Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q
3p gain	0 (0%)	61	0.72059	1	1	1	1	1	0.94236	1	0.14979	1	0.13368	1	0.11889	1	0.61604	1
3q gain	0 (0%)	61	0.72059	1	1	1	1	1	0.94236	1	0.14979	1	0.13368	1	0.11889	1	0.61604	1
4p gain	0 (0%)	48	0.38274	1	0.93432	1	4.5618e-05	0.0194	0.00016144	0.0662	0.23941	1	0.10005	1	0.93839	1	0.047657	1
4q gain	0 (0%)	49	0.36204	1	0.80597	1	0.00017284	0.0707	0.00078384	0.31	0.144	1	0.097737	1	0.78422	1	0.091282	1
5p gain	0 (0%)	61	0.54894	1	1	1	1	1	0.83932	1	0.85732	1	0.13368	1	0.75705	1	0.39822	1
5q gain	0 (0%)	61	0.54894	1	1	1	1	1	0.83932	1	0.85732	1	0.13368	1	0.75705	1	0.39822	1
7p gain	0 (0%)	48	0.38274	1	0.93432	1	0.0090598	1	0.019103	1	0.19706	1	1	1	0.69648	1	0.27041	1
7q gain	0 (0%)	48	0.38274	1	0.93432	1	0.0090598	1	0.019103	1	0.19706	1	1	1	0.69648	1	0.27041	1
8p gain	0 (0%)	53	0.27392	1	0.59863	1	0.027588	1	0.084812	1	0.17714	1	1	1	0.49342	1	0.16013	1
8q gain	0 (0%)	52	0.15727	1	0.61298	1	0.0099404	1	0.031654	1	0.38741	1	1	1	0.63321	1	0.088556	1
9p gain	0 (0%)	58	1	1	0.77879	1	0.91094	1	0.8411	1	0.80409	1	0.29802	1	0.44264	1	0.82339	1
9q gain	0 (0%)	58	1	1	0.77879	1	0.91094	1	0.8411	1	0.80409	1	0.29802	1	0.44264	1	0.82339	1
11p gain	0 (0%)	53	0.51686	1	0.59863	1	0.00028747	0.116	0.00015643	0.0643	0.50046	1	0.18649	1	0.71727	1	0.036099	1
11q gain	0 (0%)	52	0.6059	1	0.61298	1	8.3317e-05	0.0352	2.7835e-05	0.0119	0.69782	1	0.18625	1	0.85536	1	0.019216	1
12p gain	0 (0%)	52	0.68779	1	1	1	0.012927	1	0.054195	1	0.69782	1	1	1	0.9947	1	0.2599	1
12q gain	0 (0%)	53	0.76351	1	0.77151	1	0.013508	1	0.019127	1	0.86003	1	0.67517	1	0.96805	1	0.3736	1
14q gain	0 (0%)	50	0.34021	1	0.92776	1	0.00070572	0.28	0.0033198	1	0.26121	1	0.43576	1	0.98645	1	0.14599	1
15q gain	0 (0%)	52	0.22401	1	0.66436	1	0.0011285	0.441	0.0064571	1	0.28702	1	0.67109	1	0.7754	1	0.16931	1
16p gain	0 (0%)	51	0.55562	1	1	1	9.2138e-05	0.0386	0.00093591	0.37	0.13723	1	0.10551	1	0.90893	1	0.031753	1
16q gain	0 (0%)	51	0.55562	1	1	1	9.2138e-05	0.0386	0.00093591	0.37	0.13723	1	0.10551	1	0.90893	1	0.031753	1
18p gain	0 (0%)	52	0.47487	1	0.5623	1	0.0061976	1	0.019056	1	0.80606	1	0.38645	1	0.4953	1	0.075468	1
18q gain	0 (0%)	53	0.67133	1	0.77151	1	0.0040916	1	0.01832	1	0.92633	1	1	1	0.71727	1	0.10831	1
19p gain	0 (0%)	55	0.86679	1	0.90381	1	0.002063	0.788	0.0021875	0.828	0.29005	1	0.33662	1	0.97662	1	0.069417	1
19q gain	0 (0%)	57	0.71339	1	0.71226	1	0.0026896	1	0.0037186	1	0.39699	1	0.34107	1	0.97387	1	0.04441	1
20p gain	0 (0%)	52	0.22401	1	0.5623	1	0.0046788	1	0.0037669	1	0.12417	1	0.67109	1	0.84244	1	0.34508	1
20q gain	0 (0%)	51	0.28224	1	0.28252	1	0.0071321	1	0.007431	1	0.17027	1	1	1	0.79308	1	0.54676	1
21q gain	0 (0%)	63	0.64565	1	0.15789	1	0.32734	1	0.3326	1	0.19414	1	0.36058	1	0.21886	1	0.51814	1
22q gain	0 (0%)	51	0.88188	1	0.52951	1	0.074818	1	0.1964	1	0.46629	1	1	1	0.85084	1	0.69347	1
Xq gain	0 (0%)	57	1	1	1	1	8.8354e-05	0.0371	0.0041691	1	0.29371	1	0.34107	1	0.68342	1	0.0045201	1
1p loss	0 (0%)	18	0.34162	1	8.2742e-05	0.035	8.2551e-06	0.0036	1.794e-05	0.00777	0.057243	1	0.0010279	0.404	0.10558	1	0.00045425	0.182
1q loss	0 (0%)	19	0.3196	1	0.00013909	0.0576	3.1061e-05	0.0133	6.5948e-05	0.028	0.1267	1	0.0015701	0.606	0.091085	1	0.00040615	0.164
2p loss	0 (0%)	23	0.082806	1	2.888e-06	0.00127	8.3099e-09	3.77e-06	2.255e-07	0.000102	0.067905	1	0.00059168	0.236	0.010654	1	1.0527e-05	0.00458
2q loss	0 (0%)	23	0.082806	1	2.888e-06	0.00127	8.3099e-09	3.77e-06	2.255e-07	0.000102	0.067905	1	0.00059168	0.236	0.010654	1	1.0527e-05	0.00458
3p loss	0 (0%)	59	0.082637	1	1	1	0.25175	1	0.0055363	1	0.48065	1	0.58064	1	0.033386	1	0.0071338	1
3q loss	0 (0%)	60	0.03256	1	0.62074	1	0.13499	1	0.0012588	0.488	0.35405	1	0.58525	1	0.0090103	1	0.0020786	0.792
5p loss	0 (0%)	59	0.30229	1	0.14051	1	0.03288	1	0.0047778	1	0.88593	1	0.58064	1	0.58671	1	0.68575	1
5q loss	0 (0%)	59	0.30229	1	0.14051	1	0.03288	1	0.0047778	1	0.88593	1	0.58064	1	0.58671	1	0.68575	1
6p loss	0 (0%)	19	0.3196	1	0.00013909	0.0576	1.2588e-06	0.000559	2.6697e-05	0.0115	0.1267	1	0.0015701	0.606	0.11406	1	0.00040615	0.164
6q loss	0 (0%)	19	0.3196	1	0.00013909	0.0576	1.2588e-06	0.000559	2.6697e-05	0.0115	0.1267	1	0.0015701	0.606	0.11406	1	0.00040615	0.164
8p loss	0 (0%)	57	8.1131e-08	3.67e-05	0.08572	1	0.053142	1	0.0035954	1	0.14831	1	0.34107	1	0.075743	1	0.12036	1
8q loss	0 (0%)	58	5.8622e-07	0.000262	0.043744	1	0.13361	1	0.0043369	1	0.29061	1	0.58572	1	0.16454	1	0.22405	1
9p loss	0 (0%)	58	1	1	0.88758	1	0.17123	1	0.57907	1	1	1	0.29802	1	0.85731	1	0.42449	1
9q loss	0 (0%)	58	1	1	0.88758	1	0.17123	1	0.57907	1	1	1	0.29802	1	0.85731	1	0.42449	1
10p loss	0 (0%)	22	0.26056	1	0.0032886	1	2.5078e-06	0.00111	3.0256e-06	0.00133	0.39101	1	0.050602	1	0.020046	1	0.00011856	0.0493
10q loss	0 (0%)	22	0.26056	1	0.0032886	1	2.5078e-06	0.00111	3.0256e-06	0.00133	0.39101	1	0.050602	1	0.020046	1	0.00011856	0.0493
11p loss	0 (0%)	61	1	1	0.69621	1	0.1289	1	0.40773	1	0.12033	1	1	1	0.044582	1	0.025167	1
11q loss	0 (0%)	61	1	1	0.69621	1	0.1289	1	0.40773	1	0.12033	1	1	1	0.044582	1	0.025167	1
13q loss	0 (0%)	29	0.11621	1	0.0019101	0.732	0.0012333	0.48	0.00050604	0.202	0.74316	1	0.036005	1	0.93264	1	0.20551	1
16p loss	0 (0%)	63	1	1	0.41794	1	0.012566	1	0.0014772	0.572	1	1	1	1	0.69013	1	1	1
16q loss	0 (0%)	62	0.68502	1	0.3024	1	0.0021853	0.828	8.579e-05	0.0361	0.67766	1	0.45192	1	0.46067	1	1	1
17p loss	0 (0%)	21	0.15807	1	8.7818e-07	0.000392	2.6135e-09	1.19e-06	3.0024e-07	0.000135	0.025584	1	0.00025533	0.104	0.030544	1	2.1139e-05	0.00913
17q loss	0 (0%)	21	0.15807	1	8.7818e-07	0.000392	2.6135e-09	1.19e-06	3.0024e-07	0.000135	0.025584	1	0.00025533	0.104	0.030544	1	2.1139e-05	0.00913
18p loss	0 (0%)	61	0.25683	1	0.10932	1	0.013408	1	0.0012	0.468	0.12033	1	1	1	0.25772	1	0.3672	1
18q loss	0 (0%)	59	0.22153	1	0.14051	1	0.048087	1	0.017848	1	0.20257	1	1	1	0.19131	1	0.4192	1
21q loss	0 (0%)	38	1	1	0.0070441	1	0.22985	1	0.037913	1	0.57534	1	0.72234	1	0.22379	1	0.1594	1
22q loss	0 (0%)	61	0.72059	1	0.10932	1	0.74533	1	0.37957	1	1	1	1	1	0.82636	1	0.67009	1
Xq loss	0 (0%)	33	0.71256	1	9.233e-05	0.0386	7.9561e-05	0.0337	0.00021664	0.0884	0.019042	1	0.0020839	0.792	0.098343	1	0.0010827	0.424