	381	3.009e-10	2.05e-07	9.5356e-12	6.54e-09	0.17564	1	4.5118e-05	0.0292	2.9866e-09	2.02e-06	0.065387	1	0.09463	1	0.0022784	1	0.91408	1	0.00071253	0.445
20q gain	0 (0%)	383	9.2506e-11	6.32e-08	1.0205e-11	6.99e-09	0.14022	1	1.6364e-05	0.0108	5.6781e-09	3.83e-06	0.016008	1	0.059476	1	0.0011577	0.714	0.83414	1	0.0004034	0.257
21q gain	0 (0%)	526	0.034192	1	0.0075515	1	0.010933	1	0.00068371	0.429	0.062293	1	NA	NA	0.41081	1	0.9117	1	0.017132	1	0.032917	1
22q gain	0 (0%)	550	0.015577	1	0.17384	1	0.13457	1	0.40666	1	0.076772	1	NA	NA	1	1	0.28433	1	NA	NA	NA	NA
Xq gain	0 (0%)	558	0.55632	1	0.79736	1	0.33946	1	0.6352	1	0.19678	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
1p loss	0 (0%)	556	0.4744	1	0.82424	1	1	1	0.10588	1	0.53207	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
1q loss	0 (0%)	557	0.36738	1	1	1	0.68374	1	1	1	1	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
2p loss	0 (0%)	551	0.10085	1	0.03367	1	0.67789	1	0.019508	1	0.16374	1	0.27101	1	0.72416	1	1	1	0.039301	1	0.11956	1
2q loss	0 (0%)	552	0.075636	1	0.023888	1	0.23858	1	0.0028673	1	0.18407	1	0.27101	1	0.72416	1	1	1	0.039301	1	0.11956	1
3p loss	0 (0%)	539	0.90618	1	0.74436	1	0.59306	1	0.52705	1	0.0076863	1	0.16386	1	0.083521	1	0.65346	1	0.36977	1	0.43586	1
3q loss	0 (0%)	545	0.2236	1	0.46724	1	0.029051	1	0.45654	1	0.00033867	0.216	NA	NA	0.80732	1	1	1	0.45435	1	0.27807	1
4p loss	0 (0%)	535	0.084987	1	0.043214	1	0.16798	1	0.082055	1	0.87632	1	0.57318	1	0.090276	1	0.43045	1	0.14019	1	0.43586	1
4q loss	0 (0%)	536	0.0010493	0.651	0.13506	1	0.15474	1	0.18066	1	0.10125	1	0.82113	1	0.098474	1	0.55099	1	0.51727	1	0.56157	1
5p loss	0 (0%)	540	0.00040745	0.259	0.075668	1	0.17178	1	0.12347	1	0.11001	1	0.047965	1	0.46938	1	1	1	0.78531	1	0.49478	1
5q loss	0 (0%)	541	0.0043157	1	0.86962	1	0.29699	1	0.1585	1	0.058439	1	0.047965	1	0.87271	1	1	1	0.46511	1	0.48265	1
6p loss	0 (0%)	515	0.92088	1	0.48741	1	0.33904	1	0.41428	1	9.0373e-10	6.14e-07	0.74343	1	0.91389	1	0.59227	1	0.66172	1	0.4448	1
6q loss	0 (0%)	481	0.93236	1	0.60698	1	0.61913	1	0.064782	1	3.5562e-09	2.41e-06	0.040391	1	0.89585	1	0.6777	1	0.82443	1	0.38273	1
7p loss	0 (0%)	556	0.23601	1	0.4534	1	0.76376	1	0.037139	1	0.53207	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
7q loss	0 (0%)	557	0.3115	1	0.82424	1	1	1	0.10588	1	0.8342	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
8p loss	0 (0%)	527	0.34804	1	0.88962	1	0.77176	1	0.23462	1	0.27227	1	0.33074	1	0.65148	1	0.9117	1	0.72571	1	0.69967	1
8q loss	0 (0%)	540	0.54613	1	0.36077	1	0.38921	1	0.15978	1	0.015505	1	NA	NA	0.21181	1	0.82341	1	1	1	0.36479	1
9p loss	0 (0%)	396	0.0023898	1	0.0099283	1	0.85868	1	0.098743	1	0.21644	1	0.84308	1	0.23555	1	0.035963	1	0.034391	1	0.037193	1
9q loss	0 (0%)	497	0.28904	1	0.0024591	1	0.73276	1	0.091032	1	0.039482	1	0.56107	1	0.023574	1	0.028248	1	0.46883	1	0.18991	1
10p loss	0 (0%)	127	1.5567e-07	0.000104	2.7915e-05	0.0182	0.01723	1	5.6016e-09	3.78e-06	8.2145e-29	5.7e-26	0.0056414	1	0.00056666	0.357	0.00065568	0.412	0.53073	1	0.06028	1
10q loss	0 (0%)	114	3.5267e-08	2.37e-05	1.8108e-06	0.00121	0.013834	1	2.1691e-06	0.00145	1.3307e-31	9.26e-29	0.0036405	1	6.963e-05	0.045	0.0016438	1	0.72949	1	0.090801	1
11p loss	0 (0%)	498	6.2499e-09	4.21e-06	2.1381e-05	0.014	0.19368	1	4.3753e-06	0.0029	2.0941e-11	1.43e-08	0.0019238	1	0.67888	1	0.065924	1	0.044323	1	0.42633	1
11q loss	0 (0%)	507	3.055e-05	0.0199	0.005503	1	0.79992	1	0.0091403	1	5.2587e-10	3.58e-07	0.31223	1	0.5772	1	0.093295	1	0.64757	1	0.8683	1
12p loss	0 (0%)	523	0.048199	1	0.017684	1	0.16899	1	0.03648	1	0.75676	1	0.60641	1	0.10009	1	0.47409	1	1	1	1	1
12q loss	0 (0%)	526	0.075175	1	0.0066977	1	0.74103	1	0.045673	1	0.13743	1	0.40522	1	0.10189	1	0.69468	1	0.8388	1	0.54716	1
13q loss	0 (0%)	423	0.00013213	0.085	0.00031525	0.201	0.62178	1	0.75085	1	8.8723e-14	6.11e-11	0.0011267	0.696	0.60059	1	0.018195	1	0.21993	1	0.30902	1
14q loss	0 (0%)	441	2.7186e-06	0.00181	0.0055407	1	0.45143	1	0.66509	1	5.4147e-33	3.77e-30	0.01486	1	0.75255	1	0.06036	1	0.035904	1	0.004944	1
15q loss	0 (0%)	499	0.0018194	1	2.4839e-05	0.0163	0.0017669	1	6.4655e-06	0.00427	6.6122e-06	0.00436	0.00061195	0.385	0.10831	1	0.022362	1	0.015296	1	0.45219	1
16p loss	0 (0%)	538	0.1475	1	0.53592	1	0.46169	1	0.70533	1	0.12713	1	0.32657	1	0.64396	1	0.88983	1	0.50141	1	0.18455	1
16q loss	0 (0%)	520	0.061831	1	0.085148	1	0.12448	1	0.40715	1	0.28758	1	0.40561	1	0.075369	1	0.94503	1	0.70619	1	0.56879	1
17p loss	0 (0%)	525	0.10235	1	0.46196	1	0.85755	1	0.86838	1	6.4798e-06	0.00428	0.38031	1	0.05555	1	0.82603	1	0.50251	1	1	1
17q loss	0 (0%)	542	0.19614	1	0.33159	1	0.3997	1	0.29698	1	0.0018034	1	NA	NA	0.21433	1	0.27726	1	0.1677	1	0.093343	1
18p loss	0 (0%)	517	0.0026219	1	0.056596	1	0.48944	1	0.64065	1	0.00097993	0.609	0.18076	1	0.2461	1	0.038732	1	0.059642	1	0.52075	1
18q loss	0 (0%)	523	0.24939	1	0.12442	1	0.34551	1	0.97302	1	0.051699	1	0.18719	1	0.035304	1	0.00069456	0.435	0.56663	1	0.68736	1
19p loss	0 (0%)	549	0.00046001	0.291	0.058555	1	0.00092192	0.574	0.019774	1	0.088932	1	0.51346	1	0.37089	1	0.57388	1	0.45435	1	0.3663	1
19q loss	0 (0%)	545	0.0034149	1	0.17529	1	0.033477	1	0.031103	1	0.047221	1	0.51346	1	0.37089	1	0.57388	1	0.81243	1	0.79667	1
20p loss	0 (0%)	550	0.0042556	1	0.15631	1	0.11717	1	0.093246	1	0.0038588	1	NA	NA	0.41365	1	0.38357	1	NA	NA	NA	NA
20q loss	0 (0%)	551	0.016127	1	0.16872	1	0.67789	1	0.44624	1	0.021586	1	NA	NA	0.41365	1	0.38357	1	NA	NA	NA	NA
21q loss	0 (0%)	536	0.00031672	0.202	0.021741	1	0.088669	1	0.0049404	1	0.029594	1	0.076523	1	0.027916	1	0.32615	1	0.60213	1	0.84833	1
22q loss	0 (0%)	421	0.86861	1	0.71846	1	0.53728	1	0.88604	1	0.00016658	0.107	0.32244	1	0.73138	1	0.95544	1	0.1561	1	0.88475	1
Xq loss	0 (0%)	550	0.42543	1	0.46132	1	0.11717	1	0.25949	1	0.15358	1	NA	NA	0.63573	1	0.31618	1	0.51727	1	0.45361	1