Molecular subtypes MRNA_CNMF MRNA_CHIERARCHICAL CN_CNMF METHLYATION_CNMF RPPA_CNMF RPPA_CHIERARCHICAL MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Chi-square test_P Chi-square test_Q Fisher's exact test_P Fisher's exact test_Q Chi-square test_P Chi-square test_Q Fisher's exact test_P Fisher's exact test_Q 1p gain 0 (0%) 261 NA NA NA NA 0.013259 1 0.0076514 1 0.074799 1 0.74032 1 0.00022014 0.12 0.031686 1 0.27774 1 0.016954 1 0.006396 1 0.0032324 1 1q gain 0 (0%) 259 NA NA NA NA 0.00034861 0.187 0.012343 1 0.46396 1 1 1 0.099882 1 0.27922 1 0.38985 1 0.25204 1 0.033126 1 0.12501 1 3p gain 0 (0%) 266 NA NA NA NA 1 1 0.83932 1 NA NA NA NA 0.39652 1 0.24486 1 0.23886 1 0.37225 1 0.00082987 0.434 0.55144 1 3q gain 0 (0%) 266 NA NA NA NA 0.17098 1 0.21131 1 NA NA NA NA 0.065497 1 0.38741 1 0.23886 1 0.37225 1 0.00032229 0.173 0.032117 1 4p gain 0 (0%) 265 NA NA NA NA 0.022147 1 0.30897 1 0.53118 1 1 1 0.26919 1 1 1 0.48268 1 0.14482 1 0.018295 1 0.51517 1 6p gain 0 (0%) 266 NA NA NA NA 0.014621 1 0.62553 1 NA NA NA NA 0.065497 1 0.38741 1 0.20277 1 0.07945 1 1.812e-16 1.13e-13 0.19634 1 7p gain 0 (0%) 219 0.17504 1 0.65299 1 4.0388e-26 2.53e-23 8.9317e-13 5.48e-10 5.4582e-05 0.0306 0.0077467 1 1.0413e-06 0.000606 6.2107e-05 0.0348 0.0042677 1 1.0227e-06 0.000597 1.4955e-05 0.00851 3.7076e-11 2.25e-08 7q gain 0 (0%) 201 0.28205 1 0.38205 1 2.569e-23 1.6e-20 2.5409e-11 1.54e-08 0.0023038 1 0.053423 1 1.6539e-05 0.00939 0.00022286 0.121 0.010015 1 0.00093876 0.489 0.00026618 0.145 1.7923e-08 1.08e-05 8p gain 0 (0%) 252 NA NA NA NA 0.00030831 0.166 0.07606 1 0.11736 1 0.78344 1 0.20103 1 0.40541 1 0.28131 1 0.84316 1 0.31456 1 0.1551 1 8q gain 0 (0%) 247 NA NA NA NA 3.0487e-05 0.0172 0.015834 1 0.025133 1 0.41431 1 0.10975 1 0.062371 1 0.097502 1 0.70213 1 0.29005 1 0.0086456 1 9p gain 0 (0%) 263 NA NA NA NA 0.047086 1 0.29845 1 0.32226 1 0.53058 1 0.3333 1 0.86148 1 0.61426 1 0.34039 1 0.072795 1 0.32183 1 9q gain 0 (0%) 260 NA NA NA NA 0.0084793 1 0.090212 1 0.17332 1 1 1 0.039258 1 0.3545 1 0.21451 1 0.57597 1 0.03438 1 0.34132 1 10p gain 0 (0%) 245 NA NA NA NA 7.4204e-05 0.0414 2.0247e-06 0.00117 0.13617 1 0.41431 1 0.96358 1 0.052314 1 0.73094 1 0.55357 1 0.093896 1 0.22868 1 11p gain 0 (0%) 258 NA NA NA NA 0.85948 1 0.29016 1 0.10964 1 0.68023 1 0.20685 1 0.011308 1 0.33616 1 0.86971 1 0.068686 1 0.19235 1 11q gain 0 (0%) 254 NA NA NA NA 0.30272 1 0.24112 1 0.026694 1 0.19578 1 0.31847 1 0.049811 1 0.51906 1 0.6656 1 0.15498 1 0.049133 1 12p gain 0 (0%) 256 NA NA NA NA 0.00076284 0.4 0.30017 1 0.56537 1 1 1 0.034127 1 0.048648 1 0.24686 1 0.083903 1 0.0025703 1 0.044149 1 12q gain 0 (0%) 264 NA NA NA NA 0.09788 1 1 1 0.28625 1 0.72145 1 0.16583 1 0.22023 1 0.40454 1 0.14635 1 0.018079 1 0.051906 1 18p gain 0 (0%) 262 NA NA NA NA 0.2337 1 0.66874 1 0.092496 1 0.77096 1 0.15934 1 0.24787 1 0.51645 1 0.79629 1 0.91881 1 0.68097 1 18q gain 0 (0%) 265 NA NA NA NA 0.14969 1 0.22953 1 0.053026 1 1 1 0.02098 1 0.19613 1 0.66715 1 0.30468 1 0.7669 1 0.51517 1 19p gain 0 (0%) 252 NA NA NA NA 1.3307e-07 7.89e-05 1.8193e-08 1.09e-05 0.024833 1 0.047244 1 0.00012186 0.0673 8.4094e-05 0.0466 0.0094415 1 0.0015678 0.803 5.0052e-05 0.0281 3.9224e-08 2.35e-05 19q gain 0 (0%) 257 NA NA NA NA 1.3238e-05 0.00755 2.3781e-06 0.00138 0.022636 1 0.38286 1 0.00144 0.743 0.0029558 1 0.016932 1 0.0056717 1 1.683e-05 0.00954 2.4412e-06 0.00141 20p gain 0 (0%) 249 NA NA NA NA 6.768e-07 0.000397 5.3072e-08 3.17e-05 0.0042699 1 0.38371 1 0.00055323 0.295 0.04185 1 0.087327 1 0.0014444 0.744 7.4182e-06 0.00426 1.2103e-07 7.19e-05 20q gain 0 (0%) 249 NA NA NA NA 6.768e-07 0.000397 6.3824e-08 3.8e-05 0.00012303 0.0678 0.23676 1 6.6572e-06 0.00383 0.0013281 0.687 0.0042563 1 0.00017362 0.095 6.2549e-07 0.000368 1.8607e-09 1.12e-06 21q gain 0 (0%) 263 NA NA NA NA 0.08082 1 0.078862 1 0.11375 1 0.46484 1 0.11862 1 0.095391 1 0.29823 1 0.45203 1 0.18761 1 0.076118 1 1p loss 0 (0%) 192 0.0036069 1 8.7479e-06 0.00501 1.8245e-25 1.14e-22 4.624e-58 2.92e-55 7.6202e-05 0.0424 0.031607 1 1.9865e-14 1.23e-11 1.2446e-35 7.84e-33 3.3407e-11 2.03e-08 8.7477e-08 5.2e-05 1.8912e-13 1.16e-10 3.1033e-10 1.88e-07 1q loss 0 (0%) 259 0.088889 1 0.020171 1 0.050156 1 0.00017211 0.0943 0.017608 1 1 1 0.03526 1 0.00010704 0.0592 0.00058428 0.309 0.85448 1 0.0024942 1 0.086887 1 2p loss 0 (0%) 263 NA NA NA NA 0.0051798 1 1 1 0.20232 1 1 1 0.02085 1 0.1776 1 0.6201 1 0.45203 1 0.56287 1 0.86423 1 2q loss 0 (0%) 265 NA NA NA NA 0.052207 1 0.79808 1 0.37792 1 1 1 0.33072 1 0.2733 1 0.50342 1 0.70761 1 0.84936 1 0.38315 1 3p loss 0 (0%) 259 NA NA NA NA 0.0022615 1 0.1784 1 0.0022516 1 0.070515 1 0.00030477 0.165 0.0086564 1 0.061327 1 0.30477 1 0.023318 1 0.037147 1 3q loss 0 (0%) 256 0.17504 1 0.56068 1 5.8695e-06 0.00338 0.050426 1 0.079803 1 0.047244 1 0.040515 1 0.073961 1 0.21356 1 0.47151 1 0.42035 1 0.049435 1 4p loss 0 (0%) 251 0.41538 1 0.090655 1 0.00056406 0.3 1.0326e-06 0.000602 0.72476 1 0.62829 1 0.00040785 0.219 2.9603e-06 0.00171 0.00045234 0.242 0.84966 1 0.0091184 1 0.1498 1 4q loss 0 (0%) 241 0.83946 1 0.40412 1 0.00057246 0.304 9.7797e-06 0.00558 0.61242 1 0.63398 1 0.00028329 0.154 6.2599e-05 0.035 0.00073424 0.386 0.88738 1 0.00055854 0.298 0.056291 1 5p loss 0 (0%) 256 1 1 0.042005 1 0.0042866 1 0.2034 1 0.61053 1 1 1 0.88058 1 0.44542 1 0.34963 1 0.70197 1 0.052091 1 0.80554 1 5q loss 0 (0%) 258 0.41538 1 0.0022792 1 0.0018059 0.923 0.16459 1 0.02032 1 1 1 0.17687 1 0.17859 1 0.28011 1 0.4045 1 0.0012768 0.661 0.34973 1 6p loss 0 (0%) 259 NA NA NA NA 0.12172 1 0.0074655 1 0.096006 1 0.80639 1 0.23291 1 1 1 0.45227 1 0.08772 1 0.66208 1 0.0080649 1 6q loss 0 (0%) 237 NA NA NA NA 0.00015816 0.087 0.019984 1 0.22263 1 0.87936 1 0.49671 1 0.19949 1 0.0015035 0.771 0.56128 1 0.70256 1 0.10495 1 8p loss 0 (0%) 263 NA NA NA NA 0.017563 1 0.0588 1 0.2318 1 0.46484 1 0.3333 1 0.41857 1 0.61426 1 0.193 1 0.30734 1 0.045487 1 8q loss 0 (0%) 265 NA NA NA NA 0.14969 1 0.0040437 1 0.79242 1 1 1 0.26919 1 1 1 0.48268 1 0.087962 1 0.71968 1 0.035246 1 9p loss 0 (0%) 220 0.051852 1 0.65299 1 9.1235e-06 0.00522 0.024253 1 0.04893 1 0.051927 1 0.86597 1 0.42202 1 0.82737 1 0.23568 1 0.60417 1 0.44787 1 9q loss 0 (0%) 262 NA NA NA NA 0.099723 1 0.032015 1 0.95403 1 0.29872 1 0.50845 1 0.0088336 1 0.034319 1 0.79629 1 0.0090096 1 0.38657 1 10p loss 0 (0%) 233 0.27077 1 0.56068 1 1.4156e-15 8.78e-13 4.7411e-27 2.98e-24 3.897e-07 0.00023 0.00060856 0.321 2.3772e-11 1.45e-08 4.5323e-05 0.0255 0.0088803 1 5.8137e-07 0.000342 2.1861e-13 1.34e-10 1.4392e-13 8.87e-11 10q loss 0 (0%) 231 0.27077 1 0.56068 1 1.2027e-14 7.44e-12 7.6212e-25 4.76e-22 1.7599e-06 0.00102 0.0009405 0.489 2.442e-11 1.49e-08 7.5391e-05 0.042 0.0063103 1 2.1305e-07 0.000126 2.106e-12 1.29e-09 7.1189e-14 4.39e-11 11p loss 0 (0%) 244 0.81538 1 0.10604 1 2.1394e-08 1.28e-05 0.0002158 0.118 0.029808 1 0.61217 1 0.0071796 1 0.0090434 1 0.0034132 1 0.64668 1 0.00016837 0.0924 0.12343 1 11q loss 0 (0%) 262 NA NA NA NA 0.018206 1 0.32767 1 0.02604 1 1 1 0.015747 1 0.24787 1 0.34415 1 0.79629 1 0.012155 1 0.68097 1 12p loss 0 (0%) 265 NA NA NA NA 0.33845 1 0.71435 1 0.34312 1 1 1 0.55662 1 0.80279 1 0.97341 1 0.22062 1 0.014376 1 0.81139 1 12q loss 0 (0%) 258 NA NA NA NA 0.0095958 1 0.1213 1 0.36444 1 0.32262 1 0.12738 1 0.35401 1 0.36802 1 0.15096 1 0.23274 1 0.54008 1 13q loss 0 (0%) 238 1 1 0.013836 1 6.3399e-19 3.94e-16 0.064183 1 0.09679 1 0.93915 1 0.39524 1 0.15895 1 0.63209 1 0.61263 1 0.66474 1 0.18709 1 14q loss 0 (0%) 241 NA NA NA NA 0.019477 1 0.00057183 0.304 0.071871 1 0.28232 1 0.013443 1 0.11039 1 0.0034994 1 0.0052185 1 0.04919 1 0.16097 1 15q loss 0 (0%) 253 NA NA NA NA 0.31684 1 0.00097389 0.505 0.51255 1 0.037085 1 0.76542 1 0.0048281 1 0.49449 1 0.91576 1 0.24047 1 0.69256 1 16p loss 0 (0%) 266 NA NA NA NA 0.069256 1 0.62553 1 0.28614 1 0.31675 1 1 1 1 1 0.57323 1 0.14563 1 0.91114 1 0.12405 1 16q loss 0 (0%) 262 NA NA NA NA 0.040566 1 0.027709 1 0.069447 1 0.35269 1 0.15934 1 0.24787 1 0.76396 1 0.14159 1 0.28019 1 0.1981 1 17p loss 0 (0%) 265 NA NA NA NA 0.1707 1 0.12542 1 0.19674 1 1 1 0.02098 1 0.19613 1 0.49568 1 0.30468 1 0.20928 1 0.21767 1 18p loss 0 (0%) 248 0.34359 1 0.21231 1 0.023974 1 0.010105 1 0.66413 1 0.13129 1 0.74699 1 0.36659 1 0.074392 1 0.20829 1 0.3201 1 0.11597 1 18q loss 0 (0%) 249 0.088889 1 0.046838 1 0.018771 1 0.00085384 0.446 0.28186 1 0.23406 1 0.51785 1 0.087899 1 0.077778 1 0.52899 1 0.25475 1 0.17935 1 19p loss 0 (0%) 262 0.61538 1 0.11658 1 0.52498 1 0.13513 1 1 1 0.068282 1 0.29927 1 0.09696 1 0.10067 1 0.40281 1 0.18445 1 0.68097 1 19q loss 0 (0%) 184 0.2997 1 0.040422 1 2.6962e-23 1.68e-20 1.1151e-43 7.04e-41 0.00031244 0.168 0.081467 1 1.0983e-12 6.72e-10 1.3665e-29 8.6e-27 1.5397e-07 9.11e-05 6.3638e-07 0.000374 6.2831e-10 3.79e-07 3.4649e-08 2.08e-05 20p loss 0 (0%) 266 NA NA NA NA 0.31196 1 0.62553 1 0.79242 1 1 1 1 1 1 1 0.30848 1 0.64128 1 0.76049 1 0.7597 1 21q loss 0 (0%) 258 NA NA NA NA 0.098898 1 0.67352 1 0.3985 1 0.68023 1 0.43658 1 0.17859 1 0.10516 1 0.0078282 1 0.34736 1 0.45431 1 22q loss 0 (0%) 249 1 1 0.087863 1 1.9665e-05 0.0111 2.3756e-05 0.0134 7.6197e-05 0.0424 0.071145 1 0.00059521 0.314 0.0014584 0.75 0.0099591 1 0.25386 1 0.00076223 0.4 0.0077609 1 Xq loss 0 (0%) 263 NA NA NA NA 0.047086 1 0.29845 1 0.6368 1 0.35269 1 0.3333 1 0.41857 1 0.18198 1 0.002087 1 0.58893 1 0.076118 1