Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Chi-square test_P	Chi-square test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	0 (0%)	188	0.0013537	0.153	0.18478	1	0.18603	1	0.55157	1	0.092257	1	0.04811	1
4p gain	0 (0%)	187	9.8227e-05	0.0115	0.050229	1	NA	NA	0.5502	1	0.3426	1	0.83052	1
4q gain	0 (0%)	187	9.8227e-05	0.0115	0.050229	1	NA	NA	0.5502	1	0.3426	1	0.83052	1
8p gain	0 (0%)	171	2.4411e-05	0.00295	0.0018883	0.21	0.067358	1	0.012575	1	0.012406	1	0.15658	1
8q gain	0 (0%)	170	6.4215e-05	0.00764	0.0050927	0.509	0.043386	1	0.012475	1	0.007168	0.695	0.22335	1
10q gain	0 (0%)	188	0.00097938	0.113	0.18478	1	0.18603	1	0.55157	1	0.5517	1	0.22204	1
11p gain	0 (0%)	187	3.3246e-15	4.29e-13	0.080833	1	0.46718	1	1	1	0.52305	1	0.070351	1
11q gain	0 (0%)	184	9.4225e-12	1.21e-09	0.0051592	0.511	0.066765	1	0.42513	1	0.29073	1	0.27065	1
13q gain	0 (0%)	188	0.0035451	0.369	0.18478	1	0.18603	1	0.55157	1	0.5517	1	0.22204	1
17q gain	0 (0%)	188	6.8145e-06	0.000831	0.38025	1	1	1	0.55157	1	0.4823	1	0.22204	1
19p gain	0 (0%)	186	0.03425	1	0.63341	1	1	1	1	1	0.6506	1	0.60712	1
19q gain	0 (0%)	186	0.03425	1	0.63341	1	1	1	1	1	0.6506	1	0.60712	1
21q gain	0 (0%)	183	2.6227e-15	3.41e-13	0.20272	1	0.12442	1	1	1	0.081431	1	0.19779	1
22q gain	0 (0%)	183	0.0040585	0.414	0.02056	1	0.034901	1	0.2687	1	0.065071	1	0.049262	1
5q loss	0 (0%)	185	6.0988e-11	7.75e-09	0.013373	1	0.22428	1	0.66376	1	0.031835	1	0.020544	1
7p loss	0 (0%)	176	1.6107e-06	0.000198	0.0017039	0.191	0.0027746	0.297	0.0027858	0.297	0.026918	1	0.0026465	0.286
7q loss	0 (0%)	173	6.3349e-08	7.86e-06	9.2331e-05	0.0109	0.027182	1	0.021068	1	0.012224	1	0.0009901	0.113
12p loss	0 (0%)	188	0.019052	1	0.032594	1	0.61833	1	0.55157	1	0.79304	1	0.22204	1
17p loss	0 (0%)	181	2.1971e-10	2.77e-08	0.0025543	0.281	0.07521	1	0.16676	1	0.0054083	0.53	0.0045109	0.456
17q loss	0 (0%)	186	4.9413e-10	6.18e-08	0.033545	1	0.22428	1	0.66376	1	0.0033546	0.352	0.0025755	0.281
18p loss	0 (0%)	186	5.1738e-05	0.00621	0.033545	1	1	1	1	1	0.24839	1	0.32877	1
18q loss	0 (0%)	188	0.0035451	0.369	0.18478	1	0.78607	1	1	1	0.061789	1	0.04811	1