Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(2q32.2)	0 (0%)	124	1.7531e-07	4.51e-05	0.010223	1	0.057963	1	1	1	0.51116	1	0.83023	1	0.29321	1	0.32687	1
Amp Peak  2(2q32.2)	0 (0%)	124	1.7531e-07	4.51e-05	0.010223	1	0.057963	1	1	1	0.51116	1	0.83023	1	0.29321	1	0.32687	1
Amp Peak  3(3p14.1)	0 (0%)	115	1.3034e-18	3.53e-16	0.017926	1	2.9724e-05	0.00722	0.0035738	0.722	0.0030509	0.632	0.20179	1	0.36492	1	0.029223	1
Amp Peak  4(3q22.3)	0 (0%)	105	1.6678e-19	4.54e-17	0.048398	1	0.00016912	0.0394	0.059632	1	0.023061	1	0.2678	1	0.32437	1	0.044927	1
Amp Peak  5(5q35.2)	0 (0%)	134	1.9226e-05	0.00471	0.022597	1	0.070275	1	0.0008128	0.18	0.033044	1	0.21763	1	0.070624	1	0.39419	1
Amp Peak  6(6p12.3)	0 (0%)	152	0.19998	1	0.02044	1	0.55584	1	0.15241	1	0.53393	1	0.38582	1	0.32042	1	0.51647	1
Amp Peak  7(7q22.1)	0 (0%)	69	2.7525e-09	7.27e-07	4.1315e-07	0.000104	1.0824e-10	2.87e-08	2.6357e-08	6.85e-06	0.0038468	0.769	0.078667	1	0.18604	1	0.071936	1
Amp Peak  8(16p11.2)	0 (0%)	73	2.1033e-12	5.62e-10	0.43117	1	0.014853	1	0.011732	1	0.08963	1	0.054638	1	0.026096	1	0.053846	1
Amp Peak  9(17q25.2)	0 (0%)	46	2.1725e-05	0.0053	0.03434	1	0.00075084	0.167	0.0036974	0.743	0.64203	1	0.86912	1	0.5527	1	0.60175	1
Amp Peak 10(19p13.2)	0 (0%)	142	0.70507	1	0.040683	1	0.049738	1	0.32082	1	0.98063	1	0.88872	1	0.92667	1	0.36808	1
Del Peak  1(1p36.31)	0 (0%)	124	4.5124e-11	1.2e-08	0.00087698	0.191	3.1407e-06	0.000782	0.016567	1	0.2138	1	0.49153	1	0.70102	1	0.67007	1
Del Peak  2(2q36.3)	0 (0%)	151	0.018349	1	0.0031211	0.64	0.49687	1	0.13766	1	0.46111	1	1	1	0.25724	1	0.37516	1
Del Peak  3(3p22.1)	0 (0%)	145	1.261e-05	0.00311	1.9757e-07	5.04e-05	0.001573	0.335	3.7615e-05	0.00907	0.0081493	1	0.073208	1	0.12391	1	0.0008442	0.185
Del Peak  4(4q32.1)	0 (0%)	135	1.5675e-08	4.11e-06	1.9513e-08	5.09e-06	2.9076e-07	7.39e-05	0.0014635	0.315	0.11015	1	0.51589	1	0.89533	1	0.080564	1
Del Peak  5(5p14.2)	0 (0%)	147	0.019562	1	0.0081115	1	0.15005	1	0.0058488	1	0.22792	1	0.42697	1	0.56988	1	0.56723	1
Del Peak  6(5q15)	0 (0%)	147	0.062826	1	0.0081115	1	0.015025	1	0.00028543	0.0656	0.73185	1	0.037634	1	0.65562	1	0.056022	1
Del Peak  7(5q35.2)	0 (0%)	147	0.017074	1	5.4489e-05	0.013	0.00064415	0.144	6.2124e-06	0.00154	0.17944	1	0.037634	1	0.56988	1	0.097902	1
Del Peak  8(6p12.3)	0 (0%)	143	0.0043043	0.855	0.0030096	0.626	0.17745	1	0.44756	1	0.76553	1	0.93317	1	1	1	0.36141	1
Del Peak  9(6q22.31)	0 (0%)	142	0.0074732	1	0.0042955	0.855	0.0083998	1	0.052666	1	0.40143	1	0.25852	1	0.32987	1	0.049616	1
Del Peak 10(6q25.3)	0 (0%)	141	0.00042626	0.0968	0.00017877	0.0415	0.014213	1	0.085213	1	0.76399	1	0.29614	1	0.77359	1	0.13445	1
Del Peak 11(9p21.3)	0 (0%)	134	1.6843e-06	0.000423	2.9903e-08	7.74e-06	1.2205e-08	3.21e-06	0.00014894	0.0352	0.047418	1	0.11172	1	0.10004	1	0.0023216	0.485
Del Peak 12(11q22.3)	0 (0%)	142	0.00046829	0.105	0.00057732	0.129	0.00044071	0.0996	0.00015275	0.0359	0.50216	1	0.12278	1	0.47263	1	0.031452	1
Del Peak 13(11q24.2)	0 (0%)	141	0.0032248	0.658	0.00017877	0.0415	0.0017369	0.366	0.001142	0.248	0.27889	1	0.064635	1	0.61916	1	0.051896	1
Del Peak 14(14q11.2)	0 (0%)	123	2.4785e-13	6.67e-11	0.08133	1	0.0049249	0.965	0.043259	1	0.91679	1	0.52666	1	0.85497	1	0.34557	1
Del Peak 15(14q32.2)	0 (0%)	123	5.2392e-13	1.4e-10	0.050763	1	0.00083654	0.184	0.014709	1	0.90058	1	0.35405	1	0.85497	1	0.34557	1
Del Peak 16(14q32.2)	0 (0%)	123	1.291e-14	3.49e-12	0.014146	1	0.00037556	0.086	0.0051919	1	0.90058	1	0.35405	1	0.85497	1	0.34557	1
Del Peak 17(15q15.1)	0 (0%)	137	5.2156e-05	0.0125	0.0031067	0.64	0.00041472	0.0946	0.029345	1	0.27697	1	0.2228	1	0.39989	1	0.075816	1
Del Peak 18(16q24.1)	0 (0%)	151	0.072919	1	0.0044783	0.882	0.035239	1	0.0021169	0.445	0.10219	1	0.3781	1	1	1	0.18095	1
Del Peak 19(19p13.3)	0 (0%)	142	0.00016786	0.0393	0.0073103	1	0.056018	1	0.014788	1	0.80058	1	0.11505	1	0.25843	1	0.14061	1
Del Peak 20(19q13.2)	0 (0%)	144	0.0096151	1	0.017647	1	0.014677	1	0.0083247	1	0.13267	1	0.38282	1	0.034012	1	0.40832	1
Del Peak 21(19q13.42)	0 (0%)	143	0.018515	1	0.02899	1	0.045375	1	0.031117	1	0.53748	1	0.38282	1	0.15151	1	0.89992	1
Del Peak 22(22q12.2)	0 (0%)	118	1.7571e-06	0.000439	1.4273e-05	0.00351	0.00011053	0.0262	0.0035359	0.718	0.12641	1	0.050729	1	0.27813	1	0.498	1
Del Peak 23(Xq21.31)	0 (0%)	136	8.0124e-08	2.07e-05	3.6737e-05	0.00889	5.1598e-05	0.0124	0.0016355	0.347	0.15378	1	0.14149	1	0.15077	1	0.0086975	1
Del Peak 24(Xq28)	0 (0%)	137	3.2047e-07	8.11e-05	0.0012332	0.266	0.0015087	0.323	0.018488	1	0.27697	1	0.5189	1	0.45081	1	0.051896	1