Molecular subtypes MRNA_CNMF MRNA_CHIERARCHICAL MIR_CNMF MIR_CHIERARCHICAL CN_CNMF METHLYATION_CNMF RPPA_CNMF RPPA_CHIERARCHICAL MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q 1p gain 0 (0%) 465 0.16295 1 0.31346 1 0.12039 1 0.80107 1 0.19654 1 0.84825 1 0.040032 1 0.33322 1 0.69359 1 0.34382 1 0.1246 1 0.71429 1 0.028709 1 1 1 1q gain 0 (0%) 408 0.49727 1 0.35978 1 0.61769 1 0.15824 1 7.4537e-06 0.00812 0.056973 1 0.36512 1 0.79794 1 0.63953 1 0.61931 1 0.20645 1 0.45684 1 0.1673 1 0.22807 1 2p gain 0 (0%) 440 2.5555e-09 2.83e-06 4.88e-09 5.39e-06 0.61246 1 6.2388e-07 0.000685 7.2439e-11 8.05e-08 8.046e-11 8.93e-08 0.036288 1 0.43918 1 8.6968e-05 0.0933 0.0045651 1 0.42647 1 0.20857 1 0.75166 1 0.38403 1 2q gain 0 (0%) 466 7.1581e-07 0.000785 6.2013e-06 0.00677 0.38016 1 0.00018771 0.2 3.0372e-08 3.35e-05 1.0645e-05 0.0116 0.033757 1 0.32914 1 0.0018348 1 0.0044742 1 0.53464 1 0.48051 1 0.40311 1 0.19319 1 3p gain 0 (0%) 461 0.36305 1 0.6434 1 0.15605 1 0.4635 1 0.001892 1 0.44403 1 0.20096 1 0.46426 1 0.63314 1 0.88875 1 0.7967 1 0.61775 1 0.79866 1 0.30726 1 3q gain 0 (0%) 362 0.9363 1 0.6976 1 0.61695 1 0.80255 1 5.9931e-09 6.62e-06 0.0012785 1 0.44667 1 0.24824 1 0.35198 1 0.67807 1 0.38684 1 0.44891 1 0.065221 1 0.63799 1 4p gain 0 (0%) 539 0.83802 1 0.86136 1 0.005197 1 0.39067 1 0.090389 1 0.10036 1 0.014865 1 0.45762 1 0.95282 1 0.57286 1 0.27219 1 0.28592 1 0.17867 1 0.11302 1 4q gain 0 (0%) 554 0.94809 1 0.61784 1 0.68635 1 0.9011 1 0.34989 1 0.037277 1 0.020772 1 0.25723 1 0.91311 1 0.58536 1 0.0038492 1 0.047904 1 0.0015689 1 0.062631 1 5p gain 0 (0%) 424 0.74145 1 0.90643 1 0.69425 1 0.33648 1 4.4364e-07 0.000488 0.38342 1 0.58946 1 0.15536 1 0.54422 1 0.90517 1 0.056323 1 0.24216 1 0.12783 1 0.13969 1 5q gain 0 (0%) 536 0.041666 1 0.11524 1 0.91926 1 0.26451 1 0.59757 1 0.34564 1 0.15656 1 0.58048 1 0.31644 1 0.65844 1 0.038975 1 0.42186 1 0.17712 1 0.42132 1 6p gain 0 (0%) 448 0.4527 1 0.082859 1 0.84108 1 0.10643 1 1.4405e-06 0.00158 0.0024629 1 0.54553 1 0.74449 1 0.15364 1 0.61917 1 0.29139 1 0.14736 1 0.41562 1 0.092361 1 6q gain 0 (0%) 508 0.7168 1 0.13904 1 0.6938 1 0.046864 1 1.1851e-05 0.0129 0.00011724 0.126 0.14014 1 0.85668 1 0.0031371 1 0.35442 1 0.9301 1 0.41641 1 0.92734 1 0.023701 1 7p gain 0 (0%) 443 0.20487 1 0.2047 1 0.20777 1 0.38178 1 3.5365e-08 3.9e-05 1.3189e-05 0.0143 0.48643 1 0.12635 1 0.083643 1 0.10863 1 0.89266 1 0.41235 1 0.35867 1 0.21947 1 7q gain 0 (0%) 415 0.079486 1 0.075032 1 0.59321 1 0.22351 1 4.3277e-06 0.00473 0.0022071 1 0.31587 1 0.075706 1 0.17509 1 0.17344 1 0.20851 1 0.57159 1 0.07187 1 0.56162 1 8p gain 0 (0%) 484 0.20519 1 0.086782 1 0.95415 1 0.1378 1 0.27691 1 0.71895 1 0.82971 1 0.23221 1 0.54669 1 0.2315 1 0.57854 1 0.34549 1 0.88938 1 0.29956 1 8q gain 0 (0%) 366 0.056493 1 0.15434 1 0.07284 1 0.61458 1 0.016737 1 0.9811 1 0.78613 1 0.12478 1 0.0038502 1 0.37985 1 0.81157 1 0.79525 1 0.42836 1 0.80063 1 9p gain 0 (0%) 507 0.01689 1 0.30479 1 0.31754 1 0.65886 1 0.010512 1 0.0095278 1 0.18357 1 0.68826 1 0.89614 1 0.58663 1 0.15685 1 0.74769 1 0.73414 1 0.29313 1 9q gain 0 (0%) 541 0.49878 1 0.70454 1 0.26027 1 0.23012 1 0.28281 1 0.23371 1 0.51923 1 0.20775 1 0.8134 1 0.048399 1 0.74888 1 0.87116 1 0.7686 1 0.89748 1 10p gain 0 (0%) 438 0.010889 1 0.024794 1 0.7232 1 0.046155 1 2.4144e-09 2.68e-06 0.00015892 0.17 0.2939 1 0.45435 1 0.012621 1 0.86548 1 0.50717 1 0.96254 1 0.3992 1 0.073371 1 10q gain 0 (0%) 502 0.0096869 1 0.024958 1 0.7848 1 0.031057 1 0.015188 1 0.010622 1 0.28258 1 0.51093 1 0.079979 1 0.31168 1 0.38032 1 0.56963 1 0.75309 1 0.24973 1 11p gain 0 (0%) 530 0.39257 1 0.1573 1 0.28205 1 0.27075 1 0.014158 1 0.031372 1 0.022531 1 0.0044087 1 0.042674 1 0.28394 1 0.12078 1 0.18341 1 0.30626 1 0.33039 1 11q gain 0 (0%) 508 0.61553 1 0.29927 1 0.8296 1 0.66109 1 1.943e-05 0.021 0.0015343 1 0.36933 1 0.45147 1 0.57713 1 0.22077 1 0.28109 1 0.43587 1 1 1 0.69144 1 12p gain 0 (0%) 361 2.4848e-05 0.0268 2.0093e-05 0.0217 0.40245 1 0.0012239 1 6.5748e-14 7.32e-11 3.8824e-09 4.29e-06 0.36228 1 0.82455 1 1.464e-05 0.0159 0.00033023 0.35 0.18326 1 0.19382 1 0.27925 1 0.10287 1 12q gain 0 (0%) 447 0.00024669 0.262 7.9156e-06 0.00862 0.82461 1 0.0007671 0.807 6.4303e-15 7.17e-12 2.8416e-06 0.00311 0.0093259 1 0.6627 1 0.00073145 0.77 0.002353 1 0.1021 1 0.11896 1 0.19629 1 0.12183 1 13q gain 0 (0%) 529 0.062735 1 0.02586 1 0.93152 1 0.0064488 1 0.00061604 0.65 0.00059707 0.631 0.70083 1 0.36058 1 0.4509 1 0.94867 1 0.19421 1 0.53622 1 0.67646 1 0.36802 1 14q gain 0 (0%) 536 0.011868 1 0.040314 1 0.61931 1 0.0055041 1 0.95043 1 0.14499 1 0.064406 1 0.0097759 1 0.27288 1 0.036228 1 0.46011 1 0.64157 1 0.46283 1 0.64348 1 15q gain 0 (0%) 545 0.31905 1 0.15109 1 0.36864 1 0.6275 1 0.27799 1 0.59736 1 0.16581 1 0.82401 1 1 1 1 1 0.63843 1 0.54036 1 0.76903 1 0.33213 1 16p gain 0 (0%) 540 0.063297 1 0.05648 1 0.97063 1 0.40187 1 0.16713 1 0.15156 1 0.67479 1 0.10145 1 1 1 1 1 1 1 0.71958 1 0.87815 1 0.58105 1 16q gain 0 (0%) 554 0.013328 1 0.22504 1 0.28641 1 0.093781 1 0.90254 1 0.060998 1 0.51217 1 0.12387 1 NA NA NA NA 0.11882 1 0.26851 1 0.11931 1 0.075919 1 17p gain 0 (0%) 558 0.26395 1 0.20149 1 0.22068 1 0.64514 1 0.043068 1 0.40709 1 0.4141 1 0.79496 1 0.35173 1 0.63157 1 0.58019 1 0.36479 1 0.34311 1 0.10987 1 17q gain 0 (0%) 546 0.8931 1 0.70828 1 0.13628 1 0.22093 1 0.051624 1 0.30586 1 0.50852 1 0.92151 1 0.59097 1 0.68348 1 0.69524 1 0.46579 1 0.82955 1 0.23536 1 18p gain 0 (0%) 496 0.028811 1 0.011704 1 0.8971 1 0.12043 1 0.0070689 1 0.00021703 0.231 0.0028287 1 0.073145 1 0.52655 1 0.61144 1 0.27146 1 0.58921 1 0.25976 1 0.40592 1 18q gain 0 (0%) 529 0.43894 1 0.42572 1 0.67846 1 0.4181 1 0.089201 1 0.044395 1 0.20572 1 0.45416 1 0.61417 1 0.43977 1 0.13648 1 0.79183 1 0.13654 1 0.59725 1 19p gain 0 (0%) 471 0.017636 1 0.05617 1 0.80845 1 0.37108 1 7.7138e-08 8.49e-05 0.0013615 1 0.015067 1 0.23515 1 0.74126 1 0.82177 1 0.67697 1 0.3114 1 0.57276 1 0.92996 1 19q gain 0 (0%) 479 0.009812 1 0.11697 1 0.76754 1 0.10065 1 1.2448e-06 0.00136 0.0014726 1 0.01518 1 0.19679 1 0.5578 1 0.52494 1 0.23497 1 0.1871 1 0.22069 1 0.50199 1 20p gain 0 (0%) 335 0.0021951 1 0.0013348 1 0.11449 1 0.0029102 1 2.0478e-15 2.29e-12 2.7622e-11 3.07e-08 0.32174 1 0.57179 1 0.0037546 1 0.14405 1 0.56911 1 1 1 0.96056 1 0.33345 1 20q gain 0 (0%) 296 1.3237e-05 0.0143 9.7222e-06 0.0106 0.47743 1 0.0042259 1 1.5728e-20 1.76e-17 3.0444e-15 3.4e-12 0.45641 1 0.17546 1 0.0032992 1 0.3947 1 0.35065 1 0.87726 1 0.82837 1 0.21176 1 21q gain 0 (0%) 500 0.37437 1 0.23137 1 0.50017 1 0.64584 1 2.2035e-05 0.0238 0.0002892 0.307 0.2896 1 0.25904 1 0.37056 1 0.17061 1 0.23062 1 0.68336 1 0.34508 1 0.51197 1 22q gain 0 (0%) 561 0.38226 1 0.097852 1 0.52669 1 0.40039 1 0.20487 1 0.91807 1 0.60354 1 0.70144 1 0.83266 1 1 1 0.043254 1 0.47395 1 0.08317 1 0.50617 1 Xq gain 0 (0%) 535 0.13312 1 0.1901 1 0.94986 1 0.18979 1 0.008985 1 0.049463 1 0.090381 1 0.32809 1 0.39338 1 0.4998 1 0.20333 1 0.76711 1 0.0020288 1 0.60555 1 1p loss 0 (0%) 535 0.0045186 1 0.041009 1 0.16446 1 0.40073 1 0.95139 1 0.20882 1 0.50324 1 0.51377 1 0.73621 1 0.36082 1 1 1 1 1 0.12895 1 0.81828 1 1q loss 0 (0%) 548 0.018268 1 0.022636 1 0.0094354 1 0.10597 1 0.22679 1 0.55935 1 0.64762 1 0.18907 1 0.79644 1 0.096428 1 0.3288 1 0.84338 1 0.44874 1 0.62874 1 2p loss 0 (0%) 544 0.667 1 0.51878 1 0.93469 1 0.039803 1 0.35745 1 0.93664 1 0.33212 1 0.58514 1 0.17823 1 0.29035 1 0.83336 1 0.22889 1 0.48488 1 0.89748 1 2q loss 0 (0%) 540 0.76533 1 0.5832 1 0.94285 1 0.041241 1 0.51521 1 0.37214 1 0.28727 1 0.66814 1 0.54632 1 0.24334 1 0.67592 1 0.10933 1 0.59775 1 0.49695 1 3p loss 0 (0%) 509 0.075042 1 0.0554 1 0.89502 1 0.61786 1 0.0017768 1 0.053776 1 0.86993 1 0.24993 1 0.018136 1 0.45827 1 0.19387 1 0.534 1 0.82981 1 0.064071 1 3q loss 0 (0%) 547 0.26742 1 0.10727 1 1 1 0.47634 1 0.093053 1 0.27878 1 0.59221 1 0.60643 1 0.080309 1 0.27615 1 0.48902 1 0.68426 1 1 1 0.38241 1 4p loss 0 (0%) 306 0.18946 1 0.60029 1 0.47262 1 0.78491 1 0.010746 1 0.9319 1 0.14517 1 0.24288 1 0.15212 1 0.29226 1 0.048624 1 0.013504 1 0.021138 1 0.014597 1 4q loss 0 (0%) 267 0.079357 1 0.37012 1 0.40352 1 0.2291 1 0.0022533 1 0.75438 1 0.28585 1 0.092452 1 0.46976 1 0.03565 1 0.047057 1 0.00025273 0.268 0.0055179 1 0.0034616 1 5p loss 0 (0%) 483 0.3454 1 0.24885 1 0.35206 1 0.24827 1 0.012062 1 0.012285 1 0.16117 1 0.099488 1 0.00040668 0.43 0.56173 1 0.89396 1 0.55759 1 0.82695 1 0.081118 1 5q loss 0 (0%) 397 0.00010825 0.116 0.0020219 1 0.6245 1 0.0053177 1 4.3859e-05 0.0472 1.4084e-07 0.000155 0.0059933 1 0.041041 1 0.00066396 0.7 0.28447 1 0.5071 1 0.52475 1 0.22466 1 0.24037 1 6p loss 0 (0%) 444 0.99115 1 0.25664 1 0.64005 1 0.59804 1 0.23324 1 0.19429 1 0.21208 1 0.40748 1 0.47979 1 0.79656 1 0.18022 1 1 1 0.033088 1 0.81149 1 6q loss 0 (0%) 372 0.96031 1 0.38136 1 0.92829 1 0.38502 1 0.10793 1 0.11882 1 0.098587 1 0.65295 1 0.12425 1 0.19354 1 0.21101 1 0.8119 1 0.075684 1 0.70669 1 7p loss 0 (0%) 479 0.91396 1 0.25943 1 0.36066 1 0.3532 1 0.081601 1 0.1054 1 0.38224 1 0.76663 1 0.94356 1 0.034714 1 0.025898 1 0.71828 1 0.25918 1 0.45813 1 7q loss 0 (0%) 522 0.77802 1 0.41354 1 0.48805 1 0.61105 1 0.2722 1 0.028825 1 0.34938 1 0.7556 1 0.57884 1 0.21966 1 0.053667 1 0.83667 1 0.1154 1 1 1 8p loss 0 (0%) 334 0.71535 1 0.66857 1 0.96267 1 0.52094 1 0.0041017 1 0.12232 1 0.19909 1 0.3505 1 0.34002 1 0.91397 1 0.47139 1 0.19113 1 0.96794 1 0.26257 1 8q loss 0 (0%) 506 0.046512 1 0.47271 1 0.2888 1 0.13424 1 0.0069716 1 0.11346 1 0.076626 1 0.48452 1 0.039285 1 0.04403 1 0.78856 1 0.38041 1 0.86555 1 0.59924 1 9p loss 0 (0%) 358 0.0031456 1 0.0016534 1 0.7386 1 0.0096541 1 0.015654 1 0.00021793 0.232 0.67382 1 0.97575 1 0.56685 1 0.13376 1 0.040209 1 0.3305 1 0.049363 1 0.4254 1 9q loss 0 (0%) 329 0.0021506 1 0.0054764 1 0.18544 1 0.0033922 1 3.3012e-12 3.67e-09 0.0026684 1 0.653 1 0.88138 1 0.0027623 1 0.21167 1 0.10882 1 0.030881 1 0.10023 1 0.0091853 1 10p loss 0 (0%) 503 0.41257 1 0.69552 1 0.26881 1 0.75679 1 0.77827 1 0.88181 1 0.19336 1 0.20523 1 0.96423 1 0.6594 1 0.1094 1 0.61294 1 0.078275 1 0.43194 1 10q loss 0 (0%) 479 0.53781 1 0.11249 1 0.086681 1 0.92425 1 0.24694 1 0.43818 1 0.25929 1 0.22741 1 0.76289 1 0.26 1 0.24825 1 0.22232 1 0.5433 1 0.73297 1 11p loss 0 (0%) 424 0.020289 1 0.0075158 1 0.082582 1 0.2629 1 0.063289 1 0.0017506 1 0.55809 1 0.13329 1 0.021253 1 0.68689 1 0.78732 1 0.80869 1 0.069176 1 0.40199 1 11q loss 0 (0%) 463 0.1695 1 0.16784 1 0.0055369 1 0.075065 1 0.093993 1 0.025111 1 0.84513 1 0.099516 1 0.073346 1 0.79656 1 0.28232 1 0.15618 1 0.041947 1 0.033913 1 12p loss 0 (0%) 519 0.46452 1 0.21889 1 0.96366 1 0.83399 1 0.007762 1 0.24725 1 0.97102 1 0.059675 1 0.29621 1 0.43977 1 0.59089 1 0.27694 1 0.35416 1 0.60175 1 12q loss 0 (0%) 494 0.094007 1 0.017363 1 0.79814 1 0.55752 1 0.0027883 1 0.14583 1 0.83859 1 0.26609 1 0.14854 1 0.016182 1 0.42131 1 0.33484 1 0.36452 1 0.57876 1 13q loss 0 (0%) 307 0.064881 1 0.044805 1 0.64851 1 0.52005 1 0.0011933 1 3.2247e-06 0.00352 0.002101 1 0.0034058 1 0.29707 1 0.98503 1 0.3876 1 0.89693 1 0.25602 1 0.8299 1 14q loss 0 (0%) 406 0.084111 1 0.067545 1 0.87395 1 0.69812 1 8.0989e-05 0.087 0.0080694 1 0.96636 1 0.47856 1 0.045438 1 0.55716 1 0.4301 1 0.35573 1 0.68875 1 0.56175 1 15q loss 0 (0%) 350 0.0014649 1 0.012076 1 0.00094218 0.99 0.00037687 0.399 1.1077e-10 1.23e-07 2.4741e-05 0.0267 0.88355 1 0.88461 1 0.024465 1 0.44881 1 0.0050396 1 0.38675 1 0.035024 1 0.0034348 1 16p loss 0 (0%) 299 0.94052 1 0.83526 1 0.35476 1 0.97615 1 0.050784 1 0.082446 1 0.88807 1 0.9312 1 0.36683 1 0.7197 1 0.22788 1 0.59109 1 0.47744 1 0.23932 1 16q loss 0 (0%) 208 0.98046 1 0.56817 1 0.17433 1 0.40817 1 0.015931 1 0.12071 1 0.73291 1 0.97296 1 0.49213 1 0.81181 1 0.31844 1 0.11701 1 0.14156 1 0.19512 1 17p loss 0 (0%) 141 0.17065 1 0.0040477 1 0.69945 1 0.38882 1 0.27052 1 0.031125 1 0.52534 1 0.17806 1 0.29504 1 0.11924 1 0.33909 1 0.41755 1 0.16221 1 0.71222 1 17q loss 0 (0%) 238 0.011428 1 0.00020664 0.22 0.0047145 1 0.47029 1 0.69833 1 0.25844 1 0.18766 1 0.12744 1 0.12763 1 0.10867 1 0.0073363 1 0.28762 1 4.778e-05 0.0514 0.25872 1 18p loss 0 (0%) 383 0.58135 1 0.91257 1 0.24458 1 0.68759 1 0.18645 1 0.024312 1 0.94108 1 0.23955 1 0.01799 1 0.20641 1 0.88053 1 0.91722 1 0.69555 1 0.56509 1 18q loss 0 (0%) 334 0.068751 1 0.26022 1 0.52367 1 0.47167 1 0.75886 1 0.51218 1 0.96308 1 0.13963 1 0.0028468 1 0.10282 1 0.66878 1 0.46685 1 0.57291 1 0.16766 1 19p loss 0 (0%) 423 0.78716 1 0.17273 1 0.20278 1 0.13096 1 0.11204 1 0.075585 1 0.017679 1 0.11951 1 0.4664 1 0.71031 1 0.97156 1 0.75505 1 0.92253 1 1 1 19q loss 0 (0%) 424 0.33041 1 0.11888 1 0.21474 1 0.38854 1 0.15932 1 0.62552 1 0.045368 1 0.39269 1 1 1 0.87081 1 0.20647 1 0.35797 1 0.35169 1 0.3558 1 20p loss 0 (0%) 532 0.3219 1 0.54241 1 0.41413 1 0.34484 1 0.15694 1 0.46311 1 0.65678 1 0.44681 1 0.020756 1 0.075894 1 0.011573 1 0.89061 1 0.038692 1 0.76457 1 20q loss 0 (0%) 548 0.68932 1 0.95926 1 0.16012 1 0.8858 1 0.48026 1 0.89114 1 0.35183 1 0.26939 1 0.2454 1 0.6249 1 0.24834 1 1 1 0.32958 1 0.73682 1 21q loss 0 (0%) 418 0.2571 1 0.15671 1 0.24794 1 0.034588 1 0.60712 1 0.01346 1 0.28555 1 0.38666 1 0.46045 1 0.56346 1 0.4644 1 0.96584 1 0.029784 1 0.67219 1 22q loss 0 (0%) 182 4.3804e-05 0.0472 0.00023726 0.252 0.11547 1 0.00040443 0.428 0.00015563 0.167 0.0016562 1 0.039487 1 0.10113 1 0.080624 1 0.19052 1 0.0027861 1 0.38953 1 0.0032458 1 0.31751 1 Xq loss 0 (0%) 469 0.086219 1 0.33563 1 0.014696 1 0.026965 1 0.16824 1 0.13846 1 1 1 0.46578 1 0.29467 1 0.82155 1 0.97526 1 0.38371 1 0.57024 1 0.48309 1