Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	0 (0%)	124	0.15319	1	0.86912	1	0.0059983	1	0.067533	1	0.32255	1	0.57357	1	0.63387	1	0.79409	1
1q gain	0 (0%)	68	0.00064618	0.392	0.0024789	1	0.13234	1	0.030228	1	0.27288	1	0.68772	1	0.061309	1	0.75511	1
2p gain	0 (0%)	130	0.17061	1	0.25031	1	0.14687	1	0.5044	1	0.38852	1	0.78383	1	0.54697	1	0.79143	1
2q gain	0 (0%)	132	0.43902	1	0.067676	1	0.067315	1	0.41794	1	0.45915	1	0.63536	1	0.60574	1	1	1
3p gain	0 (0%)	132	0.49584	1	0.6556	1	0.59224	1	0.45611	1	0.27124	1	0.47552	1	0.57424	1	1	1
3q gain	0 (0%)	132	0.49584	1	0.6556	1	0.59224	1	0.45611	1	0.27124	1	0.47552	1	0.57424	1	1	1
4p gain	0 (0%)	134	0.62952	1	0.26654	1	0.049424	1	0.20585	1	0.71136	1	1	1	0.29941	1	1	1
5p gain	0 (0%)	102	0.020937	1	0.12587	1	0.38388	1	0.34495	1	0.67447	1	0.8158	1	0.87391	1	0.63972	1
5q gain	0 (0%)	113	0.11287	1	0.51794	1	0.3883	1	0.52886	1	0.83953	1	1	1	0.67234	1	0.765	1
6p gain	0 (0%)	115	0.027691	1	0.020564	1	0.84289	1	0.50461	1	0.90479	1	0.8478	1	0.13336	1	0.89789	1
6q gain	0 (0%)	125	0.28738	1	0.23178	1	0.82077	1	0.49854	1	0.66402	1	0.65495	1	0.2687	1	0.85228	1
7p gain	0 (0%)	107	0.0969	1	0.48361	1	0.49886	1	0.55427	1	0.10712	1	0.087859	1	0.36194	1	0.28308	1
7q gain	0 (0%)	104	0.20618	1	0.011	1	0.2558	1	0.32094	1	0.027613	1	0.062664	1	0.23341	1	0.26428	1
8p gain	0 (0%)	122	0.46576	1	0.83042	1	0.3095	1	0.052643	1	0.85432	1	0.93191	1	0.88622	1	0.80225	1
8q gain	0 (0%)	82	6.7906e-11	4.16e-08	0.55103	1	0.0095106	1	0.28254	1	0.012849	1	0.15047	1	0.06038	1	0.19276	1
9p gain	0 (0%)	135	0.5555	1	0.47862	1	0.094654	1	0.4058	1	0.38306	1	0.22149	1	0.14121	1	0.25585	1
9q gain	0 (0%)	136	0.63243	1	0.79274	1	0.2576	1	0.78706	1	0.1794	1	0.34427	1	0.31277	1	0.51006	1
10p gain	0 (0%)	127	0.80204	1	0.24776	1	0.73259	1	0.14692	1	0.73585	1	0.62272	1	0.79184	1	0.46976	1
10q gain	0 (0%)	131	0.10525	1	0.034466	1	0.39837	1	0.18101	1	0.19891	1	0.49158	1	1	1	0.76888	1
11p gain	0 (0%)	136	0.28	1	0.79274	1	0.56712	1	0.58574	1	0.12249	1	1	1	0.45264	1	1	1
11q gain	0 (0%)	136	0.49851	1	0.2499	1	NA	NA	NA	NA	0.3082	1	1	1	1	1	0.51006	1
12p gain	0 (0%)	135	0.45505	1	0.81002	1	0.10001	1	0.042069	1	0.74359	1	1	1	0.81636	1	0.78635	1
12q gain	0 (0%)	133	0.23952	1	0.76255	1	0.18801	1	0.41794	1	0.58013	1	1	1	0.41208	1	0.71406	1
13q gain	0 (0%)	133	0.0039971	1	0.2829	1	0.31147	1	0.1292	1	0.14432	1	0.85066	1	0.19111	1	1	1
14q gain	0 (0%)	133	0.32603	1	0.16561	1	0.53407	1	0.55989	1	0.87058	1	0.19896	1	0.76511	1	0.39279	1
15q gain	0 (0%)	131	0.81846	1	1	1	0.70585	1	0.6324	1	0.46062	1	0.12991	1	0.63376	1	0.26539	1
16p gain	0 (0%)	135	0.036769	1	0.47862	1	0.33265	1	1	1	0.625	1	0.76981	1	0.55673	1	1	1
17p gain	0 (0%)	133	0.7683	1	0.11502	1	0.97862	1	0.29303	1	0.84798	1	1	1	1	1	1	1
17q gain	0 (0%)	111	0.045919	1	0.58323	1	0.58265	1	0.38038	1	0.93838	1	0.59162	1	0.43652	1	0.25065	1
18p gain	0 (0%)	133	0.15391	1	0.21226	1	0.18801	1	0.1292	1	0.34973	1	0.7123	1	0.41208	1	0.85166	1
18q gain	0 (0%)	132	0.1128	1	0.086651	1	0.10147	1	0.069778	1	0.30343	1	0.87137	1	0.23074	1	0.75122	1
19p gain	0 (0%)	128	0.4882	1	0.0077618	1	0.17882	1	0.084667	1	0.41043	1	0.38941	1	0.714	1	0.60317	1
19q gain	0 (0%)	125	0.46549	1	0.0010127	0.61	0.046945	1	0.026309	1	0.26322	1	0.25477	1	0.35957	1	0.37141	1
20p gain	0 (0%)	112	0.14235	1	0.14951	1	0.037868	1	0.38038	1	0.35631	1	0.70532	1	0.69088	1	0.7818	1
20q gain	0 (0%)	111	0.098016	1	0.28481	1	0.082751	1	0.75236	1	0.81915	1	1	1	0.96122	1	0.78818	1
21q gain	0 (0%)	133	1	1	0.26654	1	0.39257	1	0.41794	1	0.71982	1	1	1	1	1	1	1
22q gain	0 (0%)	130	0.62665	1	0.72794	1	0.1338	1	0.43996	1	0.38852	1	0.78383	1	1	1	0.62143	1
Xq gain	0 (0%)	131	0.42756	1	0.087319	1	0.057489	1	0.050968	1	0.032521	1	0.022439	1	0.043388	1	0.043106	1
1p loss	0 (0%)	121	1	1	0.023877	1	0.061972	1	0.3352	1	0.25272	1	0.35922	1	0.64023	1	0.24099	1
1q loss	0 (0%)	134	0.85492	1	0.19585	1	0.13998	1	0.26642	1	0.45782	1	0.81113	1	0.18449	1	1	1
2p loss	0 (0%)	135	0.25744	1	0.58549	1	0.094654	1	0.52374	1	0.38306	1	0.76981	1	0.68338	1	1	1
2q loss	0 (0%)	133	0.049381	1	0.16896	1	0.016889	1	0.55989	1	0.20492	1	0.52782	1	0.50924	1	0.81511	1
3p loss	0 (0%)	127	0.061015	1	0.083629	1	0.00072844	0.441	0.0066792	1	0.084212	1	0.3061	1	0.15779	1	0.041318	1
3q loss	0 (0%)	133	0.15391	1	0.05192	1	0.11291	1	0.1292	1	0.32062	1	1	1	0.41208	1	0.71406	1
4p loss	0 (0%)	124	0.0021722	1	0.019498	1	0.0082469	1	0.41991	1	0.25332	1	0.79312	1	0.072267	1	1	1
4q loss	0 (0%)	109	0.00010398	0.0635	0.0006509	0.394	0.058215	1	0.48035	1	0.60792	1	0.6996	1	0.51107	1	0.91542	1
5p loss	0 (0%)	136	0.49851	1	NA	NA	0.34695	1	0.39991	1	0.41412	1	0.47809	1	0.31277	1	0.2228	1
5q loss	0 (0%)	131	0.31191	1	0.086651	1	0.89571	1	0.56792	1	0.46534	1	0.58023	1	0.32624	1	0.37272	1
6p loss	0 (0%)	134	0.43939	1	0.61463	1	0.30864	1	0.61044	1	0.15443	1	0.4134	1	0.50924	1	0.67336	1
6q loss	0 (0%)	108	0.066685	1	0.92265	1	0.061018	1	0.43603	1	0.06504	1	0.82961	1	0.020354	1	0.79056	1
7p loss	0 (0%)	133	0.87657	1	0.52039	1	0.49329	1	1	1	0.44186	1	0.30819	1	0.26239	1	0.10072	1
7q loss	0 (0%)	129	0.29232	1	1	1	0.12915	1	0.56515	1	0.41259	1	0.51564	1	0.39122	1	0.08532	1
8p loss	0 (0%)	83	1.4919e-09	9.13e-07	0.07073	1	0.53936	1	0.55392	1	0.67456	1	0.20408	1	0.66399	1	0.086526	1
8q loss	0 (0%)	129	0.0015421	0.922	0.30404	1	0.32062	1	0.21829	1	0.25836	1	0.27259	1	0.43176	1	0.72583	1
9p loss	0 (0%)	112	0.027372	1	0.76439	1	0.27775	1	0.842	1	0.98351	1	0.95247	1	0.92287	1	0.86621	1
9q loss	0 (0%)	113	0.0015096	0.904	0.38437	1	0.14679	1	0.91884	1	0.76917	1	0.7714	1	0.46145	1	0.7773	1
10p loss	0 (0%)	131	0.010328	1	0.31615	1	0.071344	1	0.20385	1	0.82931	1	1	1	0.25112	1	1	1
10q loss	0 (0%)	115	0.0010452	0.628	0.53265	1	0.16449	1	0.43969	1	0.43733	1	0.59013	1	0.18304	1	0.69114	1
11p loss	0 (0%)	129	0.093343	1	0.10149	1	0.13609	1	0.23533	1	0.60994	1	1	1	0.22185	1	0.89593	1
11q loss	0 (0%)	126	0.40575	1	0.92672	1	0.082005	1	0.24778	1	0.36822	1	0.70304	1	0.10327	1	0.83925	1
12p loss	0 (0%)	124	0.014085	1	0.11944	1	0.021925	1	0.48187	1	0.80523	1	0.76685	1	0.26021	1	0.91829	1
12q loss	0 (0%)	135	0.25744	1	0.79274	1	0.25066	1	0.071552	1	0.8673	1	0.76981	1	0.68338	1	1	1
13q loss	0 (0%)	98	0.00084726	0.512	0.42778	1	0.0012376	0.743	0.19083	1	0.07296	1	0.54787	1	0.051359	1	0.59321	1
14q loss	0 (0%)	105	0.0088428	1	0.35823	1	0.041109	1	0.006401	1	0.71561	1	0.80787	1	0.25201	1	0.91925	1
15q loss	0 (0%)	124	0.17414	1	0.038683	1	0.72841	1	0.87733	1	0.32255	1	0.060403	1	0.72673	1	0.14105	1
16p loss	0 (0%)	110	0.21314	1	0.024371	1	0.0029298	1	0.00051841	0.315	0.00090474	0.546	0.0024446	1	0.22191	1	0.0053326	1
16q loss	0 (0%)	100	0.030497	1	0.0002046	0.125	0.0075013	1	0.0081647	1	0.015583	1	0.0040702	1	0.56209	1	0.0071603	1
17p loss	0 (0%)	86	0.00021287	0.13	0.069159	1	0.015529	1	0.73235	1	0.0049154	1	0.0042651	1	0.029387	1	0.027486	1
17q loss	0 (0%)	132	0.022698	1	0.086651	1	0.58202	1	0.87472	1	0.85572	1	0.38801	1	1	1	0.58794	1
18p loss	0 (0%)	123	0.28035	1	0.0041399	1	0.73555	1	0.73179	1	0.5772	1	0.68707	1	0.69483	1	0.69277	1
18q loss	0 (0%)	120	0.049672	1	0.0053589	1	0.11695	1	0.68369	1	0.39757	1	0.64282	1	0.40386	1	0.43343	1
19p loss	0 (0%)	130	0.62665	1	0.052353	1	0.43856	1	0.58647	1	0.42154	1	1	1	0.71509	1	1	1
19q loss	0 (0%)	135	1	1	0.79274	1	0.46656	1	0.82965	1	0.1794	1	0.34427	1	1	1	0.51006	1
20p loss	0 (0%)	133	0.15391	1	0.52039	1	0.56289	1	0.55989	1	0.52301	1	0.2422	1	0.86202	1	0.20233	1
21q loss	0 (0%)	115	0.20414	1	0.91186	1	0.18626	1	0.12115	1	0.49847	1	0.21746	1	0.67234	1	0.34263	1
22q loss	0 (0%)	121	0.5388	1	0.36173	1	0.30318	1	0.9442	1	0.27218	1	0.43718	1	0.84682	1	0.67243	1
Xq loss	0 (0%)	136	0.11081	1	0.79274	1	0.038797	1	0.2172	1	0.65234	1	0.22756	1	0.31277	1	0.2228	1