		Molecular subtypes	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1q21.3)	0 (0%)	180	1.8682e-05	0.00792	0.0018409	0.7	0.0006524	0.259	0.0083799	1	0.0045759	1	0.00021635	0.0881	0.10209	1	0.052973	1	0.0054125	1	0.93755	1
Amp Peak  2(3q26.2)	0 (0%)	166	0.00019459	0.0794	0.074422	1	0.046796	1	0.15799	1	0.16899	1	0.14659	1	0.29023	1	0.047729	1	0.0064371	1	0.2705	1
Amp Peak  3(7p15.3)	0 (0%)	159	3.3486e-09	1.5e-06	0.0013987	0.539	0.2451	1	0.27368	1	0.0015993	0.611	0.03091	1	0.24635	1	0.0072411	1	0.030899	1	0.39274	1
Amp Peak  4(7q34)	0 (0%)	162	8.5886e-08	3.8e-05	4.9778e-05	0.0209	0.65549	1	0.63619	1	0.00037652	0.151	0.0078299	1	0.083579	1	0.0036866	1	0.019702	1	0.38503	1
Amp Peak  5(8p11.22)	0 (0%)	177	7.3903e-08	3.27e-05	0.067367	1	0.19091	1	0.18561	1	0.01949	1	0.031657	1	0.21997	1	0.074917	1	0.015191	1	0.53336	1
Amp Peak  6(8q24.21)	0 (0%)	145	5.3394e-12	2.42e-09	0.043786	1	0.017716	1	0.013971	1	0.0024254	0.907	0.0013188	0.509	0.074428	1	0.019325	1	0.0026537	0.987	0.58912	1
Amp Peak  7(9q34.3)	0 (0%)	177	7.368e-06	0.00316	0.17149	1	0.086579	1	0.063935	1	0.53456	1	0.16614	1	0.18307	1	0.030319	1	0.1324	1	0.63372	1
Amp Peak  8(11q13.2)	0 (0%)	185	0.00053243	0.214	0.13437	1	0.47631	1	0.35046	1	0.050001	1	0.22171	1	0.99902	1	0.25901	1	0.50403	1	0.63051	1
Amp Peak  9(12q24.32)	0 (0%)	190	0.010905	1	0.23343	1	0.23092	1	0.22914	1	1	1	0.10818	1	0.49802	1	0.53373	1	0.21595	1	0.11564	1
Amp Peak 10(14q21.1)	0 (0%)	185	0.001121	0.437	0.015246	1	0.13861	1	0.1038	1	0.00072313	0.286	0.19019	1	0.13878	1	0.0041591	1	0.1655	1	0.64014	1
Amp Peak 11(20q13.33)	0 (0%)	184	0.013024	1	0.00061221	0.244	0.5612	1	0.65249	1	0.026296	1	0.010199	1	0.99225	1	0.097697	1	0.65648	1	0.85599	1
Amp Peak 12(Xp22.11)	0 (0%)	190	0.078697	1	1	1	NA	NA	NA	NA	0.40032	1	0.79579	1	0.15885	1	0.023384	1	0.044105	1	0.032809	1
Amp Peak 13(Xp22.11)	0 (0%)	190	0.078697	1	0.89072	1	0.12557	1	0.32249	1	0.51089	1	0.79579	1	0.037449	1	0.19274	1	0.23512	1	0.35111	1
Amp Peak 14(Xp21.1)	0 (0%)	191	0.1857	1	0.18786	1	0.63603	1	0.62794	1	0.87365	1	0.76631	1	0.17789	1	0.25424	1	0.11697	1	0.14685	1
Amp Peak 15(Xq12)	0 (0%)	193	0.1866	1	0.10489	1	0.5615	1	0.46047	1	0.035318	1	0.17804	1	0.53217	1	0.30672	1	0.0070897	1	0.78918	1
Amp Peak 16(Xq21.1)	0 (0%)	190	0.03796	1	0.13772	1	0.48819	1	0.49702	1	0.18071	1	0.38098	1	0.08216	1	0.72715	1	0.28802	1	0.24839	1
Amp Peak 17(Xq21.1)	0 (0%)	192	0.17082	1	0.0017823	0.679	0.45242	1	1	1	0.62387	1	0.63003	1	0.8148	1	0.84683	1	0.7692	1	1	1
Amp Peak 18(Xq21.31)	0 (0%)	192	0.059844	1	0.85996	1	0.63603	1	0.62794	1	0.37605	1	0.11846	1	0.54839	1	0.72772	1	0.55349	1	0.69255	1
Amp Peak 19(Xq25)	0 (0%)	193	0.1866	1	0.25417	1	0.63102	1	1	1	0.46496	1	1	1	0.15075	1	0.15154	1	0.28494	1	0.18992	1
Amp Peak 20(Xq25)	0 (0%)	191	0.42045	1	0.58588	1	0.87994	1	0.77025	1	0.16914	1	0.66139	1	0.79426	1	0.43632	1	0.42318	1	0.50568	1
Amp Peak 21(Xq27.1)	0 (0%)	188	0.64245	1	0.29166	1	0.42493	1	0.34744	1	0.91161	1	0.91023	1	0.017814	1	0.028011	1	0.036692	1	0.0068032	1
Del Peak  1(1p31.3)	0 (0%)	172	0.068798	1	0.00015602	0.0643	0.55819	1	0.82313	1	0.0019609	0.741	7.2351e-05	0.0302	0.070666	1	0.14156	1	0.081886	1	0.36716	1
Del Peak  2(1q42.13)	0 (0%)	179	0.42116	1	0.0028487	1	0.8752	1	0.12138	1	0.71098	1	0.70567	1	0.063199	1	0.47122	1	0.38987	1	0.25646	1
Del Peak  3(2q22.1)	0 (0%)	173	5.2238e-06	0.00226	0.00028923	0.117	0.0029311	1	0.0094638	1	0.053306	1	0.0070452	1	0.14198	1	0.00019271	0.0788	0.0069734	1	0.0048677	1
Del Peak  4(3p13)	0 (0%)	168	0.35882	1	0.016231	1	0.68484	1	0.96034	1	0.10477	1	0.10683	1	0.26418	1	0.88327	1	0.12398	1	0.024356	1
Del Peak  5(3q29)	0 (0%)	183	0.86059	1	0.039815	1	0.84636	1	0.6005	1	0.036052	1	0.31467	1	0.04624	1	0.44525	1	0.12909	1	0.50534	1
Del Peak  6(4q28.2)	0 (0%)	178	4.4608e-06	0.00193	3.258e-05	0.0137	0.072494	1	0.064508	1	0.0074466	1	0.047879	1	0.093337	1	0.060036	1	0.0019216	0.728	0.24318	1
Del Peak  7(5q11.2)	0 (0%)	164	0.00060588	0.242	0.0001209	0.0499	0.0025612	0.955	0.014426	1	0.028903	1	0.0027187	1	0.078932	1	0.021311	1	0.30881	1	0.71671	1
Del Peak  8(5q21.1)	0 (0%)	162	1.0814e-11	4.89e-09	5.8096e-09	2.59e-06	0.10029	1	0.12307	1	0.0034573	1	0.008887	1	0.029318	1	0.13641	1	0.27425	1	0.52707	1
Del Peak  9(6q15)	0 (0%)	134	7.9239e-13	3.61e-10	3.4341e-12	1.56e-09	0.00018893	0.0775	0.015507	1	1.1052e-06	0.000485	7.9861e-07	0.000352	0.00066085	0.262	0.0012299	0.477	0.0014573	0.56	0.50398	1
Del Peak 10(7q36.1)	0 (0%)	187	0.43405	1	0.7814	1	0.076116	1	0.19168	1	0.77904	1	0.70752	1	0.73069	1	0.37067	1	0.94499	1	0.9001	1
Del Peak 11(8p21.3)	0 (0%)	85	2.8365e-06	0.00124	5.3109e-08	2.36e-05	0.0036437	1	0.01405	1	1.7901e-05	0.00761	5.6464e-06	0.00243	3.7913e-06	0.00165	0.024567	1	2.6654e-06	0.00116	0.0010625	0.416
Del Peak 12(8p11.21)	0 (0%)	135	0.00031817	0.129	2.7101e-05	0.0114	0.81971	1	0.70892	1	0.00035916	0.145	0.0067768	1	0.0011857	0.461	0.56765	1	0.00089287	0.351	0.051784	1
Del Peak 13(9p22.3)	0 (0%)	181	9.6001e-05	0.0398	0.41174	1	0.0050927	1	0.0062175	1	0.13095	1	0.021034	1	0.711	1	0.61504	1	0.72643	1	0.75628	1
Del Peak 14(10q23.31)	0 (0%)	128	3.8767e-06	0.00168	1.0255e-06	0.000451	0.097128	1	0.22233	1	1.6805e-10	7.55e-08	6.2834e-06	0.0027	0.14319	1	0.092212	1	0.0033865	1	0.19347	1
Del Peak 15(11q23.2)	0 (0%)	173	0.15363	1	0.087093	1	0.19778	1	0.1367	1	0.48237	1	0.53282	1	0.4225	1	0.34326	1	0.12291	1	1	1
Del Peak 16(12p13.2)	0 (0%)	156	0.00072451	0.286	0.0029918	1	0.07012	1	0.46202	1	0.27389	1	0.056922	1	0.023021	1	0.35693	1	0.050682	1	0.24093	1
Del Peak 17(13q14.13)	0 (0%)	108	0.00010699	0.0443	1.23e-05	0.00525	0.097539	1	0.13252	1	6.5541e-05	0.0274	4.4278e-05	0.0186	0.12189	1	0.15621	1	0.28042	1	0.35678	1
Del Peak 18(16q22.3)	0 (0%)	133	4.3361e-12	1.97e-09	0.0029954	1	0.72836	1	0.28517	1	0.0020337	0.767	7.6673e-05	0.0319	0.094218	1	0.0049245	1	0.015223	1	0.38247	1
Del Peak 19(16q24.1)	0 (0%)	119	8.3053e-16	3.8e-13	0.0012429	0.481	0.85539	1	0.65756	1	0.0095715	1	0.004285	1	0.10692	1	0.0099605	1	0.011251	1	0.36626	1
Del Peak 20(17p13.1)	0 (0%)	143	5.834e-11	2.63e-08	0.040838	1	0.013861	1	0.016417	1	0.0021841	0.821	2.2477e-05	0.00951	0.042697	1	0.0010851	0.424	0.00037048	0.149	0.87956	1
Del Peak 21(17q21.31)	0 (0%)	158	0.00017064	0.0701	2.1929e-06	0.000961	0.51362	1	0.8767	1	1.4172e-05	0.00604	0.0015914	0.61	0.029027	1	0.21684	1	0.035411	1	0.69897	1
Del Peak 22(18q23)	0 (0%)	142	6.803e-08	3.02e-05	0.57083	1	0.97374	1	0.69001	1	0.14297	1	0.14173	1	0.67277	1	0.95779	1	0.58181	1	0.63237	1
Del Peak 23(19q13.2)	0 (0%)	180	0.030546	1	0.051293	1	0.34891	1	0.39156	1	0.065832	1	0.13282	1	0.10293	1	0.019552	1	0.015239	1	0.16551	1
Del Peak 24(21q22.2)	0 (0%)	179	0.066172	1	0.31786	1	0.50769	1	0.89471	1	0.053245	1	0.0022574	0.847	0.78415	1	0.35081	1	0.74916	1	0.88088	1
Del Peak 25(21q22.3)	0 (0%)	133	1.1144e-05	0.00477	1.2007e-11	5.42e-09	0.10495	1	0.2064	1	3.791e-14	1.73e-11	2.886e-10	1.29e-07	0.30662	1	0.00058131	0.233	0.046927	1	0.051608	1
