Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		MIR_CNMF		MIR_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL	
	nMutated (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
EGFR	74 (26%)	209	0.0070287	0.815	0.030918	1	0.36931	1	0.18378	1	8.2271e-07	0.000114	0.005644	0.672	6.3736e-05	0.0086	1.463e-06	2e-04	0.041343	1	0.35695	1
PIK3R1	32 (11%)	251	0.75107	1	0.68132	1	0.44535	1	0.31357	1	0.11484	1	0.40691	1	0.98818	1	0.27286	1	0.40561	1	0.64893	1
BRAF	6 (2%)	277	0.76786	1	0.35249	1	0.61931	1	0.091901	1	0.58533	1	NA	NA	1	1	0.078076	1	0.79121	1	1	1
IDH1	14 (5%)	269	9.1274e-05	0.0121	8.1979e-07	0.000114	0.00023712	0.0311	3.9046e-05	0.00531	7.6126e-05	0.0102	0.001511	0.189	0.0035226	0.423	0.020325	1	0.00071234	0.0912	0.0026329	0.319
TP53	79 (28%)	204	0.00066112	0.0853	0.000459	0.0597	0.0013944	0.176	0.024959	1	0.00012164	0.0161	0.0083687	0.962	0.038377	1	0.0096772	1	0.0018446	0.227	0.037471	1
PTEN	87 (31%)	196	0.11598	1	0.42583	1	0.046075	1	0.85855	1	0.59921	1	0.91703	1	0.37848	1	0.38945	1	0.27044	1	0.19564	1
PIK3CA	30 (11%)	253	0.72519	1	0.63051	1	0.53689	1	0.64916	1	0.49989	1	0.91635	1	0.7545	1	0.28115	1	0.26203	1	0.83762	1
RB1	25 (9%)	258	0.014957	1	0.0064802	0.765	0.055799	1	0.34304	1	0.06501	1	0.070948	1	0.4926	1	0.69117	1	0.043424	1	0.040654	1
PRB2	6 (2%)	277	0.64162	1	0.37267	1	0.47781	1	0.6241	1	0.77118	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
NF1	29 (10%)	254	0.081103	1	0.053291	1	0.086605	1	0.42291	1	0.0012254	0.156	0.0016722	0.207	0.22964	1	0.11973	1	0.56596	1	0.91494	1
STAG2	12 (4%)	271	0.39164	1	0.13238	1	0.30589	1	0.019445	1	0.75649	1	0.75207	1	0.0069359	0.812	0.18373	1	0.47875	1	0.77076	1
CDC27	6 (2%)	277	0.35053	1	0.37267	1	0.75706	1	0.37282	1	0.44819	1	0.22659	1	0.27836	1	0.32478	1	NA	NA	NA	NA
WNT2	5 (2%)	278	0.15125	1	0.0023459	0.286	1	1	0.7843	1	1	1	NA	NA	0.041607	1	0.42317	1	NA	NA	NA	NA
TPTE2	8 (3%)	275	0.46042	1	1	1	0.35978	1	0.24368	1	0.30554	1	0.43781	1	0.62449	1	0.4088	1	0.37597	1	0.74053	1
GABRA6	11 (4%)	272	0.11096	1	0.56039	1	0.51033	1	0.55452	1	0.36527	1	0.66978	1	0.31791	1	0.47355	1	0.12381	1	1	1