Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1q gain	0 (0%)	61	0.13955	1	0.018872	1	0.25992	1	0.12217	1	0.28853	1	0.2886	1	0.20583	1	0.30062	1
3q gain	0 (0%)	62	0.10574	1	0.33756	1	0.25992	1	0.12217	1	0.28853	1	0.2886	1	0.20583	1	0.30062	1
7p gain	0 (0%)	61	0.23952	1	0.16726	1	0.88473	1	0.68302	1	0.39405	1	0.66081	1	0.50939	1	0.53089	1
8p gain	0 (0%)	62	0.060715	1	0.0595	1	0.25992	1	0.12217	1	0.28853	1	0.2886	1	0.20583	1	0.30062	1
8q gain	0 (0%)	56	0.0020309	0.351	0.0088343	1	0.024388	1	0.018512	1	0.043589	1	0.0098869	1	0.018102	1	0.0073896	1
18p gain	0 (0%)	60	0.11045	1	0.16726	1	0.25992	1	0.12217	1	0.23165	1	0.12603	1	0.091593	1	0.13348	1
19q gain	0 (0%)	62	0.10574	1	0.0595	1	0.25992	1	0.12217	1	0.28853	1	0.2886	1	0.20583	1	0.30062	1
20q gain	0 (0%)	58	1.6742e-05	0.00315	0.40443	1	0.31426	1	0.19458	1	0.11083	1	0.13836	1	0.03834	1	0.092034	1
5q loss	0 (0%)	62	0.10574	1	0.33756	1	NA	NA	NA	NA	0.28853	1	0.2886	1	0.20583	1	0.30062	1
6p loss	0 (0%)	59	0.026666	1	0.0038246	0.639	0.019137	1	0.0092025	1	0.037508	1	0.033077	1	0.013026	1	0.018464	1
6q loss	0 (0%)	55	0.019252	1	3.9057e-05	0.00726	0.019015	1	0.00078621	0.14	0.0089002	1	0.0059555	0.965	0.0014819	0.258	0.0023553	0.403
8p loss	0 (0%)	62	0.4104	1	0.33756	1	NA	NA	NA	NA	0.28853	1	0.2886	1	0.20583	1	0.30062	1
9p loss	0 (0%)	53	0.00060074	0.108	0.00022322	0.0406	0.003279	0.554	0.0027224	0.463	0.01125	1	0.008955	1	0.0022672	0.39	0.0088994	1
9q loss	0 (0%)	61	0.24753	1	0.16726	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
10p loss	0 (0%)	61	0.045228	1	0.018872	1	0.25992	1	0.12217	1	0.23165	1	0.12603	1	0.091593	1	0.13348	1
10q loss	0 (0%)	61	0.0055398	0.903	0.018872	1	0.25992	1	0.12217	1	0.23165	1	0.12603	1	0.091593	1	0.13348	1
12q loss	0 (0%)	61	0.045228	1	0.018872	1	0.88473	1	0.68302	1	0.57707	1	1	1	0.38505	1	1	1
13q loss	0 (0%)	62	0.0038707	0.643	0.33756	1	NA	NA	NA	NA	0.28853	1	0.2886	1	0.20583	1	0.30062	1
15q loss	0 (0%)	61	0.20812	1	0.018872	1	0.32121	1	0.058847	1	0.23165	1	0.12603	1	0.091593	1	0.13348	1
17p loss	0 (0%)	51	4.3752e-05	0.00809	0.00012761	0.0234	0.14452	1	0.0094249	1	0.019447	1	0.0054147	0.888	0.00045366	0.0817	0.004017	0.663
17q loss	0 (0%)	60	2.4047e-05	0.0045	0.014741	1	0.57736	1	0.53266	1	0.31765	1	0.40659	1	0.13765	1	0.27103	1
18p loss	0 (0%)	59	0.31933	1	0.025177	1	0.66678	1	0.25655	1	0.57097	1	0.40659	1	0.13765	1	0.27103	1
18q loss	0 (0%)	52	0.0037786	0.635	7.6691e-05	0.0141	0.070278	1	0.01473	1	0.042065	1	0.014878	1	0.0011845	0.207	0.010745	1
21q loss	0 (0%)	56	0.00037494	0.0679	0.0011765	0.207	0.019015	1	0.00078621	0.14	0.0089002	1	0.061447	1	0.01384	1	0.041297	1
22q loss	0 (0%)	61	0.01867	1	0.16726	1	0.25992	1	0.12217	1	0.28853	1	0.2886	1	0.20583	1	0.30062	1