Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	0 (0%)	69	0.0099108	1	0.094198	1	0.39359	1	0.37993	1	0.34199	1	0.69038	1	0.51045	1	0.47772	1
1q gain	0 (0%)	71	0.10291	1	0.26068	1	0.56086	1	0.17154	1	0.071213	1	0.13303	1	0.15168	1	0.063912	1
2p gain	0 (0%)	78	0.75433	1	0.073153	1	0.022058	1	0.65454	1	0.42177	1	0.44163	1	0.37153	1	0.39834	1
2q gain	0 (0%)	80	0.55007	1	0.060132	1	NA	NA	NA	NA	0.22171	1	0.29936	1	0.28374	1	0.26852	1
3p gain	0 (0%)	79	0.4402	1	0.25983	1	0.67378	1	0.33978	1	0.11673	1	0.09531	1	0.16096	1	0.10103	1
3q gain	0 (0%)	79	0.4402	1	0.25983	1	0.67378	1	0.33978	1	0.11673	1	0.09531	1	0.16096	1	0.10103	1
4p gain	0 (0%)	75	0.66512	1	0.52431	1	0.43341	1	0.495	1	0.83662	1	0.18391	1	0.42495	1	0.53259	1
4q gain	0 (0%)	79	0.36538	1	0.54158	1	0.87989	1	0.58544	1	0.74298	1	0.13351	1	1	1	1	1
5p gain	0 (0%)	64	0.063208	1	0.52114	1	0.37298	1	0.12806	1	0.27036	1	0.87899	1	0.094886	1	0.32003	1
5q gain	0 (0%)	69	0.13908	1	0.082592	1	0.29582	1	0.087263	1	0.11664	1	0.69578	1	0.18404	1	0.12422	1
6p gain	0 (0%)	72	0.33446	1	0.012892	1	0.18536	1	0.019707	1	0.0029864	1	0.099002	1	0.0052699	1	0.083428	1
6q gain	0 (0%)	71	0.27592	1	0.066969	1	0.38433	1	0.22105	1	0.024945	1	0.067817	1	0.022324	1	0.038704	1
7p gain	0 (0%)	68	0.0018515	1	0.28477	1	0.58468	1	1	1	0.20699	1	0.47693	1	0.85318	1	0.64256	1
7q gain	0 (0%)	70	0.015911	1	0.1526	1	0.64141	1	0.43683	1	0.51112	1	0.21195	1	0.7833	1	1	1
8p gain	0 (0%)	68	0.5251	1	0.20385	1	0.57096	1	0.24803	1	0.24236	1	0.71869	1	0.80063	1	0.17296	1
8q gain	0 (0%)	66	0.4194	1	0.0098734	1	0.095113	1	0.23237	1	0.58999	1	0.8609	1	0.87	1	0.19176	1
9p gain	0 (0%)	76	0.015778	1	0.88845	1	0.57908	1	1	1	0.32288	1	0.53338	1	0.58775	1	0.48057	1
9q gain	0 (0%)	73	0.12356	1	0.48569	1	0.83813	1	0.75884	1	0.69626	1	0.48154	1	0.73342	1	0.39571	1
11p gain	0 (0%)	80	0.43266	1	0.29915	1	0.76043	1	1	1	0.0022584	1	0.16	1	0.032294	1	0.14815	1
11q gain	0 (0%)	80	0.28557	1	0.77079	1	0.77493	1	0.58544	1	0.085908	1	0.16	1	0.20312	1	0.14815	1
12p gain	0 (0%)	73	0.05206	1	0.91431	1	0.12514	1	0.75884	1	0.0035151	1	0.61565	1	0.10417	1	0.57741	1
12q gain	0 (0%)	78	1	1	0.073153	1	0.36208	1	1	1	0.048897	1	1	1	0.80982	1	1	1
14q gain	0 (0%)	79	0.77948	1	0.83382	1	NA	NA	NA	NA	0.74298	1	0.65616	1	0.51402	1	0.63432	1
15q gain	0 (0%)	70	0.68604	1	0.69859	1	0.27121	1	0.08185	1	0.37564	1	0.36002	1	0.36708	1	0.33909	1
16p gain	0 (0%)	75	1	1	0.42269	1	0.66197	1	0.495	1	0.38787	1	0.56147	1	0.88278	1	0.53259	1
16q gain	0 (0%)	80	0.33082	1	1	1	NA	NA	NA	NA	0.6503	1	0.62273	1	0.55061	1	0.62963	1
17p gain	0 (0%)	73	0.39581	1	0.0029416	1	0.056724	1	0.22105	1	0.28117	1	0.079127	1	0.22811	1	0.39571	1
17q gain	0 (0%)	75	0.95771	1	0.20154	1	0.45271	1	0.72052	1	0.83662	1	0.13817	1	1	1	0.74033	1
18p gain	0 (0%)	71	0.0061608	1	0.073503	1	0.65329	1	0.14481	1	0.92798	1	0.1956	1	0.84072	1	0.2033	1
18q gain	0 (0%)	73	0.0036887	1	0.76516	1	0.59267	1	0.76859	1	1	1	0.3645	1	0.44103	1	1	1
19p gain	0 (0%)	67	0.032598	1	0.12107	1	0.1659	1	1	1	0.11857	1	0.17895	1	0.39324	1	0.41707	1
19q gain	0 (0%)	72	0.28622	1	0.077572	1	0.438	1	0.3737	1	0.073835	1	1	1	0.080898	1	1	1
20p gain	0 (0%)	64	0.068996	1	0.016186	1	0.71072	1	0.16661	1	1	1	1	1	1	1	0.30923	1
20q gain	0 (0%)	61	0.19234	1	0.011622	1	0.68666	1	0.15104	1	0.43163	1	0.79812	1	0.15475	1	0.22295	1
21q gain	0 (0%)	68	0.15425	1	0.0012931	0.773	0.84291	1	0.17989	1	0.14106	1	1	1	0.18404	1	0.24064	1
22q gain	0 (0%)	74	0.06464	1	0.90606	1	0.46252	1	0.54066	1	0.05677	1	0.29662	1	0.060673	1	0.06844	1
Xq gain	0 (0%)	80	0.15999	1	1	1	NA	NA	NA	NA	0.6503	1	0.62273	1	0.76524	1	0.62963	1
1p loss	0 (0%)	74	0.037841	1	0.34131	1	0.18859	1	0.74353	1	0.29399	1	0.16005	1	0.18901	1	0.38732	1
1q loss	0 (0%)	76	0.72836	1	0.55023	1	0.85626	1	0.71501	1	0.51751	1	0.74778	1	0.5104	1	0.73682	1
2p loss	0 (0%)	67	0.0067362	1	0.0062567	1	0.084436	1	0.033537	1	0.083558	1	0.080417	1	0.017572	1	0.23326	1
2q loss	0 (0%)	67	0.00050149	0.301	0.035409	1	0.91842	1	0.23237	1	0.2922	1	0.52392	1	0.60884	1	0.19176	1
3p loss	0 (0%)	70	0.11731	1	0.1526	1	0.39314	1	0.28692	1	0.053241	1	0.54969	1	0.10049	1	0.34853	1
3q loss	0 (0%)	68	0.069991	1	0.011203	1	0.46829	1	0.44393	1	0.069051	1	0.08197	1	0.0066536	1	0.023229	1
4p loss	0 (0%)	73	0.0497	1	0.052296	1	0.31271	1	0.39654	1	0.5686	1	0.61565	1	0.28539	1	0.57741	1
4q loss	0 (0%)	73	0.6555	1	0.057026	1	0.1133	1	0.76859	1	0.87484	1	1	1	0.44103	1	1	1
5p loss	0 (0%)	77	0.61872	1	0.86853	1	0.48447	1	0.66751	1	0.77357	1	1	1	0.73243	1	1	1
5q loss	0 (0%)	77	1	1	0.24002	1	0.22859	1	0.66751	1	0.77357	1	1	1	0.73243	1	1	1
6p loss	0 (0%)	71	0.80413	1	0.26068	1	0.53454	1	0.58153	1	0.18918	1	0.36002	1	0.17721	1	0.33909	1
6q loss	0 (0%)	76	0.10167	1	0.08755	1	0.5991	1	0.29132	1	0.2475	1	0.36475	1	0.22825	1	0.32681	1
7p loss	0 (0%)	73	0.0016011	0.956	0.20951	1	0.28018	1	0.032369	1	0.50735	1	0.61565	1	0.53206	1	0.050733	1
7q loss	0 (0%)	75	0.32572	1	0.52431	1	0.55621	1	0.74353	1	0.83662	1	1	1	0.88278	1	1	1
8p loss	0 (0%)	69	0.082457	1	0.81386	1	0.68377	1	1	1	0.84533	1	0.010772	1	1	1	0.61865	1
8q loss	0 (0%)	75	0.42071	1	0.37572	1	0.78304	1	1	1	0.74479	1	0.13817	1	0.77621	1	0.74033	1
9p loss	0 (0%)	66	1.0944e-06	0.000665	0.087685	1	0.011361	1	0.018585	1	0.043672	1	0.33994	1	0.24949	1	0.24157	1
9q loss	0 (0%)	75	0.00101	0.605	0.33418	1	0.031618	1	0.22105	1	0.016673	1	0.77132	1	0.17976	1	0.74033	1
10p loss	0 (0%)	55	0.0017197	1	0.00036114	0.217	0.010864	1	0.019486	1	0.010061	1	0.022192	1	0.0029791	1	0.025258	1
10q loss	0 (0%)	51	3.7838e-06	0.0023	4.576e-05	0.0277	0.011745	1	0.002487	1	0.018208	1	0.0081451	1	0.00029486	0.178	0.00203	1
11p loss	0 (0%)	57	0.26922	1	0.0018926	1	0.58879	1	0.29786	1	0.7537	1	0.39545	1	0.65388	1	0.2462	1
11q loss	0 (0%)	62	0.0035982	1	0.0058503	1	0.78808	1	0.19319	1	0.60703	1	0.19777	1	0.21168	1	0.042595	1
12p loss	0 (0%)	74	0.025176	1	0.24735	1	0.8586	1	1	1	0.70381	1	0.091611	1	0.89307	1	0.53891	1
12q loss	0 (0%)	70	0.31011	1	0.80697	1	0.93716	1	1	1	0.90225	1	0.31935	1	1	1	1	1
13q loss	0 (0%)	49	0.00014819	0.0895	0.078424	1	0.70704	1	0.69151	1	0.32316	1	0.91216	1	0.72349	1	0.55892	1
14q loss	0 (0%)	59	0.45486	1	0.75383	1	0.010286	1	0.37428	1	0.22167	1	0.57447	1	0.72328	1	0.19909	1
15q loss	0 (0%)	72	0.22119	1	0.27718	1	0.1982	1	0.22105	1	0.021619	1	0.010406	1	0.033129	1	0.083428	1
16p loss	0 (0%)	67	0.0032649	1	0.17146	1	0.84057	1	0.26299	1	0.2922	1	0.52392	1	0.60884	1	0.19176	1
16q loss	0 (0%)	49	0.11385	1	3.7231e-05	0.0226	0.15964	1	0.017917	1	0.00089482	0.537	0.0090326	1	0.016975	1	0.0095284	1
17p loss	0 (0%)	71	0.30688	1	0.11626	1	0.092221	1	0.3469	1	0.56224	1	0.36002	1	0.44325	1	0.33909	1
17q loss	0 (0%)	75	0.79274	1	0.10909	1	0.050525	1	0.34534	1	0.17457	1	0.29662	1	0.36853	1	0.23739	1
18p loss	0 (0%)	70	0.4469	1	0.081036	1	0.42261	1	1	1	0.43097	1	1	1	0.72357	1	1	1
18q loss	0 (0%)	69	0.10996	1	0.19933	1	0.36273	1	0.61797	1	0.26356	1	0.84667	1	0.92347	1	1	1
19p loss	0 (0%)	79	0.4402	1	0.31948	1	0.33866	1	0.58544	1	0.53393	1	0.3951	1	0.3793	1	0.39053	1
19q loss	0 (0%)	74	0.52307	1	0.079286	1	0.61121	1	0.74353	1	0.45281	1	0.78306	1	0.45773	1	0.7663	1
20p loss	0 (0%)	73	0.76967	1	0.76516	1	0.82682	1	1	1	0.83583	1	0.15023	1	1	1	0.7695	1
20q loss	0 (0%)	79	0.72215	1	0.68484	1	0.83531	1	1	1	0.41037	1	0.024803	1	0.80982	1	0.63432	1
21q loss	0 (0%)	71	0.11136	1	1	1	0.50543	1	0.79041	1	0.32407	1	0.1956	1	0.91576	1	0.79168	1
22q loss	0 (0%)	62	0.80131	1	0.13673	1	0.14375	1	1	1	0.88326	1	1	1	0.70572	1	1	1
Xq loss	0 (0%)	69	0.14281	1	0.10869	1	0.54303	1	0.17989	1	0.24669	1	0.69578	1	0.57773	1	0.12422	1