Molecular subtypes	MRNA_CNMF		MRNA_CHIERARCHICAL		MIR_CNMF		MIR_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1p36.21)	0 (0%)	473	0.56233	1	0.58786	1	0.20259	1	0.0216	1	4.3996e-08	2.92e-05	0.47272	1	0.048018	1	0.053126	1	0.096667	1	0.080751	1
Amp Peak  2(1q32.1)	0 (0%)	409	0.91265	1	0.35382	1	0.25278	1	0.1774	1	4.6186e-08	3.06e-05	0.62309	1	0.84023	1	0.33494	1	0.47533	1	0.094976	1
Amp Peak  3(1q44)	0 (0%)	466	0.275	1	0.45307	1	0.36391	1	0.39852	1	2.533e-08	1.68e-05	0.93138	1	0.42576	1	0.17666	1	0.77495	1	0.43905	1
Amp Peak  4(2p24.3)	0 (0%)	516	0.042708	1	0.013385	1	0.77188	1	0.37696	1	0.00051612	0.298	0.057402	1	0.20875	1	0.11216	1	0.92959	1	1	1
Amp Peak  5(3q26.33)	0 (0%)	453	0.018027	1	0.066772	1	0.9778	1	0.51858	1	1.1509e-06	0.000737	0.0045181	1	0.068497	1	0.35834	1	0.54612	1	0.32124	1
Amp Peak  6(4p16.3)	0 (0%)	515	0.39185	1	0.29623	1	0.8095	1	0.17276	1	0.4654	1	0.52885	1	0.63621	1	0.52964	1	0.94113	1	0.75905	1
Amp Peak  7(4q12)	0 (0%)	457	0.00049144	0.285	1.4372e-05	0.00885	0.47171	1	0.064822	1	1.1958e-07	7.89e-05	0.38388	1	0.27239	1	0.6641	1	0.048662	1	0.40346	1
Amp Peak  8(7p11.2)	0 (0%)	69	2.5635e-11	1.74e-08	7.7461e-10	5.23e-07	3.0796e-07	2e-04	1.6565e-12	1.13e-09	1.5349e-20	1.07e-17	1.3224e-06	0.000844	8.6159e-06	0.00534	5.8467e-05	0.0353	1.1062e-05	0.00685	0.00035718	0.208
Amp Peak  9(7q11.21)	0 (0%)	111	8.1183e-06	0.00505	2.5856e-06	0.00163	4.5311e-06	0.00285	2.5414e-09	1.7e-06	2.0432e-09	1.37e-06	0.0058471	1	0.0041699	1	0.33614	1	0.0039995	1	0.0014258	0.8
Amp Peak 10(7q21.2)	0 (0%)	95	1.4449e-05	0.00887	0.00031368	0.183	0.010147	1	2.2242e-06	0.00141	1.2348e-10	8.37e-08	0.0036328	1	0.017878	1	0.096351	1	0.061751	1	0.0047445	1
Amp Peak 11(7q31.2)	0 (0%)	103	0.0010349	0.589	0.00073569	0.422	0.0018528	1	0.00048901	0.284	2.5507e-07	0.000166	0.010708	1	0.10315	1	0.18275	1	0.25603	1	0.0035488	1
Amp Peak 12(7q36.1)	0 (0%)	98	5.2117e-05	0.0316	0.0015525	0.868	0.056704	1	3.8027e-06	0.0024	1.6624e-05	0.0102	0.0036328	1	0.22665	1	0.24851	1	0.029153	1	0.0046732	1
Amp Peak 13(8q24.21)	0 (0%)	497	2.0005e-07	0.000131	0.00011026	0.0662	0.036835	1	5.607e-05	0.0339	3.9883e-06	0.00251	0.069904	1	0.10389	1	0.00574	1	0.1314	1	0.34499	1
Amp Peak 14(11p13)	0 (0%)	535	0.69297	1	0.85769	1	0.33687	1	0.43859	1	0.46794	1	0.18073	1	0.26474	1	0.1124	1	0.60213	1	1	1
Amp Peak 15(12p13.32)	0 (0%)	480	0.60562	1	0.78083	1	0.54404	1	0.88127	1	4.9334e-05	0.0299	0.27795	1	0.4105	1	0.5525	1	0.44232	1	0.15115	1
Amp Peak 16(12q14.1)	0 (0%)	430	0.07697	1	0.11582	1	0.18072	1	0.12625	1	2.5118e-09	1.68e-06	0.52461	1	0.045199	1	0.33818	1	0.033479	1	0.054286	1
Amp Peak 17(12q15)	0 (0%)	469	0.65456	1	0.50013	1	0.56852	1	0.3118	1	1.1499e-06	0.000737	0.563	1	0.27272	1	0.64947	1	0.33302	1	0.34949	1
Amp Peak 18(13q34)	0 (0%)	531	0.19325	1	0.42941	1	0.16517	1	0.15956	1	0.0060553	1	NA	NA	0.067705	1	0.18637	1	0.36772	1	1	1
Amp Peak 19(14q32.33)	0 (0%)	528	0.37972	1	0.70958	1	0.011059	1	0.8354	1	0.89948	1	0.9029	1	0.039435	1	0.27529	1	0.04293	1	0.88374	1
Amp Peak 20(17p13.2)	0 (0%)	516	0.0025049	1	0.022325	1	0.071173	1	0.1688	1	0.0074072	1	0.86457	1	0.054502	1	0.63009	1	0.6154	1	0.28089	1
Amp Peak 21(17q25.1)	0 (0%)	484	0.02604	1	0.29219	1	0.41016	1	0.3667	1	0.00012187	0.073	0.93662	1	0.12965	1	0.29225	1	1	1	0.41718	1
Amp Peak 22(19p13.2)	0 (0%)	322	6.2369e-13	4.27e-10	5.6975e-07	0.000369	0.24958	1	0.0045473	1	8.9274e-20	6.2e-17	0.016985	1	0.011603	1	1.3206e-05	0.00815	0.16383	1	0.019921	1
Amp Peak 23(19q12)	0 (0%)	358	2.8349e-11	1.92e-08	1.7832e-09	1.2e-06	0.2623	1	0.0020587	1	3.2106e-15	2.22e-12	0.055298	1	0.017437	1	0.00021327	0.125	0.082258	1	0.043799	1
Amp Peak 24(21q21.1)	0 (0%)	495	0.0029758	1	0.0068012	1	0.083835	1	0.058869	1	0.0014227	0.8	0.87875	1	0.66864	1	0.82963	1	0.096667	1	0.066317	1
Del Peak  1(1p36.32)	0 (0%)	462	0.80936	1	0.037841	1	0.50483	1	0.24297	1	0.61945	1	0.33887	1	0.54481	1	0.56127	1	0.25154	1	0.043727	1
Del Peak  2(1p36.23)	0 (0%)	426	0.1635	1	0.049544	1	0.31725	1	0.29757	1	0.00091176	0.52	0.30609	1	0.27905	1	0.7246	1	0.063239	1	0.10256	1
Del Peak  3(1p32.3)	0 (0%)	502	0.3064	1	0.54197	1	0.98158	1	0.85618	1	0.14259	1	0.8219	1	0.70568	1	0.63009	1	0.80326	1	0.15851	1
Del Peak  4(1p22.1)	0 (0%)	514	0.86503	1	0.87537	1	0.73646	1	0.18782	1	0.15943	1	0.5794	1	0.88804	1	0.37191	1	1	1	0.014951	1
Del Peak  5(1q42.11)	0 (0%)	514	0.28504	1	0.8923	1	0.41829	1	0.47177	1	0.50105	1	0.41201	1	0.16138	1	0.0028605	1	0.68571	1	0.64674	1
Del Peak  6(1q44)	0 (0%)	529	0.70442	1	0.4624	1	0.66858	1	0.11151	1	0.61141	1	0.18719	1	0.79891	1	0.33523	1	0.53861	1	0.90362	1
Del Peak  7(2q22.1)	0 (0%)	517	0.0023948	1	0.031403	1	0.45274	1	0.026415	1	1.691e-06	0.00108	0.0033757	1	0.47773	1	0.85985	1	0.18131	1	0.21027	1
Del Peak  8(2q37.1)	0 (0%)	505	0.070761	1	0.0090556	1	0.24206	1	0.00018403	0.109	0.0064953	1	0.026489	1	0.64712	1	0.72024	1	0.18131	1	0.68736	1
Del Peak  9(3p21.1)	0 (0%)	509	0.24275	1	0.52131	1	0.89485	1	0.078556	1	0.00020105	0.118	0.25162	1	0.13407	1	0.85502	1	0.46101	1	0.095907	1
Del Peak 10(3q13.31)	0 (0%)	506	0.51383	1	0.86347	1	0.97693	1	0.30507	1	7.2063e-06	0.0045	0.40522	1	0.86951	1	0.7973	1	1	1	0.054664	1
Del Peak 11(3q22.1)	0 (0%)	506	0.79188	1	0.23179	1	0.62678	1	0.59575	1	0.00029292	0.172	0.19764	1	0.85867	1	0.89192	1	1	1	0.103	1
Del Peak 12(3q29)	0 (0%)	498	0.090128	1	0.22238	1	0.57454	1	0.89077	1	0.0060559	1	0.25863	1	0.37875	1	0.68426	1	0.95369	1	0.73057	1
Del Peak 13(4p16.3)	0 (0%)	484	0.056714	1	0.006425	1	0.57176	1	0.099668	1	0.092633	1	1	1	0.83198	1	0.70968	1	0.87243	1	0.818	1
Del Peak 14(4q34.3)	0 (0%)	471	0.00463	1	0.0053466	1	0.16004	1	0.034231	1	0.00018898	0.112	0.15224	1	0.096666	1	0.28297	1	0.12473	1	0.96047	1
Del Peak 15(5q35.2)	0 (0%)	507	1.579e-05	0.00968	0.0024379	1	0.0001425	0.0849	1.4601e-06	0.00093	6.241e-05	0.0376	0.0033757	1	0.94352	1	0.295	1	0.20834	1	0.84127	1
Del Peak 16(6q22.31)	0 (0%)	407	0.64792	1	0.91192	1	0.59913	1	0.02903	1	1.2773e-11	8.7e-09	0.31118	1	0.20413	1	0.19242	1	0.79618	1	0.42568	1
Del Peak 17(6q26)	0 (0%)	387	0.75259	1	0.069958	1	0.87843	1	0.08062	1	6.2148e-07	0.000401	0.61676	1	0.016621	1	0.011075	1	0.76149	1	0.29159	1
Del Peak 18(8p23.2)	0 (0%)	495	0.47472	1	0.6592	1	0.22942	1	0.49838	1	0.064968	1	0.89155	1	0.95058	1	0.94578	1	0.6198	1	0.15857	1
Del Peak 19(9p21.3)	0 (0%)	155	8.3009e-06	0.00515	1.5237e-07	1e-04	0.57223	1	0.0035075	1	1.2369e-10	8.37e-08	0.041717	1	0.087829	1	0.018195	1	0.027386	1	0.0031866	1
Del Peak 20(9q34.2)	0 (0%)	490	0.1636	1	0.044162	1	0.79655	1	0.26073	1	0.31164	1	0.65183	1	0.11278	1	0.24121	1	0.44232	1	0.056927	1
Del Peak 21(10p15.3)	0 (0%)	105	4.0505e-06	0.00255	0.00015137	0.0901	0.0063147	1	1.6603e-07	0.000109	5.1795e-14	3.55e-11	0.034978	1	0.0052254	1	0.027846	1	0.01469	1	0.40989	1
Del Peak 22(10p13)	0 (0%)	103	6.2437e-07	0.000403	1.4372e-05	0.00885	0.0012621	0.714	1.1471e-07	7.58e-05	3.9757e-15	2.74e-12	0.034978	1	0.00013218	0.0789	0.0045757	1	0.088463	1	0.40989	1
Del Peak 23(10p11.23)	0 (0%)	99	9.693e-10	6.52e-07	1.8596e-07	0.000122	0.00019945	0.118	9.3203e-09	6.21e-06	3.9727e-16	2.75e-13	0.026965	1	0.00078609	0.45	0.017517	1	0.044323	1	0.083993	1
Del Peak 24(10q23.31)	0 (0%)	63	1.0473e-06	0.000673	3.8496e-05	0.0235	0.0033717	1	3.8523e-05	0.0235	4.7719e-16	3.3e-13	0.1956	1	0.010462	1	0.13133	1	0.3692	1	0.15968	1
Del Peak 25(10q26.3)	0 (0%)	62	2.5226e-07	0.000164	4.7535e-06	0.00298	0.05141	1	3.3133e-05	0.0202	1.7281e-13	1.18e-10	0.014516	1	0.11739	1	0.07612	1	0.25023	1	0.37806	1
Del Peak 26(11p15.5)	0 (0%)	435	1.5864e-09	1.07e-06	2.2591e-07	0.000147	0.25579	1	1.7578e-06	0.00112	7.172e-15	4.93e-12	0.00030874	0.181	0.26789	1	0.093788	1	0.0011946	0.677	0.26273	1
Del Peak 27(11p11.2)	0 (0%)	461	2.009e-07	0.000131	0.00016035	0.0951	0.94101	1	1.2748e-05	0.00788	6.7783e-13	4.63e-10	0.00070101	0.403	0.82528	1	0.5761	1	0.051011	1	0.70645	1
Del Peak 28(11q14.1)	0 (0%)	467	1.293e-06	0.000826	0.015529	1	0.93716	1	0.0029856	1	5.3833e-16	3.72e-13	0.25863	1	0.55152	1	0.49965	1	0.090808	1	0.79283	1
Del Peak 29(12p13.1)	0 (0%)	487	0.026561	1	0.0033344	1	0.18185	1	0.1035	1	0.10591	1	0.66946	1	0.87506	1	0.52221	1	0.94444	1	0.5664	1
Del Peak 30(12q12)	0 (0%)	485	0.0087382	1	0.00073367	0.421	0.29517	1	0.015272	1	0.00019965	0.118	0.29929	1	0.13734	1	0.48909	1	0.94113	1	0.8683	1
Del Peak 31(12q15)	0 (0%)	484	0.0001281	0.0766	6.1507e-05	0.0371	0.34998	1	0.044806	1	6.3563e-07	0.000409	0.51389	1	0.52705	1	0.72395	1	0.58542	1	0.9431	1
Del Peak 32(13q14.2)	0 (0%)	325	1.5564e-07	0.000102	3.8722e-05	0.0235	0.13451	1	0.18397	1	3.4805e-16	2.42e-13	0.032811	1	0.79446	1	0.10731	1	0.092066	1	0.19282	1
Del Peak 33(14q13.1)	0 (0%)	387	7.7386e-06	0.00482	0.0092017	1	0.57749	1	0.23403	1	2.64e-29	1.84e-26	0.10807	1	0.57695	1	0.36743	1	0.29063	1	0.74226	1
Del Peak 34(14q24.2)	0 (0%)	392	1.2574e-07	8.29e-05	0.00060236	0.348	0.040776	1	0.91474	1	1.24e-38	8.66e-36	0.050278	1	0.45717	1	0.27508	1	0.049695	1	0.1423	1
Del Peak 35(14q31.3)	0 (0%)	406	5.1205e-09	3.42e-06	0.0019087	1	0.29201	1	0.87954	1	1.3095e-40	9.15e-38	0.0099559	1	0.51532	1	0.10803	1	0.22195	1	0.084579	1
Del Peak 36(15q14)	0 (0%)	413	7.1104e-06	0.00445	3.3889e-08	2.25e-05	0.01199	1	2.1406e-06	0.00136	3.912e-07	0.000253	0.0023069	1	0.069929	1	0.024056	1	0.00035153	0.205	0.15823	1
Del Peak 37(16p12.2)	0 (0%)	472	0.40786	1	0.50148	1	0.045526	1	0.73657	1	0.10387	1	0.2431	1	0.40497	1	0.53544	1	0.44344	1	0.42161	1
Del Peak 38(16q23.3)	0 (0%)	466	0.017601	1	0.52433	1	0.72739	1	0.82757	1	0.0053283	1	0.75202	1	0.038497	1	0.0802	1	0.52795	1	0.46835	1
Del Peak 39(17p13.2)	0 (0%)	477	0.0030447	1	0.70991	1	0.89005	1	0.71671	1	4.959e-10	3.35e-07	0.37599	1	0.63243	1	0.48732	1	0.5875	1	0.26054	1
Del Peak 40(17p13.1)	0 (0%)	467	0.00043206	0.251	0.33999	1	0.89418	1	0.74905	1	4.7257e-15	3.25e-12	0.13317	1	0.7093	1	0.44734	1	0.6447	1	0.2946	1
Del Peak 41(17q11.2)	0 (0%)	491	7.3365e-06	0.00458	0.001352	0.761	0.0010693	0.607	0.020908	1	1.0517e-06	0.000675	0.49617	1	0.0059434	1	0.0051207	1	0.53901	1	0.10378	1
Del Peak 42(18q22.3)	0 (0%)	482	0.25393	1	0.1308	1	0.46552	1	0.46143	1	0.002166	1	0.09281	1	0.031513	1	0.0013371	0.754	0.15879	1	0.69744	1
Del Peak 43(19q13.41)	0 (0%)	462	0.0026555	1	0.00015528	0.0922	0.0026985	1	0.0024109	1	0.001298	0.733	0.77833	1	0.040129	1	0.57385	1	0.019988	1	0.094064	1
Del Peak 44(21q22.3)	0 (0%)	502	0.0014881	0.833	0.062747	1	8.7277e-05	0.0525	0.00060942	0.351	0.073762	1	0.068455	1	0.38965	1	0.1207	1	1	1	0.11926	1
Del Peak 45(22q13.32)	0 (0%)	353	0.80376	1	0.19116	1	0.018051	1	0.18653	1	0.00082261	0.47	0.7739	1	0.91464	1	0.94099	1	0.072121	1	0.92299	1
Del Peak 46(Xp22.2)	0 (0%)	438	0.0040156	1	0.035919	1	0.10134	1	0.21568	1	8.5196e-10	5.74e-07	0.0095061	1	0.60521	1	0.25339	1	0.33673	1	0.64363	1