Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1p32.1)	0 (0%)	55	0.00020771	0.0754	0.0034344	1	0.50629	1	0.16525	1	0.091243	1	0.01365	1	0.057329	1	0.016989	1
Amp Peak  2(1q24.3)	0 (0%)	49	0.0051363	1	0.41003	1	0.74313	1	0.69151	1	0.2127	1	0.62725	1	0.68711	1	0.41944	1
Amp Peak  3(5p15.33)	0 (0%)	51	0.0047776	1	0.22517	1	0.18289	1	0.042472	1	0.22119	1	0.3242	1	0.046327	1	0.24893	1
Amp Peak  4(6p21.1)	0 (0%)	62	0.010485	1	9.1909e-05	0.0338	0.131	1	0.010129	1	0.0088249	1	0.014379	1	0.0027949	0.928	0.011409	1
Amp Peak  5(6q24.3)	0 (0%)	56	0.0026383	0.879	0.00052112	0.186	0.0016183	0.552	0.0022249	0.748	0.0078915	1	0.00046968	0.169	0.00019326	0.0705	0.0011238	0.391
Amp Peak  6(7p21.3)	0 (0%)	55	0.16166	1	0.030728	1	0.030093	1	0.055782	1	0.031361	1	0.054367	1	0.019181	1	0.071181	1
Amp Peak  7(11q22.2)	0 (0%)	67	0.58516	1	0.25007	1	0.39842	1	0.29415	1	0.24487	1	0.14261	1	0.073071	1	0.070981	1
Amp Peak  8(12p12.1)	0 (0%)	60	0.049147	1	0.37845	1	0.27688	1	0.59455	1	0.018181	1	0.62975	1	0.060343	1	0.85629	1
Amp Peak  9(12q15)	0 (0%)	43	3.0234e-10	1.16e-07	5.1162e-10	1.95e-07	1.5766e-08	5.96e-06	3.8903e-10	1.49e-07	8.3455e-09	3.16e-06	3.3543e-08	1.26e-05	6.6607e-12	2.56e-09	2.3173e-09	8.81e-07
Amp Peak 10(17p11.2)	0 (0%)	54	0.035743	1	0.0052229	1	0.86364	1	0.30397	1	0.041079	1	0.54353	1	0.63862	1	0.27452	1
Amp Peak 11(19p13.2)	0 (0%)	52	0.021027	1	0.63271	1	0.099861	1	0.42245	1	0.55317	1	0.91496	1	0.71321	1	0.45909	1
Amp Peak 12(19q12)	0 (0%)	57	0.032127	1	0.0009689	0.339	0.69975	1	0.18232	1	0.1945	1	0.67123	1	0.1964	1	0.30825	1
Amp Peak 13(Xq21.1)	0 (0%)	67	0.0041976	1	0.10552	1	0.14248	1	0.82657	1	0.061724	1	1	1	0.024381	1	1	1
Del Peak  1(1p36.32)	0 (0%)	56	0.14581	1	0.0010245	0.358	0.0013847	0.475	0.00053231	0.19	0.00030582	0.11	0.00021454	0.0777	0.00066793	0.235	7.2722e-05	0.027
Del Peak  2(1p32.3)	0 (0%)	68	1.9466e-05	0.00728	0.9378	1	0.44413	1	0.80538	1	0.28243	1	0.36628	1	0.55114	1	0.82128	1
Del Peak  3(1q44)	0 (0%)	54	0.0018919	0.639	0.070274	1	0.044091	1	0.063208	1	0.29329	1	0.37909	1	0.062858	1	0.27842	1
Del Peak  4(2p25.3)	0 (0%)	57	0.019258	1	0.031239	1	0.12637	1	0.015432	1	0.014287	1	0.0068095	1	0.0015087	0.516	0.0022805	0.764
Del Peak  5(2q37.3)	0 (0%)	47	0.00011005	0.0403	0.028028	1	0.081347	1	0.55307	1	0.66418	1	0.20422	1	0.54977	1	0.14492	1
Del Peak  6(3p21.31)	0 (0%)	62	0.0012379	0.43	0.040658	1	0.076344	1	0.010129	1	0.0048835	1	0.008304	1	0.071587	1	0.081539	1
Del Peak  7(3q25.2)	0 (0%)	61	0.015254	1	0.0012556	0.434	0.023717	1	0.012611	1	0.15944	1	0.0045151	1	0.019417	1	0.0067217	1
Del Peak  8(4q34.3)	0 (0%)	48	0.043556	1	0.021962	1	0.10194	1	0.4075	1	0.44366	1	0.91193	1	0.52376	1	0.64004	1
Del Peak  9(6p24.3)	0 (0%)	53	0.54838	1	0.030785	1	0.64219	1	0.17621	1	0.16524	1	0.27492	1	0.073937	1	0.59572	1
Del Peak 10(6q15)	0 (0%)	64	0.12049	1	0.14766	1	0.40137	1	0.11167	1	0.27895	1	0.15639	1	0.44131	1	0.053192	1
Del Peak 11(7q36.3)	0 (0%)	63	0.75611	1	0.47511	1	0.56568	1	0.16661	1	0.97651	1	0.77718	1	0.6957	1	0.19985	1
Del Peak 12(8p23.3)	0 (0%)	61	0.0049347	1	0.0098909	1	0.23429	1	0.2799	1	0.14525	1	0.008304	1	0.19025	1	0.2081	1
Del Peak 13(9p24.3)	0 (0%)	50	1.9592e-06	0.000735	0.019933	1	0.010991	1	0.00049925	0.179	0.060001	1	0.051362	1	0.0018588	0.63	0.087594	1
Del Peak 14(9p21.3)	0 (0%)	46	1.3301e-07	5e-05	0.012053	1	0.00069252	0.243	8.7691e-05	0.0324	0.018487	1	0.21179	1	8.9672e-05	0.0331	0.22019	1
Del Peak 15(9q34.3)	0 (0%)	58	0.0048038	1	0.041618	1	0.19906	1	0.52121	1	0.24805	1	0.25552	1	0.40638	1	0.13502	1
Del Peak 16(10p15.3)	0 (0%)	44	0.016116	1	0.048168	1	0.12369	1	0.4161	1	0.50512	1	0.24467	1	0.60614	1	0.2687	1
Del Peak 17(10q23.31)	0 (0%)	42	0.00010652	0.0391	0.0002193	0.0792	0.0038992	1	0.00058699	0.207	0.0043328	1	0.0029324	0.971	0.0013309	0.459	0.00057337	0.204
Del Peak 18(11p15.5)	0 (0%)	45	0.03988	1	0.11684	1	0.56131	1	0.71644	1	0.75772	1	1	1	0.76118	1	0.50237	1
Del Peak 19(11q22.3)	0 (0%)	49	0.001788	0.608	0.017193	1	0.50073	1	0.22649	1	0.083257	1	0.17221	1	0.096593	1	0.173	1
Del Peak 20(11q24.3)	0 (0%)	46	0.0047734	1	0.0094122	1	0.28172	1	0.076836	1	0.13165	1	0.039428	1	0.03901	1	0.057198	1
Del Peak 21(12p13.1)	0 (0%)	58	0.016202	1	0.049879	1	0.40159	1	0.72542	1	0.32331	1	0.21483	1	0.41941	1	0.1032	1
Del Peak 22(13q14.2)	0 (0%)	24	0.000194	0.0706	6.4361e-05	0.0239	0.018647	1	0.0088519	1	0.0056595	1	0.019392	1	0.0050454	1	0.0086724	1
Del Peak 23(14q24.1)	0 (0%)	48	0.039781	1	0.92301	1	0.0013478	0.464	0.54246	1	0.18927	1	0.20422	1	0.27485	1	0.26196	1
Del Peak 24(16q12.1)	0 (0%)	37	0.070872	1	0.0019794	0.667	0.34872	1	0.18718	1	0.083058	1	0.039428	1	0.10686	1	0.013851	1
Del Peak 25(17p13.1)	0 (0%)	56	0.072549	1	0.02305	1	0.088801	1	0.036929	1	0.13186	1	0.058447	1	0.061609	1	0.022293	1
Del Peak 26(17q25.3)	0 (0%)	57	0.032667	1	0.10864	1	0.44455	1	0.055786	1	0.639	1	0.59308	1	0.53705	1	0.25911	1
Del Peak 27(18p11.32)	0 (0%)	58	0.18777	1	0.15297	1	0.81068	1	0.86515	1	0.46949	1	0.66392	1	0.85526	1	0.6364	1
Del Peak 28(18q23)	0 (0%)	52	0.22565	1	0.28542	1	0.27075	1	0.37723	1	1	1	0.75643	1	0.42296	1	0.60349	1
Del Peak 29(19p13.3)	0 (0%)	60	0.0048923	1	0.0079452	1	0.085591	1	0.02527	1	0.11246	1	0.034832	1	0.026208	1	0.0694	1
Del Peak 30(19q13.33)	0 (0%)	53	0.085868	1	2.4069e-05	0.00898	0.65292	1	0.1324	1	0.38725	1	0.62101	1	0.17011	1	0.28865	1
Del Peak 31(21q22.3)	0 (0%)	56	0.46842	1	0.83765	1	0.42268	1	0.64746	1	0.75615	1	0.67691	1	0.46177	1	1	1
Del Peak 32(22q13.32)	0 (0%)	49	0.043105	1	0.00058554	0.207	0.040203	1	0.69151	1	0.49503	1	0.21797	1	0.12987	1	0.55028	1
Del Peak 33(Xp21.1)	0 (0%)	67	0.46494	1	0.071117	1	0.63575	1	0.3169	1	0.047105	1	0.11834	1	0.15114	1	0.23326	1
Del Peak 34(Xq21.1)	0 (0%)	48	0.51955	1	0.13204	1	0.27907	1	0.068937	1	0.32127	1	0.11829	1	0.14535	1	0.056846	1
Del Peak 35(Xq27.1)	0 (0%)	42	0.0025819	0.862	0.050927	1	0.10989	1	0.046123	1	0.63061	1	0.45572	1	0.21106	1	0.18455	1