Molecular subtypes	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1p36.22)	0 (0%)	269	5.2294e-08	3.43e-05	0.0030392	1	0.63746	1	0.08809	1	0.00085354	0.4	0.0088677	1	0.9747	1	0.024901	1	0.75755	1	0.024694	1
Amp Peak  2(1q21.3)	0 (0%)	197	1.9929e-18	1.47e-15	4.3167e-11	3.01e-08	0.048082	1	0.0092327	1	3.1434e-12	2.22e-09	4.743e-07	0.000303	9.5421e-09	6.39e-06	3.0866e-08	2.04e-05	0.00034663	0.174	6.3947e-10	4.37e-07
Amp Peak  3(1q42.3)	0 (0%)	200	3.533e-14	2.55e-11	1.152e-07	7.49e-05	0.31646	1	0.3103	1	4.2107e-09	2.85e-06	0.00017169	0.0905	1.9341e-08	1.29e-05	6.6079e-09	4.45e-06	0.017753	1	7.2773e-08	4.75e-05
Amp Peak  4(3q26.2)	0 (0%)	204	6.7818e-05	0.038	0.0074335	1	0.97196	1	0.098623	1	0.36879	1	0.32495	1	0.42452	1	0.14559	1	0.31937	1	0.0041845	1
Amp Peak  5(5p13.1)	0 (0%)	218	7.4819e-14	5.39e-11	2.0918e-07	0.000135	0.7759	1	1	1	2.5193e-08	1.67e-05	0.00016085	0.0856	0.00034682	0.174	1.9916e-06	0.00124	0.033418	1	5.8362e-06	0.00357
Amp Peak  6(6p21.1)	0 (0%)	225	2.8446e-16	2.09e-13	2.191e-10	1.51e-07	0.14693	1	0.45031	1	0.00023253	0.12	0.0087075	1	6.0502e-05	0.0341	1.3049e-06	0.000823	0.053477	1	4.9647e-06	0.00305
Amp Peak  7(6q12)	0 (0%)	245	1.3689e-09	9.29e-07	2.3067e-08	1.53e-05	0.02412	1	0.14497	1	4.1778e-06	0.00259	0.00011824	0.0642	0.00086375	0.404	5.1487e-05	0.0292	0.058098	1	4.6299e-06	0.00285
Amp Peak  8(6q21)	0 (0%)	249	3.8965e-08	2.56e-05	1.68e-05	0.00988	0.23592	1	0.42539	1	2.7431e-05	0.0159	1.1091e-05	0.00659	0.0035687	1	0.0010047	0.463	0.037121	1	1.5633e-05	0.00922
Amp Peak  9(7p22.3)	0 (0%)	148	1.4088e-18	1.04e-15	1.739e-05	0.0102	0.36981	1	0.90842	1	0.0015181	0.676	0.030639	1	0.012591	1	0.0012262	0.558	0.0040793	1	0.00023339	0.12
Amp Peak 10(7p11.2)	0 (0%)	162	5.3293e-16	3.91e-13	0.0099491	1	0.82784	1	0.92069	1	0.11068	1	0.44836	1	0.022133	1	0.031477	1	0.0178	1	0.043743	1
Amp Peak 11(7q21.2)	0 (0%)	168	3.0732e-15	2.25e-12	0.019553	1	0.21082	1	0.6248	1	0.36598	1	0.40974	1	0.29899	1	0.17417	1	0.28682	1	0.083876	1
Amp Peak 12(8p23.1)	0 (0%)	184	0.00086243	0.404	0.0029823	1	0.61122	1	0.71615	1	0.028344	1	0.002379	1	0.30385	1	0.022481	1	0.16129	1	0.039297	1
Amp Peak 13(8q24.21)	0 (0%)	101	0.00062619	0.299	4.4627e-05	0.0254	0.37738	1	0.62395	1	0.0093106	1	0.11642	1	0.0012811	0.58	0.0001809	0.0952	0.00013965	0.0753	0.00025402	0.129
Amp Peak 14(9p24.1)	0 (0%)	256	0.58199	1	0.08784	1	0.61456	1	0.014755	1	0.089336	1	0.047331	1	0.18766	1	0.013871	1	0.029856	1	0.12953	1
Amp Peak 15(9q34.3)	0 (0%)	231	2.1162e-06	0.00132	0.0051731	1	0.67091	1	0.17547	1	0.021415	1	0.010251	1	0.21468	1	0.080996	1	0.032103	1	0.014282	1
Amp Peak 16(10q22.2)	0 (0%)	249	6.2532e-06	0.0038	0.074625	1	0.036627	1	0.20435	1	0.011635	1	0.0082492	1	0.10477	1	0.048685	1	0.17334	1	0.043803	1
Amp Peak 17(10q26.13)	0 (0%)	244	0.00036067	0.18	0.0012812	0.58	0.051128	1	0.25601	1	0.002894	1	0.0035959	1	0.4443	1	0.0091882	1	0.89491	1	0.0158	1
Amp Peak 18(11p13)	0 (0%)	251	0.0022972	0.992	0.1863	1	0.67399	1	0.45083	1	0.00098773	0.457	0.00045607	0.222	0.049334	1	2.4826e-05	0.0145	0.27526	1	0.0054027	1
Amp Peak 19(11q13.3)	0 (0%)	237	7.1667e-06	0.00434	0.19377	1	0.19384	1	0.71767	1	0.1052	1	0.012903	1	0.00059009	0.283	0.043693	1	0.012908	1	0.053854	1
Amp Peak 20(12p12.1)	0 (0%)	219	6.1203e-05	0.0344	0.011401	1	0.34139	1	0.087249	1	0.29785	1	0.43943	1	0.016655	1	0.10087	1	0.013121	1	0.087687	1
Amp Peak 21(12q15)	0 (0%)	228	0.00016179	0.0858	0.00048876	0.237	0.13298	1	0.62772	1	0.10661	1	0.017747	1	0.14481	1	0.06732	1	0.10953	1	0.05513	1
Amp Peak 22(13q12.3)	0 (0%)	189	2.4291e-10	1.67e-07	4.545e-06	0.0028	0.26234	1	0.4279	1	0.0078204	1	0.3751	1	0.0096856	1	0.0068257	1	0.059577	1	0.0091785	1
Amp Peak 23(13q22.1)	0 (0%)	184	1.0558e-07	6.87e-05	4.1325e-05	0.0238	0.094752	1	0.28826	1	0.00029054	0.147	0.0017067	0.753	0.0036289	1	4.5972e-05	0.0262	0.0047421	1	3.7944e-05	0.0219
Amp Peak 24(15q26.1)	0 (0%)	236	1.239e-12	8.86e-10	0.00044114	0.216	0.35363	1	0.76444	1	6.6093e-05	0.0371	2.4145e-05	0.0141	0.063296	1	0.020201	1	0.0085473	1	0.093815	1
Amp Peak 25(17q12)	0 (0%)	213	1.1193e-14	8.13e-12	2.6762e-06	0.00166	0.73419	1	0.53486	1	0.00015799	0.0844	0.00022007	0.114	0.00035296	0.176	0.00016305	0.0861	0.17125	1	0.00227	0.983
Amp Peak 26(18q11.2)	0 (0%)	215	1.7492e-07	0.000113	0.00030593	0.154	0.30593	1	0.03639	1	0.0066604	1	0.014749	1	0.038639	1	0.013479	1	0.032228	1	0.042317	1
Amp Peak 27(19q12)	0 (0%)	215	1.0641e-15	7.79e-13	1.0052e-10	6.96e-08	0.0031971	1	0.015746	1	1.0132e-13	7.29e-11	5.6184e-09	3.79e-06	4.397e-06	0.00272	2.0996e-14	1.52e-11	0.1726	1	7.0496e-13	5.05e-10
Amp Peak 28(20q13.2)	0 (0%)	104	2.4049e-24	1.8e-21	4.2366e-12	2.99e-09	0.0049943	1	0.7389	1	4.2455e-08	2.79e-05	1.7681e-05	0.0104	1.28e-06	0.000809	4.398e-12	3.1e-09	0.063964	1	1.7909e-09	1.21e-06
Amp Peak 29(Xq27.3)	0 (0%)	245	2.1844e-05	0.0128	0.19077	1	0.98039	1	0.63291	1	0.055038	1	0.64601	1	0.055338	1	0.93203	1	0.071486	1	0.22756	1
Del Peak  1(1p36.11)	0 (0%)	222	9.6242e-15	7.02e-12	0.0003959	0.194	0.19064	1	0.043589	1	0.00011331	0.0619	0.00096231	0.447	7.8733e-05	0.0439	7.8373e-05	0.0437	0.0067025	1	0.00034049	0.171
Del Peak  2(1p13.2)	0 (0%)	246	4.7354e-13	3.4e-10	0.0066913	1	0.12843	1	0.16857	1	0.00014661	0.0787	0.00057484	0.276	0.0034746	1	0.0114	1	0.40448	1	0.027184	1
Del Peak  3(1q44)	0 (0%)	282	0.014532	1	0.0074751	1	0.61803	1	0.20698	1	0.17008	1	0.012945	1	0.16639	1	0.13266	1	0.050222	1	0.085291	1
Del Peak  4(2q32.1)	0 (0%)	263	0.00029095	0.147	0.10796	1	0.49	1	0.22075	1	0.086031	1	0.83008	1	0.40275	1	0.032974	1	0.61732	1	0.51457	1
Del Peak  5(2q37.2)	0 (0%)	258	0.00020175	0.105	0.0073601	1	0.25867	1	0.28436	1	0.0068488	1	0.38857	1	0.010895	1	1.562e-06	0.000979	0.15828	1	0.00039023	0.192
Del Peak  6(3p26.2)	0 (0%)	222	7.1298e-12	5.01e-09	5.7426e-05	0.0324	0.2008	1	0.98247	1	0.0015057	0.672	0.011191	1	0.00045322	0.221	0.00023837	0.122	0.083316	1	0.0025715	1
Del Peak  7(3p14.2)	0 (0%)	203	6.1432e-11	4.26e-08	1.2366e-06	0.000783	0.44179	1	0.95315	1	0.0002418	0.124	0.00023049	0.119	0.00036326	0.181	4.3498e-05	0.0249	0.061282	1	6.0752e-06	0.00371
Del Peak  8(3q26.31)	0 (0%)	271	9.8882e-06	0.0059	0.00010717	0.0586	0.1932	1	0.71108	1	0.0013581	0.611	0.0068031	1	0.00078825	0.372	0.0063204	1	0.16588	1	0.01543	1
Del Peak  9(4p16.3)	0 (0%)	193	6.3033e-12	4.44e-09	0.00099107	0.458	0.46518	1	0.22679	1	0.00012621	0.0683	0.00020655	0.108	0.0001827	0.0959	1.1021e-06	0.000699	0.0022388	0.976	6.0883e-06	0.00371
Del Peak 10(4q22.1)	0 (0%)	170	6.4057e-19	4.76e-16	3.8453e-07	0.000247	0.14434	1	0.76701	1	0.0025777	1	0.00090667	0.422	0.011295	1	4.1403e-05	0.0238	0.10293	1	0.0045199	1
Del Peak 11(4q34.3)	0 (0%)	178	1.071e-14	7.79e-12	1.8722e-06	0.00117	0.074817	1	0.88135	1	4.2454e-05	0.0243	4.3798e-05	0.025	5.2862e-05	0.03	8.1596e-07	0.00052	0.1411	1	9.1934e-05	0.0507
Del Peak 12(5q11.2)	0 (0%)	202	5.9433e-27	4.45e-24	2.4868e-14	1.8e-11	0.30839	1	0.43805	1	2.8066e-11	1.96e-08	1.4983e-10	1.03e-07	2.766e-09	1.87e-06	6.5458e-12	4.6e-09	2.9949e-06	0.00186	1.0297e-12	7.37e-10
Del Peak 13(5q23.2)	0 (0%)	212	1.4369e-22	1.07e-19	2.2928e-12	1.63e-09	0.17501	1	0.23786	1	1.687e-12	1.2e-09	5.0972e-09	3.44e-06	2.3997e-10	1.65e-07	5.2895e-11	3.69e-08	8.1736e-07	0.00052	1.4522e-12	1.04e-09
Del Peak 14(6p25.3)	0 (0%)	237	2.4044e-07	0.000155	0.00057609	0.277	0.46645	1	0.20547	1	0.0016344	0.724	0.0012363	0.561	0.010438	1	6.1117e-06	0.00372	0.10352	1	0.010548	1
Del Peak 15(6q26)	0 (0%)	243	7.2407e-06	0.00437	0.071103	1	0.5912	1	0.090092	1	0.0012159	0.554	0.00039426	0.194	0.27922	1	0.016897	1	0.18723	1	0.090796	1
Del Peak 16(7q31.1)	0 (0%)	261	2.7477e-07	0.000177	0.0011647	0.533	0.48252	1	0.78031	1	0.026616	1	0.086904	1	0.01679	1	0.067681	1	9.8666e-05	0.0543	0.045024	1
Del Peak 17(7q36.3)	0 (0%)	247	1.0511e-14	7.65e-12	1.3075e-05	0.00775	0.39207	1	0.80155	1	2.4406e-06	0.00152	1.363e-05	0.00807	0.012365	1	7.1143e-05	0.0398	0.038331	1	0.0001051	0.0576
Del Peak 18(8p23.2)	0 (0%)	228	5.1709e-15	3.77e-12	8.1061e-06	0.00487	0.10514	1	0.14603	1	8.1418e-06	0.00489	9.9202e-06	0.00591	0.0050385	1	7.9631e-08	5.19e-05	0.024374	1	0.0002143	0.111
Del Peak 19(9p23)	0 (0%)	185	3.4142e-18	2.52e-15	8.7608e-05	0.0484	0.04766	1	0.51161	1	9.8462e-06	0.00589	0.0023061	0.994	0.032533	1	0.0045278	1	0.85223	1	0.0020418	0.894
Del Peak 20(9p21.3)	0 (0%)	187	9.2337e-19	6.85e-16	1.9238e-10	1.33e-07	0.00012283	0.0666	0.15296	1	1.6995e-08	1.14e-05	0.00011669	0.0635	0.027266	1	0.0013928	0.624	0.86371	1	0.00015939	0.085
Del Peak 21(9q21.11)	0 (0%)	232	2.5152e-12	1.79e-09	0.00022338	0.115	0.16339	1	0.52779	1	0.014316	1	0.14759	1	0.022493	1	0.012362	1	0.46519	1	0.0011579	0.531
Del Peak 22(10p15.1)	0 (0%)	267	0.00011501	0.0627	0.27709	1	0.41175	1	0.61551	1	0.24387	1	0.23422	1	0.13201	1	0.042315	1	0.15425	1	0.40551	1
Del Peak 23(10q22.3)	0 (0%)	256	4.6144e-10	3.16e-07	0.0007179	0.34	0.74942	1	0.45288	1	0.00018533	0.0971	0.0094773	1	0.011455	1	0.00067749	0.323	0.11671	1	0.011055	1
Del Peak 24(10q23.31)	0 (0%)	232	3.0104e-12	2.13e-09	5.2253e-06	0.0032	0.068969	1	0.15913	1	3.2712e-06	0.00203	0.0029698	1	0.00037362	0.185	1.0733e-05	0.00639	0.25038	1	0.00050054	0.242
Del Peak 25(11p15.4)	0 (0%)	246	2.1477e-08	1.43e-05	8.053e-06	0.00485	1.5724e-05	0.00926	0.0011844	0.541	0.0045639	1	0.00084224	0.396	0.49176	1	8.2888e-05	0.0461	0.25575	1	0.0059877	1
Del Peak 26(11q23.2)	0 (0%)	243	0.00068998	0.328	0.001666	0.736	0.7911	1	0.51305	1	0.0070652	1	0.23288	1	0.3256	1	0.53783	1	0.4206	1	0.62228	1
Del Peak 27(12p13.31)	0 (0%)	255	9.8709e-12	6.92e-09	5.6975e-06	0.00349	0.60924	1	0.93175	1	1.4927e-07	9.69e-05	1.3561e-06	0.000854	0.032407	1	0.011197	1	0.23875	1	5.5158e-05	0.0312
Del Peak 28(13q12.11)	0 (0%)	261	9.8372e-05	0.0542	0.12644	1	0.43546	1	0.081981	1	0.25902	1	0.02952	1	0.50885	1	0.072931	1	0.86833	1	0.049509	1
Del Peak 29(14q21.1)	0 (0%)	234	9.4949e-09	6.37e-06	0.015925	1	0.18083	1	0.47949	1	0.00015676	0.084	0.0001887	0.0987	0.004903	1	0.00053298	0.257	0.58244	1	0.00039038	0.192
Del Peak 30(14q32.33)	0 (0%)	216	1.2402e-09	8.43e-07	0.042169	1	0.87629	1	0.58897	1	0.00037737	0.186	1.3841e-05	0.00818	0.034377	1	0.10023	1	0.10816	1	0.011594	1
Del Peak 31(15q15.1)	0 (0%)	226	1.7427e-13	1.25e-10	2.1075e-07	0.000136	0.0054845	1	0.0066871	1	7.1514e-08	4.68e-05	2.6639e-08	1.76e-05	6.4437e-06	0.0039	1.8363e-08	1.22e-05	0.00045523	0.222	4.0851e-05	0.0236
Del Peak 32(16p13.3)	0 (0%)	247	5.9968e-11	4.17e-08	4.1382e-05	0.0238	0.58968	1	0.8376	1	3.4394e-08	2.27e-05	1.1101e-09	7.56e-07	0.00014355	0.0772	4.9673e-06	0.00305	0.00015705	0.084	5.4099e-07	0.000345
Del Peak 33(16q23.1)	0 (0%)	187	4.292e-08	2.82e-05	0.0028933	1	0.68286	1	0.24334	1	0.0013673	0.614	2.8979e-05	0.0168	0.010562	1	0.0020991	0.917	0.0022438	0.976	0.0053898	1
Del Peak 34(17p12)	0 (0%)	190	3.0887e-29	2.32e-26	3.2797e-11	2.29e-08	0.38692	1	0.4279	1	3.2942e-08	2.17e-05	4.3295e-07	0.000278	5.566e-05	0.0314	1.6551e-07	0.000107	0.0010158	0.467	1.3762e-08	9.21e-06
Del Peak 35(17q24.3)	0 (0%)	250	1.4355e-10	9.92e-08	0.00025131	0.128	0.39937	1	0.35702	1	0.00086376	0.404	0.0080579	1	0.002347	1	0.00080854	0.381	0.076944	1	0.098671	1
Del Peak 36(18q21.2)	0 (0%)	172	3.4356e-14	2.48e-11	0.0025647	1	0.7356	1	0.93259	1	0.00056875	0.274	0.0019626	0.862	0.013596	1	0.0030395	1	0.14828	1	0.01456	1
Del Peak 37(19p13.3)	0 (0%)	206	5.4162e-29	4.06e-26	2.3307e-16	1.72e-13	0.0022387	0.976	0.23756	1	1.2286e-16	9.05e-14	3.3824e-16	2.48e-13	4.7125e-07	0.000302	2.8487e-21	2.12e-18	0.0014286	0.639	2.2109e-19	1.64e-16
Del Peak 38(19q13.11)	0 (0%)	262	3.8824e-10	2.66e-07	8.4859e-05	0.0471	0.13407	1	0.76295	1	0.00025746	0.131	0.0068328	1	0.0013416	0.605	1.4746e-06	0.000926	0.0058976	1	8.4997e-05	0.0471
Del Peak 39(20p12.1)	0 (0%)	253	2.8565e-12	2.03e-09	0.00070056	0.333	0.73579	1	0.65996	1	0.013034	1	0.015806	1	0.00016163	0.0858	0.0091606	1	0.23301	1	0.014289	1
Del Peak 40(20p12.1)	0 (0%)	253	2.8565e-12	2.03e-09	0.00070056	0.333	0.73579	1	0.65996	1	0.013034	1	0.015806	1	0.00016163	0.0858	0.0091606	1	0.23301	1	0.014289	1
Del Peak 41(21q11.2)	0 (0%)	198	5.8849e-11	4.1e-08	2.7064e-05	0.0158	0.28233	1	0.17204	1	0.00028278	0.143	8.1764e-07	0.00052	0.00021079	0.11	0.021266	1	0.076724	1	0.001909	0.84
Del Peak 42(21q22.13)	0 (0%)	191	9.3064e-11	6.45e-08	0.00036168	0.18	0.075365	1	0.3519	1	0.0023412	1	8.7838e-06	0.00526	0.0075628	1	0.0085952	1	0.099285	1	0.0050044	1
Del Peak 43(22q13.31)	0 (0%)	204	1.6477e-17	1.22e-14	0.00013549	0.0732	0.082996	1	0.40029	1	0.00024488	0.125	0.0037249	1	9.9848e-05	0.0548	1.3763e-06	0.000866	0.07541	1	3.5188e-05	0.0204
Del Peak 44(Xp22.2)	0 (0%)	244	1.0438e-09	7.12e-07	0.0016225	0.72	0.39069	1	0.61689	1	0.0032637	1	0.028794	1	0.14335	1	0.00037508	0.186	0.67571	1	0.0072838	1
Del Peak 45(Xp21.1)	0 (0%)	253	6.9857e-09	4.69e-06	0.0040678	1	0.048256	1	0.91314	1	0.090416	1	0.012976	1	0.68304	1	0.095235	1	0.97567	1	0.11252	1
Del Peak 46(Xq21.33)	0 (0%)	263	7.285e-06	0.00439	0.035216	1	0.73131	1	0.32864	1	0.029275	1	0.0028352	1	0.10561	1	0.025344	1	0.48197	1	0.023175	1