Molecular subtypes CN_CNMF METHLYATION_CNMF MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Chi-square test_P Chi-square test_Q Fisher's exact test_P Fisher's exact test_Q Chi-square test_P Chi-square test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Amp Peak 1(1p22.3) 0 (0%) 102 0.0018895 0.744 0.081254 1 0.021278 1 0.034694 1 0.5293 1 0.66908 1 0.53411 1 0.72699 1 Amp Peak 2(1q22) 0 (0%) 39 9.3948e-07 0.000394 7.0302e-05 0.0292 0.21452 1 0.60307 1 0.13005 1 0.059128 1 0.090763 1 0.45856 1 Amp Peak 3(1q42.3) 0 (0%) 44 0.0032369 1 0.0080138 1 0.88521 1 0.28385 1 0.73315 1 0.26963 1 0.40533 1 0.30186 1 Amp Peak 4(2p24.1) 0 (0%) 110 0.00083777 0.336 0.8135 1 0.037606 1 0.039422 1 0.31648 1 0.51111 1 0.72961 1 0.36649 1 Amp Peak 5(2q31.2) 0 (0%) 110 0.0092351 1 0.58323 1 0.39906 1 0.48025 1 0.41915 1 1 1 0.72961 1 0.7205 1 Amp Peak 6(3q26.31) 0 (0%) 113 0.00031685 0.13 0.025584 1 0.10945 1 0.078979 1 0.038526 1 0.021172 1 0.65444 1 0.02064 1 Amp Peak 7(5p15.33) 0 (0%) 71 0.0029555 1 0.24098 1 0.52492 1 0.94745 1 0.23873 1 0.09006 1 0.52004 1 0.234 1 Amp Peak 8(5q35.3) 0 (0%) 92 0.020027 1 0.65334 1 0.85856 1 0.37718 1 0.25419 1 0.47264 1 0.31429 1 0.19782 1 Amp Peak 9(6p25.2) 0 (0%) 81 0.0026173 1 0.0033548 1 0.028161 1 0.19422 1 0.94128 1 0.93592 1 0.45396 1 0.96839 1 Amp Peak 10(6p21.1) 0 (0%) 82 0.0046654 1 0.00011157 0.0461 0.0037486 1 0.97264 1 0.93001 1 0.65261 1 0.33814 1 0.82199 1 Amp Peak 11(7q21.2) 0 (0%) 89 0.18016 1 0.15302 1 0.19215 1 0.3421 1 0.15066 1 0.091425 1 0.84235 1 0.2308 1 Amp Peak 12(8q13.1) 0 (0%) 70 3.5051e-09 1.48e-06 0.57362 1 0.0032212 1 0.34728 1 0.22904 1 0.80292 1 0.38998 1 0.88227 1 Amp Peak 13(8q24.13) 0 (0%) 58 1.7494e-08 7.36e-06 0.30595 1 0.0031697 1 0.40878 1 0.33624 1 0.77308 1 0.57064 1 0.82599 1 Amp Peak 14(9q34.2) 0 (0%) 121 0.16472 1 0.048802 1 0.28543 1 0.067944 1 0.37334 1 0.19288 1 0.64023 1 0.010893 1 Amp Peak 15(10p15.1) 0 (0%) 109 0.51734 1 0.14951 1 0.29431 1 0.32857 1 0.815 1 0.83541 1 0.1617 1 0.91542 1 Amp Peak 16(11q13.3) 0 (0%) 114 0.061129 1 1 1 0.049674 1 0.62303 1 0.05757 1 0.25488 1 0.033344 1 0.39512 1 Amp Peak 17(12q23.1) 0 (0%) 113 0.023233 1 0.39108 1 0.23654 1 0.062645 1 0.83892 1 0.81925 1 0.88299 1 0.95058 1 Amp Peak 18(13q32.3) 0 (0%) 113 0.00037164 0.152 0.040533 1 0.071433 1 0.037287 1 0.18951 1 0.34638 1 0.84649 1 0.4509 1 Amp Peak 19(15q26.3) 0 (0%) 117 0.024523 1 0.81906 1 0.43309 1 0.19671 1 0.45843 1 0.43593 1 0.90841 1 0.38442 1 Amp Peak 20(17p11.2) 0 (0%) 120 0.60963 1 0.93773 1 0.1318 1 0.076844 1 0.87191 1 0.9385 1 1 1 0.93851 1 Amp Peak 21(17q23.1) 0 (0%) 82 0.0081061 1 0.19519 1 0.12863 1 0.28084 1 0.50869 1 0.63513 1 0.70677 1 0.43061 1 Amp Peak 22(17q25.3) 0 (0%) 79 0.00093383 0.373 0.039779 1 0.12976 1 0.80103 1 0.33907 1 0.4921 1 0.36382 1 0.32549 1 Amp Peak 23(19p13.12) 0 (0%) 104 0.041815 1 0.0012477 0.495 0.00086855 0.347 0.0056592 1 0.012628 1 0.086465 1 0.00015895 0.0655 0.23024 1 Amp Peak 24(19q13.11) 0 (0%) 96 0.071675 1 0.15453 1 0.015123 1 0.18288 1 0.25516 1 0.162 1 0.066606 1 0.31799 1 Amp Peak 25(20q13.33) 0 (0%) 87 0.0019568 0.767 0.046428 1 0.020167 1 0.060303 1 0.58499 1 0.90574 1 0.31891 1 0.8213 1 Del Peak 1(1p36.32) 0 (0%) 78 0.016516 1 0.010492 1 0.040972 1 0.26332 1 0.81942 1 0.77381 1 0.94848 1 0.61881 1 Del Peak 2(1p35.2) 0 (0%) 90 0.032358 1 0.0062503 1 0.059873 1 0.031871 1 0.4243 1 0.16495 1 0.64906 1 0.096857 1 Del Peak 3(2q22.1) 0 (0%) 123 0.11903 1 0.087168 1 0.04421 1 0.6432 1 0.031624 1 0.0085546 1 0.52617 1 0.018088 1 Del Peak 4(2q37.3) 0 (0%) 112 0.0033346 1 0.80418 1 0.00070758 0.285 0.25089 1 0.07036 1 0.042061 1 0.43693 1 0.11384 1 Del Peak 5(3p13) 0 (0%) 117 0.025836 1 0.12693 1 3.878e-05 0.0161 0.0011661 0.464 0.096106 1 0.32867 1 0.06395 1 0.038723 1 Del Peak 6(4p16.1) 0 (0%) 111 0.30809 1 0.029829 1 0.3156 1 0.39143 1 0.64037 1 0.58209 1 0.15722 1 0.21662 1 Del Peak 7(4q25) 0 (0%) 75 6.2521e-07 0.000263 0.0081229 1 0.0058389 1 0.14736 1 0.76749 1 0.9095 1 0.50577 1 0.82725 1 Del Peak 8(4q35.1) 0 (0%) 80 0.00048661 0.198 0.002793 1 0.0073968 1 0.26332 1 0.92264 1 0.68229 1 1 1 0.54765 1 Del Peak 9(5q23.1) 0 (0%) 120 0.28441 1 0.14933 1 0.90986 1 0.21093 1 0.33592 1 0.64282 1 0.62136 1 0.4612 1 Del Peak 10(6q16.3) 0 (0%) 91 0.0090316 1 0.52538 1 0.0023879 0.924 0.13387 1 0.13682 1 0.40974 1 0.70149 1 0.32973 1 Del Peak 11(6q26) 0 (0%) 86 0.0021118 0.824 0.16455 1 0.0089352 1 0.050351 1 0.0049583 1 0.11126 1 0.48113 1 0.064297 1 Del Peak 12(8p23.2) 0 (0%) 55 1.281e-15 5.43e-13 0.069326 1 0.58353 1 0.61737 1 0.56754 1 0.50404 1 1 1 0.45638 1 Del Peak 13(8p11.22) 0 (0%) 72 7.2675e-15 3.07e-12 0.36652 1 0.81634 1 0.50742 1 0.75365 1 0.33847 1 0.62555 1 0.16976 1 Del Peak 14(9p21.3) 0 (0%) 89 0.0065603 1 0.76638 1 0.077734 1 0.23862 1 0.67931 1 0.58066 1 1 1 0.35948 1 Del Peak 15(9q34.3) 0 (0%) 91 0.00081994 0.33 0.083901 1 0.03478 1 0.23546 1 0.94006 1 0.2967 1 0.79233 1 0.15181 1 Del Peak 16(10q23.31) 0 (0%) 92 0.0019199 0.755 0.6225 1 0.00027727 0.114 0.041937 1 0.040686 1 0.13084 1 0.054862 1 0.38067 1 Del Peak 17(11q23.3) 0 (0%) 109 0.21923 1 0.44466 1 0.1552 1 0.16512 1 0.7769 1 0.65874 1 0.017228 1 0.55026 1 Del Peak 18(12p12.1) 0 (0%) 107 0.014491 1 0.38179 1 0.0027638 1 0.32904 1 0.31183 1 0.21366 1 0.26775 1 0.32278 1 Del Peak 19(12q24.33) 0 (0%) 115 0.0049574 1 0.20432 1 0.096779 1 0.32161 1 0.89101 1 0.72363 1 0.76837 1 0.62091 1 Del Peak 20(13q14.2) 0 (0%) 76 2.0253e-06 0.000847 0.22958 1 9.1342e-05 0.0378 0.016865 1 0.0018108 0.715 0.10855 1 0.0065178 1 0.1791 1 Del Peak 21(13q22.2) 0 (0%) 88 0.0004309 0.176 0.14831 1 0.00049309 0.2 0.18816 1 0.032823 1 0.48627 1 0.059478 1 0.47528 1 Del Peak 22(14q23.3) 0 (0%) 90 0.13375 1 0.06089 1 0.0005479 0.222 0.0049526 1 0.24655 1 0.10062 1 0.19621 1 0.061525 1 Del Peak 23(16q23.1) 0 (0%) 81 0.013883 1 0.0093645 1 0.0023333 0.905 0.019815 1 0.2829 1 0.099769 1 0.74575 1 0.10504 1 Del Peak 24(17p13.3) 0 (0%) 62 3.3183e-06 0.00138 0.21571 1 0.0055257 1 0.066486 1 0.0031476 1 0.0022543 0.877 0.031339 1 0.0020257 0.792 Del Peak 25(17p11.2) 0 (0%) 62 0.0013014 0.515 0.29817 1 0.06407 1 0.025154 1 0.00062823 0.254 0.0034895 1 0.17748 1 0.0024964 0.964 Del Peak 26(18q21.2) 0 (0%) 111 0.01627 1 0.015079 1 0.077739 1 0.69451 1 0.32139 1 0.58209 1 0.64137 1 0.45888 1 Del Peak 27(19p13.3) 0 (0%) 107 0.078916 1 0.016928 1 0.0084115 1 0.41042 1 0.15712 1 0.19077 1 0.59993 1 0.10492 1 Del Peak 28(22q13.32) 0 (0%) 100 0.05491 1 0.55043 1 0.084385 1 0.62906 1 0.87929 1 0.26493 1 0.96832 1 0.76335 1